Citrus Sinensis ID: 028010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF
Secondary Structure (PSIPRED)
cEEEEEEccccHHHHHHHHHHcccEEEEEccccccccccEEEEccccHHHHHHHHHHcccHHHHHHHHHccccEEEHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEcccccEEcccccEEEEEEEccccccccccccHHHHHHHccccccEEEEEEEccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcHHHHHHHHHHHHHcccEEEEEccHHHHHHccEEEEcccHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEEEccEEEEcccccEEEEEccccHHHcccccccccccHHccccccccEEEEEcccEEEEcccHccccccHHHHHc
Coil and Loop (DISEMBL)
MVVGVLALQGSFNEHIAALKRLgvkgveirkpdqlqnvssliipggesttMARLAEYHNLFPALREFVkmgkpvwgtcAGLIFLANKAVgqklggqelvggldctvhrnffgsQIQSFEAelsvpalasqeggpetfrgvfirapavldvgpdvdvladypvpsnkvlysSSTVeiqeenampeKKVIVAVRQgnllgtafhpeltadtrWYIIF
Flexible Loop (DISEMBL)
MVVGVLALQGSFNEHIAALKRLGVKGveirkpdqlqnvssliipgGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVeiqeenampEKKVIVAVRQGNLlgtafhpeltadtrwYIIF
Low Complexity Region (SEG)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF
Disordered region (IsUnstruct)
**VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA****GPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEI*******EKKVIVAVRQGNLLGTAFHPELTADTRWYII*
Disordered Region (DISOPRED)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD*RWYIIF
Disordered Region (DISEMBL)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF
Disordered Region (DISPRO)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKV*****************KKVIVAVRQGNLLGTAFHPELTADTRWYIIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q8LAD0	255	Pyridoxal biosynthesis pr	yes	no	1.0	0.843	0.879	1e-109
Q6AFB8	198	Glutamine amidotransferas	yes	no	0.855	0.929	0.474	1e-41
Q5WKW1	195	Glutamine amidotransferas	yes	no	0.846	0.933	0.446	1e-41
Q2RMI9	188	Glutamine amidotransferas	yes	no	0.851	0.973	0.437	2e-41
A7Z0D4	196	Glutamine amidotransferas	yes	no	0.846	0.928	0.427	3e-41
A5D6D2	196	Glutamine amidotransferas	yes	no	0.851	0.933	0.441	5e-41
C5D338	192	Glutamine amidotransferas	yes	no	0.846	0.947	0.427	2e-40
B8G664	190	Glutamine amidotransferas	yes	no	0.869	0.984	0.423	2e-40
Q5L3Y1	196	Glutamine amidotransferas	yes	no	0.846	0.928	0.427	3e-40
B7GFL9	192	Glutamine amidotransferas	yes	no	0.837	0.937	0.436	3e-40

>sp|Q8LAD0|PDX2_ARATH Pyridoxal biosynthesis protein PDX2 OS=Arabidopsis thaliana GN=PDX2 PE=1 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/215 (87%), Positives = 203/215 (94%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQEE+
Sbjct: 121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A+PE KVIVAV+QGNLL TAFHPELTADTRW+  F
Sbjct: 181 ALPETKVIVAVKQGNLLATAFHPELTADTRWHSYF 215

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: -EC: .EC: -

>sp|Q6AFB8|PDXT_LEIXX Glutamine amidotransferase subunit PdxT OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=pdxT PE=3 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 121/213 (56%), Gaps = 29/213 (13%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           VGVLALQG   EH+  L  LG   V +R+PD+L+ V+ L+IPGGES+ M +LA    L  
Sbjct: 7   VGVLALQGDVREHLTVLWALGADAVRVRRPDELETVAGLVIPGGESSVMDKLARTVGLAG 66

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            LR  +  G PV+GTCAGLI LA+  V   + GQ  +GGLD  V RN FGSQ +SFE +L
Sbjct: 67  PLRNAIAGGLPVYGTCAGLIMLADTIV-DGIAGQRSLGGLDVAVRRNAFGSQAESFETDL 125

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
           S P L     G E    VFIRAP V  VGP   VLA   VP  +V               
Sbjct: 126 SFPTL-----GAEPMHAVFIRAPIVESVGPRATVLAR--VPDGRV--------------- 163

Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                 VAV Q NLLGTAFHPEL+ D R++  F
Sbjct: 164 ------VAVEQDNLLGTAFHPELSGDKRFHEYF 190

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Leifsonia xyli subsp. xyli (strain CTCB07) (taxid: 281090)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q5WKW1|PDXT_BACSK Glutamine amidotransferase subunit PdxT OS=Bacillus clausii (strain KSM-K16) GN=pdxT PE=3 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 122/215 (56%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLALQG+ +EHI  L   G + +EI++ DQL  V  LI+PGGEST M RL + + L
Sbjct: 1   MKIGVLALQGAVSEHIRLLTNSGAEAIEIKRADQLAEVDGLILPGGESTAMRRLIDKYQL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           F  LREF + GKP+ GTCAGLI +A    G++ G    +G +D  V RN FG Q  SFEA
Sbjct: 61  FKPLREFGESGKPILGTCAGLILMAKTLSGEQDGH---LGFIDMVVERNAFGRQRDSFEA 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
            L V  +A      E    VFIRAP V +VGPDVD+L++Y                    
Sbjct: 118 TLDVKGVA------EKLTAVFIRAPLVKEVGPDVDILSEY-------------------- 151

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVAV+QG+ L  +FHPELT D R +  F
Sbjct: 152 ----NGEIVAVKQGSFLACSFHPELTDDARLHQAF 182

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Bacillus clausii (strain KSM-K16) (taxid: 66692)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q2RMI9|PDXT_MOOTA Glutamine amidotransferase subunit PdxT OS=Moorella thermoacetica (strain ATCC 39073) GN=pdxT PE=3 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 124/215 (57%), Gaps = 32/215 (14%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLA+QG+F EHI +L+ LGV+GVEIR  +QL+ ++ LIIPGGESTT+ +L    NL
Sbjct: 1   MRIGVLAMQGAFREHIQSLEALGVQGVEIRHANQLEGIAGLIIPGGESTTIGKLMVEFNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              +R   + G PV+GTCAG++ LA   +G     Q  +G ++  V RN FG Q+ SFE 
Sbjct: 61  LEPVRHLAEGGLPVFGTCAGMVLLARDIIGSD---QPRLGLMNARVQRNAFGRQVDSFEV 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L +P L     G E F  VFIRAP + ++ P  + LA +                    
Sbjct: 118 DLEIPVL-----GEEPFHAVFIRAPYIEEIEPPAEALATF-------------------- 152

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
               K  IV VRQGNLL TAFHPELT D R +  F
Sbjct: 153 ----KDKIVMVRQGNLLATAFHPELTKDLRVHSYF 183

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A7Z0D4|PDXT_BACA2 Glutamine amidotransferase subunit PdxT OS=Bacillus amyloliquefaciens (strain FZB42) GN=pdxT PE=3 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 124/215 (57%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI +++  G KGV I++P+QL ++  LI+PGGESTTM RL + ++ 
Sbjct: 2   LTIGVLGLQGAVREHIRSIEACGSKGVVIKRPEQLDDIDGLILPGGESTTMRRLMDTYHF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGTD---NAHLGLLNVVVERNSFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L++  L       E F GVFIRAP +L+ G DV+VL ++                    
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGEDVEVLCEH-------------------- 152

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA +QGN LG +FHPELT D R   +F
Sbjct: 153 ----NGRIVAAKQGNFLGCSFHPELTDDHRVTELF 183

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A5D6D2|PDXT_PELTS Glutamine amidotransferase subunit PdxT OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pdxT PE=3 SV=1

 Score =  167 bits (423), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 126/215 (58%), Gaps = 32/215 (14%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQG+F EH   L   G + V++RKP+QL+++S+L+IPGGESTT+ +L    NL
Sbjct: 1   MKVGVLALQGAFREHQKVLAACGAESVQVRKPEQLEDISALVIPGGESTTIGKLLLEFNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           F  L +  + G PV+GTCAG+I LA +  G    GQ  +G +D +V RN FG Q++SFEA
Sbjct: 61  FEPLVKLGQGGLPVFGTCAGMILLAREIAGS---GQPRLGLMDISVERNAFGRQVESFEA 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L +P L     G E FR VFIRAP +++ G  V+VLA +                    
Sbjct: 118 DLDIPVL-----GEEPFRAVFIRAPYIIEAGGGVEVLARF-------------------- 152

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                + IV  RQG  L  AFHPELT D R +  F
Sbjct: 153 ----GEKIVMARQGRCLAAAFHPELTGDLRIHRYF 183

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|C5D338|PDXT_GEOSW Glutamine amidotransferase subunit PdxT OS=Geobacillus sp. (strain WCH70) GN=pdxT PE=3 SV=1

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 125/215 (58%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ +++  G + V ++K +QL+ +  LI+PGGESTTM RL + +  
Sbjct: 2   MKIGVLGLQGAVQEHVRSIEACGAEAVVVKKIEQLEEIDGLILPGGESTTMRRLMDKYGF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 62  IEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ELS+  +A      + F GVFIRAP +++VG DV+VLA Y                    
Sbjct: 119 ELSIAGVA------DDFIGVFIRAPHIVEVGEDVEVLAKY-------------------- 152

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
               +  IVA RQG  LG +FHPELT D R    F
Sbjct: 153 ----EGRIVAARQGQFLGCSFHPELTDDYRMTQYF 183

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Geobacillus sp. (strain WCH70) (taxid: 471223)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B8G664|PDXT_CHLAD Glutamine amidotransferase subunit PdxT OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxT PE=3 SV=1

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 28/215 (13%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQG F EH A L+R+GV+ +E+R P QL  V  LIIPGGESTT+ RL   + +
Sbjct: 1   MTVGVLALQGDFREHCAVLRRIGVEPIEVRLPHQLAQVDHLIIPGGESTTIGRLLAIYQM 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              +R        +WGTCAG I LAN+ + QK GGQ  +G ++ T+ RN +GSQ+ SFEA
Sbjct: 61  LEPIRTRGGCDLAIWGTCAGAILLANEVMDQKQGGQPTLGLMNLTIRRNAYGSQLDSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
            +++P +     G E   GVFIRAP ++ +G   + +                       
Sbjct: 121 PITMPII-----GEEPLPGVFIRAPQIMALGQGCEAVGWL-------------------- 155

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
              E   +VA RQG LL T FHPELT D R + +F
Sbjct: 156 ---EDGSVVAARQGRLLATTFHPELTHDDRVHRLF 187

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q5L3Y1|PDXT_GEOKA Glutamine amidotransferase subunit PdxT OS=Geobacillus kaustophilus (strain HTA426) GN=pdxT PE=3 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 123/215 (57%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ A++  G + V ++KP+QL+ +  L++PGGESTTM RL + + L
Sbjct: 1   MKIGVLGLQGAVREHVRAIEACGAEAVIVKKPEQLEGLDGLVLPGGESTTMRRLIDRYGL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 61  MEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ELS+  +       + F GVFIRAP +++ G  VDVLA Y                    
Sbjct: 118 ELSIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY-------------------- 151

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA RQG  LG +FHPELT D R    F
Sbjct: 152 ----NDRIVAARQGQFLGCSFHPELTDDHRLMQYF 182

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Geobacillus kaustophilus (strain HTA426) (taxid: 235909)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B7GFL9|PDXT_ANOFW Glutamine amidotransferase subunit PdxT OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pdxT PE=3 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 122/213 (57%), Gaps = 33/213 (15%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVL LQG+  EH+ +++  G + V I+K +QL  +  LIIPGGESTTM RL + +    
Sbjct: 4   IGVLGLQGAVREHVRSIEACGAEAVVIKKVEQLTQIDGLIIPGGESTTMRRLMDKYGFIE 63

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            L++F + GKP++GTCAGLI LA K VG     +  +G +D TV RN FG Q +SFEA L
Sbjct: 64  PLKQFAREGKPMFGTCAGLIILAKKIVGYD---EPHLGLMDITVERNSFGRQRESFEASL 120

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
           ++  +A      + F GVFIRAP ++ VG DVDVLA Y                      
Sbjct: 121 AIKGVA------DDFIGVFIRAPHIVSVGADVDVLATY---------------------- 152

Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
             +  IVA RQG  LG +FHPELT D R    F
Sbjct: 153 --EDRIVAARQGQFLGCSFHPELTDDHRMTQYF 183

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
297796999	255	ATPDX2/EMB2407/PDX2 [Arabidopsis lyrata	1.0	0.843	0.883	1e-108
18424366	255	Pyridoxal biosynthesis protein PDX2 [Ara	1.0	0.843	0.879	1e-108
325975749	255	pyridoxial biosynthesis 2 [Arabidopsis t	1.0	0.843	0.869	1e-106
224104651	254	predicted protein [Populus trichocarpa]	0.990	0.838	0.849	1e-104
225435289	252	PREDICTED: pyridoxal biosynthesis protei	1.0	0.853	0.837	1e-102
255578878	253	Glutamine amidotransferase subunit pdxT,	0.995	0.845	0.864	1e-101
388511885	253	unknown [Lotus japonicus]	0.995	0.845	0.799	2e-98
388512311	221	unknown [Lotus japonicus]	0.995	0.968	0.799	1e-97
359806630	254	uncharacterized protein LOC100776337 [Gl	0.995	0.842	0.822	1e-97
297746243	252	unnamed protein product [Vitis vinifera]	1.0	0.853	0.809	2e-97

>gi|297796999|ref|XP_002866384.1| ATPDX2/EMB2407/PDX2 [Arabidopsis lyrata subsp. lyrata] gi|297312219|gb|EFH42643.1| ATPDX2/EMB2407/PDX2 [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/215 (88%), Positives = 204/215 (94%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ++SVP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQEE+
Sbjct: 121 DISVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A+PE KVIVAV+QGNLL TAFHPELTADTRW+  F
Sbjct: 181 ALPETKVIVAVKQGNLLATAFHPELTADTRWHSYF 215

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424366|ref|NP_568922.1| Pyridoxal biosynthesis protein PDX2 [Arabidopsis thaliana] gi|75154761|sp|Q8LAD0.1|PDX2_ARATH RecName: Full=Pyridoxal biosynthesis protein PDX2; AltName: Full=Probable glutamine amidotransferase; Short=AtPDX2; AltName: Full=Protein EMBRYO DEFECTIVE 2407 gi|21593486|gb|AAM65453.1| imidazoleglycerol-phosphate synthase subunit H-like [Arabidopsis thaliana] gi|26449721|dbj|BAC41984.1| putative imidazoleglycerol-phosphate synthase subunit H [Arabidopsis thaliana] gi|28950813|gb|AAO63330.1| At5g60540 [Arabidopsis thaliana] gi|332009958|gb|AED97341.1| Pyridoxal biosynthesis protein PDX2 [Arabidopsis thaliana]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/215 (87%), Positives = 203/215 (94%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQEE+
Sbjct: 121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A+PE KVIVAV+QGNLL TAFHPELTADTRW+  F
Sbjct: 181 ALPETKVIVAVKQGNLLATAFHPELTADTRWHSYF 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325975749|gb|ADZ47881.1| pyridoxial biosynthesis 2 [Arabidopsis thaliana]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/215 (86%), Positives = 201/215 (93%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSS IIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSPIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA +AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLAGRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQEE+
Sbjct: 121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A+PE KVIVAV+QGNLL TAF+PELTADTRW+  F
Sbjct: 181 ALPETKVIVAVKQGNLLATAFYPELTADTRWHSYF 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104651|ref|XP_002313515.1| predicted protein [Populus trichocarpa] gi|222849923|gb|EEE87470.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/213 (84%), Positives = 201/213 (94%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           VGVLALQGSFNEHIAAL RLGVKG+EIRKP+QLQNV+SLIIPGGESTTMA+LAE+HNLFP
Sbjct: 4   VGVLALQGSFNEHIAALARLGVKGMEIRKPEQLQNVTSLIIPGGESTTMAKLAEFHNLFP 63

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
           ALREFV+MGKPVWGTCAGLIFLANKA+GQK GGQELVGGLDCTVHRN+FGSQIQSFEAEL
Sbjct: 64  ALREFVQMGKPVWGTCAGLIFLANKAIGQKTGGQELVGGLDCTVHRNYFGSQIQSFEAEL 123

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
           +VP LA +EGGPETFRGVFIRAPA+L+VGP VDVLA+ PVPS  VLYSSS V+IQEEN++
Sbjct: 124 TVPELACKEGGPETFRGVFIRAPAILEVGPGVDVLAECPVPSTNVLYSSSAVQIQEENSV 183

Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           PE+KVIVA++Q NLLGTAFHPELTADTRW+  F
Sbjct: 184 PEEKVIVAIKQRNLLGTAFHPELTADTRWHSYF 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435289|ref|XP_002285095.1| PREDICTED: pyridoxal biosynthesis protein PDX2-like [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 197/215 (91%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL++LGVKGVEIRKP+QL+ V SLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MAVGVLALQGSFNEHIAALRKLGVKGVEIRKPEQLEQVGSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVK+GKPVWGTCAGLIFLANKAVGQK GGQELVGGLDCTVHRNFFGSQIQSFE 
Sbjct: 61  FPALREFVKLGKPVWGTCAGLIFLANKAVGQKTGGQELVGGLDCTVHRNFFGSQIQSFET 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +LSVP LA++EGGPETFRGVFIRAPA+L+VGP V+VLADYPVPS K+  S S +E  +EN
Sbjct: 121 QLSVPELAAKEGGPETFRGVFIRAPAILEVGPKVEVLADYPVPSGKLFDSISALEAPQEN 180

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A  EKKVIVAV+QGNLLGTAFHPELTADTRW+  F
Sbjct: 181 AGSEKKVIVAVKQGNLLGTAFHPELTADTRWHSYF 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578878|ref|XP_002530293.1| Glutamine amidotransferase subunit pdxT, putative [Ricinus communis] gi|223530191|gb|EEF32100.1| Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/214 (86%), Positives = 202/214 (94%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSFNEHIAALKRLGVKGVEIRKP+QL NV+SLIIPGGESTTMA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPEQLDNVTSLIIPGGESTTMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV+ GKPVWGTCAGLIFLA+KAVGQK GGQELVGGLDCTVHRN+FGSQIQSFE E
Sbjct: 63  PALREFVQTGKPVWGTCAGLIFLADKAVGQKTGGQELVGGLDCTVHRNYFGSQIQSFETE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENA 181
           LSVP L S+EGGPETFRGVFIRAPAV++VGP V+VLA+YPVPS  VLYSSS V+IQEENA
Sbjct: 123 LSVPELVSKEGGPETFRGVFIRAPAVVEVGPGVEVLAEYPVPSTNVLYSSSAVQIQEENA 182

Query: 182 MPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           +PEK+VIVAV+QGN+LGTAFHPELTADTRW+  F
Sbjct: 183 LPEKRVIVAVKQGNMLGTAFHPELTADTRWHSFF 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511885|gb|AFK44004.1| unknown [Lotus japonicus]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/214 (79%), Positives = 193/214 (90%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSF+EHIAAL++LGV GVEIRKP+QL NV+SLIIPGGEST MA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFHEHIAALRKLGVNGVEIRKPEQLLNVNSLIIPGGESTAMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV++GKPVWGTCAGLIFLANKA GQK+GGQELVGGLDCTVHRNFFGSQIQSFE E
Sbjct: 63  PALREFVQLGKPVWGTCAGLIFLANKAAGQKIGGQELVGGLDCTVHRNFFGSQIQSFETE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENA 181
           LSVP LAS+EGGPETFRG+FIRAPA+++ GPDV VLADYPV SN++  + S  E ++EN 
Sbjct: 123 LSVPELASKEGGPETFRGIFIRAPAIIEAGPDVQVLADYPVRSNRLSTADSPTEDKKENV 182

Query: 182 MPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
             E KVIVAVRQGN++GTAFHPELTADTRW+  F
Sbjct: 183 EEESKVIVAVRQGNIMGTAFHPELTADTRWHSYF 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512311|gb|AFK44217.1| unknown [Lotus japonicus]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/214 (79%), Positives = 193/214 (90%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSF+EHIAAL++LGV GVEIRKP+QL NV+SLIIPGGEST MA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFHEHIAALRKLGVNGVEIRKPEQLLNVNSLIIPGGESTAMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV++GKPVWGTCAGLIFLANKA GQK+GGQELVGGLDCTVHRNFFGSQIQSFE E
Sbjct: 63  PALREFVQLGKPVWGTCAGLIFLANKAAGQKIGGQELVGGLDCTVHRNFFGSQIQSFETE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENA 181
           LSVP LAS+EGGPETFRG+FIRAPA+++ GPDV VLADYPV SN++  + S  E ++EN 
Sbjct: 123 LSVPELASKEGGPETFRGIFIRAPAIIEAGPDVQVLADYPVRSNRLSTADSPTEDKKENV 182

Query: 182 MPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
             E KVIVAVRQGN++GTAFHPELTADTRW+  F
Sbjct: 183 EEESKVIVAVRQGNIMGTAFHPELTADTRWHSYF 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806630|ref|NP_001241020.1| uncharacterized protein LOC100776337 [Glycine max] gi|255639403|gb|ACU19997.1| unknown [Glycine max]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/214 (82%), Positives = 195/214 (91%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSFNEHIAAL+RLGV+GVEIRKP+QL  +SSLIIPGGESTTMA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFNEHIAALRRLGVQGVEIRKPEQLNTISSLIIPGGESTTMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV+MGKPVWGTCAGLIFLANKA+GQK GGQ LVGGLDCTVHRNFFGSQIQSFEAE
Sbjct: 63  PALREFVQMGKPVWGTCAGLIFLANKAIGQKTGGQYLVGGLDCTVHRNFFGSQIQSFEAE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENA 181
           LSVP L S+EGGPETF G+FIRAPA+L+ GP+V VLADYPVPS+++L S S++E Q ENA
Sbjct: 123 LSVPELVSKEGGPETFCGIFIRAPAILEAGPEVQVLADYPVPSSRLLSSDSSIEDQTENA 182

Query: 182 MPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
             E KVIVAVRQGN+L TAFHPELTADTRW+  F
Sbjct: 183 EKESKVIVAVRQGNILATAFHPELTADTRWHSYF 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746243|emb|CBI16299.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 174/215 (80%), Positives = 190/215 (88%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIA +      GVEIRKP+QL+ V SLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MAVGVLALQGSFNEHIAGISLYFRDGVEIRKPEQLEQVGSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVK+GKPVWGTCAGLIFLANKAVGQK GGQELVGGLDCTVHRNFFGSQIQSFE 
Sbjct: 61  FPALREFVKLGKPVWGTCAGLIFLANKAVGQKTGGQELVGGLDCTVHRNFFGSQIQSFET 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +LSVP LA++EGGPETFRGVFIRAPA+L+VGP V+VLADYPVPS K+  S S +E  +EN
Sbjct: 121 QLSVPELAAKEGGPETFRGVFIRAPAILEVGPKVEVLADYPVPSGKLFDSISALEAPQEN 180

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A  EKKVIVAV+QGNLLGTAFHPELTADTRW+  F
Sbjct: 181 AGSEKKVIVAVKQGNLLGTAFHPELTADTRWHSYF 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2175083	255	PDX2 "pyridoxine biosynthesis	1.0	0.843	0.879	1e-98
UNIPROTKB|G4N4K4	246	MGG_05981 "Glutamine amidotran	0.934	0.817	0.452	1.4e-39
TIGR_CMR|CHY_2702	191	CHY_2702 "glutamine amidotrans	0.697	0.785	0.481	1.3e-38
TIGR_CMR|BA_0011	196	BA_0011 "glutamine amidotransf	0.693	0.760	0.455	3.1e-37
POMBASE|SPAC222.08c	234	SPAC222.08c "glutamine aminotr	0.762	0.700	0.384	4.4e-34
UNIPROTKB|O06210	198	pdxT "Glutamine amidotransfera	0.697	0.757	0.430	1.5e-33
UNIPROTKB|Q3Z8V9	195	pdxT "Glutamine amidotransfera	0.809	0.892	0.462	5.2e-33
TIGR_CMR|DET_0598	195	DET_0598 "SNO glutamine amidot	0.809	0.892	0.462	5.2e-33
ASPGD|ASPL0000007180	271	AN6141 [Emericella nidulans (t	0.920	0.730	0.430	3.7e-32
CGD|CAL0006041	249	SNO1 [Candida albicans (taxid:	0.967	0.835	0.400	3.7e-32

TAIR|locus:2175083 PDX2 "pyridoxine biosynthesis 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 189/215 (87%), Positives = 203/215 (94%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct:     1 MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
             FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct:    61 FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
             ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQEE+
Sbjct:   121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query:   181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
             A+PE KVIVAV+QGNLL TAFHPELTADTRW+  F
Sbjct:   181 ALPETKVIVAVKQGNLLATAFHPELTADTRWHSYF 215

GO:0005737 "cytoplasm" evidence=ISM

GO:0008615 "pyridoxine biosynthetic process" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0004359 "glutaminase activity" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042819 "vitamin B6 biosynthetic process" evidence=IGI;RCA;IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|G4N4K4 MGG_05981 "Glutamine amidotransferase subunit pdxT" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 109/241 (45%), Positives = 136/241 (56%)

Query:     1 MVVGVLALQGSFNEHIAALKR----LGVKGV-----------EIRKPDQLQNVSSLIIPG 45
             + VGVLALQG+F EH+  L+R     G + V           E+R PDQL     L+IPG
Sbjct:     8 VTVGVLALQGAFEEHLKLLQRASTLFGSRHVAAKRVPEFEFLEVRTPDQLARCDGLVIPG 67

Query:    46 GESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDC 104
             GESTT+A +A   NL   LR+FVK+  K  WGTCAGLI LA++A G K GGQELVGGL  
Sbjct:    68 GESTTLAFVARQTNLMEPLRDFVKVDRKSTWGTCAGLILLADEATGAKKGGQELVGGLHV 127

Query:   105 TVHRNFFGSQIQSFEAELSVPALASQ-----EGGPET----FRGVFIRAPAVLDVGPDVD 155
               HRN FG Q+ SF+A+L +P L  +     EG   T    F GVFIRAP V  +    D
Sbjct:   128 RAHRNHFGRQVHSFQADLELPFLGDKAGSGGEGDDSTATRPFPGVFIRAPVVETILSG-D 186

Query:   156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR---WY 212
                D              VE+    A  ++K I+AVRQGN+  T+FHPELT D R   W+
Sbjct:   187 AAGD-----------GDRVEVLGTVARGDEKDIIAVRQGNVFATSFHPELTDDARIHLWW 235

Query:   213 I 213
             +
Sbjct:   236 L 236

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|CHY_2702 CHY_2702 "glutamine amidotransferase, SNO family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 353 (129.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 76/158 (48%), Positives = 99/158 (62%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M +GV+A+QG+F EH   L RLGV+ + IR+P+QL  +  +IIPGGESTT+ +L    NL
Sbjct:     1 MKIGVIAMQGAFREHEQTLARLGVETLRIRRPEQLSQIDGIIIPGGESTTIGKLLGDFNL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                LRE +  G PV+GTCAG+I LA +        Q  +G +D  V RN FG Q+ SFE 
Sbjct:    61 MEPLRERILSGLPVFGTCAGMILLAKEIENSN---QPRIGTMDIKVARNAFGRQVDSFEV 117

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158
             +L +P     E G E  R VFIRAP +L+V P V VLA
Sbjct:   118 DLEIP-----EVGQEPVRAVFIRAPYILEVKPSVQVLA 150

GO:0008152 "metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

TIGR_CMR|BA_0011 BA_0011 "glutamine amidotransferase, SNO family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 345 (126.5 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 72/158 (45%), Positives = 102/158 (64%)

Query:     3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
             +GVL LQG+  EH+ +++  G + V +++ +QL+ +  LI+PGGESTTM RL + ++   
Sbjct:     4 IGVLGLQGAVREHVKSVEASGAEAVVVKRIEQLEEIDGLILPGGESTTMRRLIDKYDFME 63

Query:    63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
              LR F K GKP++GTCAG+I LA   +G     +  +G +D TV RN FG Q  SFEA L
Sbjct:    64 PLRTFAKSGKPMFGTCAGMILLAKTLIGYD---EAHIGAMDITVERNAFGRQKDSFEAAL 120

Query:   123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
             S+      +G  E F GVFIRAP V+DV  DV+VL+ +
Sbjct:   121 SI------KGVGEDFVGVFIRAPYVVDVADDVEVLSTH 152

GO:0008152 "metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

POMBASE|SPAC222.08c SPAC222.08c "glutamine aminotransferase subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 279 (103.3 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 65/169 (38%), Positives = 92/169 (54%)

Query:     3 VGVLALQGSFNEHIAALKRL-GVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEY-HNL 60
             +GVLALQG+F EHI  +  + GV    ++     +N+  LIIPGGESTT+ +L      L
Sbjct:    24 IGVLALQGAFIEHINIMNSIDGVISFPVKTAKDCENIDGLIIPGGESTTIGKLINIDEKL 83

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                L   V  G P+WGTCAG+I L+ K+ G K     L+  +D  V RN+FG Q  SF  
Sbjct:    84 RDRLEHLVDQGLPIWGTCAGMILLSKKSRGGKFPDPYLLRAMDIEVTRNYFGPQTMSFTT 143

Query:   121 ELSVP-ALASQEGGP-ETFRGVFIRAPAVLDV-GPDVDVLADYPVPSNK 166
             +++V  ++  +   P  +F   FIRAP    +   D++VLA      NK
Sbjct:   144 DITVTESMQFEATEPLHSFSATFIRAPVASTILSDDINVLATIVHEGNK 192

GO:0005737 "cytoplasm" evidence=IDA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|O06210 pdxT "Glutamine amidotransferase subunit PdxT" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 290 (107.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 68/158 (43%), Positives = 95/158 (60%)

Query:     3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
             VGVLALQG   EH+AAL+  G + + +R+ D+L  V +L+IPGGESTTM+ L    +L  
Sbjct:     6 VGVLALQGDTREHLAALRECGAEPMTVRRRDELDAVDALVIPGGESTTMSHLLLDLDLLG 65

Query:    63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVG--GLDCTVHRNFFGSQIQSFEA 120
              LR  +  G P +G+CAG+I LA++ +     G++ +    ++ TV RN FGSQ+ SFE 
Sbjct:    66 PLRARLADGLPAYGSCAGMILLASEILDAGAAGRQALPLRAMNMTVRRNAFGSQVDSFEG 125

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158
             ++    L       +  R VFIRAP V  VG  V VLA
Sbjct:   126 DIEFAGL------DDPVRAVFIRAPWVERVGDGVQVLA 157

GO:0016843 "amine-lyase activity" evidence=IDA

GO:0040007 "growth" evidence=IDA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IDA

UNIPROTKB|Q3Z8V9 pdxT "Glutamine amidotransferase subunit PdxT" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 86/186 (46%), Positives = 112/186 (60%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M +GVLALQG+F EHI  L+ LG + VE+RK ++L  +S LIIPGGESTT+ +L     L
Sbjct:     1 MKIGVLALQGAFREHINMLRTLGAEAVEVRKAEELAELSGLIIPGGESTTITKLLYTFGL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                +++  + G PVWGTCAG+I LA +  G  + G + +  +D TV RN FG Q+ SFEA
Sbjct:    61 AKPVKDLARNGMPVWGTCAGMICLAKELSGD-ISGVKTLELMDITVRRNAFGRQVDSFEA 119

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP------VPSNKVLYSSSTV 174
              L V AL   EGG   F  VFIRAP V   G  V+VLA  P      V  N +L +S   
Sbjct:   120 MLKVKAL---EGGD--FPAVFIRAPLVEKTGQWVEVLAKLPDGTMVAVRENNLLATSFHP 174

Query:   175 EIQEEN 180
             E+  +N
Sbjct:   175 ELSADN 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0598 DET_0598 "SNO glutamine amidotransferase family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 86/186 (46%), Positives = 112/186 (60%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M +GVLALQG+F EHI  L+ LG + VE+RK ++L  +S LIIPGGESTT+ +L     L
Sbjct:     1 MKIGVLALQGAFREHINMLRTLGAEAVEVRKAEELAELSGLIIPGGESTTITKLLYTFGL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                +++  + G PVWGTCAG+I LA +  G  + G + +  +D TV RN FG Q+ SFEA
Sbjct:    61 AKPVKDLARNGMPVWGTCAGMICLAKELSGD-ISGVKTLELMDITVRRNAFGRQVDSFEA 119

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP------VPSNKVLYSSSTV 174
              L V AL   EGG   F  VFIRAP V   G  V+VLA  P      V  N +L +S   
Sbjct:   120 MLKVKAL---EGGD--FPAVFIRAPLVEKTGQWVEVLAKLPDGTMVAVRENNLLATSFHP 174

Query:   175 EIQEEN 180
             E+  +N
Sbjct:   175 ELSADN 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000007180 AN6141 [Emericella nidulans (taxid:162425)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 93/216 (43%), Positives = 121/216 (56%)

Query:     1 MVVGVLALQGSFNEHIAALKR----LGVKG-------VEIRKPDQLQNVSSLIIPGGEST 49
             + VGVLALQG+F EH+  LK+    LG +        +EIR P +L+   +L++PGGEST
Sbjct:     4 ITVGVLALQGAFLEHLELLKKAAASLGSQQSSPQWEFLEIRTPQELKRCDALVLPGGEST 63

Query:    50 TMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108
              ++ +A   NL   LR+FVK+  KP WGTCAGLI LA  A   K GGQEL+GGLD  V+R
Sbjct:    64 AISLVAARSNLLEPLRDFVKVHRKPTWGTCAGLILLAESANRTKKGGQELIGGLDVRVNR 123

Query:   109 NFFGSQIQSFEAELSVPALASQEGGPET-FRGVFIRAPAVLDVGPDVD-VLADYPVPSNK 166
             N FG Q +SF+A L +P L S  G P+  F  VFIRAP V  + P  D +  D       
Sbjct:   124 NHFGRQTESFQAPLDLPFL-STSGTPQQPFPAVFIRAPVVEKILPHHDGIQVDEAKRVET 182

Query:   167 VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFH 202
             V+  S   E +       + V V     +L G A H
Sbjct:   183 VVAPSRQAESEASRRAMSRDVEVLA---SLPGRAAH 215

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008614 "pyridoxine metabolic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

CGD|CAL0006041 SNO1 [Candida albicans (taxid:5476)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 91/227 (40%), Positives = 127/227 (55%)

Query:     1 MVVGVLALQGSFNEHIAALKRL--------GVKGV---EIRKPDQLQNVSSLIIPGGEST 49
             + +GVLALQG+F EHIA  K L         V      E+R  + L+   SL+IPGGES+
Sbjct:     7 VTIGVLALQGAFREHIAYFKHLIESNPDEYAVYDFDIKEVRTKEDLELCDSLVIPGGESS 66

Query:    50 TMARLAEYHNLFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108
             +M+ +AE   L P L +FV    K VWGTCAGLIFL+ + +   +  Q ++G LD  V R
Sbjct:    67 SMSYIAERTELLPHLYKFVSDESKSVWGTCAGLIFLSKQLING-IENQRVLGALDIEVSR 125

Query:   109 NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVL 168
             N FG QI SFE  L   +      G   F  VFIRAP V  +    D L +  + SN   
Sbjct:   126 NAFGRQIDSFEQSLDFSSFIP---GCTDFPTVFIRAPVVTKILNQKDSLKEGVIRSNNSY 182

Query:   169 YSSSTVEIQ---EENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212
              + + V++    +     + ++IVAV+QG++LGT+FHPEL  D R++
Sbjct:   183 QNQAPVKVLYSLKNYDGKDHELIVAVQQGHILGTSFHPELAEDYRFH 229

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0008614 "pyridoxine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1I158	PDXT_DESAP	2, ., 6, ., -, ., -	0.4507	0.8418	0.9576	yes	no
B0REB6	PDXT_CLAMS	2, ., 6, ., -, ., -	0.4299	0.8604	0.8851	yes	no
A4IJ95	PDXT_GEOTN	2, ., 6, ., -, ., -	0.4232	0.8465	0.9333	yes	no
A9B890	PDXT_HERA2	2, ., 6, ., -, ., -	0.4325	0.8697	0.9842	yes	no
Q04F27	PDXT_OENOB	2, ., 6, ., -, ., -	0.4366	0.8325	0.9371	yes	no
A7Z0D4	PDXT_BACA2	2, ., 6, ., -, ., -	0.4279	0.8465	0.9285	yes	no
A5CS10	PDXT_CLAM3	2, ., 6, ., -, ., -	0.4299	0.8604	0.8851	yes	no
B7GFL9	PDXT_ANOFW	2, ., 6, ., -, ., -	0.4366	0.8372	0.9375	yes	no
A5FRL6	PDXT_DEHSB	2, ., 6, ., -, ., -	0.4139	0.8651	0.9538	yes	no
B7IS30	PDXT_BACC2	2, ., 6, ., -, ., -	0.4037	0.8372	0.9183	yes	no
Q0S1D2	PDXT_RHOSR	2, ., 6, ., -, ., -	0.4252	0.8883	0.9455	yes	no
B7IEZ6	PDXT_THEAB	2, ., 6, ., -, ., -	0.4	0.8465	0.9680	yes	no
Q5WKW1	PDXT_BACSK	2, ., 6, ., -, ., -	0.4465	0.8465	0.9333	yes	no
Q6AFB8	PDXT_LEIXX	2, ., 6, ., -, ., -	0.4741	0.8558	0.9292	yes	no
A7NQB7	PDXT_ROSCS	2, ., 6, ., -, ., -	0.4186	0.8651	0.9841	yes	no
B8H9E0	PDXT_ARTCA	2, ., 6, ., -, ., -	0.4253	0.9627	0.8771	yes	no
C5D338	PDXT_GEOSW	2, ., 6, ., -, ., -	0.4279	0.8465	0.9479	yes	no
Q8LAD0	PDX2_ARATH	2, ., 6, ., -, ., -	0.8790	1.0	0.8431	yes	no
Q47N39	PDXT_THEFY	2, ., 6, ., -, ., -	0.4507	0.8744	0.9353	yes	no
Q81JC5	PDXT_BACCR	2, ., 6, ., -, ., -	0.4037	0.8372	0.9183	yes	no
B9LIK4	PDXT_CHLSY	2, ., 6, ., -, ., -	0.4139	0.8697	0.9842	yes	no
A9WFU0	PDXT_CHLAA	2, ., 6, ., -, ., -	0.4139	0.8697	0.9842	yes	no
Q9KGN5	PDXT_BACHD	2, ., 6, ., -, ., -	0.4225	0.8372	0.9183	yes	no
Q81ZV5	PDXT_STRAW	2, ., 6, ., -, ., -	0.4345	0.8558	0.9154	yes	no
Q9WYU3	PDXT_THEMA	2, ., 6, ., -, ., -	0.3906	0.8511	0.9734	yes	no
B1W3G0	PDXT_STRGG	2, ., 6, ., -, ., -	0.4485	0.8558	0.9340	yes	no
A0JXB5	PDXT_ARTS2	2, ., 6, ., -, ., -	0.4208	0.9627	0.8771	yes	no
P37528	PDXT_BACSU	2, ., 6, ., -, ., -	0.4139	0.8465	0.9285	yes	no
Q65PL1	PDXT_BACLD	2, ., 6, ., -, ., -	0.4372	0.8465	0.9285	yes	no
Q3A8Q0	PDXT_CARHZ	2, ., 6, ., -, ., -	0.4279	0.8511	0.9581	yes	no
Q3ZX06	PDXT_DEHSC	2, ., 6, ., -, ., -	0.4139	0.8651	0.9538	yes	no
A6LP41	PDXT_THEM4	2, ., 6, ., -, ., -	0.4046	0.8465	0.9732	yes	no
A1SJA2	PDXT_NOCSJ	2, ., 6, ., -, ., -	0.4272	0.8697	0.9303	yes	no
A0LUK9	PDXT_ACIC1	2, ., 6, ., -, ., -	0.4788	0.8744	0.9082	yes	no
Q3Z8V9	PDXT_DEHE1	2, ., 6, ., -, ., -	0.4511	0.8651	0.9538	yes	no
C1B4C5	PDXT_RHOOB	2, ., 6, ., -, ., -	0.4205	0.8883	0.9455	yes	no
Q2RMI9	PDXT_MOOTA	2, ., 6, ., -, ., -	0.4372	0.8511	0.9734	yes	no
A5UY93	PDXT_ROSS1	2, ., 6, ., -, ., -	0.4232	0.8651	0.9841	yes	no
Q5L3Y1	PDXT_GEOKA	2, ., 6, ., -, ., -	0.4279	0.8465	0.9285	yes	no
B9IYH9	PDXT_BACCQ	2, ., 6, ., -, ., -	0.4037	0.8372	0.9183	yes	no
Q63HF7	PDXT_BACCZ	2, ., 6, ., -, ., -	0.4084	0.8372	0.9183	yes	no
A5D6D2	PDXT_PELTS	2, ., 6, ., -, ., -	0.4418	0.8511	0.9336	yes	no
B8G664	PDXT_CHLAD	2, ., 6, ., -, ., -	0.4232	0.8697	0.9842	yes	no
B7HII4	PDXT_BACC4	2, ., 6, ., -, ., -	0.4084	0.8372	0.9183	yes	no
Q1AWE7	PDXT_RUBXD	2, ., 6, ., -, ., -	0.4366	0.8372	0.8823	yes	no
A7GJS9	PDXT_BACCN	2, ., 6, ., -, ., -	0.4178	0.8372	0.9183	yes	no
A9VMA0	PDXT_BACWK	2, ., 6, ., -, ., -	0.4084	0.8372	0.9183	yes	no
A6WCI3	PDXT_KINRD	2, ., 6, ., -, ., -	0.4272	0.8837	0.9178	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
PLN02832	248	PLN02832, PLN02832, glutamine amidotransferase sub	1e-147
cd01749	183	cd01749, GATase1_PB, Glutamine Amidotransferase (G	3e-98
PRK13525	189	PRK13525, PRK13525, glutamine amidotransferase sub	4e-86
COG0311	194	COG0311, PDX2, Predicted glutamine amidotransferas	2e-80
PRK13527	200	PRK13527, PRK13527, glutamine amidotransferase sub	1e-74
TIGR03800	184	TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate	1e-65
pfam01174	188	pfam01174, SNO, SNO glutamine amidotransferase fam	9e-52
PRK13526	179	PRK13526, PRK13526, glutamine amidotransferase sub	3e-35
PRK13181	199	PRK13181, hisH, imidazole glycerol phosphate synth	1e-08
cd01748	198	cd01748, GATase1_IGP_Synthase, Type 1 glutamine am	1e-07
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	4e-07
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	6e-07
cd03130	198	cd03130, GATase1_CobB, Type 1 glutamine amidotrans	7e-07
PRK13141	205	PRK13141, hisH, imidazole glycerol phosphate synth	8e-06
COG0118	204	COG0118, HisH, Glutamine amidotransferase [Amino a	1e-05
pfam07685	157	pfam07685, GATase_3, CobB/CobQ-like glutamine amid	2e-05
PLN02617	538	PLN02617, PLN02617, imidazole glycerol phosphate s	3e-05
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	2e-04
PRK01175	261	PRK01175, PRK01175, phosphoribosylformylglycinamid	3e-04
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	3e-04
TIGR01855	196	TIGR01855, IMP_synth_hisH, imidazole glycerol phos	4e-04
PRK01077	451	PRK01077, PRK01077, cobyrinic acid a,c-diamide syn	6e-04
COG1797	451	COG1797, CobB, Cobyrinic acid a,c-diamide synthase	7e-04
PRK13152	201	PRK13152, hisH, imidazole glycerol phosphate synth	0.002

>gnl|CDD|215446 PLN02832, PLN02832, glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

 Score =  408 bits (1050), Expect = e-147
 Identities = 167/215 (77%), Positives = 184/215 (85%), Gaps = 6/215 (2%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLALQGSFNEHIAAL+RLGV+ VE+RKP+QL+ VS LIIPGGESTTMA+LAE HNL
Sbjct: 2   MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNL 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVK GKPVWGTCAGLIFLA +AVGQK GGQEL+GGLDCTVHRNFFGSQI SFE 
Sbjct: 62  FPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFET 121

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           EL VP LA+ EGGPETFR VFIRAPA+L VGP V+VLA+YP+PS K LYSSST      +
Sbjct: 122 ELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEYPLPSEKALYSSST------D 175

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
           A    KVIVAV+QGNLL TAFHPELTADTRW+  F
Sbjct: 176 AEGRDKVIVAVKQGNLLATAFHPELTADTRWHSYF 210

Length = 248

>gnl|CDD|153220 cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

 Score =  282 bits (725), Expect = 3e-98
 Identities = 108/213 (50%), Positives = 133/213 (62%), Gaps = 31/213 (14%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVLALQG F EHI AL+RLGV+ +E+R P+ L+ +  LIIPGGESTT+ +L     L  
Sbjct: 1   IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLD 60

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            LREF++ GKPV+GTCAGLI LA +   Q  GGQ L+G LD TV RN FG Q+ SFEA+L
Sbjct: 61  PLREFIRAGKPVFGTCAGLILLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADL 118

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
            +P L     G   F  VFIRAP + +VGP V+VLA+Y                      
Sbjct: 119 DIPGL-----GLGPFPAVFIRAPVIEEVGPGVEVLAEYD--------------------- 152

Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                IVAVRQGN+L T+FHPELT DTR +  F
Sbjct: 153 ---GKIVAVRQGNVLATSFHPELTDDTRIHEYF 182

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. Length = 183

>gnl|CDD|237411 PRK13525, PRK13525, glutamine amidotransferase subunit PdxT; Provisional

 Score =  252 bits (646), Expect = 4e-86
 Identities = 102/211 (48%), Positives = 125/211 (59%), Gaps = 33/211 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLALQG+  EH+AAL+ LG + VE+R+P+ L  +  LI+PGGESTTM +L     L
Sbjct: 2   MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGL 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF+  G PV+GTCAG+I LA +  G     QE +G LD TV RN FG Q+ SFEA
Sbjct: 62  LEPLREFIASGLPVFGTCAGMILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           EL +  L    G P  F  VFIRAP + +VGP V+VLA                      
Sbjct: 119 ELDIKGL----GEP--FPAVFIRAPYIEEVGPGVEVLATV-----------------GGR 155

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211
                  IVAVRQGN+L T+FHPELT DTR 
Sbjct: 156 -------IVAVRQGNILATSFHPELTDDTRV 179

Length = 189

>gnl|CDD|223388 COG0311, PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

 Score =  238 bits (609), Expect = 2e-80
 Identities = 97/213 (45%), Positives = 125/213 (58%), Gaps = 31/213 (14%)

Query: 1   MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHN 59
           M +GVLALQG+  EH+ AL++ G  + VE+++P+ L+ V  LIIPGGESTT+ RL + + 
Sbjct: 1   MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYG 60

Query: 60  LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
           L   LREF+  G PV+GTCAGLI LA + +      Q L+G LD TV RN FG Q+ SFE
Sbjct: 61  LLEPLREFIADGLPVFGTCAGLILLAKEILDGP--EQPLLGLLDVTVRRNAFGRQVDSFE 118

Query: 120 AELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEE 179
            EL +       G P  F  VFIRAP + +VG  V+VLA                     
Sbjct: 119 TELDIEGF----GLPFPFPAVFIRAPVIEEVGDGVEVLATLD------------------ 156

Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212
                   IVAV+QGN+L T+FHPELT DTR +
Sbjct: 157 ------GRIVAVKQGNILATSFHPELTDDTRLH 183

Length = 194

>gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT; Provisional

 Score =  223 bits (572), Expect = 1e-74
 Identities = 98/218 (44%), Positives = 122/218 (55%), Gaps = 38/218 (17%)

Query: 1   MVVGVLALQGSFNEHIAALKR----LGVKG--VEIRKPDQLQNVSSLIIPGGESTTMARL 54
           M +GVLALQG   EHI ALKR    LG+ G  VE+R+P  L +  +LIIPGGESTT+ RL
Sbjct: 1   MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRL 60

Query: 55  AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG--QELVGGLDCTVHRNFFG 112
            +   +   ++E ++ G P+ GTCAGLI LA +    ++    Q L+G +D TV RN FG
Sbjct: 61  MKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFG 120

Query: 113 SQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSS 172
            Q  SFEAE+ +       G    F  VFIRAPA+  VG DV+VLA              
Sbjct: 121 RQRDSFEAEIDL------SGLDGPFHAVFIRAPAITKVGGDVEVLAKLD----------- 163

Query: 173 TVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210
                          IVAV QGN+L TAFHPELT DTR
Sbjct: 164 -------------DRIVAVEQGNVLATAFHPELTDDTR 188

Length = 200

>gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

 Score =  200 bits (510), Expect = 1e-65
 Identities = 96/209 (45%), Positives = 130/209 (62%), Gaps = 32/209 (15%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
            +GVLALQG+  EH  AL+ LGV+GVE+++P+QL  +  LIIPGGESTT++RL + + +F
Sbjct: 1   KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMF 60

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
             LR F+  G PV+GTCAGLI LA + +GQK   +  +G LD TV RN +G Q+ SFEAE
Sbjct: 61  EPLRNFILSGLPVFGTCAGLIMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAE 117

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENA 181
           + +  +     G +   GVFIRAP ++ VG  V++LA      N+               
Sbjct: 118 VDIKGV-----GDDPITGVFIRAPKIVSVGNGVEILAKV---GNR--------------- 154

Query: 182 MPEKKVIVAVRQGNLLGTAFHPELTADTR 210
                 IVAVRQGN+L ++FHPELT D R
Sbjct: 155 ------IVAVRQGNILVSSFHPELTDDHR 177

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 184

>gnl|CDD|201639 pfam01174, SNO, SNO glutamine amidotransferase family

 Score =  165 bits (418), Expect = 9e-52
 Identities = 81/218 (37%), Positives = 111/218 (50%), Gaps = 44/218 (20%)

Query: 5   VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64
           VLALQG+  EH  A+K+ G +   +++P+ L    +LIIPGGEST M+ LA+ +  +  L
Sbjct: 1   VLALQGAVEEHEEAIKKCGAENKTVKRPEDLAQCDALIIPGGESTAMSLLAKRYGFYEPL 60

Query: 65  REFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQEL--VGGLDCTVHRNFFGSQIQSFEAE 121
            EFV    KP+WGTCAGLI L+     ++LG + +  +G L  TV RN FG Q+ SFE E
Sbjct: 61  YEFVHNPNKPIWGTCAGLILLS-----KQLGNELVKTLGLLKVTVKRNAFGRQVDSFEKE 115

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEE 179
                L         F GVFIRAP + ++     V VL +                    
Sbjct: 116 CDFKNLI------PKFPGVFIRAPVIEEILDPEVVVVLYELDGK---------------- 153

Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTAD----TRWYI 213
                   IV  +QGN+L T+FHPEL  D      W++
Sbjct: 154 --------IVVAKQGNILATSFHPELAEDDYRVHDWFV 183

This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680. Length = 188

>gnl|CDD|184113 PRK13526, PRK13526, glutamine amidotransferase subunit PdxT; Provisional

 Score =  122 bits (307), Expect = 3e-35
 Identities = 74/207 (35%), Positives = 102/207 (49%), Gaps = 41/207 (19%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           VGVLA+QG + +H    K LGV+   ++  +   ++  L+IPGGESTT+  L   H +F 
Sbjct: 5   VGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFD 64

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            L  F    KPV+GTCAG I L+         G+  +  LD  V RN +G Q+ SF A++
Sbjct: 65  KLYNFCSS-KPVFGTCAGSIILSK--------GEGYLNLLDLEVQRNAYGRQVDSFVADI 115

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
           S           +   GVFIRAP  + VG  VD+L+ Y                      
Sbjct: 116 SFND--------KNITGVFIRAPKFIVVGNQVDILSKY-------------------QNS 148

Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADT 209
           P     V +RQ N+L ++FHPELT D 
Sbjct: 149 P-----VLLRQANILVSSFHPELTQDP 170

Length = 179

>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 49/194 (25%), Positives = 72/194 (37%), Gaps = 35/194 (18%)

Query: 18  ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
           ALKRLGV+ V    P+++     +I+PG G     M  L E   L  AL+E V+  +PV 
Sbjct: 18  ALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVL 76

Query: 76  GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE-LSVPAL----ASQ 130
           G C G+  L           +E  G +            ++ F +E L VP +       
Sbjct: 77  GICLGMQLLFE-------SSEE--GNVKGL---GLIPGDVKRFRSEPLKVPQMGWNSVKP 124

Query: 131 EGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVA 190
                 F+G        ++ G     +  Y VP        +T E              A
Sbjct: 125 LKESPLFKG--------IEEGSYFYFVHSYYVPCEDPEDVLATTEYGVPFC-------SA 169

Query: 191 VRQGNLLGTAFHPE 204
           V + N+    FHPE
Sbjct: 170 VAKDNIYAVQFHPE 183

Length = 199

>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 50/198 (25%), Positives = 72/198 (36%), Gaps = 41/198 (20%)

Query: 18  ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
           AL+RLG + +    P+++ +   LI+PG G     MA L E   L  AL+E +  GKP  
Sbjct: 17  ALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRE-RGLIEALKEAIASGKPFL 75

Query: 76  GTCAGLIFLANKAVGQKLGGQE--LVGGLDCTVHRNFFGSQIQSF--EAELSVP-----A 126
           G C G+  L           +E     GL           ++  F     L VP      
Sbjct: 76  GICLGMQLLFE-------SSEEGGGTKGLG------LIPGKVVRFPASEGLKVPHMGWNQ 122

Query: 127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKK 186
           L   +  P             +  G     +  Y  P +   Y  +T +          K
Sbjct: 123 LEITKESPLFKG---------IPDGSYFYFVHSYYAPPDDPDYILATTDY-------GGK 166

Query: 187 VIVAVRQGNLLGTAFHPE 204
              AV + N+ GT FHPE
Sbjct: 167 FPAAVEKDNIFGTQFHPE 184

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 198

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 3  VGVLALQGSFNE----HIAALKRLGVK-------GVEIRKPDQLQNVSSLIIPGGESTTM 51
          V VL   GS        + AL+  G +       G  +     L +   LI+PGG  T  
Sbjct: 1  VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84
            LA    L   LRE    GKPV G C G   L
Sbjct: 61 D-LAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 3  VGVLALQGSFNE----HIAALKRLGVK-------GVEIRKPDQLQNVSSLIIPGGESTTM 51
          V VL   G         + AL+  G +       G  +     L +   LI+PGG  T  
Sbjct: 1  VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84
            LA    L   LRE    GKP+ G C G   L
Sbjct: 61 D-LARDEALLALLREAAAAGKPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153224 cd03130, GATase1_CobB, Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 14  EHIAALKRLGVKGVEIR--KPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVK 69
           E++  L+  G + V     K ++L +   L + GG  E      L+   ++  ++R F +
Sbjct: 15  ENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPE-LFAEELSANQSMRESIRAFAE 73

Query: 70  MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTV 106
            G P++  C GL++L      ++     + G L    
Sbjct: 74  SGGPIYAECGGLMYLGESLDDEEGQSYPMAGVLPGDA 110

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. Length = 198

>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG----GESTTMARLAEYHNLFPALREFVKMGKP 73
          AL+RLG + V    P+++     +I+PG     +   MA L     L   ++E V  GKP
Sbjct: 18 ALERLGAEAVITSDPEEILAADGVILPGVGAFPD--AMANL-RERGLDEVIKEAVASGKP 74

Query: 74 VWGTCAGL 81
          + G C G+
Sbjct: 75 LLGICLGM 82

Length = 205

>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism]

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 58/205 (28%), Positives = 80/205 (39%), Gaps = 56/205 (27%)

Query: 18  ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
           AL+RLG + V  R P+++     LI+PG G     MA L E   L  A++E V+ GKP  
Sbjct: 20  ALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFL 78

Query: 76  GTCAGLIFLANKAVGQKLGGQE--LVGGLDCTVHRNFFGSQIQSFEAE-LSVP-----AL 127
           G C G+  L  +        +E   V GL           ++  F AE L VP      +
Sbjct: 79  GICLGMQLLFER-------SEEGGGVKGL------GLIPGKVVRFPAEDLKVPHMGWNQV 125

Query: 128 ASQEGGPETFRGV-------FIRAPAVLDVGPDVDVL-ADYPVPSNKVLYSSSTVEIQEE 179
               G P  F+G+       F+ +  V    P+  V   DY  P                
Sbjct: 126 EFVRGHP-LFKGIPDGAYFYFVHSYYVPPGNPETVVATTDYGEP---------------- 168

Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPE 204
                     AV + N+ GT FHPE
Sbjct: 169 -------FPAAVAKDNVFGTQFHPE 186

Length = 204

>gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase domain

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 31  KPDQLQNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGKPVWGTCAGLIFLANKAV 89
                 +   +I+PGG+ T        ++ L  ALRE  + G P+ G C G   L    +
Sbjct: 1   DDALPGDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLGETII 60

Query: 90  GQKLGGQ-----ELVGGLDCTVH 107
               G       E +G LD    
Sbjct: 61  DGIEGTAGGERVEGLGLLDIETV 83

Length = 157

>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 40/203 (19%)

Query: 18  ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWG 76
           A++ LG    +++ P+ + N   LI PG G   +   +     +  ALRE+++  +P  G
Sbjct: 25  AIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLG 84

Query: 77  TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVP-----ALASQE 131
            C GL  L      ++ G  E +G +   V R  F S        L VP     AL   +
Sbjct: 85  ICLGLQLLFES--SEENGPVEGLGVIPGVVGR--FDSS-----NGLRVPHIGWNALQITK 135

Query: 132 GGPETFRGVFIRAPAVLDVGPDVDV--LADY---PVPSNKVLYSSSTVEIQEENAMPEKK 186
                          +LD      V  +  Y   P   NK  +  +T     E       
Sbjct: 136 DSE------------LLDGVGGRHVYFVHSYRATPSDENKD-WVLATCNYGGE------- 175

Query: 187 VIVAVRQGNLLGTAFHPELTADT 209
            I +VR+GN+    FHPE +  T
Sbjct: 176 FIASVRKGNVHAVQFHPEKSGAT 198

Length = 538

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 1  MVVGVLALQGSFNEH--IAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGES-------TT 50
          M V V+   G+  +   + AL+ LGV    +   D  L +   +++PGG S         
Sbjct: 1  MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGA 60

Query: 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
          +A  +    +   +REF + G PV G C G
Sbjct: 61 IAAASP---IMQEVREFAEKGVPVLGICNG 87

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 19/97 (19%)

Query: 1  MVVGVLALQGSFNEH--IAALKRLGVKG--VEI----RKPDQLQNVSSLIIPGGESTT-- 50
          + V VL ++G+  E   + A +RLGV+   V I     +   + +   L+IPGG S    
Sbjct: 4  IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDY 63

Query: 51 -------MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
                  ARL     L   + EF+  G P+ G C G
Sbjct: 64 IRAGAIFAARLKAV--LRKDIEEFIDEGYPIIGICNG 98

Length = 261

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 37  NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89
           +   LI+PGG+S       E  +L   +R+ +K GKPV   C   + LA   +
Sbjct: 60  DYDLLILPGGDSWDNP---EAPDLAGLVRQALKQGKPVAAICGATLALARAGL 109

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 37/199 (18%)

Query: 18  ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEY-HNLFPALREFVKMGKPV 74
           ALKR+G + V ++   + +    LI+PG G     MARL E   +LF  L   V++GKPV
Sbjct: 17  ALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLRENGLDLFVELV--VRLGKPV 74

Query: 75  WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGP 134
            G C G+  L  +   ++ GG   +G              +   EA   VP +    G  
Sbjct: 75  LGICLGMQLLFER--SEEGGGVPGLG---------LIKGNVVKLEAR-KVPHM----GWN 118

Query: 135 ETFRGVFIRAPAVL---DVGPDVDVLADYPVP-SNKVLYSSSTVEIQEENAMPEKKVIVA 190
           E      ++   +L   D G     +  Y      + + + +             K   A
Sbjct: 119 EVH---PVKESPLLNGIDEGAYFYFVHSYYAVCEEEAVLAYADYGE---------KFPAA 166

Query: 191 VRQGNLLGTAFHPELTADT 209
           V++GN+ GT FHPE +  T
Sbjct: 167 VQKGNIFGTQFHPEKSGKT 185

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196

>gnl|CDD|234896 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 23/138 (16%)

Query: 14  EHIAALKRLGVKGVEIR-----KPDQLQNVSSLIIPGG--ESTTM--ARLAEYHNLFPAL 64
           E++  L+  G    E+        + L +   L + GG  E   +  A LA   ++  ++
Sbjct: 262 ENLELLRAAGA---ELVFFSPLADEALPDCDGLYLGGGYPE---LFAAELAANTSMRASI 315

Query: 65  REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF---EAE 121
           R     GKP++  C GL++L             +VG L           ++Q+    EAE
Sbjct: 316 RAAAAAGKPIYAECGGLMYLGESLEDADGERHPMVGLLPGEAS---MTKRLQALGYREAE 372

Query: 122 LSVPALASQEGGPETFRG 139
                L  + G  E  RG
Sbjct: 373 ALEDTLLGKAG--ERLRG 388

Length = 451

>gnl|CDD|224710 COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 6   LALQGSFN----EHIAALKRLGVKGVE---IRKPDQLQNVSSLIIPGGESTTMA-RLAEY 57
           +A   +FN    E++  L+  G + V    +   +   +V ++ + GG     A  L+  
Sbjct: 250 VARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSAN 309

Query: 58  HNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQS 117
            ++  A++ F   GKP++  C GL++L            E+VG L  +        ++Q+
Sbjct: 310 ESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGST---RMTKRLQA 366

Query: 118 F---EAELSVPALASQEGGPETFRG 139
               EAE     L  + G  E  RG
Sbjct: 367 LGYREAEAVDDTLLLRAG--EKIRG 389

Length = 451

>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 37/208 (17%)

Query: 10  GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREF 67
           G+ N    A +++G      + P  LQ    L++PG  S    M  L E      AL+E 
Sbjct: 10  GNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKELG-FIEALKEQ 68

Query: 68  VKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA--ELSV 124
           V + K P+ G C G+     +  G + G  E +G         F   ++  FE    L +
Sbjct: 69  VLVQKKPILGICLGMQLFLER--GYEGGVCEGLG---------FIEGEVVKFEEDLNLKI 117

Query: 125 PALASQE----GGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           P +   E         ++G        +    D      Y V S    Y     E     
Sbjct: 118 PHMGWNELEILKQSPLYQG--------IPEKSDF-----YFVHS---FYVKCKDEFVSAK 161

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTAD 208
           A    K + ++++ N+  T FHPE + +
Sbjct: 162 AQYGHKFVASLQKDNIFATQFHPEKSQN 189

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	100.0
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	100.0
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	100.0
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	100.0
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	100.0
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	100.0
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	100.0
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	100.0
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	100.0
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	100.0
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	100.0
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	100.0
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	100.0
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	100.0
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	100.0
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	100.0
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.98
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.98
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	99.98
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.98
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.97
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.97
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	99.96
PRK06895	190	putative anthranilate synthase component II; Provi	99.96
PRK06490	239	glutamine amidotransferase; Provisional	99.96
PRK08250	235	glutamine amidotransferase; Provisional	99.95
PRK07053	234	glutamine amidotransferase; Provisional	99.95
PRK05665	240	amidotransferase; Provisional	99.95
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.95
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.94
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.94
PRK09065	237	glutamine amidotransferase; Provisional	99.94
PRK00758	184	GMP synthase subunit A; Validated	99.94
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.93
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.93
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.93
PLN02347	536	GMP synthetase	99.93
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.92
PRK07567	242	glutamine amidotransferase; Provisional	99.92
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.92
CHL00101	190	trpG anthranilate synthase component 2	99.92
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.92
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.91
PRK05670	189	anthranilate synthase component II; Provisional	99.91
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.91
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.91
PRK00074	511	guaA GMP synthase; Reviewed	99.9
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.9
PRK05637	208	anthranilate synthase component II; Provisional	99.9
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.89
PRK13566	720	anthranilate synthase; Provisional	99.89
PLN02335	222	anthranilate synthase	99.88
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.87
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.86
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.85
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.83
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.83
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.82
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.82
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.81
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.81
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.81
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.8
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.8
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.78
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.78
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	99.78
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.77
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.76
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.76
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.75
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.74
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.73
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.7
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	99.69
PRK06186	229	hypothetical protein; Validated	99.68
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	99.66
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.65
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.63
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	99.61
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.6
PRK05380	533	pyrG CTP synthetase; Validated	99.6
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.59
COG2071	243	Predicted glutamine amidotransferases [General fun	99.57
PLN02327	557	CTP synthase	99.53
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.5
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	99.48
PRK00784	488	cobyric acid synthase; Provisional	99.48
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	99.47
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	99.46
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	99.45
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	99.4
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	99.39
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	99.36
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	99.35
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	99.34
TIGR00313	475	cobQ cobyric acid synthase CobQ.	99.31
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.29
PHA03366	1304	FGAM-synthase; Provisional	99.28
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	99.26
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	99.22
COG3442	250	Predicted glutamine amidotransferase [General func	99.18
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	99.16
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	99.13
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	99.13
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.06
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	98.9
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	98.84
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	98.83
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	98.75
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	98.75
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	98.74
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.72
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	98.71
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	98.66
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.65
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	98.6
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	98.52
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	98.5
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.48
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	98.48
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	98.42
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	98.42
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	98.37
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	98.33
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	98.33
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	98.32
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	98.31
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	98.29
PRK11249	752	katE hydroperoxidase II; Provisional	98.23
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	98.21
PRK04155	287	chaperone protein HchA; Provisional	98.18
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	98.17
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	98.1
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	98.06
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	97.97
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	97.93
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	97.93
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	97.85
COG4285	253	Uncharacterized conserved protein [Function unknow	97.78
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	97.72
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	97.65
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	97.56
KOG2764	247	consensus Putative transcriptional regulator DJ-1	97.48
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	97.17
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	97.17
COG4977	328	Transcriptional regulator containing an amidase do	97.07
COG3155	217	ElbB Uncharacterized protein involved in an early	96.58
PRK01911	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.09
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	94.44
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.32
PRK03094	80	hypothetical protein; Provisional	93.7
PRK02649	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	93.28
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	92.99
PRK14077	287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	92.09
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.96
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.82
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.67
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	91.45
COG4090	154	Uncharacterized protein conserved in archaea [Func	91.43
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	91.39
PRK04885	265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.17
PRK14075	256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	90.73
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	90.65
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	90.54
COG4635	175	HemG Flavodoxin [Energy production and conversion	90.31
PRK14076	569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	90.21
COG4242	293	CphB Cyanophycinase and related exopeptidases [Sec	89.97
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	88.22
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	88.2
PLN02929	301	NADH kinase	87.36
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	87.32
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	85.92
PRK01185	271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	85.53
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	85.08
PRK09271	160	flavodoxin; Provisional	83.24
PRK06455	155	riboflavin synthase; Provisional	82.52
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	81.53
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	80.03

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-49  Score=315.47  Aligned_cols=188  Identities=28%  Similarity=0.422  Sum_probs=165.2

Q ss_pred             CEEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-C-CcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G-~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |+|+|+++ .||+.|+.++|+++|++++++++++++.++|.||+|| | +.+.|+.|.. .++.+.|+++++.++|+|||
T Consensus         2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~-~gl~~~i~~~~~~~kP~LGI   80 (204)
T COG0118           2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRE-RGLIEAIKEAVESGKPFLGI   80 (204)
T ss_pred             CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHh-cchHHHHHHHHhcCCCEEEE
Confidence            59999998 6799999999999999999999999999999999999 6 6788999987 59999999999999999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD  155 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~  155 (215)
                      |+|||||.+.+.+.  +..++||+++++|.|.+.        ..+++||||||++...      ..+|+|+++++  +||
T Consensus        81 ClGMQlLfe~SeE~--~~~~GLg~i~G~V~r~~~--------~~~kvPHMGWN~l~~~------~~~~l~~gi~~~~~~Y  144 (204)
T COG0118          81 CLGMQLLFERSEEG--GGVKGLGLIPGKVVRFPA--------EDLKVPHMGWNQVEFV------RGHPLFKGIPDGAYFY  144 (204)
T ss_pred             eHhHHhhhhccccc--CCCCCcceecceEEEcCC--------CCCCCCccccceeecc------CCChhhcCCCCCCEEE
Confidence            99999999998763  244899999999999641        2268999999998752      37899999965  899


Q ss_pred             EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010          156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY  212 (215)
Q Consensus       156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~  212 (215)
                      |+|||++.+..++  .++++++|+     ..|.+++.++|++|+|||||||++.|+-
T Consensus       145 FVHSY~~~~~~~~--~v~~~~~YG-----~~f~AaV~k~N~~g~QFHPEKSg~~Gl~  194 (204)
T COG0118         145 FVHSYYVPPGNPE--TVVATTDYG-----EPFPAAVAKDNVFGTQFHPEKSGKAGLK  194 (204)
T ss_pred             EEEEEeecCCCCc--eEEEeccCC-----CeeEEEEEeCCEEEEecCcccchHHHHH
Confidence            9999998864443  588999998     5799999999999999999999998863

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=100.00  E-value=5.9e-48  Score=321.31  Aligned_cols=209  Identities=78%  Similarity=1.233  Sum_probs=184.5

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+||+++|++.++.++|+++|++++++++++++.++|+||||||+++.+..+....++.+.|++++++|+|+||||+|
T Consensus         2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~G   81 (248)
T PLN02832          2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAG   81 (248)
T ss_pred             cEEEEEeCCCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChh
Confidence            69999999999999999999999999999999999999999999999988888876557899999999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEe
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~  160 (215)
                      ||+|++.+.+...++.+.+|.+|.+|.||.+|+|+.||+..+++|++|||++.+..+.++|++.|.+....+++|++|||
T Consensus        82 mqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy  161 (248)
T PLN02832         82 LIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEY  161 (248)
T ss_pred             HHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccccceEEecCCceEeCCCcEEEEEEe
Confidence            99999998542112356799999999999999999999988899999999886445788899999887778899999999


Q ss_pred             eCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       161 ~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      .......+  ..+|+++|+    ...+++++++||++|+|||||+|++.++|+||
T Consensus       162 ~~~~~~~~--~~~a~~~y~----~~~~~~aV~qgnvlatqFHPEls~d~rih~~F  210 (248)
T PLN02832        162 PLPSEKAL--YSSSTDAEG----RDKVIVAVKQGNLLATAFHPELTADTRWHSYF  210 (248)
T ss_pred             cccccccc--ccccccccc----CCceEEEEEeCCEEEEEccCccCCccHHHHHH
Confidence            86544332  578899997    23689999999999999999999999999997

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=100.00  E-value=4.7e-40  Score=265.14  Aligned_cols=176  Identities=20%  Similarity=0.325  Sum_probs=146.9

Q ss_pred             EEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC-C-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG-~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      .|+|+++. ||+.++.++|+++|++++++++++++.++|+||+||+ . .+.+..+.+ .++.+.|++  +.++|+||||
T Consensus         1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC   77 (192)
T PRK13142          1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC   77 (192)
T ss_pred             CEEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence            18999984 5999999999999999999999999999999999996 3 456777765 678899988  5799999999


Q ss_pred             hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEE
Q 028010           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA  158 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~H  158 (215)
                      +|||+|++.+.+   +..++||++|++|.|.         +..+++|+||||.+..        ..++++   .++||+|
T Consensus        78 lGmQlL~~~~~e---g~~~GLgll~~~V~rf---------~~~~~vph~GWn~~~~--------~~~l~~---~~~yFVh  134 (192)
T PRK13142         78 LGMQLMYEHSDE---GDASGLGFIPGNISRI---------QTEYPVPHLGWNNLVS--------KHPMLN---QDVYFVH  134 (192)
T ss_pred             HHHHHHhhhccc---CCcCccCceeEEEEEC---------CCCCCCCcccccccCC--------CCcccc---cEEEEEC
Confidence            999999999854   3578999999999994         3346799999998752        345554   5799999


Q ss_pred             EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010          159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY  212 (215)
Q Consensus       159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~  212 (215)
                      ||++. . ..  .++++++|+     ..+.++++++|++|+|||||+|++.|+.
T Consensus       135 Sy~v~-~-~~--~v~~~~~yg-----~~~~~~v~~~n~~g~QFHPEkS~~~G~~  179 (192)
T PRK13142        135 SYQAP-M-SE--NVIAYAQYG-----ADIPAIVQFNNYIGIQFHPEKSGTYGLQ  179 (192)
T ss_pred             CCeEC-C-CC--CEEEEEECC-----CeEEEEEEcCCEEEEecCcccCcHhHHH
Confidence            99883 2 22  578999997     4688999999999999999999998875

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=100.00  E-value=9.5e-39  Score=250.42  Aligned_cols=185  Identities=52%  Similarity=0.842  Sum_probs=161.7

Q ss_pred             CEEEEEecCCChHHHHHHHHHCC-CeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010            1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G-~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      |||+||++||++.++.+++++++ +++..++.+++++.+|+||||||.++++..|....++.+.|++++++|+|++|.|+
T Consensus         1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCA   80 (194)
T COG0311           1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCA   80 (194)
T ss_pred             CeEEEEEecccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEech
Confidence            89999999999999999999995 99999999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEE
Q 028010           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD  159 (215)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs  159 (215)
                      |+.+||+...++  ...+.||++|.+|.||+||||+.||+.+..+...+-    +-+++++|++.|.+..+.+.+.++.+
T Consensus        81 GlIlLakei~~~--~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~----~~~~~avFIRAP~I~~vg~~V~vLa~  154 (194)
T COG0311          81 GLILLAKEILDG--PEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGL----PFPFPAVFIRAPVIEEVGDGVEVLAT  154 (194)
T ss_pred             hhhhhhhhhcCC--CCCcccceEEEEEEccccccccccceeeEEeecccC----CCcceEEEEEcceeehhcCcceEeee
Confidence            999999987631  356789999999999999999999998777665552    11146789999999888655555555


Q ss_pred             eeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       160 ~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      +                +        ..+.+++++|++|+.||||+|.+.|+|+||
T Consensus       155 l----------------~--------~~iVav~qgn~LatsFHPELT~D~r~Heyf  186 (194)
T COG0311         155 L----------------D--------GRIVAVKQGNILATSFHPELTDDTRLHEYF  186 (194)
T ss_pred             e----------------C--------CEEEEEEeCCEEEEecCccccCCccHHHHH
Confidence            3                2        257888999999999999999999999997

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=100.00  E-value=9.4e-39  Score=261.92  Aligned_cols=194  Identities=19%  Similarity=0.287  Sum_probs=151.9

Q ss_pred             CEEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |||+|++++ ||+.++.++|+++|+++++++++++++++|+||+||+.  ...+..+.+ .++.+.|++++++++|+|||
T Consensus         2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGI   80 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGI   80 (210)
T ss_pred             cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEE
Confidence            699999998 89999999999999999999988888899999999943  356677754 58889999999999999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD  155 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~  155 (215)
                      |+|||+|++.+++   +..+++|+++++|.+.+.       ....++|||||+.+..+.-.....++++|+++++  .+|
T Consensus        81 ClG~Qll~~~~~~---~~~~glg~~~G~v~~~~~-------~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~  150 (210)
T CHL00188         81 CLGLHLLFETSEE---GKEEGLGIYKGQVKRLKH-------SPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAY  150 (210)
T ss_pred             CHHHHHHhhcccc---CCcCCccceeEEEEECCC-------CCCCccCccCCccceecCCcccccCChhhcCCCCCCEEE
Confidence            9999999998865   467899999999998631       2235799999999875320000001569999965  489


Q ss_pred             EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010          156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW  211 (215)
Q Consensus       156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~  211 (215)
                      ++|||.+.+...  ..+++++.|+    .+.++++++.+++||+|||||++.+.|.
T Consensus       151 ~~HS~~v~p~~~--~~l~~t~~~~----~~~~v~a~~~~~i~GvQFHPE~s~~~G~  200 (210)
T CHL00188        151 FVHSYGVMPKSQ--ACATTTTFYG----KQQMVAAIEYDNIFAMQFHPEKSGEFGL  200 (210)
T ss_pred             EeCccEecCCCC--ceEEEEEecC----CcceEEEEecCCEEEEecCCccccHhHH
Confidence            999997753222  1344555553    1467899999999999999999987764

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=100.00  E-value=3.5e-37  Score=244.83  Aligned_cols=174  Identities=42%  Similarity=0.704  Sum_probs=150.4

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+||+++|++.+..++|+++|+++.+++.+++++++|+||+|||.++.+..+..+.++.+.|+++.+ ++|++|||+|
T Consensus         3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG   81 (179)
T PRK13526          3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAG   81 (179)
T ss_pred             cEEEEEECCccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHH
Confidence            699999999999999999999999999999999999999999999966544344444688999999885 7899999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEe
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~  160 (215)
                      +|+|++..        ++||++|++|.+|.+|+|..||.....++     .+   +++++|++.|.+..+++.+.++.+|
T Consensus        82 ~qlL~~~s--------~~Lg~idg~V~Rn~~Grq~~sf~~~~~~~-----~~---~~~~vFiRAP~i~~~~~~v~vla~~  145 (179)
T PRK13526         82 SIILSKGE--------GYLNLLDLEVQRNAYGRQVDSFVADISFN-----DK---NITGVFIRAPKFIVVGNQVDILSKY  145 (179)
T ss_pred             HHHHHccC--------CCCCCccEEEEEcCCCCccceeeeecCcC-----Cc---eEEEEEEcCceEeEcCCCcEEEEEE
Confidence            99999852        46999999999999999999997655443     22   2789999999999888887777776


Q ss_pred             eCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       161 ~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      .                        ..+.+++++|++|+.||||+|.|.|+|+||
T Consensus       146 ~------------------------~~~v~v~q~~~l~~~FHPElt~d~r~h~~f  176 (179)
T PRK13526        146 Q------------------------NSPVLLRQANILVSSFHPELTQDPTVHEYF  176 (179)
T ss_pred             C------------------------CEEEEEEECCEEEEEeCCccCCCchHHHHH
Confidence            2                        246789999999999999999999999998

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=100.00  E-value=4e-37  Score=243.68  Aligned_cols=178  Identities=60%  Similarity=0.971  Sum_probs=148.0

Q ss_pred             EEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC-CcEEEEehHHHH
Q 028010            5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIF   83 (215)
Q Consensus         5 il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~-~PilGIC~G~Ql   83 (215)
                      ||++||++.+..+.|+++|.+...++.+++++++|+||||||.++++..+....++.+.|+++++.| +|++|+|+|+.|
T Consensus         1 VLALQG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl   80 (188)
T PF01174_consen    1 VLALQGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL   80 (188)
T ss_dssp             EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred             CCccccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence            7999999999999999999999999999999999999999999999998888889999999999998 999999999999


Q ss_pred             HHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC--CCeEEEEEee
Q 028010           84 LANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--PDVDVLADYP  161 (215)
Q Consensus        84 La~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~--~~~~~~Hs~~  161 (215)
                      ||+...+.   +.+.||++|.+|.||+||+|..||+....+|.++      .+++++|++.|.+..+.  +.+.++..+ 
T Consensus        81 La~~v~~~---~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~------~~~~avFIRAP~I~~v~~~~~v~vla~~-  150 (188)
T PF01174_consen   81 LAKEVEGQ---GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLG------EPFPAVFIRAPVIEEVGSPEGVEVLAEL-  150 (188)
T ss_dssp             HEEEECSS---CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTE------SEEEEEESS--EEEEE--TTTEEEEEEE-
T ss_pred             hhhhhhhc---ccccccceeEEEEccccccchhcEEEEEEeecCC------CcEEEEEcCCcEEEEeeccccccccccc-
Confidence            99998653   5677999999999999999999999988888776      23789999999999885  344444433 


Q ss_pred             CCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC-CcccccC
Q 028010          162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWYIIF  215 (215)
Q Consensus       162 ~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~-~~~~~~~  215 (215)
                                     +        ..+.+++++|++++.||||+|.+ .|+|+||
T Consensus       151 ---------------~--------g~iVav~qgn~latsFHPELT~D~~r~H~yF  182 (188)
T PF01174_consen  151 ---------------D--------GKIVAVRQGNILATSFHPELTDDDTRIHEYF  182 (188)
T ss_dssp             ---------------T--------TEEEEEEETTEEEESS-GGGSSTHCHHHHHH
T ss_pred             ---------------c--------cceEEEEecCEEEEEeCCcccCchhHHHHHH
Confidence                           2        24677889999999999999999 9999998

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=100.00  E-value=1.1e-36  Score=249.63  Aligned_cols=192  Identities=19%  Similarity=0.290  Sum_probs=149.1

Q ss_pred             EEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      .|+|+++ .||..|+.++|+..+.++..++.++++.++|+||+||+.  ...+.++.. .++.+.|++++++++|+||||
T Consensus         1 ~i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pilGiC   79 (210)
T PRK14004          1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNS-TGLRSTIDKHVESGKPLFGIC   79 (210)
T ss_pred             CEEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHcCCCEEEEC
Confidence            0899998 458999999999999999999999999999999999964  456777754 689999999999999999999


Q ss_pred             hHHHHHHHhhccCCC----CCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010           79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      +|||+|++++++...    +..++||+++++|.+.+.        ...++||+||+.+..++  .  ..+++|+++++  
T Consensus        80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~--------~~~~~ph~Gw~~v~~~~--~--~~~~lf~~l~~~~  147 (210)
T PRK14004         80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEG--------KDFKVPHIGWNRLQIRR--K--DKSKLLKGIGDQS  147 (210)
T ss_pred             HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCC--------CCCcCCccCcccceecc--C--CCCccccCCCCCC
Confidence            999999999976321    236899999999998641        12468999999886421  0  26789999965  


Q ss_pred             CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010          153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY  212 (215)
Q Consensus       153 ~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~  212 (215)
                      ++|++|||....... . .+.+.++|+    +..+++++.++|+||+|||||++.+.|..
T Consensus       148 ~v~~~HS~~~~~~~~-l-~~sa~~~~~----g~~~~a~~~~~~i~GvQFHPE~s~~~G~~  201 (210)
T PRK14004        148 FFYFIHSYRPTGAEG-N-AITGLCDYY----QEKFPAVVEKENIFGTQFHPEKSHTHGLK  201 (210)
T ss_pred             EEEEeceeecCCCCc-c-eEEEeeeEC----CEEEEEEEecCCEEEEeCCcccCchhHHH
Confidence            578899985422111 1 234555552    13466777888999999999999977653

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=100.00  E-value=5.8e-36  Score=243.32  Aligned_cols=182  Identities=23%  Similarity=0.411  Sum_probs=145.0

Q ss_pred             CEEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-CC-cchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |||+|+++ .||+.|+.++|+++|++++++++++++.++|+||+|| |. .+.+..+.. ..+.+.|++   .++|+|||
T Consensus         1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~-~~l~~~i~~---~~~PilGI   76 (196)
T PRK13170          1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRE-RELIDLIKA---CTQPVLGI   76 (196)
T ss_pred             CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHH-cChHHHHHH---cCCCEEEE
Confidence            89999998 4588899999999999999999988888999999999 54 345666654 466676765   48999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD  155 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~  155 (215)
                      |+|+|+|++++++.  +..++||++++++.+.+.        ...++|++||+.+...      .++++++++++  .+|
T Consensus        77 ClG~Qll~~~~~~~--~~~~~lg~~~g~v~~~~~--------~~~~~p~~G~~~v~~~------~~~~l~~~l~~~~~v~  140 (196)
T PRK13170         77 CLGMQLLGERSEES--GGVDCLGIIDGPVKKMTD--------FGLPLPHMGWNQVTPQ------AGHPLFQGIEDGSYFY  140 (196)
T ss_pred             CHHHHHHhhhcccC--CCCCCcccccEEEEECCC--------CCCCCCccccceeEeC------CCChhhhCCCcCCEEE
Confidence            99999999998652  237789999999998431        1246899999987642      36789999865  467


Q ss_pred             EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010          156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW  211 (215)
Q Consensus       156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~  211 (215)
                      ++|+|..+  +.  +.++|+|+++     ..++++++++++||+|||||++.+.|.
T Consensus       141 ~~Hs~~lp--~~--~~~la~s~~~-----~~~~~~~~~~~i~G~QFHPE~~~~~G~  187 (196)
T PRK13170        141 FVHSYAMP--VN--EYTIAQCNYG-----EPFSAAIQKDNFFGVQFHPERSGAAGA  187 (196)
T ss_pred             EECeeecC--CC--CcEEEEecCC-----CeEEEEEEcCCEEEEECCCCCcccccH
Confidence            78887643  22  2688999886     467788888999999999999988775

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=100.00  E-value=1.6e-35  Score=238.34  Aligned_cols=182  Identities=47%  Similarity=0.743  Sum_probs=144.0

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      ||+||.++|++.+..++|+++|+++++++++++++++|+||+|||+++.+..+.+..++.+.|++++++++|++|||+|+
T Consensus         1 ~igvl~~qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~   80 (184)
T TIGR03800         1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL   80 (184)
T ss_pred             CEEEEEccCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence            79999999999999999999999999999988899999999999987766667665678899999999999999999999


Q ss_pred             HHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEee
Q 028010           82 IFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP  161 (215)
Q Consensus        82 QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~  161 (215)
                      |+|++.+.+..   ...+|++++++.++++|+++.++...+..+..+              ++|+..      .+.|...
T Consensus        81 qlL~~~~~~~~---~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~--------------~~~~~~------~~~h~~~  137 (184)
T TIGR03800        81 IMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAEVDIKGVG--------------DDPITG------VFIRAPK  137 (184)
T ss_pred             HHHHhhhccCC---CCccCcEEEEEEeeccCCccccEEEEeecccCC--------------CCcceE------EEEcCCC
Confidence            99999985421   134999999999999888887775433222211              112211      2556655


Q ss_pred             CCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       162 ~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      +...|+.. .++|+++.+        +.+++.+++||+|||||++.+.|+|+||
T Consensus       138 v~~lp~~~-~vla~~~~~--------~~a~~~~~~~gvQfHPE~~~~~~~~~~f  182 (184)
T TIGR03800       138 IVSVGNGV-EILAKVGNR--------IVAVRQGNILVSSFHPELTDDHRVHEYF  182 (184)
T ss_pred             cccCCCCe-EEEEEeCCe--------eEEEEeCCEEEEEeCCccCCCchHHHHh
Confidence            55544433 677777654        3455788999999999999999999997

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=100.00  E-value=2e-35  Score=242.34  Aligned_cols=187  Identities=23%  Similarity=0.330  Sum_probs=146.6

Q ss_pred             CEEEEEecCC-ChHHHHHHHHHCCC--eEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHH-HcCCcE
Q 028010            1 MVVGVLALQG-SFNEHIAALKRLGV--KGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G-~~~s~~~~l~~~G~--~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~-~~~~Pi   74 (215)
                      |||+|+++.. |..++.++|+++|+  ++.+++++++++++|+|||||+..  +.+..+++ .++.+.|++.. +.++|+
T Consensus         2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~Pv   80 (209)
T PRK13146          2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRA-VGLGEAVIEAVLAAGRPF   80 (209)
T ss_pred             CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHH-CCcHHHHHHHHHhCCCcE
Confidence            7999999955 78899999999999  888888888999999999999643  33446665 35566555554 589999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEec-cCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~-~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-  152 (215)
                      ||||+|+|+|++...+.  +..+++|+++++|.++ +.+       ...+.|++||+.++..      .++|+|+++++ 
T Consensus        81 lGiC~G~q~l~~~~~e~--~~~~glg~l~g~v~~~~~~~-------~~~~~p~~G~~~v~~~------~~~~lf~~~~~~  145 (209)
T PRK13146         81 LGICVGMQLLFERGLEH--GDTPGLGLIPGEVVRFQPDG-------PALKVPHMGWNTVDQT------RDHPLFAGIPDG  145 (209)
T ss_pred             EEECHHHHHHhhccccc--CCCCCcceEeEEEEEcCCCC-------CCCccCccChHHeeeC------CCChhccCCCCC
Confidence            99999999999984332  3578999999999986 322       1236899999988742      36889999964 


Q ss_pred             -CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010          153 -DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR  210 (215)
Q Consensus       153 -~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~  210 (215)
                       .++++||+.+...++  +.++|+|+++     ..+++++.++++||+|||||++.+.+
T Consensus       146 ~~v~~~Hs~~v~~~~~--~~~la~s~~~-----~~~~a~~~~~~i~GvQFHPE~s~~~G  197 (209)
T PRK13146        146 ARFYFVHSYYAQPANP--ADVVAWTDYG-----GPFTAAVARDNLFATQFHPEKSQDAG  197 (209)
T ss_pred             CEEEEEeEEEEEcCCC--CcEEEEEcCC-----CEEEEEEecCCEEEEEcCCcccHHHH
Confidence             578899998865443  2789999986     35677777889999999999986544

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=100.00  E-value=5.7e-35  Score=236.22  Aligned_cols=180  Identities=46%  Similarity=0.708  Sum_probs=147.2

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+|+.++|++.+..++|+..|++++.++.+++++++|+||+|||..+.++.+.+...+.++|+++.++++|++|||+|
T Consensus         2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G   81 (189)
T PRK13525          2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAG   81 (189)
T ss_pred             CEEEEEEcccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHH
Confidence            79999999999999999999999999999988889999999999998766666656567789999999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEEE
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVLA  158 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~H  158 (215)
                      +|+|++++++.   ..+++|++++++.++++|++.+++                       ..++++.++++  .+++.|
T Consensus        82 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~g~~-----------------------~~~~~~~~~~~~~~~~~~H  135 (189)
T PRK13525         82 MILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSF-----------------------EAELDIKGLGEPFPAVFIR  135 (189)
T ss_pred             HHHHHhhcccC---CCCceeeEEEEEEEccCCCceeeE-----------------------EecccccCCCCCeEEEEEe
Confidence            99999999763   578999999999998765543221                       13345555543  467778


Q ss_pred             EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      ++.+...|+. ++++|+++.+        +++++.+++||+|||||++.+.+|++.|
T Consensus       136 ~d~v~~lp~~-~~vlA~~~~~--------~~~~~~~~~~g~QfHPE~~~~~~~~~~f  183 (189)
T PRK13525        136 APYIEEVGPG-VEVLATVGGR--------IVAVRQGNILATSFHPELTDDTRVHRYF  183 (189)
T ss_pred             CceeeccCCC-cEEEEEcCCE--------EEEEEeCCEEEEEeCCccCCCchHHHHH
Confidence            7777555543 3789998754        3456788999999999999999998876

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=100.00  E-value=1.2e-34  Score=233.12  Aligned_cols=179  Identities=51%  Similarity=0.786  Sum_probs=145.8

Q ss_pred             EEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHH
Q 028010            3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI   82 (215)
Q Consensus         3 v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~Q   82 (215)
                      |+||.++|++.+..++|++.|++++.++..++++++|+||+|||....+..+.+...+.+.|++++++++|+||||+|+|
T Consensus         1 igvl~~qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q   80 (183)
T cd01749           1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI   80 (183)
T ss_pred             CEEEEecCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH
Confidence            68999999999999999999999999999888999999999999876666555556788999999999999999999999


Q ss_pred             HHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec---CCCeEEEEE
Q 028010           83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV---GPDVDVLAD  159 (215)
Q Consensus        83 lLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~---~~~~~~~Hs  159 (215)
                      +|++.+++.  +..+++|++|+++.++++|++.+++.....                       +.++   +...++.|.
T Consensus        81 lL~~~~~~~--~~~~glG~~~~~v~~~~~g~~~g~~~~~l~-----------------------~~~~~~~~~~~~~~h~  135 (183)
T cd01749          81 LLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADLD-----------------------IPGLGLGPFPAVFIRA  135 (183)
T ss_pred             HHHHHhccc--CCCCccCceeEEEEeeccccccceEEEcCC-----------------------CCcCCCCccEEEEEEC
Confidence            999999764  467899999999999988776655432211                       1122   124567777


Q ss_pred             eeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       160 ~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      ..+...++. ++++|+++.+        +++++++|+||+|||||++.+.++|+||
T Consensus       136 ~~v~~~p~~-~~~la~~~~~--------~~a~~~~~~~g~qfHPE~~~~~~~~~~f  182 (183)
T cd01749         136 PVIEEVGPG-VEVLAEYDGK--------IVAVRQGNVLATSFHPELTDDTRIHEYF  182 (183)
T ss_pred             cEEEEcCCC-cEEEEecCCE--------EEEEEECCEEEEEcCCccCCCcchhhhh
Confidence            666444443 3899999875        3477888999999999999999999998

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=100.00  E-value=4.1e-34  Score=232.88  Aligned_cols=184  Identities=24%  Similarity=0.373  Sum_probs=148.3

Q ss_pred             EEEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      .|+|+++.. |+.++.++|+++|++++++++++++.++|+||+||+..  ..+.++.. .++.+.|+++++.++|+||||
T Consensus         1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PvlGiC   79 (199)
T PRK13181          1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVLGIC   79 (199)
T ss_pred             CEEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHH-CChHHHHHHHHHCCCCEEEEC
Confidence            189999854 88899999999999999998888888999999999533  34445544 577899999999999999999


Q ss_pred             hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEE
Q 028010           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV  156 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~  156 (215)
                      +|+|+|+.++++   +..++||++++++.+.+.+.        .+.|++||.++...      .++|+|+++++  .++.
T Consensus        80 ~G~Qll~~~~~~---~~~~glg~l~~~v~~~~~~~--------~~~~~~G~~~v~~~------~~~~lf~~l~~~~~~~~  142 (199)
T PRK13181         80 LGMQLLFESSEE---GNVKGLGLIPGDVKRFRSEP--------LKVPQMGWNSVKPL------KESPLFKGIEEGSYFYF  142 (199)
T ss_pred             HhHHHhhhhccc---CCcCCcceEEEEEEEcCCCC--------CCCCccCccccccC------CCChhHcCCCCCCEEEE
Confidence            999999999864   46789999999999864210        24689999887642      36789999965  4688


Q ss_pred             EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010          157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR  210 (215)
Q Consensus       157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~  210 (215)
                      +|++.+...+..  .++|+|+++     ..++++++.+++||+|||||++.+.+
T Consensus       143 ~Hs~~v~~~~~~--~~lA~s~~~-----~~~~~~~~~~~i~GvQFHPE~~~~~g  189 (199)
T PRK13181        143 VHSYYVPCEDPE--DVLATTEYG-----VPFCSAVAKDNIYAVQFHPEKSGKAG  189 (199)
T ss_pred             eCeeEeccCCcc--cEEEEEcCC-----CEEEEEEECCCEEEEECCCccCCHHH
Confidence            899887655543  689999875     46778888889999999999986544

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=100.00  E-value=6.5e-33  Score=226.21  Aligned_cols=185  Identities=22%  Similarity=0.377  Sum_probs=143.0

Q ss_pred             EEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHH-HcCCcEEEE
Q 028010            2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPVWGT   77 (215)
Q Consensus         2 ~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~-~~~~PilGI   77 (215)
                      .|+|+++. ||..++.++|+++|++++++++++++.++|+||+||+.+  +.+..+.+ .++.+.|++++ +.++|+|||
T Consensus         1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~-~~~~~~l~~~~~~~~~pvlGi   79 (201)
T PRK13152          1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKE-LGFIEALKEQVLVQKKPILGI   79 (201)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHhCCCcEEEE
Confidence            18999984 488899999999999999999988888999999999643  44555554 46677777764 789999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD  155 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~  155 (215)
                      |+|||+|+....+.  +..++||+++++|.+...       ....++|++||++++..      .++++|+++++  +++
T Consensus        80 C~G~Q~l~~~~~~~--~~~~~lg~~~g~v~~~~~-------~~~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~  144 (201)
T PRK13152         80 CLGMQLFLERGYEG--GVCEGLGFIEGEVVKFEE-------DLNLKIPHMGWNELEIL------KQSPLYQGIPEKSDFY  144 (201)
T ss_pred             CHhHHHHhhccccc--CCcCCcccccEEEEECCC-------CCCCcCCccCeEEEEEC------CCChhhhCCCCCCeEE
Confidence            99999999974221  357889999999987421       11235789999987631      36789999865  578


Q ss_pred             EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010          156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR  210 (215)
Q Consensus       156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~  210 (215)
                      ++|||++...+.   .+.|.++++     ..+++++++++++|+|||||++.+.+
T Consensus       145 ~vHS~~v~~~~~---~v~a~~~~g-----~~~~~a~~~~~i~GvQFHPE~~~~~g  191 (201)
T PRK13152        145 FVHSFYVKCKDE---FVSAKAQYG-----HKFVASLQKDNIFATQFHPEKSQNLG  191 (201)
T ss_pred             EEcccEeecCCC---cEEEEECCC-----CEEEEEEecCCEEEEeCCCeecChhh
Confidence            899998865442   467777775     45677888999999999999997654

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=100.00  E-value=1.4e-31  Score=218.26  Aligned_cols=183  Identities=40%  Similarity=0.603  Sum_probs=137.4

Q ss_pred             CEEEEEecCCChHH----HHHHHHHCCCeEEE--ECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGSFNE----HIAALKRLGVKGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~s----~~~~l~~~G~~v~~--~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      |||+||.++|...+    +.++|+++|+++++  ++.++++.++|+||+|||+.+.+..+.++.++.++|+++++.++|+
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi   80 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI   80 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence            89999999998774    45678888986554  4455678899999999998766656655567889999999999999


Q ss_pred             EEEehHHHHHHHhhccC--CCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010           75 WGTCAGLIFLANKAVGQ--KLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~--~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~  152 (215)
                      ||||+|+|+|++++++.  .....+++|++++++.+++.|++...+                       ..++++.+++.
T Consensus        81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~-----------------------~~~~~~~~~~~  137 (200)
T PRK13527         81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSF-----------------------EAEIDLSGLDG  137 (200)
T ss_pred             EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccE-----------------------EEeEeccccCC
Confidence            99999999999998752  122356799999999887543321111                       23345666655


Q ss_pred             Ce--EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          153 DV--DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       153 ~~--~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      .+  ++.|++.+...++. ++++|+++.+       . .+++.+++||+|||||++.+.+++++|
T Consensus       138 ~~~~~~~H~~~v~~lp~~-~~~la~~~~~-------~-~a~~~~~~~g~QfHPE~~~~~~l~~~f  193 (200)
T PRK13527        138 PFHAVFIRAPAITKVGGD-VEVLAKLDDR-------I-VAVEQGNVLATAFHPELTDDTRIHEYF  193 (200)
T ss_pred             cceEEEEccccccccCCC-eEEEEEECCE-------E-EEEEECCEEEEEeCCCCCCCCHHHHHH
Confidence            54  56677766554443 3789988865       3 355778999999999999999988876

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.98  E-value=6e-32  Score=219.89  Aligned_cols=186  Identities=24%  Similarity=0.364  Sum_probs=143.2

Q ss_pred             EEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010            3 VGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus         3 v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      |+|+++.. |..++.++|+++|+++++++..++++++|+||+||+..  ..+..+ +..++.+.|+++.++++|+||||+
T Consensus         1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~-~~~~~~~~i~~~~~~~~pilGiC~   79 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIASGKPFLGICL   79 (198)
T ss_pred             CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHH-HHcChHHHHHHHHHCCCcEEEECH
Confidence            67899854 67789999999999999999888888999999999632  223334 335678999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEE
Q 028010           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL  157 (215)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~  157 (215)
                      |+|+|++++.+.  +..+++|++++++.+.+.+       ...+.|++||..+...      .++++|+++++  .++.+
T Consensus        80 G~q~l~~~~~~g--~~~~~lg~~~g~v~~~~~~-------~~~~~~~~G~~~v~~~------~~~~lf~~l~~~~~v~~~  144 (198)
T cd01748          80 GMQLLFESSEEG--GGTKGLGLIPGKVVRFPAS-------EGLKVPHMGWNQLEIT------KESPLFKGIPDGSYFYFV  144 (198)
T ss_pred             HHHHhccccccC--CCCCCCCCcceEEEECCCC-------CCceEEEeccceEEEC------CCChhhhCCCCCCeEEEE
Confidence            999999996432  3478899999999885421       0123579999876532      36789999965  46778


Q ss_pred             EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010          158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW  211 (215)
Q Consensus       158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~  211 (215)
                      ||+.+..++..  .++|+|+++     ..++++.+++++||+|||||++.+.+.
T Consensus       145 Hs~~v~~~~~~--~~la~s~~~-----~~~~~~~~~~~i~GvQFHPE~~~~~g~  191 (198)
T cd01748         145 HSYYAPPDDPD--YILATTDYG-----GKFPAAVEKDNIFGTQFHPEKSGKAGL  191 (198)
T ss_pred             eEEEEecCCcc--eEEEEecCC-----CeEEEEEEcCCEEEEECCCccccHhHH
Confidence            88888655543  688988875     356666677899999999999976553

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.98  E-value=5.9e-32  Score=247.42  Aligned_cols=188  Identities=24%  Similarity=0.350  Sum_probs=149.6

Q ss_pred             EEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      +|+|+++ -||..++.++|+++|+++.+++.+++++++|+||+||+.+  ..+..+.+ .++.+.|+++++.++|+||||
T Consensus         8 ~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~-~gl~~~i~~~i~~g~PvLGIC   86 (538)
T PLN02617          8 EVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNN-RGMAEALREYIQNDRPFLGIC   86 (538)
T ss_pred             eEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHH-cCHHHHHHHHHHcCCCEEEEC
Confidence            7999998 4589999999999999999999888899999999999643  45666654 578899999999999999999


Q ss_pred             hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEEE
Q 028010           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDVL  157 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~~  157 (215)
                      +|||+|++.+.+.  +..++||++++++.+++.       ....++|++||+.+...      .++|++.+++. .+|++
T Consensus        87 ~G~QlLa~~~~E~--g~~~glg~l~G~v~~~~~-------~~~~~vp~iGw~~V~~~------~~spL~~~l~~~~vy~v  151 (538)
T PLN02617         87 LGLQLLFESSEEN--GPVEGLGVIPGVVGRFDS-------SNGLRVPHIGWNALQIT------KDSELLDGVGGRHVYFV  151 (538)
T ss_pred             HHHHHHhhhhhhc--CCccCcccccceEEECCc-------cCCCCCCeecceEEEec------CCChhHhcCCCcEEEEE
Confidence            9999999987542  457899999999998531       11246899999987642      36789988843 58899


Q ss_pred             EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010          158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR  210 (215)
Q Consensus       158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~  210 (215)
                      |||.+...+.....++++++|+     ..++++++++|+||+|||||++.+.+
T Consensus       152 HSy~v~~~p~~~~~v~a~~~~g-----~~~IaAI~~gnI~GVQFHPE~s~~~G  199 (538)
T PLN02617        152 HSYRATPSDENKDWVLATCNYG-----GEFIASVRKGNVHAVQFHPEKSGATG  199 (538)
T ss_pred             eEEEEEecCCCCcEEEEEEccC-----CCcEEEEEeCCEEEEEcCCccCchhH
Confidence            9998644332221456777765     45889999999999999999997553

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=99.98  E-value=3.3e-32  Score=230.92  Aligned_cols=190  Identities=24%  Similarity=0.322  Sum_probs=154.5

Q ss_pred             EEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-C-CcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G-~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      .|.+|++ .||+.|+.++|+.+|+++..+..|.++.++|.||+|| | +...++.|.. .++.+.|+++++.|+|++|||
T Consensus         3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~-~Gf~eplr~YiesgkPfmgic   81 (541)
T KOG0623|consen    3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNR-TGFAEPLRKYIESGKPFMGIC   81 (541)
T ss_pred             eEEEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhh-hhhHHHHHHHHhcCCCeEeeh
Confidence            3566776 6799999999999999999999999999999999999 6 5667888876 789999999999999999999


Q ss_pred             hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEEE
Q 028010           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDVL  157 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~~  157 (215)
                      .|.|+|...+.+.  +..++||++++.+.++.-        ....+||+|||+....      .+..+|...|. .+||+
T Consensus        82 vGlQaLF~gSvE~--p~skGLgvipg~v~RFD~--------s~k~VPhIGWNsc~v~------sd~effg~~p~~~~YFV  145 (541)
T KOG0623|consen   82 VGLQALFDGSVEN--PPSKGLGVIPGIVGRFDA--------SAKIVPHIGWNSCQVG------SDSEFFGDVPNRHVYFV  145 (541)
T ss_pred             hhHHHHhcccccC--CCcCcccccccceecccC--------CCCcCCcccccccccC------CcccccccCCCceEEEE
Confidence            9999999887653  457899999999998641        2346899999987641      13334444444 69999


Q ss_pred             EEeeCCCCc---cccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010          158 ADYPVPSNK---VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY  212 (215)
Q Consensus       158 Hs~~~~~~~---~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~  212 (215)
                      |||-....+   +...+.+|++.|+    .+.|+++++++|++++|||||+|++.|+.
T Consensus       146 HSyl~~ek~~~len~~wkiat~kYG----~E~Fi~ai~knN~~AtQFHPEKSG~aGL~  199 (541)
T KOG0623|consen  146 HSYLNREKPKSLENKDWKIATCKYG----SESFISAIRKNNVHATQFHPEKSGEAGLS  199 (541)
T ss_pred             eeecccccccCCCCCCceEeeeccC----cHHHHHHHhcCceeeEecccccccchhHH
Confidence            999553221   1122789999998    47899999999999999999999999874

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.98  E-value=1.4e-31  Score=218.18  Aligned_cols=182  Identities=22%  Similarity=0.317  Sum_probs=141.3

Q ss_pred             CEEEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |||.||++.+ |..++.++|+++|+++.+++.+++++++|+||+|||..  ..++++   ..+.+.|++++++++|+|||
T Consensus         1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~---~~~~~~i~~~~~~~~PilgI   77 (200)
T PRK13143          1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENL---SPLRDVILEAARSGKPFLGI   77 (200)
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHH---HHHHHHHHHHHHcCCCEEEE
Confidence            8999999965 66789999999999999998777788999999999632  233333   45678999999999999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV  156 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~  156 (215)
                      |+|+|+|++++.+.  ...+++|++++++.+++.         ..+.+++||..+...      ..+|+++++++ .+++
T Consensus        78 C~G~q~l~~~~~~g--~~~~~lg~~~g~v~~~~~---------~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~  140 (200)
T PRK13143         78 CLGMQLLFESSEEG--GGVRGLGLFPGRVVRFPA---------GVKVPHMGWNTVKVV------KDCPLFEGIDGEYVYF  140 (200)
T ss_pred             CHHHHHHhhhhccC--CCCCCcceeeEEEEEcCC---------CCCCCeecceEEEEc------CCChhhccCCCcEEEE
Confidence            99999999987542  356789999999987531         123567899776531      36788888844 3577


Q ss_pred             EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010          157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT  209 (215)
Q Consensus       157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~  209 (215)
                      +|++.+...+.  ..++|+++++     ..+++++.++++||+|||||++.+.
T Consensus       141 ~Hs~~~~~~~~--~~~la~~~~~-----~~~~~~~~~~~~~gvQfHPE~~~~~  186 (200)
T PRK13143        141 VHSYYAYPDDE--DYVVATTDYG-----IEFPAAVCNDNVFGTQFHPEKSGET  186 (200)
T ss_pred             EeeeeeCCCCc--ceEEEEEcCC-----CEEEEEEEcCCEEEEeCCCccchHH
Confidence            89987765443  2789998864     3467777788999999999998765

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.97  E-value=1.7e-30  Score=211.24  Aligned_cols=180  Identities=27%  Similarity=0.397  Sum_probs=139.1

Q ss_pred             EEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010            3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus         3 v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      |+|+++ .||..++.++|+++|+++++++++++++++|+||+||+.  .+.++++.+. ....+++++++.++|+||||+
T Consensus         1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~-~~~~l~~~~~~~~~pvlGiC~   79 (196)
T TIGR01855         1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLREN-GLDLFVELVVRLGKPVLGICL   79 (196)
T ss_pred             CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHc-CcHHHHHHHHhCCCCEEEECH
Confidence            578887 457889999999999999999988788899999999943  2356666653 334455888889999999999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEE
Q 028010           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL  157 (215)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~  157 (215)
                      |+|+|++++.+.  +..++||+++++|.+.+.          .+.|++||..+...      ..+|+|+++++  .++..
T Consensus        80 G~Qll~~~~~~~--~~~~glg~~~~~v~~~~~----------~~~~~~g~~~~~~~------~~~~l~~~l~~~~~v~~~  141 (196)
T TIGR01855        80 GMQLLFERSEEG--GGVPGLGLIKGNVVKLEA----------RKVPHMGWNEVHPV------KESPLLNGIDEGAYFYFV  141 (196)
T ss_pred             HHHHhhhccccC--CCCCCcceeeEEEEECCC----------CCCCcccCeeeeeC------CCChHHhCCCCCCEEEEE
Confidence            999999997442  468899999999988531          14679999876531      36789999976  46677


Q ss_pred             EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010          158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT  209 (215)
Q Consensus       158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~  209 (215)
                      |++.++..+ .  .++++++.+     ..++++++++++||+|||||++.+.
T Consensus       142 Hs~~v~~~~-~--~~~a~~~~g-----~~~~~~~~~~~i~GvQFHPE~~~~~  185 (196)
T TIGR01855       142 HSYYAVCEE-E--AVLAYADYG-----EKFPAAVQKGNIFGTQFHPEKSGKT  185 (196)
T ss_pred             CeeEecCCC-C--cEEEEEcCC-----cEEEEEEecCCEEEEECCCccCcHh
Confidence            887776544 2  567777764     3677888888999999999998653

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.97  E-value=2.6e-30  Score=211.41  Aligned_cols=186  Identities=24%  Similarity=0.340  Sum_probs=143.1

Q ss_pred             EEEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      +|.||++.+ |..++.++|+++|+++.+++.+++++++|+||+|||..  +.+..+. ..++.++|+++.+.++|+||||
T Consensus         1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~-~~~~~~~i~~~~~~~~pvlGIC   79 (205)
T PRK13141          1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLR-ERGLDEVIKEAVASGKPLLGIC   79 (205)
T ss_pred             CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHH-HcChHHHHHHHHHCCCcEEEEC
Confidence            488999966 55678999999999999998888889999999999643  2333332 3577889999999999999999


Q ss_pred             hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEE
Q 028010           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV  156 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~  156 (215)
                      +|+|+|++.+.+  .+.+++||++++++.+++.+       .....|++||..+..+      .+++++++++.  .++.
T Consensus        80 ~G~Qll~~~~~~--~~~~~~lg~l~g~v~~~~~~-------~~~~~~~~g~~~i~~~------~~~~l~~~l~~~~~v~~  144 (205)
T PRK13141         80 LGMQLLFESSEE--FGETEGLGLLPGRVRRFPPE-------EGLKVPHMGWNQLELK------KESPLLKGIPDGAYVYF  144 (205)
T ss_pred             HHHHHhhhcccc--CCCCCccceEEEEEEEcCCC-------CCCcccEecCccceeC------CCChhhhCCCCCCEEEE
Confidence            999999998743  24678999999999986421       1124678999877642      26789999965  4678


Q ss_pred             EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010          157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR  210 (215)
Q Consensus       157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~  210 (215)
                      +|++.+..++..  .++|+++++     ..++++...+++||+|||||++.+.+
T Consensus       145 ~Hs~~v~~~~~~--~v~a~~~~~-----~~~~a~~~~~~i~GvQfHPE~~~~~g  191 (205)
T PRK13141        145 VHSYYADPCDEE--YVAATTDYG-----VEFPAAVGKDNVFGAQFHPEKSGDVG  191 (205)
T ss_pred             ECeeEeccCCcC--eEEEEEeCC-----cEEEEEEecCCEEEEeCCCccchHHH
Confidence            899888654432  688888764     34666666779999999999986543

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=99.96  E-value=4.3e-29  Score=192.95  Aligned_cols=192  Identities=36%  Similarity=0.593  Sum_probs=145.3

Q ss_pred             EEEEEecCCChHHHHHHHHHCC------C--eEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC-C
Q 028010            2 VVGVLALQGSFNEHIAALKRLG------V--KGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-K   72 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G------~--~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~-~   72 (215)
                      .|+||+++|++.+..+.++++-      +  ++..+..++|+.++|+||||||.++.|..+....+|.+.|..++.++ +
T Consensus        13 VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k   92 (226)
T KOG3210|consen   13 VIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSK   92 (226)
T ss_pred             EEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCc
Confidence            5899999999999998888652      2  33456778899999999999999998888877778999999999987 9


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~  152 (215)
                      |++|.|+||.+|++.+.++.. ..+.|++++.+|+||.+|+|.+||........+-.   ....|++.|++.|....+-.
T Consensus        93 ~~WGTCAGmI~LS~ql~nek~-~~~tL~~lkv~V~RN~FG~QaqSFT~~~~~snfi~---~~~~FpATFIRAPVie~ILD  168 (226)
T KOG3210|consen   93 VTWGTCAGMIYLSQQLSNEKK-LVKTLNLLKVKVKRNAFGRQAQSFTRICDFSNFIP---HCNDFPATFIRAPVIEEILD  168 (226)
T ss_pred             cceeechhhhhhhhhhcCCcc-hhhhhhheeEEEeeccccchhhhheehhccccccc---CcccCchhheechhHHHhcC
Confidence            999999999999999876432 56789999999999999999999976543333221   11235677788888777622


Q ss_pred             CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEE-eeCCEEEEeeCCccC-CCCcccccC
Q 028010          153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAV-RQGNLLGTAFHPELT-ADTRWYIIF  215 (215)
Q Consensus       153 ~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~-~~~~v~g~QFHPE~s-~~~~~~~~~  215 (215)
                      +.-+..-|..+                  .|++..+.++ +++|++++.||||++ .+.|||.||
T Consensus       169 ~I~V~~l~~~~------------------~nG~~~iVAa~Q~~~iL~TSFHPELa~~D~R~HdW~  215 (226)
T KOG3210|consen  169 PIHVQVLYKLD------------------GNGQELIVAAKQKNNILATSFHPELAENDIRFHDWF  215 (226)
T ss_pred             chhheEEEEec------------------CCCcEEEEEEeccCCEeeeecChhhhcccchHHHHH
Confidence            21111111111                  0112344444 458999999999999 899999998

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.96  E-value=2.8e-28  Score=197.28  Aligned_cols=165  Identities=18%  Similarity=0.270  Sum_probs=115.8

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECC----CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK----PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~----~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |||.|+++.+++. .+.++|+++|+++++++.    +++++++|+||++||+... .+..   .+.++|++ +++++|+|
T Consensus         2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~-~~~~---~~~~~i~~-~~~~~PiL   76 (190)
T PRK06895          2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP-RAYP---QLFAMLER-YHQHKSIL   76 (190)
T ss_pred             cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh-HHhh---HHHHHHHH-hcCCCCEE
Confidence            8999999999877 477899999999988773    3456789999999987632 1221   23567766 67899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--  153 (215)
                      |||+|+|+|+.++|              ++|.+.+            +.++.+|+.+..   .   .++++|+++++.  
T Consensus        77 GIClG~Qlla~~~G--------------g~V~~~~------------~~~~g~~~~v~~---~---~~~~l~~~~~~~~~  124 (190)
T PRK06895         77 GVCLGHQTLCEFFG--------------GELYNLN------------NVRHGQQRPLKV---R---SNSPLFDGLPEEFN  124 (190)
T ss_pred             EEcHHHHHHHHHhC--------------CeEeecC------------CCccCceEEEEE---C---CCChhhhcCCCceE
Confidence            99999999999997              3554432            244666654432   1   367899999765  


Q ss_pred             eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeCC--EEEEeeCCcc-CCCCc
Q 028010          154 VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQGN--LLGTAFHPEL-TADTR  210 (215)
Q Consensus       154 ~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~--v~g~QFHPE~-s~~~~  210 (215)
                      ++++|++.+..  .+... .++|+++       ..++++++.++  +||+|||||+ +.+.|
T Consensus       125 v~~~Hs~~v~~~~lp~~l-~~~a~~~-------~~~i~a~~~~~~pi~GvQFHPE~~~~~~g  178 (190)
T PRK06895        125 IGLYHSWAVSEENFPTPL-EITAVCD-------ENVVMAMQHKTLPIYGVQFHPESYISEFG  178 (190)
T ss_pred             EEcchhheecccccCCCe-EEEEECC-------CCcEEEEEECCCCEEEEEeCCCcCCCcch
Confidence            56778887752  22221 3344433       34788887764  9999999998 44443

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.96  E-value=3.2e-28  Score=203.42  Aligned_cols=169  Identities=18%  Similarity=0.067  Sum_probs=120.1

Q ss_pred             CEEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |||.||...+  ....+.+.|++.|.++++++.      +++++++|++||+||..+..+...+...+.++|+++++.++
T Consensus         8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~   87 (239)
T PRK06490          8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENK   87 (239)
T ss_pred             ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCC
Confidence            6899997655  455688999999999887753      23577899999999975443333333345789999999999


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~  152 (215)
                      |+||||+|+|+|+.++|              ++|.+++.           ..+++||..+..+      ...+++.+++.
T Consensus        88 PvLGIC~G~Qlla~alG--------------G~V~~~~~-----------G~~e~G~~~i~~~------~~~~~~~~~~~  136 (239)
T PRK06490         88 PFLGICLGAQMLARHLG--------------ARVAPHPD-----------GRVEIGYYPLRPT------EAGRALMHWPE  136 (239)
T ss_pred             CEEEECHhHHHHHHHcC--------------CEeecCCC-----------CCCccceEEeEEC------CCcccccCCCC
Confidence            99999999999999997              46666431           1247788766532      13344555555


Q ss_pred             CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       153 ~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      .++.+|++.. ..|+. +.++|+|+.|      .++++..++++||+|||||++.+
T Consensus       137 ~~~~~H~d~~-~lP~~-~~~LA~s~~~------~~qa~~~~~~v~g~QfHPE~~~~  184 (239)
T PRK06490        137 MVYHWHREGF-DLPAG-AELLATGDDF------PNQAFRYGDNAWGLQFHPEVTRA  184 (239)
T ss_pred             EEEEECCccc-cCCCC-CEEEEeCCCC------CeEEEEeCCCEEEEeeCccCCHH
Confidence            6777788763 33433 4899999987      34444445589999999999853

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.95  E-value=5.2e-28  Score=201.72  Aligned_cols=172  Identities=14%  Similarity=0.115  Sum_probs=121.5

Q ss_pred             CEEEEEecCCC--hHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcchH---HHHHhh--CCHHHHHHHH
Q 028010            1 MVVGVLALQGS--FNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTM---ARLAEY--HNLFPALREF   67 (215)
Q Consensus         1 m~v~il~~~G~--~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~~---~~l~~~--~~l~~~i~~~   67 (215)
                      |||.|+.....  ...+...+++.|+++++++.      +.+++++|+||++||+.+..   +..++.  ....++|+++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~   80 (235)
T PRK08250          1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQA   80 (235)
T ss_pred             CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHH
Confidence            89999886552  33567788999998877542      12456899999999965421   112221  1346789999


Q ss_pred             HHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCcee
Q 028010           68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV  147 (215)
Q Consensus        68 ~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~  147 (215)
                      ++.++|+||||+|+|+|++++|              ++|.+++             .+++||.+++.+. .+  .++|++
T Consensus        81 ~~~~~PvlGIC~G~Qlla~alG--------------g~V~~~~-------------~~e~G~~~v~lt~-~g--~~d~l~  130 (235)
T PRK08250         81 IKAGKAVIGVCLGAQLIGEALG--------------AKYEHSP-------------EKEIGYFPITLTE-AG--LKDPLL  130 (235)
T ss_pred             HHcCCCEEEEChhHHHHHHHhC--------------ceeccCC-------------CCceeEEEEEEcc-cc--ccCchh
Confidence            9999999999999999999997              4555542             2467876655322 11  367899


Q ss_pred             eecCCCeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          148 LDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       148 ~~~~~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      .++++.+.+.|||.+....+..++++|+|+.|      .++++..++++||+|||||++.+
T Consensus       131 ~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~------~~qa~~~~~~~~g~QfHPE~~~~  185 (235)
T PRK08250        131 SHFGSTLTVGHWHNDMPGLTDQAKVLATSEGC------PRQIVQYSNLVYGFQCHMEFTVE  185 (235)
T ss_pred             hcCCCCcEEEEEecceecCCCCCEEEECCCCC------CceEEEeCCCEEEEeecCcCCHH
Confidence            99888887777776543333345899999988      45555556689999999999865

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.95  E-value=4.2e-28  Score=202.11  Aligned_cols=167  Identities=16%  Similarity=0.122  Sum_probs=115.3

Q ss_pred             EEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch-----HHHHHhhCCHHHHHHHHH
Q 028010            2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREFV   68 (215)
Q Consensus         2 ~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~-----~~~l~~~~~l~~~i~~~~   68 (215)
                      ||.|+...-  +..++.++|++.|.++++++.      +.++.++|+||++||+.+.     +.++   ..+.++|++++
T Consensus         4 ~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~---~~~~~~i~~~~   80 (234)
T PRK07053          4 TAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFL---APEIALLRQRL   80 (234)
T ss_pred             eEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcH---HHHHHHHHHHH
Confidence            788887633  456789999999999888754      2345679999999986433     2344   34578999999


Q ss_pred             HcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceee
Q 028010           69 KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL  148 (215)
Q Consensus        69 ~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~  148 (215)
                      +.++|+||||+|+|+|++++|+              +|.++             +.+++||..+..+. .+  ..+|+ .
T Consensus        81 ~~~~PvlGIC~G~Qlla~alGg--------------~V~~~-------------~~~e~G~~~i~~t~-~g--~~~pl-~  129 (234)
T PRK07053         81 AAGLPTLGICLGAQLIARALGA--------------RVYPG-------------GQKEIGWAPLTLTD-AG--RASPL-R  129 (234)
T ss_pred             HCCCCEEEECccHHHHHHHcCC--------------cEecC-------------CCCeEeEEEEEEec-cc--cCChh-h
Confidence            9999999999999999999973              34332             13466776554321 11  24555 3


Q ss_pred             ecCCCeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          149 DVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       149 ~~~~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      ++++.+.++|||.+....+..++++|+|+.|      ..+++..++++||+|||||++.+
T Consensus       130 ~~~~~~~~~~~H~d~~~lP~ga~~La~s~~~------~~qaf~~g~~~~g~QfHpE~~~~  183 (234)
T PRK07053        130 HLGAGTPVLHWHGDTFDLPEGATLLASTPAC------RHQAFAWGNHVLALQFHPEARED  183 (234)
T ss_pred             cCCCcceEEEEeCCEEecCCCCEEEEcCCCC------CeeEEEeCCCEEEEeeCccCCHH
Confidence            5655555555554322222234899999987      34454455689999999999875

>PRK05665 amidotransferase; Provisional

Probab=99.95  E-value=4.8e-27  Score=196.32  Aligned_cols=169  Identities=14%  Similarity=0.111  Sum_probs=117.1

Q ss_pred             CEEEEEecC----------CChHH-HHHHHHHCCC--eEEEEC-----CCCCCCCcCEEEEcCCCcchHHHHHhhCCHHH
Q 028010            1 MVVGVLALQ----------GSFNE-HIAALKRLGV--KGVEIR-----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFP   62 (215)
Q Consensus         1 m~v~il~~~----------G~~~s-~~~~l~~~G~--~v~~~~-----~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~   62 (215)
                      |||+||..+          |+|.. +.+.|...+.  ++++++     .+.+++++|++|++||..+.++...|...+.+
T Consensus         3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~   82 (240)
T PRK05665          3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKT   82 (240)
T ss_pred             eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHH
Confidence            689999753          45555 3445666664  444443     13456789999999997665554555456789


Q ss_pred             HHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeee
Q 028010           63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFI  142 (215)
Q Consensus        63 ~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~  142 (215)
                      +|++++++++|+||||+|+|+|++++|              ++|.+++.|            .++|+..+..+      .
T Consensus        83 ~i~~~~~~~~PilGIC~GhQlla~AlG--------------G~V~~~~~G------------~e~G~~~~~~~------~  130 (240)
T PRK05665         83 YLLKLYERGDKLLGVCFGHQLLALLLG--------------GKAERASQG------------WGVGIHRYQLA------A  130 (240)
T ss_pred             HHHHHHhcCCCEEEEeHHHHHHHHHhC--------------CEEEeCCCC------------cccceEEEEec------C
Confidence            999999999999999999999999997              466665422            13344332211      2


Q ss_pred             eCceeeecCCCeEEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          143 RAPAVLDVGPDVDVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       143 ~~pl~~~~~~~~~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      ..+++.+++..+..++||.+  ...|+. +.++|+|+.|      .++++..++++||+|||||++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~H~D~V~~LP~g-a~~La~s~~~------~~q~~~~~~~~~g~QfHPE~~~~  191 (240)
T PRK05665        131 HAPWMSPAVTELTLLISHQDQVTALPEG-ATVIASSDFC------PFAAYHIGDQVLCFQGHPEFVHD  191 (240)
T ss_pred             CCccccCCCCceEEEEEcCCeeeeCCCC-cEEEEeCCCC------cEEEEEeCCCEEEEecCCcCcHH
Confidence            45677777666666666554  444543 4899999988      44554456689999999999876

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.95  E-value=3.6e-27  Score=188.92  Aligned_cols=160  Identities=19%  Similarity=0.258  Sum_probs=113.5

Q ss_pred             EEEEecCCC-hHHHHHHHHHCCCeEEEECCCC-----CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            3 VGVLALQGS-FNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         3 v~il~~~G~-~~s~~~~l~~~G~~v~~~~~~~-----~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      |+|+++... ..++.++|+++|++++++....     ++.++|+||++||..+.++..     ..+..+...+.++|+||
T Consensus         1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-----~~~~~~~~~~~~~PilG   75 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-----APRVDPEIFELGVPVLG   75 (181)
T ss_pred             CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-----cchhhHHHHhcCCCEEE
Confidence            568887544 4468899999999998887542     467899999999975433211     01223444456999999


Q ss_pred             EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--e
Q 028010           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V  154 (215)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~  154 (215)
                      ||+|||+|+.++|              +++.++             +.|++||+.+...      ..+++|.+++..  +
T Consensus        76 IC~G~Qll~~~~g--------------g~v~~~-------------~~~~~G~~~v~~~------~~~~l~~~~~~~~~~  122 (181)
T cd01742          76 ICYGMQLIAKALG--------------GKVERG-------------DKREYGKAEIEID------DSSPLFEGLPDEQTV  122 (181)
T ss_pred             EcHHHHHHHHhcC--------------CeEEeC-------------CCCcceEEEEEec------CCChhhcCCCCceEE
Confidence            9999999999986              345543             2357888766421      367889888654  5


Q ss_pred             EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee-C-CEEEEeeCCccCCC
Q 028010          155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-G-NLLGTAFHPELTAD  208 (215)
Q Consensus       155 ~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~-~-~v~g~QFHPE~s~~  208 (215)
                      ++.|++.+...++.. .++|+++.+       .+++++. + ++||+|||||++.+
T Consensus       123 ~~~H~~~v~~l~~~~-~~la~~~~~-------~i~a~~~~~~~~~g~QfHPE~~~~  170 (181)
T cd01742         123 WMSHGDEVVKLPEGF-KVIASSDNC-------PVAAIANEEKKIYGVQFHPEVTHT  170 (181)
T ss_pred             EcchhhhhhhcCCCc-EEEEeCCCC-------CEEEEEeCCCcEEEEEcCCccccC
Confidence            778888775555433 789998865       4555554 3 89999999999975

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.94  E-value=2.3e-27  Score=192.60  Aligned_cols=168  Identities=19%  Similarity=0.175  Sum_probs=118.5

Q ss_pred             EEEEEecCCChHH-HHHHHHHCC-CeEEEECC---CCCC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFNE-HIAALKRLG-VKGVEIRK---PDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~s-~~~~l~~~G-~~v~~~~~---~~~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      +|.|+++.+.|.. +.+++++.| +..+++..   .+.+  .+.|++|++||+.+.++.-.|.....++|++....++|+
T Consensus         3 ~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pv   82 (198)
T COG0518           3 KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPV   82 (198)
T ss_pred             EEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCE
Confidence            8999999998886 567899999 54444332   2223  356999999998655433223345678888887778889


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV  154 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~  154 (215)
                      ||||+|||+||.++|              ++|.+++             ..++||.+++.+.     .++++|++++..+
T Consensus        83 LGIC~G~Ql~A~~lG--------------g~V~~~~-------------~~E~G~~~v~~~~-----~~~~l~~gl~~~~  130 (198)
T COG0518          83 LGICLGHQLLAKALG--------------GKVERGP-------------KREIGWTPVELTE-----GDDPLFAGLPDLF  130 (198)
T ss_pred             EEEChhHHHHHHHhC--------------CEEeccC-------------CCccceEEEEEec-----CccccccCCcccc
Confidence            999999999999997              4666642             1477887665321     1347899986654


Q ss_pred             -EEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEee-CCEEEEeeCCccCCCC
Q 028010          155 -DVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADT  209 (215)
Q Consensus       155 -~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~-~~v~g~QFHPE~s~~~  209 (215)
                       .+.|||.+  ...|+. ++++|+|+.|      + +++++. .++||+|||||++.+.
T Consensus       131 ~~v~~sH~D~v~~lP~g-~~vlA~s~~c------p-~qa~~~~~~~~gvQFHpEv~~~~  181 (198)
T COG0518         131 TTVFMSHGDTVVELPEG-AVVLASSETC------P-NQAFRYGKRAYGVQFHPEVTHEY  181 (198)
T ss_pred             CccccchhCccccCCCC-CEEEecCCCC------h-hhheecCCcEEEEeeeeEEeHHH
Confidence             35555544  544553 4899999988      3 455554 5999999999998743

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.94  E-value=4.3e-27  Score=189.87  Aligned_cols=160  Identities=20%  Similarity=0.227  Sum_probs=114.9

Q ss_pred             EEEEecCC-ChHHHHHHHHHCCCeEEEECCC---CCCCCc--CEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            3 VGVLALQG-SFNEHIAALKRLGVKGVEIRKP---DQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         3 v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~---~~l~~~--d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      |+|+++.- +..++.++|+++|+++++++..   +++..+  |+||++||..+.+..     ...++++.+++.++|+||
T Consensus         1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-----~~~~~i~~~~~~~~PilG   75 (188)
T TIGR00888         1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-----NAPRADEKIFELGVPVLG   75 (188)
T ss_pred             CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-----CchHHHHHHHhCCCCEEE
Confidence            56888754 4557889999999999887543   344444  499999997654321     224678888889999999


Q ss_pred             EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--e
Q 028010           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V  154 (215)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~  154 (215)
                      ||+|||+|+.++|              +++.++             +.+++||..+..+      ..+++|.++++.  +
T Consensus        76 IC~G~Qll~~~lg--------------g~v~~~-------------~~~~~g~~~v~~~------~~~~l~~~~~~~~~~  122 (188)
T TIGR00888        76 ICYGMQLMAKQLG--------------GEVGRA-------------EKREYGKAELEIL------DEDDLFRGLPDESTV  122 (188)
T ss_pred             ECHHHHHHHHhcC--------------ceEecC-------------CCccceeEEEEEe------cCCHhhcCCCCCcEE
Confidence            9999999999986              355543             2357788765431      256888888654  5


Q ss_pred             EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe-eC-CEEEEeeCCccCCC
Q 028010          155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QG-NLLGTAFHPELTAD  208 (215)
Q Consensus       155 ~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~-~v~g~QFHPE~s~~  208 (215)
                      +..|++.+...+.. ..++|+++.+       .+++++ ++ ++||+|||||++..
T Consensus       123 ~~~H~~~v~~l~~~-~~vla~~~~~-------~v~a~~~~~~~~~g~QfHPE~~~~  170 (188)
T TIGR00888       123 WMSHGDKVKELPEG-FKVLATSDNC-------PVAAMAHEEKPIYGVQFHPEVTHT  170 (188)
T ss_pred             EeEccceeecCCCC-CEEEEECCCC-------CeEEEEECCCCEEEEeeCCccCCC
Confidence            66888887544443 2688888765       455555 44 89999999999874

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.94  E-value=2.2e-27  Score=198.16  Aligned_cols=171  Identities=20%  Similarity=0.175  Sum_probs=116.4

Q ss_pred             CEEEEEecC----------CChHHHH-HHHHHCCCeEEEECCC-----CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010            1 MVVGVLALQ----------GSFNEHI-AALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (215)
Q Consensus         1 m~v~il~~~----------G~~~s~~-~~l~~~G~~v~~~~~~-----~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i   64 (215)
                      .||+||..+          |+|.... +.|...|.++++++..     .++.++|+|||+||+.+.++...|...+.++|
T Consensus         2 ~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i   81 (237)
T PRK09065          2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSERTADWL   81 (237)
T ss_pred             CcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHHHHHHHH
Confidence            069999743          3444433 3455678887776532     24568999999999765544444444568899


Q ss_pred             HHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeC
Q 028010           65 REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRA  144 (215)
Q Consensus        65 ~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~  144 (215)
                      +++++.++|+||||+|+|+|+.++|+              +|.+++.            ..++||..++.+. .+  ..+
T Consensus        82 ~~~~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~~~------------g~e~G~~~v~~~~-~~--~~~  132 (237)
T PRK09065         82 RQAAAAGMPLLGICYGHQLLAHALGG--------------EVGYNPA------------GRESGTVTVELHP-AA--ADD  132 (237)
T ss_pred             HHHHHCCCCEEEEChhHHHHHHHcCC--------------ccccCCC------------CCccceEEEEEcc-cc--ccC
Confidence            99999999999999999999999973              4444432            1345665444211 11  256


Q ss_pred             ceeeecCCC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe-eCCEEEEeeCCccCCC
Q 028010          145 PAVLDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTAD  208 (215)
Q Consensus       145 pl~~~~~~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~QFHPE~s~~  208 (215)
                      |+|.++++.  ++.+|++.+...|+. +.++|+|++|      . +++++ ++++||+|||||++.+
T Consensus       133 ~l~~~~~~~~~v~~~H~d~v~~lp~~-~~~la~s~~~------~-iqa~~~~~~i~gvQfHPE~~~~  191 (237)
T PRK09065        133 PLFAGLPAQFPAHLTHLQSVLRLPPG-AVVLARSAQD------P-HQAFRYGPHAWGVQFHPEFTAH  191 (237)
T ss_pred             hhhhcCCccCcEeeehhhhhhhCCCC-CEEEEcCCCC------C-eeEEEeCCCEEEEEeCCcCCHH
Confidence            788888664  466777776554543 3899999987      3 45555 4589999999999764

>PRK00758 GMP synthase subunit A; Validated

Probab=99.94  E-value=1.2e-26  Score=186.62  Aligned_cols=157  Identities=21%  Similarity=0.235  Sum_probs=111.6

Q ss_pred             EEEEecCCChH-HHHHHHHHCCCeEEEECC---CCCCCCc-CEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            3 VGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNV-SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         3 v~il~~~G~~~-s~~~~l~~~G~~v~~~~~---~~~l~~~-d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |+|+++.+.+. ++.++|+++|+++++++.   +++++++ |+||++||+.  +++.   ..+.++++   +.++|+|||
T Consensus         2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~--~~~~---~~~~~~l~---~~~~PilGI   73 (184)
T PRK00758          2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD--IERA---GNCPEYLK---ELDVPILGI   73 (184)
T ss_pred             EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC--hhhc---cccHHHHH---hCCCCEEEE
Confidence            88999877666 577899999999988773   3456677 9999999973  2222   23344554   468999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--eE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VD  155 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~~  155 (215)
                      |+|||+|+.++|              ++|.+++             .+++||..+..+      ..+++|.++++.  ++
T Consensus        74 C~G~Q~L~~a~G--------------g~v~~~~-------------~~~~g~~~i~~~------~~~~l~~~~~~~~~~~  120 (184)
T PRK00758         74 CLGHQLIAKAFG--------------GEVGRGE-------------YGEYALVEVEIL------DEDDILKGLPPEIRVW  120 (184)
T ss_pred             eHHHHHHHHhcC--------------cEEecCC-------------CceeeeEEEEEc------CCChhhhCCCCCcEEE
Confidence            999999999986              3555432             346677554321      246788888654  56


Q ss_pred             EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010          156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD  208 (215)
Q Consensus       156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~  208 (215)
                      +.|++.+...++. ..++|++++|       .+++++.  .++||+|||||++..
T Consensus       121 ~~H~~~v~~l~~~-~~~la~~~~~-------~v~a~~~~~~~~~g~QfHPE~~~~  167 (184)
T PRK00758        121 ASHADEVKELPDG-FEILARSDIC-------EVEAMKHKEKPIYGVQFHPEVAHT  167 (184)
T ss_pred             eehhhhhhhCCCC-CEEEEECCCC-------CEEEEEECCCCEEEEEcCCccCCC
Confidence            7788776555543 3789999987       3555553  359999999999764

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.93  E-value=3.6e-25  Score=178.03  Aligned_cols=159  Identities=20%  Similarity=0.248  Sum_probs=111.9

Q ss_pred             EEEEecCCChHH-HHHHHHHCCCeEEEECCCC------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |.|+++.+.|.. +.+.|+++|+++++++..+      ++.++|+||++||..+..+.     ...+.+++++++++|+|
T Consensus         1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~-----~~~~~i~~~~~~~~Pvl   75 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA-----GISLEIIRALAGKVPIL   75 (184)
T ss_pred             CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccc-----hhHHHHHHHHhcCCCEE
Confidence            578899898885 6789999999998886532      35789999998886543221     12445666677899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccC-CCCCCcceeeeeeeCceeeecCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw-~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      |||+|+|+|+.++|              +++.+.+             .++.|| ..+.       ...+++|+++++  
T Consensus        76 GIC~G~Qlla~~~G--------------g~v~~~~-------------~~~~g~~~~v~-------~~~~~~~~~~~~~~  121 (184)
T cd01743          76 GVCLGHQAIAEAFG--------------GKVVRAP-------------EPMHGKTSEIH-------HDGSGLFKGLPQPF  121 (184)
T ss_pred             EECHhHHHHHHHhC--------------CEEEeCC-------------CCCcCceeEEE-------ECCCccccCCCCCc
Confidence            99999999999987              4555532             223343 2221       135678888865  


Q ss_pred             CeEEEEEeeCCCCccc-cCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010          153 DVDVLADYPVPSNKVL-YSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA  207 (215)
Q Consensus       153 ~~~~~Hs~~~~~~~~~-~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~  207 (215)
                      .++..|+|.+...+.. .+.++|+++.|       .+++++.+  ++||+|||||+..
T Consensus       122 ~~~~~H~~~v~~~~~~~~~~~la~~~~~-------~v~a~~~~~~~i~gvQfHPE~~~  172 (184)
T cd01743         122 TVGRYHSLVVDPDPLPDLLEVTASTEDG-------VIMALRHRDLPIYGVQFHPESIL  172 (184)
T ss_pred             EEEeCcEEEEecCCCCceEEEEEeCCCC-------eEEEEEeCCCCEEEEeeCCCcCC
Confidence            4677888877554432 12688888875       67777755  4999999999943

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.93  E-value=2.1e-25  Score=183.55  Aligned_cols=161  Identities=20%  Similarity=0.214  Sum_probs=113.2

Q ss_pred             CEEEEEecCCChHH-HHHHHHHCCCeEEEECCCC----C----CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (215)
Q Consensus         1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~----l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~   71 (215)
                      |||.|+++.+.+.. +.+.|+++|+++.+++...    +    ++++|+||++||+.+..+ .   ....++++++.+++
T Consensus         1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~-~---~~~~~~i~~~~~~~   76 (214)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPER-A---GASIDMVRACAAAG   76 (214)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhh-c---chHHHHHHHHHhCC
Confidence            89999999887664 5688999999988876432    1    347999999999765322 2   22357889988899


Q ss_pred             CcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC
Q 028010           72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG  151 (215)
Q Consensus        72 ~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~  151 (215)
                      +|+||||+|+|+|+.++|              ++|.+.+             .++.|+....      ....+++|.+++
T Consensus        77 ~PiLGIC~G~Qlla~a~G--------------G~v~~~~-------------~~~~g~~~~v------~~~~~~~~~~~~  123 (214)
T PRK07765         77 TPLLGVCLGHQAIGVAFG--------------ATVDRAP-------------ELLHGKTSSV------HHTGVGVLAGLP  123 (214)
T ss_pred             CCEEEEccCHHHHHHHhC--------------CEEeeCC-------------CCccCceeEE------EECCCccccCCC
Confidence            999999999999999997              3555432             2233442110      012445777775


Q ss_pred             CC--eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010          152 PD--VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT  206 (215)
Q Consensus       152 ~~--~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s  206 (215)
                      ..  ++.+|++.+.  ..++. ..++|++++|       .+++++.+  ++||+|||||++
T Consensus       124 ~~~~v~~~H~~~v~~~~lp~~-~~vla~s~~~-------~vqa~~~~~~~i~gvQfHPE~~  176 (214)
T PRK07765        124 DPFTATRYHSLTILPETLPAE-LEVTARTDSG-------VIMAVRHRELPIHGVQFHPESV  176 (214)
T ss_pred             CccEEEecchheEecccCCCc-eEEEEEcCCC-------cEEEEEeCCCCEEEEeeCCCcc
Confidence            53  5667888774  23333 2789999876       46777654  699999999985

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.93  E-value=4.6e-25  Score=178.52  Aligned_cols=167  Identities=18%  Similarity=0.164  Sum_probs=115.8

Q ss_pred             EEEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      .|.+++..++|.. +++.|+++|+++.+++..+    ++.  ++|+||+.||+.+..+.    ....+.++. .+.++|+
T Consensus         1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~----~~~~~~i~~-~~~~~Pi   75 (191)
T PRK06774          1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA----GISLAVIRH-FADKLPI   75 (191)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC----CCchHHHHH-hcCCCCE
Confidence            1889999998885 7889999999999887542    232  57999999998765432    112455554 4679999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      ||||+|+|+|+.++|              ++|.+.+             .+++||..+...      ..+++|++++.  
T Consensus        76 LGIC~G~Qlla~~~G--------------G~v~~~~-------------~~~~G~~~~~~~------~~~~lf~~l~~~~  122 (191)
T PRK06774         76 LGVCLGHQALGQAFG--------------ARVVRAR-------------QVMHGKTSAICH------SGQGVFRGLNQPL  122 (191)
T ss_pred             EEECHHHHHHHHHhC--------------CEEEeCC-------------cceecceEEEEe------cCchhhcCCCCCc
Confidence            999999999999987              4555532             134587654321      35678888854  


Q ss_pred             CeEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCcc-CCCCc
Q 028010          153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPEL-TADTR  210 (215)
Q Consensus       153 ~~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~-s~~~~  210 (215)
                      .++++|++.+.  ..++. ..++|+|++++   ....++++++.  ++||+|||||+ +...|
T Consensus       123 ~v~~~Hs~~v~~~~lp~~-~~vlA~s~~d~---~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G  181 (191)
T PRK06774        123 TVTRYHSLVIAADSLPGC-FELTAWSERGG---EMDEIMGIRHRTLPLEGVQFHPESILSEQG  181 (191)
T ss_pred             EEEEeCcceeeccCCCCC-eEEEEEeCCCC---CcceEEEEEeCCCCEEEEEECCCcCCCccH
Confidence            57888998773  33332 27899988651   01234555554  89999999999 55444

>PLN02347 GMP synthetase

Probab=99.93  E-value=2.5e-25  Score=204.11  Aligned_cols=164  Identities=18%  Similarity=0.221  Sum_probs=117.4

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCC--CcCEEEEcCCCcchHHHHHhhCCHH-HHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLF-PALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~--~~d~lil~GG~~~~~~~l~~~~~l~-~~i~~~~~~~~Pi   74 (215)
                      ||+||+|...|. ++.++|+++|+.++++...   +++.  ++|+||++||+.+.++.-.  ..+. ..++...+.++|+
T Consensus        12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~--p~~~~~i~~~~~~~~iPI   89 (536)
T PLN02347         12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGA--PTVPEGFFDYCRERGVPV   89 (536)
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCC--chhhHHHHHHHHhcCCcE
Confidence            799999988776 6788999999998887432   3333  5899999999765432100  1112 2333334579999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      ||||+|||+|+.++|              ++|.+.+             .+++||+.+...      .++++|++++.  
T Consensus        90 LGIClG~QlLa~alG--------------G~V~~~~-------------~~e~G~~~v~i~------~~~~Lf~~l~~~~  136 (536)
T PLN02347         90 LGICYGMQLIVQKLG--------------GEVKPGE-------------KQEYGRMEIRVV------CGSQLFGDLPSGE  136 (536)
T ss_pred             EEECHHHHHHHHHcC--------------CEEEecC-------------CcccceEEEEEc------CCChhhhcCCCCc
Confidence            999999999999987              4555531             346788765421      36789999854  


Q ss_pred             --CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          153 --DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       153 --~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                        .+|+.|++.+...|... .++|+|++|       .+++++  ..++||+|||||++..
T Consensus       137 ~~~v~~~Hsd~V~~lP~g~-~vlA~s~~~-------~iaai~~~~~~i~GvQFHPE~~~t  188 (536)
T PLN02347        137 TQTVWMSHGDEAVKLPEGF-EVVAKSVQG-------AVVAIENRERRIYGLQYHPEVTHS  188 (536)
T ss_pred             eEEEEEEEEEEeeeCCCCC-EEEEEeCCC-------cEEEEEECCCCEEEEEccCCCCcc
Confidence              47888998875555543 789999987       357765  5689999999999873

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.92  E-value=9e-26  Score=182.19  Aligned_cols=166  Identities=20%  Similarity=0.290  Sum_probs=116.1

Q ss_pred             EEEecCCChH-HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            4 GVLALQGSFN-EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         4 ~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      .|+++...+. ++.++|+++|+++++++...       ++.++|++||+||..+..+ +   ..+.+.++++.+.++|+|
T Consensus         1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~---~~~~~~i~~~~~~~~Pil   76 (192)
T PF00117_consen    1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-I---EGLIELIREARERKIPIL   76 (192)
T ss_dssp             EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-H---HHHHHHHHHHHHTTSEEE
T ss_pred             CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-c---cccccccccccccceEEE
Confidence            3677755444 78899999999998887432       2678999999999776543 2   234678888888999999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--  153 (215)
                      |||+|||+|+.++|+              +|.+.+            +.++.||+.....  .   ..+++|.+.++.  
T Consensus        77 GIC~G~Q~la~~~G~--------------~v~~~~------------~~~~~g~~~~~~~--~---~~~~~~~~~~~~~~  125 (192)
T PF00117_consen   77 GICLGHQILAHALGG--------------KVVPSP------------EKPHHGGNIPISE--T---PEDPLFYGLPESFK  125 (192)
T ss_dssp             EETHHHHHHHHHTTH--------------EEEEEE------------SEEEEEEEEEEEE--E---EEHGGGTTSTSEEE
T ss_pred             EEeehhhhhHHhcCC--------------cccccc------------ccccccccccccc--c---cccccccccccccc
Confidence            999999999999973              444321            1456677532210  0   124788888665  


Q ss_pred             eEEEEEeeCCC---CccccCCcceeeecccCCCCCceEEEEeeCC-EEEEeeCCccCCCCc
Q 028010          154 VDVLADYPVPS---NKVLYSSSTVEIQEENAMPEKKVIVAVRQGN-LLGTAFHPELTADTR  210 (215)
Q Consensus       154 ~~~~Hs~~~~~---~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~-v~g~QFHPE~s~~~~  210 (215)
                      ++..|++.+..   .|... .++|+|+++     ...++++..++ +||+|||||++.+..
T Consensus       126 ~~~~H~~~v~~~~~~p~~~-~~la~s~~~-----~~~~~~~~~~~~i~g~QfHPE~~~~~~  180 (192)
T PF00117_consen  126 AYQYHSDAVNPDDLLPEGF-EVLASSSDG-----CPIQAIRHKDNPIYGVQFHPEFSSSPG  180 (192)
T ss_dssp             EEEEECEEEEEGHHHHTTE-EEEEEETTT-----TEEEEEEECTTSEEEESSBTTSTTSTT
T ss_pred             cccccceeeeccccccccc-ccccccccc-----cccccccccccEEEEEecCCcCCCCCC
Confidence            45667777665   44432 789999652     13555555554 999999999998764

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.92  E-value=3.5e-25  Score=185.41  Aligned_cols=170  Identities=21%  Similarity=0.186  Sum_probs=109.5

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCe---EEEECC--C----CCCCCcCEEEEcCCCcch-------HHHHHhhC-C
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVK---GVEIRK--P----DQLQNVSSLIIPGGESTT-------MARLAEYH-N   59 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~---v~~~~~--~----~~l~~~d~lil~GG~~~~-------~~~l~~~~-~   59 (215)
                      +.|+||...-.    -.++.+.|++.|..   +++++.  .    .+++++|+|||+||..+.       .+|+.... .
T Consensus         2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~   81 (242)
T PRK07567          2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE   81 (242)
T ss_pred             CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence            14888886432    13466778888864   444431  1    256789999999996432       33433211 1


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceee
Q 028010           60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRG  139 (215)
Q Consensus        60 l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~  139 (215)
                      +.++++.+++.++|+||||+|+|+|+.++|              ++|.+ +.            -+++||..+..+. .+
T Consensus        82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~G--------------G~V~~-~~------------g~e~G~~~v~l~~-~g  133 (242)
T PRK07567         82 LSGLLDEVVARDFPFLGACYGVGTLGHHQG--------------GVVDR-TY------------GEPVGAVTVSLTD-AG  133 (242)
T ss_pred             HHHHHHHHHhcCCCEEEEchhHHHHHHHcC--------------CEEec-CC------------CCcCccEEEEECC-cc
Confidence            234555556899999999999999999997              35554 21            1356766554321 11


Q ss_pred             eeeeCceeeecCCCeEEE--EEeeCCCCccccCCcceeeecccCCCCCceEEEEe-eCCEEEEeeCCccCCC
Q 028010          140 VFIRAPAVLDVGPDVDVL--ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTAD  208 (215)
Q Consensus       140 ~~~~~pl~~~~~~~~~~~--Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~QFHPE~s~~  208 (215)
                        ..+|+|.+++..+...  |++.+...|+. +.++|+|+.|       .+++++ ++++||+|||||++.+
T Consensus       134 --~~~~l~~~~~~~~~~~~~H~d~V~~lp~~-~~vlA~s~~~-------~vqa~~~~~~~~gvQfHPE~~~~  195 (242)
T PRK07567        134 --RADPLLAGLPDTFTAFVGHKEAVSALPPG-AVLLATSPTC-------PVQMFRVGENVYATQFHPELDAD  195 (242)
T ss_pred             --CCChhhcCCCCceEEEeehhhhhhhCCCC-CEEEEeCCCC-------CEEEEEeCCCEEEEEeCCcCCHH
Confidence              2578998887766554  55555444443 3799999876       345555 5689999999999875

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.92  E-value=6.5e-25  Score=176.89  Aligned_cols=167  Identities=19%  Similarity=0.100  Sum_probs=116.5

Q ss_pred             EEEEEecCCC--hHHHHHHHHHCC---CeEEEECCC-----CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHc
Q 028010            2 VVGVLALQGS--FNEHIAALKRLG---VKGVEIRKP-----DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKM   70 (215)
Q Consensus         2 ~v~il~~~G~--~~s~~~~l~~~G---~~v~~~~~~-----~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~   70 (215)
                      ||+||.....  .....+.|+++|   +++++++..     .+++++|+||++||..+. .+...+...+.+.|+.+.++
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~   80 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA   80 (188)
T ss_pred             CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence            5788877554  356788999998   677776532     356789999999996544 22222324567889999999


Q ss_pred             CCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010           71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (215)
Q Consensus        71 ~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~  150 (215)
                      ++|++|||+|+|+|+.++|              +++.+++.            .++.||..+..+.   ....++++.++
T Consensus        81 ~~pilgiC~G~q~l~~~lG--------------G~v~~~~~------------~~~~g~~~v~~~~---~~~~~~l~~~~  131 (188)
T cd01741          81 GKPVLGICLGHQLLARALG--------------GKVGRNPK------------GWEIGWFPVTLTE---AGKADPLFAGL  131 (188)
T ss_pred             CCCEEEECccHHHHHHHhC--------------CEEecCCC------------cceeEEEEEEecc---ccccCchhhcC
Confidence            9999999999999999986              45555432            1355665554321   11245677777


Q ss_pred             CC--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCc
Q 028010          151 GP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPE  204 (215)
Q Consensus       151 ~~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE  204 (215)
                      +.  .++..|++.+...++. +.++|++++|      .++++...+++||+|||||
T Consensus       132 ~~~~~v~~~H~~~v~~lp~~-~~~la~~~~~------~v~~~~~~~~~~g~QfHPE  180 (188)
T cd01741         132 PDEFPVFHWHGDTVVELPPG-AVLLASSEAC------PNQAFRYGDRALGLQFHPE  180 (188)
T ss_pred             CCcceEEEEeccChhhCCCC-CEEeecCCCC------CcceEEecCCEEEEccCch
Confidence            55  4677888877655543 3789999886      3444444579999999999

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>CHL00101 trpG anthranilate synthase component 2

Probab=99.92  E-value=2.9e-24  Score=173.78  Aligned_cols=159  Identities=15%  Similarity=0.134  Sum_probs=111.3

Q ss_pred             EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |.|+++.+.|.. +.+.|+++|+++.+++..+    ++  .++|+||+.||+.+..+     ..+...+.++++.++|+|
T Consensus         2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~-----~~~~~~i~~~~~~~~PiL   76 (190)
T CHL00101          2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRD-----SGISLDVISSYAPYIPIL   76 (190)
T ss_pred             EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHH-----CcchHHHHHHhcCCCcEE
Confidence            899999999885 6789999999998877432    22  46899999999865432     122344555677899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--  153 (215)
                      |||+|||+|+.++|              ++|.+.+             .++.||.....   .   ..+++|.++++.  
T Consensus        77 GIClG~Qlla~~~G--------------g~V~~~~-------------~~~~g~~~~~~---~---~~~~l~~~~~~~~~  123 (190)
T CHL00101         77 GVCLGHQSIGYLFG--------------GKIIKAP-------------KPMHGKTSKIY---H---NHDDLFQGLPNPFT  123 (190)
T ss_pred             EEchhHHHHHHHhC--------------CEEEECC-------------CcccCceeeEe---e---CCcHhhccCCCceE
Confidence            99999999999997              4666542             22345432211   1   356788888664  


Q ss_pred             eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CC-EEEEeeCCccCC
Q 028010          154 VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GN-LLGTAFHPELTA  207 (215)
Q Consensus       154 ~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~-v~g~QFHPE~s~  207 (215)
                      ++..|++.+.  ..+.. ..++|++++|       .+++++.  .+ +||+|||||++.
T Consensus       124 v~~~H~~~v~~~~lp~~-~~vla~s~~~-------~v~a~~~~~~~~i~gvQfHPE~~~  174 (190)
T CHL00101        124 ATRYHSLIIDPLNLPSP-LEITAWTEDG-------LIMACRHKKYKMLRGIQFHPESLL  174 (190)
T ss_pred             EEcchhheeecccCCCc-eEEEEEcCCC-------cEEEEEeCCCCCEEEEEeCCccCC
Confidence            4667877763  22332 3789999876       3455543  35 999999999973

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.92  E-value=4.4e-24  Score=173.43  Aligned_cols=158  Identities=19%  Similarity=0.135  Sum_probs=109.7

Q ss_pred             EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----C--CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~--l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |.|++..++|.. +.+.|+++|.++.+++..+    +  ..++|+||+.||+.+..+.    ....+.++. .+.++|+|
T Consensus         2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~----~~~~~~i~~-~~~~~PvL   76 (195)
T PRK07649          2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA----GISMEVIRY-FAGKIPIF   76 (195)
T ss_pred             EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC----CCchHHHHH-hcCCCCEE
Confidence            889999998885 7899999999999887542    1  2368999999998765431    123455554 35789999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe-
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV-  154 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~-  154 (215)
                      |||+|+|+|+.++|              ++|.+.+             .++.|+....    .  ....|+|.++++.+ 
T Consensus        77 GIClG~Qlla~~lG--------------g~V~~~~-------------~~~~G~~~~i----~--~~~~~lf~~~~~~~~  123 (195)
T PRK07649         77 GVCLGHQSIAQVFG--------------GEVVRAE-------------RLMHGKTSLM----H--HDGKTIFSDIPNPFT  123 (195)
T ss_pred             EEcHHHHHHHHHcC--------------CEEeeCC-------------CcccCCeEEE----E--ECCChhhcCCCCCCE
Confidence            99999999999997              4555532             1233543211    1  02568999997654 


Q ss_pred             -EEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010          155 -DVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT  206 (215)
Q Consensus       155 -~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s  206 (215)
                       +..|++.+.  ..|+. .+++|+|++|       .+++++.+  ++||+|||||..
T Consensus       124 v~~~H~~~v~~~~lp~~-~~~~a~s~~~-------~v~a~~~~~~~i~gvQFHPE~~  172 (195)
T PRK07649        124 ATRYHSLIVKKETLPDC-LEVTSWTEEG-------EIMAIRHKTLPIEGVQFHPESI  172 (195)
T ss_pred             EEEechheEecccCCCC-eEEEEEcCCC-------cEEEEEECCCCEEEEEECCCCC
Confidence             556666652  23332 3789998876       45666654  599999999975

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.91  E-value=2e-23  Score=166.08  Aligned_cols=159  Identities=21%  Similarity=0.268  Sum_probs=113.0

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCC-HHHHHHHHHHcCC
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~-l~~~i~~~~~~~~   72 (215)
                      |+|.+++..+++. .+++.|+++|.++.++++.+    .+  .++|+|||+-|+....+     .+ ..+.|+++ ...+
T Consensus         2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d-----~G~~~~~i~~~-~~~~   75 (191)
T COG0512           2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKD-----AGISLELIRRF-AGRI   75 (191)
T ss_pred             ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHH-----cchHHHHHHHh-cCCC
Confidence            5899999999887 47899999999998887641    12  35899999666543321     22 35777777 5679


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~  152 (215)
                      |+||||+|+|.|++++|              ++|.+.             +.|..|-.+....      ....+|+++++
T Consensus        76 PiLGVCLGHQai~~~fG--------------g~V~~a-------------~~~~HGK~s~i~h------~g~~iF~glp~  122 (191)
T COG0512          76 PILGVCLGHQAIAEAFG--------------GKVVRA-------------KEPMHGKTSIITH------DGSGLFAGLPN  122 (191)
T ss_pred             CEEEECccHHHHHHHhC--------------CEEEec-------------CCCcCCeeeeeec------CCcccccCCCC
Confidence            99999999999999998              355542             1334453221110      24689999987


Q ss_pred             Ce--EEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCcc
Q 028010          153 DV--DVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPEL  205 (215)
Q Consensus       153 ~~--~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~  205 (215)
                      .|  ..+||..+..  .|... .+.|+++.+      ..++++++.  +++|+|||||.
T Consensus       123 ~f~v~RYHSLvv~~~~lP~~l-~vtA~~~d~------~~IMai~h~~~pi~gvQFHPES  174 (191)
T COG0512         123 PFTVTRYHSLVVDPETLPEEL-EVTAESEDG------GVIMAVRHKKLPIYGVQFHPES  174 (191)
T ss_pred             CCEEEeeEEEEecCCCCCCce-EEEEEeCCC------CEEEEEeeCCCCEEEEecCCcc
Confidence            65  5589987754  45443 678888753      478998755  79999999996

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.91  E-value=1.6e-23  Score=169.29  Aligned_cols=159  Identities=18%  Similarity=0.179  Sum_probs=109.2

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      .|.|+++.+.|. ++.+.|+++|+++++++...    ++  .++|+||++||+.+..+ .   ....+++++ +..++|+
T Consensus         1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d-~---~~~~~~l~~-~~~~~Pv   75 (189)
T PRK05670          1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAE-A---GISLELIRE-FAGKVPI   75 (189)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHH-c---chHHHHHHH-hcCCCCE
Confidence            189999999887 57899999999998886532    12  24899999998765432 1   122456654 4678999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC-
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-  153 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-  153 (215)
                      ||||+|||+|+.++|              +++.+.+             .++.||.....      ...++++.+++.. 
T Consensus        76 LGIClG~Qlla~alG--------------g~v~~~~-------------~~~~g~~~~v~------~~~~~l~~~~~~~~  122 (189)
T PRK05670         76 LGVCLGHQAIGEAFG--------------GKVVRAK-------------EIMHGKTSPIE------HDGSGIFAGLPNPF  122 (189)
T ss_pred             EEECHHHHHHHHHhC--------------CEEEecC-------------CcccCceeEEE------eCCCchhccCCCCc
Confidence            999999999999997              3454432             12345532111      0256788887654 


Q ss_pred             -eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccC
Q 028010          154 -VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELT  206 (215)
Q Consensus       154 -~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s  206 (215)
                       ++..|++.+..  .+.. .+++|++++|       .+++++.  .++||+|||||++
T Consensus       123 ~v~~~H~~~v~~~~lp~~-~~~la~s~~~-------~i~a~~~~~~~~~gvQfHPE~~  172 (189)
T PRK05670        123 TVTRYHSLVVDRESLPDC-LEVTAWTDDG-------EIMGVRHKELPIYGVQFHPESI  172 (189)
T ss_pred             EEEcchhheeccccCCCc-eEEEEEeCCC-------cEEEEEECCCCEEEEeeCCCcC
Confidence             56677777642  3433 3789998765       5666664  4799999999996

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.91  E-value=5.3e-24  Score=200.74  Aligned_cols=159  Identities=14%  Similarity=0.163  Sum_probs=117.3

Q ss_pred             CEEEEEecCCC-hHHHHHHHHHCCCeEEEECCC--CCC---CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKP--DQL---QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~-~~s~~~~l~~~G~~v~~~~~~--~~l---~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      +||+|+++... ..++.++|+++|+++.+++..  +++   .++|+||+.||+.+..+     .+..+.|+++++.++|+
T Consensus       517 ~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d-----~~~~~~I~~~~~~~iPv  591 (717)
T TIGR01815       517 RRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPAD-----FDVAGTIDAALARGLPV  591 (717)
T ss_pred             CEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchh-----cccHHHHHHHHHCCCCE
Confidence            48999998764 457889999999999888653  222   46899999888765432     23467888888899999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCC-CCCCcceeeeeeeCceeeecCC-
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-EGGPETFRGVFIRAPAVLDVGP-  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~-~~~~~~~~~~~~~~pl~~~~~~-  152 (215)
                      ||||+|||+|+.++|              ++|.+.             +.|++||. .+...      ..+++|.+++. 
T Consensus       592 LGICLG~QlLa~a~G--------------G~V~~~-------------~~p~~G~~~~V~~~------~~~~Lf~~lp~~  638 (717)
T TIGR01815       592 FGVCLGLQGMVEAFG--------------GALDVL-------------PEPVHGKASRIRVL------GPDALFAGLPER  638 (717)
T ss_pred             EEECHHHHHHhhhhC--------------CEEEEC-------------CCCeeCcceEEEEC------CCChhhhcCCCC
Confidence            999999999999986              455553             35788853 33321      25689999865 


Q ss_pred             -CeEEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCcc
Q 028010          153 -DVDVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPEL  205 (215)
Q Consensus       153 -~~~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~  205 (215)
                       .++++|||.+  ...|.. ..++|+++++       .+++++.  .++||+|||||+
T Consensus       639 ~~v~~~HS~~~~~~~LP~~-~~vlA~s~d~-------~v~Ai~~~~~~i~GVQFHPEs  688 (717)
T TIGR01815       639 LTVGRYHSLFARRDRLPAE-LTVTAESADG-------LIMAIEHRRLPLAAVQFHPES  688 (717)
T ss_pred             CEEEEECCCCcccccCCCC-eEEEEEeCCC-------cEEEEEECCCCEEEEEeCCee
Confidence             4677888765  223333 3788988875       5777774  579999999999

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.91  E-value=2e-23  Score=168.53  Aligned_cols=161  Identities=18%  Similarity=0.160  Sum_probs=111.0

Q ss_pred             EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |.+++..++|.. +.+.|+++|+++.+++..+    ++  .++|+||++||+.+..+.    ....+.++. .+.++|+|
T Consensus         2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~----~~~~~~~~~-~~~~~PiL   76 (187)
T PRK08007          2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEA----GISLDVIRH-YAGRLPIL   76 (187)
T ss_pred             EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHC----CccHHHHHH-hcCCCCEE
Confidence            889999998884 7889999999999887542    22  258999999998765322    122455655 56789999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCC-CCCcceeeeeeeCceeeecCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-GGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~-~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      |||+|+|+|+.++|              +++.+.+             .++.|+.. +..       ...++|++++.  
T Consensus        77 GIClG~Q~la~a~G--------------g~v~~~~-------------~~~~g~~~~v~~-------~~~~l~~~~~~~~  122 (187)
T PRK08007         77 GVCLGHQAMAQAFG--------------GKVVRAA-------------KVMHGKTSPITH-------NGEGVFRGLANPL  122 (187)
T ss_pred             EECHHHHHHHHHcC--------------CEEEeCC-------------CcccCCceEEEE-------CCCCcccCCCCCc
Confidence            99999999999997              4565532             22334321 111       24568888755  


Q ss_pred             CeEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCcc-CCCCc
Q 028010          153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPEL-TADTR  210 (215)
Q Consensus       153 ~~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~-s~~~~  210 (215)
                      .++.+|++.+.  ..|+.. .++|++++|       .+++++  ..+++|+|||||+ ..+.|
T Consensus       123 ~v~~~H~~~v~~~~lp~~~-~v~a~~~~~-------~i~a~~~~~~~i~GvQfHPE~~~t~~G  177 (187)
T PRK08007        123 TVTRYHSLVVEPDSLPACF-EVTAWSETR-------EIMGIRHRQWDLEGVQFHPESILSEQG  177 (187)
T ss_pred             EEEEcchhEEccCCCCCCe-EEEEEeCCC-------cEEEEEeCCCCEEEEEeCCcccCCcch
Confidence            46677888763  333332 688988876       456665  4479999999998 43433

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.90  E-value=4.3e-24  Score=195.75  Aligned_cols=161  Identities=19%  Similarity=0.274  Sum_probs=115.2

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCCCc--CEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~~~--d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      +|+||+|...|. .+.++|+++|+..+++...   ++++++  |+||++||+.+.++.-.  ..+   .+...+.++|+|
T Consensus         5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~--p~~---~~~i~~~~~PvL   79 (511)
T PRK00074          5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGA--PRA---DPEIFELGVPVL   79 (511)
T ss_pred             EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCC--ccc---cHHHHhCCCCEE
Confidence            799999988777 4678999999988777432   344444  99999999775543111  112   234456799999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--  153 (215)
                      |||+|||+|+.++|              ++|.+.+             .++.||..+...      .++++|.+++..  
T Consensus        80 GIC~G~QlLa~~lG--------------G~V~~~~-------------~~e~G~~~i~i~------~~~~Lf~~l~~~~~  126 (511)
T PRK00074         80 GICYGMQLMAHQLG--------------GKVERAG-------------KREYGRAELEVD------NDSPLFKGLPEEQD  126 (511)
T ss_pred             EECHHHHHHHHHhC--------------CeEEecC-------------CcccceEEEEEc------CCChhhhcCCCceE
Confidence            99999999999987              3454431             246687665421      256789888654  


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                      ++..|++.+...|+.. .++|+|+.+       .+++++  ++++||+|||||++..
T Consensus       127 v~~~H~d~V~~lp~g~-~vlA~s~~~-------~v~ai~~~~~~i~GvQFHPE~~~t  175 (511)
T PRK00074        127 VWMSHGDKVTELPEGF-KVIASTENC-------PIAAIANEERKFYGVQFHPEVTHT  175 (511)
T ss_pred             EEEECCeEEEecCCCc-EEEEEeCCC-------CEEEEEeCCCCEEEEeCCCCcCCc
Confidence            6778888776555543 789999875       456665  5689999999999874

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.90  E-value=5.6e-23  Score=166.04  Aligned_cols=160  Identities=21%  Similarity=0.201  Sum_probs=108.6

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCC----CCCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP----DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~----~~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      .|.|++..++|. ++.+.|+++|+++.++...    +++.  ++|+|||+||+.+..+. .   ...+.++++ +.++|+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~-~---~~~~~i~~~-~~~~Pv   75 (188)
T TIGR00566         1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEA-G---ISLEAIRHF-AGKLPI   75 (188)
T ss_pred             CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---hhHHHHHHh-ccCCCE
Confidence            188999999988 5789999999998887642    2232  47899999998654321 1   115667766 679999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      ||||+|||+|+.++|              ++|.+.+            +.++.+|..+..       ..++++.+++.  
T Consensus        76 LGIC~G~Qll~~~~G--------------G~v~~~~------------~~~~g~~~~v~~-------~~~~~~~~l~~~~  122 (188)
T TIGR00566        76 LGVCLGHQAMGQAFG--------------GDVVRAN------------TVMHGKTSEIEH-------NGAGIFRGLFNPL  122 (188)
T ss_pred             EEECHHHHHHHHHcC--------------CEEeeCC------------CccccceEEEEE-------CCCccccCCCCCc
Confidence            999999999999997              4555432            122333443321       24456777744  


Q ss_pred             CeEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010          153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT  206 (215)
Q Consensus       153 ~~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s  206 (215)
                      .++..|++.+.  ..+... .++|+++.+      ..+++++..  ++||+|||||..
T Consensus       123 ~v~~~H~~~v~~~~l~~~~-~v~a~s~~~------~~v~a~~~~~~~i~gvQfHPE~~  173 (188)
T TIGR00566       123 TATRYHSLVVEPETLPTCF-PVTAWEEEN------IEIMAIRHRDLPLEGVQFHPESI  173 (188)
T ss_pred             EEEEcccceEecccCCCce-EEEEEcCCC------CEEEEEEeCCCCEEEEEeCCCcc
Confidence            45778888763  333332 678888764      256666543  799999999984

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.90  E-value=7.9e-23  Score=167.53  Aligned_cols=168  Identities=18%  Similarity=0.237  Sum_probs=103.9

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      .||+++++.+.+. ++.+.|+++|+++++++...   ++  .++|+||+.||+.+..+.- .   ..+.++.+. .++|+
T Consensus         2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~-~---~~~li~~~~-~~~Pi   76 (208)
T PRK05637          2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAG-N---MMALIDRTL-GQIPL   76 (208)
T ss_pred             CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhh-H---HHHHHHHHh-CCCCE
Confidence            1899999877666 68899999999999887532   23  2579999999887654321 1   134555443 58999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC---
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG---  151 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~---  151 (215)
                      ||||+|+|+|+.++|+..    ...+...+....             .....-|             .++|+|.+++   
T Consensus        77 LGIClG~Qlla~alGG~V----~~~~~~~G~~~~-------------i~~~~~~-------------~~~~l~~~~~~~~  126 (208)
T PRK05637         77 LGICLGFQALLEHHGGKV----EPCGPVHGTTDN-------------MILTDAG-------------VQSPVFAGLATDV  126 (208)
T ss_pred             EEEcHHHHHHHHHcCCee----ccCCcccceEEE-------------eEECCCC-------------CCCcccCCCCccc
Confidence            999999999999997421    101100000000             0000001             1233444332   


Q ss_pred             ---------C--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          152 ---------P--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       152 ---------~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                               .  .++.+|++.+...|+.. .++|+|+.+    .-..+++++  ..++||+|||||....
T Consensus       127 ~~~~~~~~g~~~~V~~~H~~~v~~lp~~~-~vlA~s~~~----~~~v~~a~~~~~~~~~GvQfHPE~~~T  191 (208)
T PRK05637        127 EPDHPEIPGRKVPIARYHSLGCVVAPDGM-ESLGTCSSE----IGPVIMAAETTDGKAIGLQFHPESVLS  191 (208)
T ss_pred             ccccccccCCceEEEEechhhhhcCCCCe-EEEEEecCC----CCCEEEEEEECCCCEEEEEeCCccCcC
Confidence                     2  35667887776555543 789987642    013556644  5689999999998764

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.89  E-value=2.2e-22  Score=163.16  Aligned_cols=165  Identities=17%  Similarity=0.132  Sum_probs=109.8

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCC-CCC-----CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP-DQL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~-~~l-----~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      .|.+++..++|. .+.+.|+++|+++.+++.. .++     .++|+||+.||+.+..+.    ....++++. ++.++|+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~----~~~~~~i~~-~~~~~Pi   75 (193)
T PRK08857          1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEA----GISLQAIEH-FAGKLPI   75 (193)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHC----cchHHHHHH-hcCCCCE
Confidence            188999999888 4789999999999888753 121     247899999997654322    122456654 5789999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC-
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-  153 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-  153 (215)
                      ||||+|+|+|+.++|              ++|.+.+             .++.||....    .  ...+++|.+++.. 
T Consensus        76 LGIClG~Qlia~a~G--------------g~v~~~~-------------~~~~G~~~~~----~--~~~~~l~~~~~~~~  122 (193)
T PRK08857         76 LGVCLGHQAIAQVFG--------------GQVVRAR-------------QVMHGKTSPI----R--HTGRSVFKGLNNPL  122 (193)
T ss_pred             EEEcHHHHHHHHHhC--------------CEEEeCC-------------CceeCceEEE----E--ECCCcccccCCCcc
Confidence            999999999999997              3555432             2344663211    0  1245688888654 


Q ss_pred             -eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010          154 -VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA  207 (215)
Q Consensus       154 -~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~  207 (215)
                       ++..|++.+.  ..+.. ..++|++++.+  .....+++++..  ++||+|||||+..
T Consensus       123 ~v~~~H~~~v~~~~lp~~-~~v~a~s~~~~--~~~~~i~~~~~~~~pi~gvQfHPE~~~  178 (193)
T PRK08857        123 TVTRYHSLVVKNDTLPEC-FELTAWTELED--GSMDEIMGFQHKTLPIEAVQFHPESIK  178 (193)
T ss_pred             EEEEccEEEEEcCCCCCC-eEEEEEecCcC--CCcceEEEEEeCCCCEEEEeeCCCcCC
Confidence             5667777653  23332 26888886420  012356666544  8999999999973

>PRK13566 anthranilate synthase; Provisional

Probab=99.89  E-value=2.8e-22  Score=189.33  Aligned_cols=160  Identities=14%  Similarity=0.148  Sum_probs=116.5

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC-----CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-----~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      |||+|+++...+. .+.+.|+++|+++++++...     +..++|+||+.||+.+..+     .++.++|+.++++++|+
T Consensus       527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d-----~~~~~lI~~a~~~~iPI  601 (720)
T PRK13566        527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD-----FDCKATIDAALARNLPI  601 (720)
T ss_pred             CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh-----CCcHHHHHHHHHCCCcE
Confidence            6899999987544 67899999999999987642     2246899999888755321     24568899999999999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccC-CCCCCcceeeeeeeCceeeecCCC
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPD  153 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw-~~~~~~~~~~~~~~~pl~~~~~~~  153 (215)
                      ||||+|||+|+.++|              +++.+.             +.|+.|+ +.+..+      ..+++|.+++..
T Consensus       602 LGIClG~QlLa~alG--------------G~V~~~-------------~~~~~G~~~~V~v~------~~~~Lf~~lp~~  648 (720)
T PRK13566        602 FGVCLGLQAIVEAFG--------------GELGQL-------------AYPMHGKPSRIRVR------GPGRLFSGLPEE  648 (720)
T ss_pred             EEEehhHHHHHHHcC--------------CEEEEC-------------CCCccCCceEEEEC------CCCchhhcCCCC
Confidence            999999999999997              345443             2344454 333321      245788888664


Q ss_pred             --eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010          154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT  206 (215)
Q Consensus       154 --~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s  206 (215)
                        ++.+|++++..  .++.. .++|++++|       .+++++++  ++||+|||||+.
T Consensus       649 ~~v~~~Hs~~v~~~~Lp~~~-~vlA~s~dg-------~V~ai~~~~~pi~GVQFHPE~i  699 (720)
T PRK13566        649 FTVGRYHSLFADPETLPDEL-LVTAETEDG-------VIMAIEHKTLPVAAVQFHPESI  699 (720)
T ss_pred             CEEEEecceeEeeccCCCce-EEEEEeCCC-------cEEEEEECCCCEEEEeccCeeC
Confidence              57788876532  33332 789999875       67887754  899999999994

>PLN02335 anthranilate synthase

Probab=99.88  E-value=7.7e-22  Score=163.27  Aligned_cols=166  Identities=19%  Similarity=0.188  Sum_probs=108.1

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC-C---C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCc
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-~---l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~P   73 (215)
                      +||.|+++.+.|. .+.+.|+++|+++.+++... +   +  .++|+||+.||+.+..+. .   ...+.+++ ...++|
T Consensus        19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~-~---~~~~~~~~-~~~~~P   93 (222)
T PLN02335         19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS-G---ISLQTVLE-LGPLVP   93 (222)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---chHHHHHH-hCCCCC
Confidence            3799999988777 57799999999999987531 2   2  257999999998765321 1   11344433 456799


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~  153 (215)
                      +||||+|+|+|+.++|              +++.+.+.+           ..+.+|..+.... .   .++++|.+++..
T Consensus        94 iLGIClG~QlLa~alG--------------g~v~~~~~~-----------~~~G~~~~v~~~~-~---~~~~Lf~~l~~~  144 (222)
T PLN02335         94 LFGVCMGLQCIGEAFG--------------GKIVRSPFG-----------VMHGKSSPVHYDE-K---GEEGLFSGLPNP  144 (222)
T ss_pred             EEEecHHHHHHHHHhC--------------CEEEeCCCc-----------cccCceeeeEECC-C---CCChhhhCCCCC
Confidence            9999999999999987              344443211           1122343332211 0   245899998664


Q ss_pred             --eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC---CEEEEeeCCccCC
Q 028010          154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPELTA  207 (215)
Q Consensus       154 --~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~---~v~g~QFHPE~s~  207 (215)
                        ++..|++.+..  .+...-.++|+++.+       .+++++..   ++||+|||||+..
T Consensus       145 ~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~-------~v~ai~~~~~~~i~GvQfHPE~~~  198 (222)
T PLN02335        145 FTAGRYHSLVIEKDTFPSDELEVTAWTEDG-------LIMAARHRKYKHIQGVQFHPESII  198 (222)
T ss_pred             CEEEechhheEecccCCCCceEEEEEcCCC-------CEEEEEecCCCCEEEEEeCCCCCC
Confidence              56667776642  232211577887765       46776644   4999999999974

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.87  E-value=4e-21  Score=153.89  Aligned_cols=154  Identities=16%  Similarity=0.181  Sum_probs=100.3

Q ss_pred             EEEEecCCChHHHHHHHHHCCCeEEEECCCCC-----CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ-----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         3 v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~-----l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |+|++|...| .+.++|+++|+++++++...+     ..++|+||++||+.+... .   ....+.++++.++++|+|||
T Consensus         1 i~i~d~g~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~-~---~~~~~~~~~~~~~~~PvlGI   75 (178)
T cd01744           1 VVVIDFGVKH-NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPAL-L---DEAIKTVRKLLGKKIPIFGI   75 (178)
T ss_pred             CEEEecCcHH-HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhH-h---HHHHHHHHHHHhCCCCEEEE
Confidence            6899997776 589999999999988764322     246999999999754322 1   23467888999999999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC---e
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD---V  154 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~---~  154 (215)
                      |+|+|+|+.++|+              ++.+.+             .++.|.             .+++.......   +
T Consensus        76 C~G~Q~l~~~~Gg--------------~v~~~~-------------~~~~g~-------------~~~v~~~~~~~~~~v  115 (178)
T cd01744          76 CLGHQLLALALGA--------------KTYKMK-------------FGHRGS-------------NHPVKDLITGRVYIT  115 (178)
T ss_pred             CHHHHHHHHHcCC--------------ceecCC-------------CCCCCC-------------ceeeEEcCCCCcEEE
Confidence            9999999999973              333211             111121             11221111111   2


Q ss_pred             EEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010          155 DVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD  208 (215)
Q Consensus       155 ~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~  208 (215)
                      ...|++.+.  ..+... .++|++...      ..+++++.  .++||+|||||++..
T Consensus       116 ~~~H~~~v~~~~lp~~~-~v~a~s~~~------~~i~a~~~~~~~i~GvQfHPE~~~~  166 (178)
T cd01744         116 SQNHGYAVDPDSLPGGL-EVTHVNLND------GTVEGIRHKDLPVFSVQFHPEASPG  166 (178)
T ss_pred             EcCceEEEcccccCCce-EEEEEECCC------CcEEEEEECCCCeEEEeeCCCCCCC
Confidence            345777663  233332 678876321      24666654  479999999999763

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.86  E-value=1.1e-21  Score=166.89  Aligned_cols=158  Identities=18%  Similarity=0.260  Sum_probs=95.0

Q ss_pred             HHHHHHHHCCCeEEEECCC---CC----CCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHc---C--CcEEEEeh
Q 028010           14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKM---G--KPVWGTCA   79 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~---~~----l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~---~--~PilGIC~   79 (215)
                      ++++++++.|+.++.+..+   +.    ++.+|+|++|||..+.  .+++...   ..+++.+++.   |  +|+||||+
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~---~~l~~~a~~~~~~g~~~Pv~GiCl  100 (273)
T cd01747          24 SYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTA---KIIYNLALERNDAGDYFPVWGTCL  100 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHH---HHHHHHHHHhhhcCCCCcEEEEcH
Confidence            5789999999997766533   22    5678999999986432  2233222   3344555443   3  89999999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccC-CCCCCcceeeeeeeCceeeecC-------
Q 028010           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVG-------  151 (215)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw-~~~~~~~~~~~~~~~pl~~~~~-------  151 (215)
                      |+|+|+.++++..    ..+         .             ..+.+|+ .++..   .....++++|++++       
T Consensus       101 G~QlL~~~~gg~~----~~~---------~-------------~~~~~~~~~~l~~---t~~~~~s~lF~~~p~~l~~~l  151 (273)
T cd01747         101 GFELLTYLTSGET----LLL---------E-------------ATEATNSALPLNF---TEDALQSRLFKRFPPDLLKSL  151 (273)
T ss_pred             HHHHHHHHhCCCc----ccc---------C-------------CCccccceEEEEE---ccccccChhhhcCCHHHHHHH
Confidence            9999999987420    000         0             0001111 11110   00012345555553       


Q ss_pred             ---CCeEEEEEeeCCCCc--c------ccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010          152 ---PDVDVLADYPVPSNK--V------LYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA  207 (215)
Q Consensus       152 ---~~~~~~Hs~~~~~~~--~------~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~  207 (215)
                         +.+|++|+|++.+..  .      .. .+++++++.   ++..+++.++..  |++|+|||||++.
T Consensus       152 ~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~-~vla~~~d~---~g~~fis~ie~~~~pi~gvQFHPEks~  216 (273)
T cd01747         152 ATEPLTMNNHRYGISPENFTENGLLSDFF-NVLTTNDDW---NGVEFISTVEAYKYPIYGVQWHPEKNA  216 (273)
T ss_pred             hcccHHHhhcccccCHhhcccccccccce-EEEEEEecC---CCceEEEEEEecCCceEEEecCCCccc
Confidence               247889999884321  1      11 467777651   125688999877  8999999999984

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.85  E-value=5.3e-21  Score=158.79  Aligned_cols=87  Identities=29%  Similarity=0.504  Sum_probs=68.5

Q ss_pred             CEEEEEecCCChH--HHHHHHHHCCCeEEEECCC-CCCCCcCEEEEcCCCcchH----HHHHhhCCHHHHHHHHHHcCCc
Q 028010            1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTM----ARLAEYHNLFPALREFVKMGKP   73 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~~-~~l~~~d~lil~GG~~~~~----~~l~~~~~l~~~i~~~~~~~~P   73 (215)
                      |||+||.++|.+.  ++.++|+++|+++.++... ..++++|+||+|||.+...    ..+.....+.++|+++.+.++|
T Consensus         1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p   80 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP   80 (227)
T ss_pred             CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence            8999999998753  6889999999998877543 3478899999999864210    1122223457889999999999


Q ss_pred             EEEEehHHHHHHHh
Q 028010           74 VWGTCAGLIFLANK   87 (215)
Q Consensus        74 ilGIC~G~QlLa~~   87 (215)
                      ++|||.|+|+|+++
T Consensus        81 vlgIC~G~QlLa~~   94 (227)
T TIGR01737        81 VLGICNGFQILVEA   94 (227)
T ss_pred             EEEECHHHHHHHHc
Confidence            99999999999986

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.83  E-value=4.4e-20  Score=169.67  Aligned_cols=161  Identities=17%  Similarity=0.144  Sum_probs=105.5

Q ss_pred             CEEEEEecCCChHH-HHHHHHHCCCeEEEECCCC-------CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHc
Q 028010            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-------QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (215)
Q Consensus         1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~-------~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~   70 (215)
                      |||.|+++.++|.. +.+.|+++|+++.++++..       ++.  ++|+|||.||+.+..+.     +....+.+.+..
T Consensus         2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-----~~~~~i~~~~~~   76 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-----GCMPELLTRLRG   76 (531)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-----CCCHHHHHHHhc
Confidence            49999999999985 6789999999988886421       122  46799999998765321     112233344456


Q ss_pred             CCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010           71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (215)
Q Consensus        71 ~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~  150 (215)
                      ++|+||||+|+|+|+.++|+              +|.+.+             .+..|+....    .  ....++|.++
T Consensus        77 ~iPILGIClG~QlLa~a~GG--------------~V~~~~-------------~~~~G~~~~i----~--~~~~~lf~~~  123 (531)
T PRK09522         77 KLPIIGICLGHQAIVEAYGG--------------YVGQAG-------------EILHGKASSI----E--HDGQAMFAGL  123 (531)
T ss_pred             CCCEEEEcHHHHHHHHhcCC--------------EEEeCC-------------ceeeeeEEEE----e--ecCCccccCC
Confidence            89999999999999999973              444321             1122331100    0  0244678887


Q ss_pred             CCC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010          151 GPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD  208 (215)
Q Consensus       151 ~~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~  208 (215)
                      +..  ++.+|++.+...|... +++|+++.        .+++++.  .++||+|||||....
T Consensus       124 ~~~~~v~~~Hs~~v~~lP~~l-~vlA~sd~--------~v~ai~~~~~~i~GVQFHPEs~~T  176 (531)
T PRK09522        124 TNPLPVARYHSLVGSNIPAGL-TINAHFNG--------MVMAVRHDADRVCGFQFHPESILT  176 (531)
T ss_pred             CCCcEEEEehheecccCCCCc-EEEEecCC--------CEEEEEECCCCEEEEEecCccccC
Confidence            654  4557777765455433 78887653        3455543  689999999997543

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.83  E-value=5.2e-20  Score=152.04  Aligned_cols=99  Identities=32%  Similarity=0.528  Sum_probs=77.4

Q ss_pred             CEEEEEecCCChH--HHHHHHH-HCCCeEEEEC-CCCCCCCcCEEEEcCCCcchH----HHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MVVGVLALQGSFN--EHIAALK-RLGVKGVEIR-KPDQLQNVSSLIIPGGESTTM----ARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~-~~G~~v~~~~-~~~~l~~~d~lil~GG~~~~~----~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |||+||.++|.+.  +..++|+ .+|+++..+. ...+++++|+||+|||++...    ..+.....+.++|+++.++++
T Consensus         1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~   80 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK   80 (219)
T ss_pred             CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence            8999999999774  5789999 8999987774 345788999999999865311    112222346788999999999


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccC
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFF  111 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~  111 (215)
                      |++|||.|+|+|+++            |++++++.+|..
T Consensus        81 ~ilgIC~G~qlLa~~------------GLL~g~l~~n~~  107 (219)
T PRK03619         81 PVLGICNGFQILTEA------------GLLPGALTRNAS  107 (219)
T ss_pred             EEEEECHHHHHHHHc------------CCCCCeEEEcCC
Confidence            999999999999985            566678887753

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.82  E-value=4.1e-19  Score=156.10  Aligned_cols=155  Identities=16%  Similarity=0.198  Sum_probs=101.5

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      +||+|+++ |.-.++.++|+++|++++++....   ++.  ++|+|+|+||+.+... ..   ...+.++++++.++|+|
T Consensus       178 ~~I~viD~-G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~-~~---~~~~~i~~~~~~~~Pil  252 (360)
T PRK12564        178 YKVVAIDF-GVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAA-LD---YAIEMIRELLEKKIPIF  252 (360)
T ss_pred             CEEEEEeC-CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHH-HH---HHHHHHHHHHHcCCeEE
Confidence            37999999 566689999999999999887532   222  5899999999754322 21   23578888888899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe-
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV-  154 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~-  154 (215)
                      |||+|+|+|+.++|+              ++.+.+             ..+.|.             .+|+...-..+. 
T Consensus       253 GIClG~QlLa~a~Gg--------------~v~kl~-------------~gh~G~-------------~~pv~~~~~~~~~  292 (360)
T PRK12564        253 GICLGHQLLALALGA--------------KTYKMK-------------FGHRGA-------------NHPVKDLETGKVE  292 (360)
T ss_pred             EECHHHHHHHHHhCC--------------cEeccC-------------CCccCC-------------ceeeEECCCCcEE
Confidence            999999999999973              333321             112232             122211111122 


Q ss_pred             --EEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCC
Q 028010          155 --DVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA  207 (215)
Q Consensus       155 --~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~  207 (215)
                        ...|+|.+.  ..+... .+++++..      ...+++++.  .++||+|||||...
T Consensus       293 its~~H~~~V~~~~lp~~l-~v~a~~~~------Dg~iegi~~~~~pi~gVQfHPE~~~  344 (360)
T PRK12564        293 ITSQNHGFAVDEDSLPANL-EVTHVNLN------DGTVEGLRHKDLPAFSVQYHPEASP  344 (360)
T ss_pred             EEecCcccEEcccccCCce-EEEEEeCC------CCcEEEEEECCCCEEEEEeCCcCCC
Confidence              335877763  233322 56666632      125677765  37999999999875

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.82  E-value=5.3e-20  Score=148.79  Aligned_cols=131  Identities=24%  Similarity=0.344  Sum_probs=89.4

Q ss_pred             HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHH--------HH-----HhhCCHHHHHHHHHHcCCc
Q 028010           14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMA--------RL-----AEYHNLFPALREFVKMGKP   73 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~--------~l-----~~~~~l~~~i~~~~~~~~P   73 (215)
                      ++.++|+.+|++++++....       .+.++|+||+|||.+....        ++     .......+.++.+++.++|
T Consensus        23 ~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~P  102 (189)
T cd01745          23 YYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKP  102 (189)
T ss_pred             HHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCC
Confidence            57899999999988887542       2467999999998643211        11     1001125778888889999


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~  153 (215)
                      +||||+|+|+|+.++|+              ++.+.                                   +       .
T Consensus       103 ilgiC~G~Q~l~~~~Gg--------------~v~~~-----------------------------------~-------~  126 (189)
T cd01745         103 ILGICRGMQLLNVALGG--------------TLYQD-----------------------------------I-------R  126 (189)
T ss_pred             EEEEcchHHHHHHHhCC--------------eEEcC-----------------------------------C-------c
Confidence            99999999999999973              33321                                   0       2


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeC---CEEEEeeCCccCCC
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPELTAD  208 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~---~v~g~QFHPE~s~~  208 (215)
                      +...|++.+...++.. +++|+++.+       .+++++.+   +++|+|||||.+..
T Consensus       127 v~~~H~~~v~~~~~~~-~vla~~~d~-------~vea~~~~~~~~~~gvQfHPE~~~~  176 (189)
T cd01745         127 VNSLHHQAIKRLADGL-RVEARAPDG-------VIEAIESPDRPFVLGVQWHPEWLAD  176 (189)
T ss_pred             eechHHHHHhhcCCCC-EEEEECCCC-------cEEEEEeCCCCeEEEEecCCCcCcc
Confidence            2335666554333322 677877655       56666543   79999999999775

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.81  E-value=5.8e-19  Score=154.93  Aligned_cols=83  Identities=17%  Similarity=0.324  Sum_probs=65.0

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      ||+|+++ |.-.++.++|+++|++++++....   ++.  .+|+|||+||+.+.. .+.   ...+.++++++ ++|+||
T Consensus       175 ~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~-~~~---~~i~~i~~~~~-~~PILG  248 (358)
T TIGR01368       175 RVVVIDF-GVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA-AVE---PAIETIRKLLE-KIPIFG  248 (358)
T ss_pred             EEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH-HHH---HHHHHHHHHHc-CCCEEE
Confidence            7999999 666789999999999998886433   222  359999999976542 221   23577888876 999999


Q ss_pred             EehHHHHHHHhhcc
Q 028010           77 TCAGLIFLANKAVG   90 (215)
Q Consensus        77 IC~G~QlLa~~~~~   90 (215)
                      ||+|+|+|+.++|+
T Consensus       249 IClG~QlLa~a~Gg  262 (358)
T TIGR01368       249 ICLGHQLLALAFGA  262 (358)
T ss_pred             ECHHHHHHHHHhCC
Confidence            99999999999974

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.81  E-value=5.8e-19  Score=156.45  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=100.2

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCCCC---C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~---l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      ||+++++ |+-.++.+.|+++|++++++....+   +  .++|+|||+||+.+.. ...   ...+.+++.+ .++|+||
T Consensus       242 ~IvviD~-G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~---~~ie~ik~l~-~~iPIlG  315 (415)
T PLN02771        242 HVIAYDF-GIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVP---YAVETVKELL-GKVPVFG  315 (415)
T ss_pred             EEEEECC-ChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-Hhh---HHHHHHHHHH-hCCCEEE
Confidence            6788888 7788899999999999999875432   2  3689999999976542 222   2356666665 4799999


Q ss_pred             EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeE-
Q 028010           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD-  155 (215)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~-  155 (215)
                      ||+|+|+|+.++|              +++.+.++             .+.|-             .+|+.......++ 
T Consensus       316 ICLGhQlLa~AlG--------------Gkv~K~~~-------------Gh~G~-------------n~pV~~~~~~~v~i  355 (415)
T PLN02771        316 ICMGHQLLGQALG--------------GKTFKMKF-------------GHHGG-------------NHPVRNNRTGRVEI  355 (415)
T ss_pred             EcHHHHHHHHhcC--------------CeEEECCC-------------Ccccc-------------eEEEEECCCCCEEE
Confidence            9999999999997              45555432             22231             3343322223444 


Q ss_pred             --EEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCC
Q 028010          156 --VLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA  207 (215)
Q Consensus       156 --~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~  207 (215)
                        ..|+|.+.  ..+... .+++.+..      ...+++++.  .+++|+|||||.+.
T Consensus       356 tsqnHg~aVd~~sLp~~~-~vt~~nln------Dgtvegi~~~~~pi~gVQFHPEa~p  406 (415)
T PLN02771        356 SAQNHNYAVDPASLPEGV-EVTHVNLN------DGSCAGLAFPALNVMSLQYHPEASP  406 (415)
T ss_pred             EecCHHHhhccccCCCce-EEEEEeCC------CCcEEEEEECCCCEEEEEcCCCCCC
Confidence              35777662  233322 56665522      124556553  48999999999865

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.81  E-value=2.1e-19  Score=165.83  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=107.9

Q ss_pred             EEEEecCCChH-HHHHHHHHCCCe-EEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            3 VGVLALQGSFN-EHIAALKRLGVK-GVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         3 v~il~~~G~~~-s~~~~l~~~G~~-v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      |.|++..++|. .+.+.|+++|.+ +.++.+.+    ++  .++|+||++||+.+..+. .   ...+.++. +..++|+
T Consensus         2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~-~---~~~~li~~-~~~~~Pv   76 (534)
T PRK14607          2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEA-G---ISVEVIRH-FSGKVPI   76 (534)
T ss_pred             EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhC-C---ccHHHHHH-hhcCCCE
Confidence            88899888887 578899999996 76664322    22  257999999998765322 1   12455655 4678999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC-
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-  153 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-  153 (215)
                      ||||+|||+|+.++|              +++.+.+             .++.|+.....      ....++|.++++. 
T Consensus        77 LGIClG~QlLa~a~G--------------g~V~~~~-------------~~~~G~~~~v~------~~~~~lf~~~~~~~  123 (534)
T PRK14607         77 LGVCLGHQAIGYAFG--------------GKIVHAK-------------RILHGKTSPID------HNGKGLFRGIPNPT  123 (534)
T ss_pred             EEEcHHHHHHHHHcC--------------CeEecCC-------------ccccCCceeEE------ECCCcchhcCCCCc
Confidence            999999999999987              3444421             22445532211      1245688888654 


Q ss_pred             -eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010          154 -VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA  207 (215)
Q Consensus       154 -~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~  207 (215)
                       ++.+|++.+.  ..+.. ..++|++++|       .+++++.+  ++||+|||||...
T Consensus       124 ~v~~~Hs~~v~~~~lp~~-~~vlA~s~d~-------~i~a~~~~~~pi~GvQFHPE~~~  174 (534)
T PRK14607        124 VATRYHSLVVEEASLPEC-LEVTAKSDDG-------EIMGIRHKEHPIFGVQFHPESIL  174 (534)
T ss_pred             EEeeccchheecccCCCC-eEEEEEcCCC-------CEEEEEECCCCEEEEEeCCCCCC
Confidence             5667887763  23333 2788998876       46666653  6999999999864

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.80  E-value=7.6e-19  Score=167.00  Aligned_cols=164  Identities=14%  Similarity=0.167  Sum_probs=104.2

Q ss_pred             CEEEEEecCCChH-HHHHHHHHC-C--CeEEEECCC-------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH
Q 028010            1 MVVGVLALQGSFN-EHIAALKRL-G--VKGVEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK   69 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~-G--~~v~~~~~~-------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~   69 (215)
                      |||+++++.++|. .+++.|++. |  +++.+++..       +++..+|+|||+||+..... ...    ...+++..+
T Consensus         6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~-~~~----~~i~~~i~~   80 (742)
T TIGR01823         6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNN-AQD----MGIISELWE   80 (742)
T ss_pred             ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccc-hhh----hHHHHHHHH
Confidence            6899999998887 577888886 3  566666542       13457999999988764321 111    123333333


Q ss_pred             ----cCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCc
Q 028010           70 ----MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP  145 (215)
Q Consensus        70 ----~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~p  145 (215)
                          .++|+||||+|+|+|+.++|              +++.+++             .++.|+....    .  ....+
T Consensus        81 ~~~~~~iPvLGIClG~QlLa~a~G--------------G~v~~~~-------------~~~hG~~~~v----~--~~~~~  127 (742)
T TIGR01823        81 LANLDEVPVLGICLGFQSLCLAQG--------------ADISRLP-------------TPKHGQVYEM----H--TNDAA  127 (742)
T ss_pred             hcccCCCcEEEEchhhHHHHhhcC--------------CEEEECC-------------CCCcCeEEEE----E--ECCcc
Confidence                25999999999999999987              3455432             3455652110    1  02456


Q ss_pred             eeeecCC-CeEEEEEeeCCCCcccc--CCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          146 AVLDVGP-DVDVLADYPVPSNKVLY--SSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       146 l~~~~~~-~~~~~Hs~~~~~~~~~~--~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                      +|.+++. .++.+|++.+.......  +.+++.++++      ..+++++  ..++||+|||||....
T Consensus       128 lf~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~------~~i~ai~h~~~pi~GVQFHPE~~~s  189 (742)
T TIGR01823       128 IFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEG------IILMSAQTKKKPWFGVQYHPESCCS  189 (742)
T ss_pred             ccCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCC------CeEEEEEEcCCceEEEEeCcccCCC
Confidence            7888754 56788998874422211  1345555543      3566665  5589999999998543

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.80  E-value=2.3e-18  Score=150.93  Aligned_cols=83  Identities=16%  Similarity=0.326  Sum_probs=65.4

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ++|+++++ |...++.++|+++|+++.++....   ++  .++|+||++||+.+..+..    ...+.+++++++ +|+|
T Consensus       168 ~~V~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~----~~~~~i~~~~~~-~Pvl  241 (354)
T PRK12838        168 KHVALIDF-GYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ----PYLPEIKKLISS-YPIL  241 (354)
T ss_pred             CEEEEECC-CHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH----HHHHHHHHHhcC-CCEE
Confidence            37899999 677889999999999998886432   23  2689999999986543221    235678887766 9999


Q ss_pred             EEehHHHHHHHhhc
Q 028010           76 GTCAGLIFLANKAV   89 (215)
Q Consensus        76 GIC~G~QlLa~~~~   89 (215)
                      |||+|+|+|+.++|
T Consensus       242 GIClG~QlLa~a~G  255 (354)
T PRK12838        242 GICLGHQLIALALG  255 (354)
T ss_pred             EECHHHHHHHHHhC
Confidence            99999999999997

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.78  E-value=9.1e-18  Score=148.25  Aligned_cols=84  Identities=15%  Similarity=0.321  Sum_probs=65.1

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      +||+|+++ |.-.++.+.|+++|+++.++....   ++  .++|+|+++||+.+... ..   .+.+.++++++.++|+|
T Consensus       193 ~~I~viD~-g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~-~~---~~i~~i~~~~~~~~Pil  267 (382)
T CHL00197        193 LKIIVIDF-GVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSA-IH---YGIKTVKKLLKYNIPIF  267 (382)
T ss_pred             CEEEEEEC-CcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhH-HH---HHHHHHHHHHhCCCCEE
Confidence            48999999 544569999999999999986532   22  26899999998765321 11   23567777777799999


Q ss_pred             EEehHHHHHHHhhc
Q 028010           76 GTCAGLIFLANKAV   89 (215)
Q Consensus        76 GIC~G~QlLa~~~~   89 (215)
                      |||+|+|+|+.++|
T Consensus       268 GIClGhQlLa~a~G  281 (382)
T CHL00197        268 GICMGHQILSLALE  281 (382)
T ss_pred             EEcHHHHHHHHHhC
Confidence            99999999999997

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.78  E-value=4.9e-18  Score=143.45  Aligned_cols=85  Identities=33%  Similarity=0.590  Sum_probs=66.0

Q ss_pred             CEEEEEecCCCh--HHHHHHHHHCCCeEEEECCC------CCCCCcCEEEEcCCCcch--H-------HHHHhhCCHHHH
Q 028010            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPA   63 (215)
Q Consensus         1 m~v~il~~~G~~--~s~~~~l~~~G~~v~~~~~~------~~l~~~d~lil~GG~~~~--~-------~~l~~~~~l~~~   63 (215)
                      |||+||.++|..  .+..++|+++|+++.++...      .+++++|+|++|||++..  .       ..+.  ..+.+.
T Consensus         4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~--~~l~~~   81 (261)
T PRK01175          4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK--AVLRKD   81 (261)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH--HHHHHH
Confidence            599999999964  46789999999998776531      346789999999996421  1       1221  124478


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHh
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      |++++++++|+||||.|+|+|+++
T Consensus        82 Ik~f~~~gkpVLGICnG~QlLa~~  105 (261)
T PRK01175         82 IEEFIDEGYPIIGICNGFQVLVEL  105 (261)
T ss_pred             HHHHHHCCCeEEEECHHHHHHHHC
Confidence            899999999999999999999985

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=99.78  E-value=3e-18  Score=139.54  Aligned_cols=113  Identities=19%  Similarity=0.355  Sum_probs=92.3

Q ss_pred             cCCChHHHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHH
Q 028010            8 LQGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL   84 (215)
Q Consensus         8 ~~G~~~s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlL   84 (215)
                      |.-.|.+..++|+++|++++.+++.  +++.++|+||||||.+. .+++|.++.++.+.|++++++|+|++|||.|+|+|
T Consensus         9 F~f~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL   88 (198)
T cd03130           9 FNFYYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYL   88 (198)
T ss_pred             cccccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHH
Confidence            5556889999999999999999874  66777999999999754 36677655578899999999999999999999999


Q ss_pred             HHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCC
Q 028010           85 ANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGG  133 (215)
Q Consensus        85 a~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~  133 (215)
                      ++.+.+......++||++|+++...+            +. ++||+.+.
T Consensus        89 ~~~~~d~~g~~~~glGll~~~~~~~~------------~~-~~g~~~~~  124 (198)
T cd03130          89 GESLDDEEGQSYPMAGVLPGDARMTK------------RL-GLGYREAE  124 (198)
T ss_pred             HHHhhccCCCEeccccccceeeEEcC------------CC-cccCEEEE
Confidence            99997532235789999999998742            23 88997654

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.77  E-value=3.6e-18  Score=138.83  Aligned_cols=99  Identities=30%  Similarity=0.500  Sum_probs=78.9

Q ss_pred             CEEEEEecCCChH--HHHHHHHHCCCeEEEECCCC-CCC-CcCEEEEcCCCcch----HHHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKPD-QLQ-NVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~~~-~l~-~~d~lil~GG~~~~----~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |||+||.|+|...  +...+++++|.+...+.-.+ .+. ++|+|++|||++..    ..++.+...+.+.++++++.|+
T Consensus         3 ~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~   82 (231)
T COG0047           3 PKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGK   82 (231)
T ss_pred             ceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCC
Confidence            6999999999766  57889999999988776433 345 69999999998631    2234444567889999999999


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccC
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFF  111 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~  111 (215)
                      |+||||.|+|+|.++            |++++..++|..
T Consensus        83 ~vLGICNGfQiL~e~------------gLlPGal~~N~s  109 (231)
T COG0047          83 PVLGICNGFQILSEA------------GLLPGALTRNES  109 (231)
T ss_pred             eEEEEcchhHHHHHc------------CcCCcceecCCC
Confidence            999999999999954            778888888753

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.76  E-value=7e-18  Score=161.66  Aligned_cols=139  Identities=14%  Similarity=0.130  Sum_probs=88.5

Q ss_pred             CEEEEEecCCChHH-HHHHHHHC-CCeEEEECCCC----C-------CCCcCEEEEcCCCcch--HHHHHhhCCHHHHHH
Q 028010            1 MVVGVLALQGSFNE-HIAALKRL-GVKGVEIRKPD----Q-------LQNVSSLIIPGGESTT--MARLAEYHNLFPALR   65 (215)
Q Consensus         1 m~v~il~~~G~~~s-~~~~l~~~-G~~v~~~~~~~----~-------l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~   65 (215)
                      |||.+++..++|.. ++..|+++ |.+++++++.+    +       +..+|+|||.||+...  ...+.   -..+.|+
T Consensus        82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~G---i~~~~i~  158 (918)
T PLN02889         82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIG---ICLRLLL  158 (918)
T ss_pred             ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHH---HHHHHHH
Confidence            78999999998884 67889888 99988876542    1       2468999998887532  11221   1134444


Q ss_pred             HHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCc
Q 028010           66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP  145 (215)
Q Consensus        66 ~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~p  145 (215)
                      ++  .++||||||+|||+|+.++|              ++|.+.             +.|..|+...    +.  .....
T Consensus       159 ~~--~~iPILGICLGhQ~i~~~~G--------------g~V~~~-------------~~~~HG~~s~----I~--h~~~~  203 (918)
T PLN02889        159 EC--RDIPILGVCLGHQALGYVHG--------------ARIVHA-------------PEPVHGRLSE----IE--HNGCR  203 (918)
T ss_pred             Hh--CCCcEEEEcHHHHHHHHhcC--------------ceEEeC-------------CCceeeeeee----Ee--ecCch
Confidence            42  47999999999999999997              345442             2344554211    00  02456


Q ss_pred             eeeecCC------CeEEEEEeeCC--CCccccCCcceeeec
Q 028010          146 AVLDVGP------DVDVLADYPVP--SNKVLYSSSTVEIQE  178 (215)
Q Consensus       146 l~~~~~~------~~~~~Hs~~~~--~~~~~~~~~la~s~~  178 (215)
                      +|++++.      .+..+||..+.  ..|... .++|+++.
T Consensus       204 lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L-~~~A~t~~  243 (918)
T PLN02889        204 LFDDIPSGRNSGFKVVRYHSLVIDAESLPKEL-VPIAWTSS  243 (918)
T ss_pred             hhcCCCcCCCCCceEEeCCCcccccCCCCCce-EEEEEECC
Confidence            8888854      34456887663  223322 56777654

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.76  E-value=1.3e-18  Score=138.70  Aligned_cols=173  Identities=16%  Similarity=0.114  Sum_probs=112.1

Q ss_pred             EEEEEec----------CCChHHH-HHHHHHCCCeEEE---ECC----CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            2 VVGVLAL----------QGSFNEH-IAALKRLGVKGVE---IRK----PDQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il~~----------~G~~~s~-~~~l~~~G~~v~~---~~~----~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      |++++..          .|+|..+ +..|.+-|.....   ++.    .+|+++||++||+|+..++.+...|...|...
T Consensus         6 r~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~   85 (245)
T KOG3179|consen    6 RIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKKLCSF   85 (245)
T ss_pred             eEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHHHHHH
Confidence            6777653          3555544 4566677765433   332    25788999999999865544344444567888


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeee
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIR  143 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~  143 (215)
                      +++.....++|+|||+|||++|++.|.              +|.|++.            -|.++..+++.-....  ..
T Consensus        86 ~kkld~mkkkvlGICFGHQiiara~Gg--------------~Vgra~K------------G~~~~lg~itivk~~~--~~  137 (245)
T KOG3179|consen   86 VKKLDFMKKKVLGICFGHQIIARAKGG--------------KVGRAPK------------GPDLGLGSITIVKDAE--KP  137 (245)
T ss_pred             HHHHHhhccceEEEeccHHHHHHhhCC--------------ccccCCC------------CCcccccceEEEEecc--cc
Confidence            888888899999999999999999874              3444432            2233332222100000  01


Q ss_pred             CceeeecCC--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010          144 APAVLDVGP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT  209 (215)
Q Consensus       144 ~pl~~~~~~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~  209 (215)
                      ..+|..++.  +.--.|++.+...|+. +.++|+|+.|      .+..+.+.++++.+|-|||.+.+.
T Consensus       138 ~~yFG~~~~~l~IikcHqDevle~PE~-a~llasSe~c------eve~fs~~~~~l~fQGHPEyn~ei  198 (245)
T KOG3179|consen  138 EKYFGEIPKSLNIIKCHQDEVLELPEG-AELLASSEKC------EVEMFSIEDHLLCFQGHPEYNKEI  198 (245)
T ss_pred             hhhcccchhhhhHHhhcccceecCCch-hhhhcccccc------ceEEEEecceEEEecCCchhhHHH
Confidence            112322222  2344799888766664 4899999998      577888888999999999998654

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.75  E-value=3.1e-18  Score=144.45  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=92.4

Q ss_pred             HHHHHHHHCCCeEEEECCC----CC----CCCcCEEEEcCCCcch----H------HHHHhh--CCHHHHHHHHHHcCCc
Q 028010           14 EHIAALKRLGVKGVEIRKP----DQ----LQNVSSLIIPGGESTT----M------ARLAEY--HNLFPALREFVKMGKP   73 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~----~~----l~~~d~lil~GG~~~~----~------~~l~~~--~~l~~~i~~~~~~~~P   73 (215)
                      .+.++++++|....++...    +.    ++.+|+||++||..+.    +      .+....  .-..++|+.++++++|
T Consensus        30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~P  109 (254)
T PRK11366         30 KYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIP  109 (254)
T ss_pred             HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCC
Confidence            4678888888766555532    11    2569999999984321    1      000000  1224788888999999


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCC-Ccceeee--eecccC--cccCCCCCCcceeeeeeeCceee
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG-SQIQSFE--AELSVP--ALASQEGGPETFRGVFIRAPAVL  148 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~-~~~~~~~--~~~~~p--~~Gw~~~~~~~~~~~~~~~pl~~  148 (215)
                      +||||+|+|+|+.++|+              ++.+.... .......  ...+.+  ...++.+..       ..+.++.
T Consensus       110 ILGICrG~Qllnva~GG--------------tl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~-------~~~s~l~  168 (254)
T PRK11366        110 IFAICRGLQELVVATGG--------------SLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQV-------EEGGLLS  168 (254)
T ss_pred             EEEECHhHHHHHHHhCC--------------eEeecccccccccccccCCccccccccCCceEEEE-------CCCCcHH
Confidence            99999999999999974              22221000 0000000  000000  001111111       2333444


Q ss_pred             ec-C--CCeEE--EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeC-C--EEEEeeCCccCCC
Q 028010          149 DV-G--PDVDV--LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG-N--LLGTAFHPELTAD  208 (215)
Q Consensus       149 ~~-~--~~~~~--~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~-~--v~g~QFHPE~s~~  208 (215)
                      .+ +  +.+.+  +|+..+...++.. .++|+++.|       .+++++.. +  ++|+|||||...+
T Consensus       169 ~i~~~~~~~~Vns~H~q~V~~l~~gl-~v~A~s~dg-------~ieAie~~~~~~~~GVQwHPE~~~~  228 (254)
T PRK11366        169 ALLPECSNFWVNSLHGQGAKVVSPRL-RVEARSPDG-------LVEAVSVINHPFALGVQWHPEWNSS  228 (254)
T ss_pred             HhcCCCceEEeehHHHHHHhhcccce-EEEEEcCCC-------cEEEEEeCCCCCEEEEEeCCCcCCC
Confidence            44 2  23443  3554555455443 789998876       67777643 3  7999999998764

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.74  E-value=5e-17  Score=139.79  Aligned_cols=155  Identities=17%  Similarity=0.265  Sum_probs=103.2

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCC---CCC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~---~~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      +|+++++ |--.++.+.|.++|++++++...   +++  .+.|+|+|+-|+++. ..+.   ...+.|++.++..+|++|
T Consensus       181 ~Vv~iD~-GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP-~~~~---~~i~~ik~l~~~~iPifG  255 (368)
T COG0505         181 HVVVIDF-GVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP-APLD---YAIETIKELLGTKIPIFG  255 (368)
T ss_pred             EEEEEEc-CccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh-hHHH---HHHHHHHHHhccCCCeEE
Confidence            6888888 77778999999999999999754   333  478999999987754 2232   236789999988889999


Q ss_pred             EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEE
Q 028010           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV  156 (215)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~  156 (215)
                      ||+|+|||+.++|.              +..|..||             |.|-             ++|..+-...+++.
T Consensus       256 ICLGHQllalA~Ga--------------~T~KmkFG-------------HrG~-------------NhPV~dl~tgrv~I  295 (368)
T COG0505         256 ICLGHQLLALALGA--------------KTYKMKFG-------------HRGA-------------NHPVKDLDTGRVYI  295 (368)
T ss_pred             EcHHHHHHHHhcCC--------------ceeecccC-------------CCCC-------------CcCcccccCCeEEE
Confidence            99999999999984              34443332             4453             34444333456655


Q ss_pred             E---EEeeCCCCccc-cCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCC
Q 028010          157 L---ADYPVPSNKVL-YSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA  207 (215)
Q Consensus       157 ~---Hs~~~~~~~~~-~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~  207 (215)
                      .   |.|.+...... ...+.-.+-.      ...+..++.  .+++.+|||||.+.
T Consensus       296 TSQNHGyaVd~~s~~~~~~vth~nln------DgTvEGi~h~~~P~fSVQ~HPEAsP  346 (368)
T COG0505         296 TSQNHGYAVDEDSLVETLKVTHVNLN------DGTVEGIRHKDLPAFSVQYHPEASP  346 (368)
T ss_pred             EecCCceecChhhcCCCceeEEEeCC------CCCccceecCCCceEEEccCCCCCC
Confidence            3   77776533110 0012222221      123455543  47999999999875

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.73  E-value=3.7e-17  Score=140.22  Aligned_cols=165  Identities=16%  Similarity=0.099  Sum_probs=100.6

Q ss_pred             CEEEEEecCCChHHHHHH-HHHCC-----CeEEEECCC-------------------CCC--CCcCEEEEcCCCcc--hH
Q 028010            1 MVVGVLALQGSFNEHIAA-LKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGEST--TM   51 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~-l~~~G-----~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~--~~   51 (215)
                      +||+||++.-+-....+- ++.++     +++..+...                   +++  .++||+||+|++-.  ..
T Consensus        36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f  115 (302)
T PRK05368         36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF  115 (302)
T ss_pred             ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence            489999997766654433 33333     334444321                   122  47999999998643  22


Q ss_pred             HHHH-h--hCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCC--CCCccccceeeeEEEeccCCCcceeeeeecccCc
Q 028010           52 ARLA-E--YHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK--LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA  126 (215)
Q Consensus        52 ~~l~-~--~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~--~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~  126 (215)
                      +... |  ...+.++++   +..+|+||||+|+|+++.++++..  ..+.++.|+...++                    
T Consensus       116 edv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~--------------------  172 (302)
T PRK05368        116 EDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRV--------------------  172 (302)
T ss_pred             CCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEE--------------------
Confidence            2211 1  122334444   368999999999999999997521  11112233221111                    


Q ss_pred             ccCCCCCCcceeeeeeeCceeeecCCCeEEEEEeeCCC------CccccCCcceeeecccCCCCCceEEEEe-eCCEEEE
Q 028010          127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPS------NKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGT  199 (215)
Q Consensus       127 ~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~------~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~  199 (215)
                            .    .   ..+||+.+++..|+.-||.....      .++ .+.+||+|+.+      .+.++.. +++++++
T Consensus       173 ------~----~---~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~-~l~vLA~S~~~------gv~~~~~~~~r~~~v  232 (302)
T PRK05368        173 ------L----D---PHHPLLRGFDDSFLVPHSRYTEVREEDIRAAT-GLEILAESEEA------GVYLFASKDKREVFV  232 (302)
T ss_pred             ------c----C---CCChhhcCCCCccccceeehhhccHHHhccCC-CCEEEecCCCC------CeEEEEeCCCCEEEE
Confidence                  0    0   25689999988888888864422      233 23789999877      3444444 5579999


Q ss_pred             eeCCccCCC
Q 028010          200 AFHPELTAD  208 (215)
Q Consensus       200 QFHPE~s~~  208 (215)
                      |+|||.+.+
T Consensus       233 QgHPEYd~~  241 (302)
T PRK05368        233 TGHPEYDAD  241 (302)
T ss_pred             ECCCCCCHH
Confidence            999999865

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.70  E-value=3.5e-17  Score=135.06  Aligned_cols=160  Identities=22%  Similarity=0.341  Sum_probs=85.2

Q ss_pred             HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcch------------HHHHHhhCCH--HHHHHHHHHcCC
Q 028010           14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTT------------MARLAEYHNL--FPALREFVKMGK   72 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~------------~~~l~~~~~l--~~~i~~~~~~~~   72 (215)
                      +++++++.+|..+..+....       -++.+|+|++|||..+.            .......++.  ..+++.+.++++
T Consensus        28 ~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~  107 (217)
T PF07722_consen   28 SYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK  107 (217)
T ss_dssp             HHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred             HHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence            68999999999988886542       14689999999986211            0111111111  356777778899


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccc-cceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQEL-VGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-  150 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~-lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-  150 (215)
                      |+||||.|||+|..++|+......+. .+..+.....                ....++.+.       ...+.++..+ 
T Consensus       108 PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~----------------~~~~~h~v~-------i~~~s~l~~~~  164 (217)
T PF07722_consen  108 PILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHP----------------QDFPSHPVR-------IVPGSLLAKIL  164 (217)
T ss_dssp             -EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-----------------TS--EEEE-------EETTSTCCCTS
T ss_pred             CEEEEcHHHHHHHHHhCCCceeecccCcCcccccccc----------------cccccccce-------eccCchHHHHh
Confidence            99999999999999987531111110 1111110000                011111111       1233344444 


Q ss_pred             C-C--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe---eC-CEEEEeeCCc
Q 028010          151 G-P--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR---QG-NLLGTAFHPE  204 (215)
Q Consensus       151 ~-~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~---~~-~v~g~QFHPE  204 (215)
                      + .  .+..+|.+.+....+.. .++|.+.++       .+.+++   +. +++|+|||||
T Consensus       165 ~~~~~~vns~Hhq~v~~l~~~l-~v~A~s~Dg-------~iEaie~~~~~~~~~GvQwHPE  217 (217)
T PF07722_consen  165 GSEEIEVNSFHHQAVKPLGEGL-RVTARSPDG-------VIEAIESPEHKYPILGVQWHPE  217 (217)
T ss_dssp             HHCTEEEEEEECEEECCHHCCE-EEEEEECTS-------SEEEEEECCESS-EEEESS-CC
T ss_pred             CcCcceeecchhhhhhccCCCc-eEEEEecCC-------cEEEEEEcCCCCCEEEEEeCCC
Confidence            2 2  35667777776655444 678888865       456654   33 6999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=99.69  E-value=2.7e-16  Score=127.61  Aligned_cols=105  Identities=26%  Similarity=0.431  Sum_probs=85.9

Q ss_pred             EEEEec--CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            3 VGVLAL--QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         3 v~il~~--~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      |+|+.+  .||+.++.+++++.|+++++++..+++.++|+||||||....  +.++. +..+.+.|++++++|+|+||||
T Consensus         1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~-~~~~~~~i~~~~~~g~pvlgiC   79 (194)
T cd01750           1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLR-KRGLAEAIKNYARAGGPVLGIC   79 (194)
T ss_pred             CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHH-HcCHHHHHHHHHHCCCcEEEEC
Confidence            466676  579999999999999999999988888899999999997432  33332 3578899999999999999999


Q ss_pred             hHHHHHHHhhccCCC----CCccccceeeeEEEe
Q 028010           79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHR  108 (215)
Q Consensus        79 ~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~~  108 (215)
                      .|+|+|++.+.+...    +..++||++|++++.
T Consensus        80 ~G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~  113 (194)
T cd01750          80 GGYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEF  113 (194)
T ss_pred             HHHHHhhhhccCCCCcccCCCcccccccceEEEe
Confidence            999999999864321    126899999998875

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK06186 hypothetical protein; Validated

Probab=99.68  E-value=4.3e-17  Score=134.56  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=60.7

Q ss_pred             EEEEE----ecCCChHHHHHHHHHCCC----eEE--EECCC-----CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHH
Q 028010            2 VVGVL----ALQGSFNEHIAALKRLGV----KGV--EIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE   66 (215)
Q Consensus         2 ~v~il----~~~G~~~s~~~~l~~~G~----~v~--~~~~~-----~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~   66 (215)
                      ||+++    .+..+|.|+.++|+.+|+    ++.  .++..     +.|+++|+|++|||++..  ..   .+....++.
T Consensus         3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~r--g~---~Gki~ai~~   77 (229)
T PRK06186          3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYR--ND---DGALTAIRF   77 (229)
T ss_pred             EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcc--cH---hHHHHHHHH
Confidence            56664    367889999999998763    333  34321     246789999999997641  11   345678899


Q ss_pred             HHHcCCcEEEEehHHHHHHHhhc
Q 028010           67 FVKMGKPVWGTCAGLIFLANKAV   89 (215)
Q Consensus        67 ~~~~~~PilGIC~G~QlLa~~~~   89 (215)
                      +.++++|+||||+|||++.-.+.
T Consensus        78 Are~~iP~LGIClGmQ~avIe~a  100 (229)
T PRK06186         78 ARENGIPFLGTCGGFQHALLEYA  100 (229)
T ss_pred             HHHcCCCeEeechhhHHHHHHHH
Confidence            99999999999999998665553

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=99.66  E-value=9.1e-16  Score=129.40  Aligned_cols=190  Identities=24%  Similarity=0.304  Sum_probs=105.3

Q ss_pred             EEEEEecCCChH--HHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch--------H-HHHHhhCCHHHHH
Q 028010            2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT--------M-ARLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~--------~-~~l~~~~~l~~~i   64 (215)
                      ||+||.+.|...  +...+|+..|++++.+..      ...++++|+|++|||++..        . ..+..+..+.+.|
T Consensus         3 kV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i   82 (259)
T PF13507_consen    3 KVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAI   82 (259)
T ss_dssp             EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHH
Confidence            899999999655  678999999999887642      3478899999999987531        1 1222124678999


Q ss_pred             HHHHHc-CCcEEEEehHHHHHHHhhccCCCCCccccceeee----------EEEeccCCCcceeeeeec---cc----Cc
Q 028010           65 REFVKM-GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDC----------TVHRNFFGSQIQSFEAEL---SV----PA  126 (215)
Q Consensus        65 ~~~~~~-~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~----------~v~~~~~~~~~~~~~~~~---~~----p~  126 (215)
                      ++++++ |+++||||-|+|+|.+.            |++++          ..++|..++    |++.+   .+    |.
T Consensus        83 ~~f~~~~g~~vLGIcNGfQiL~~~------------Gllp~~~~~~~~~~~~L~~N~s~~----fe~rwv~~~v~~~s~~  146 (259)
T PF13507_consen   83 REFLERPGGFVLGICNGFQILVEL------------GLLPGGEIKDSEQSPALTPNASGR----FESRWVNLVVNENSPS  146 (259)
T ss_dssp             HHHHHCTT-EEEEECHHHHHHCCC------------CCSTT------TT--EEE--TTSS-----EEEEEEEEE--SSTT
T ss_pred             HHHHhcCCCeEEEEchHhHHHHHh------------CcCCCccccccCCCcEEcCCCCCC----eEEEEEEEEEecCCcc
Confidence            999998 99999999999999876            33333          666665433    33322   11    11


Q ss_pred             ccCCCCCCcceee------eee-eCceeeecCCCeEEEEEeeCCCCccccCCcceeeecccCCCC-CceEEEEe--eCCE
Q 028010          127 LASQEGGPETFRG------VFI-RAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPE-KKVIVAVR--QGNL  196 (215)
Q Consensus       127 ~Gw~~~~~~~~~~------~~~-~~pl~~~~~~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~-~~~~~~~~--~~~v  196 (215)
                      +--..++...++-      .+. +...++.+..+-++.-.|.+....+       +.+|.-|+|+ ...++++-  .|+|
T Consensus       147 ~~~~~~~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~-------a~~yP~NPNGS~~~IAGics~~Grv  219 (259)
T PF13507_consen  147 IFLRGLEGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNP-------AQEYPRNPNGSVNNIAGICSPDGRV  219 (259)
T ss_dssp             CCCTTTTCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB---------STTTSSS--GGGEEEEE-TTSSE
T ss_pred             eecCCCCEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCc-------ccCCCCCCCCCccceeEEEcCCCCE
Confidence            1111111100000      000 1112222233335555665542211       1234445555 35677775  6899


Q ss_pred             EEEeeCCccCCCCccccc
Q 028010          197 LGTAFHPELTADTRWYII  214 (215)
Q Consensus       197 ~g~QFHPE~s~~~~~~~~  214 (215)
                      +|+.+|||.+...-.+.+
T Consensus       220 lglMpHPEr~~~~~~~~~  237 (259)
T PF13507_consen  220 LGLMPHPERAFEPWQWPH  237 (259)
T ss_dssp             EEESSBCCGTTCCCCSS-
T ss_pred             EEEcCChHHhCchhhcCC
Confidence            999999999887766653

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.65  E-value=1.6e-15  Score=126.86  Aligned_cols=84  Identities=27%  Similarity=0.458  Sum_probs=65.6

Q ss_pred             EEEEecCCChH--HHHHHHHHCCCeEEEECCCC------CCCCcCEEEEcCCCcchHHHHH-----hhCC-HHHHHHHHH
Q 028010            3 VGVLALQGSFN--EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLA-----EYHN-LFPALREFV   68 (215)
Q Consensus         3 v~il~~~G~~~--s~~~~l~~~G~~v~~~~~~~------~l~~~d~lil~GG~~~~~~~l~-----~~~~-l~~~i~~~~   68 (215)
                      |+||.++|...  ++.++|++.|+++.++...+      +++++|+||+|||++.. +.+.     .... +.+.|++++
T Consensus         1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~-d~l~~~~~~~~~~~~~~~l~~~~   79 (238)
T cd01740           1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYG-DYLRAGAIAAASPLLMEEVKEFA   79 (238)
T ss_pred             CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcc-cccccccccccChhHHHHHHHHH
Confidence            68999999644  78999999999988876432      46789999999996421 1111     1122 678899999


Q ss_pred             HcCCcEEEEehHHHHHHHh
Q 028010           69 KMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        69 ~~~~PilGIC~G~QlLa~~   87 (215)
                      ++++|+||||.|+|+|+++
T Consensus        80 ~~g~pvlGIC~G~QlL~~~   98 (238)
T cd01740          80 ERGGLVLGICNGFQILVEL   98 (238)
T ss_pred             hCCCeEEEECcHHHHHHHc
Confidence            9999999999999999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.63  E-value=2.2e-16  Score=138.58  Aligned_cols=162  Identities=19%  Similarity=0.279  Sum_probs=106.0

Q ss_pred             EEEEEecCCChHHHH-HHHHHCCCeEEEECCC---CCC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFNEHI-AALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~s~~-~~l~~~G~~v~~~~~~---~~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      +|+||+|.-.|..++ +++|++.+...++.-.   ..+  -.+.++||.||+.+.++...  ..+...|-+   -++|+|
T Consensus        18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dA--P~~dp~if~---~~vpvL   92 (552)
T KOG1622|consen   18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDA--PSFDPAIFE---LGVPVL   92 (552)
T ss_pred             eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcC--CCCChhHhc---cCCcce
Confidence            799999988898765 6799998766655432   233  35789999999877654332  233444433   589999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-C-
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-D-  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~-  153 (215)
                      |||+|||++++..|+              .|.+.. .|            +-|-..+...      ...++|.++.. . 
T Consensus        93 GICYGmQ~i~~~~Gg--------------~V~~~~-~R------------E~G~~eI~v~------~~~~lF~~~~~~~~  139 (552)
T KOG1622|consen   93 GICYGMQLINKLNGG--------------TVVKGM-VR------------EDGEDEIEVD------DSVDLFSGLHKTEF  139 (552)
T ss_pred             eehhHHHHHHHHhCC--------------cccccc-cc------------CCCCceEEcC------chhhhhhhhcccce
Confidence            999999999999873              333211 01            1122222211      13457777722 2 


Q ss_pred             --eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEE--eeCCEEEEeeCCccCCCC
Q 028010          154 --VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAV--RQGNLLGTAFHPELTADT  209 (215)
Q Consensus       154 --~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~--~~~~v~g~QFHPE~s~~~  209 (215)
                        +...|++.....+... .+.|+|...       ..+++  +..++||+|||||++.+.
T Consensus       140 ~~VlltHgdsl~~v~~g~-kv~a~s~n~-------~va~i~~e~kkiyglqfhpEV~~t~  191 (552)
T KOG1622|consen  140 MTVLLTHGDSLSKVPEGF-KVVAFSGNK-------PVAGILNELKKIYGLQFHPEVTLTP  191 (552)
T ss_pred             eeeeeccccchhhccccc-eeEEeecCc-------ceeeehhhhhhhhcCCCCCcccccC
Confidence              5667888776666555 688888742       34444  345899999999998753

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.61  E-value=2.2e-15  Score=136.70  Aligned_cols=98  Identities=24%  Similarity=0.399  Sum_probs=71.2

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCC-eEEE--ECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGV-KGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~-~v~~--~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |||+||++++.+    ++++.+|. ++.+  ++.++++.++|+||||||.......+.  .++.+.|+++   |+|+|||
T Consensus         1 m~iGvlal~sv~----~al~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~~~l~--~~l~~~i~~~---g~pvlGI   71 (476)
T PRK06278          1 MEIGLLDIKGSL----PCFENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVESGSLT--DELKKEILNF---DGYIIGI   71 (476)
T ss_pred             CEEEEEehhhHH----HHHHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhcchHH--HHHHHHHHHc---CCeEEEE
Confidence            899999997755    45666665 4444  777888999999999998532222231  3455556554   9999999


Q ss_pred             ehHHHHHHHhhccCCC----CCccccceeeeEEE
Q 028010           78 CAGLIFLANKAVGQKL----GGQELVGGLDCTVH  107 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~  107 (215)
                      |.|||||++.+.+...    +..++||++|++..
T Consensus        72 CgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~~~  105 (476)
T PRK06278         72 CSGFQILSEKIDIGRKSPVPIIKEGLGLLDVEFS  105 (476)
T ss_pred             cHHHHhcccccccCcccccccccCccceeeeeec
Confidence            9999999999854221    23789999998743

>TIGR00337 PyrG CTP synthase

Probab=99.60  E-value=6.1e-15  Score=134.09  Aligned_cols=84  Identities=24%  Similarity=0.390  Sum_probs=62.0

Q ss_pred             EEEEEe----cCCChHHHHHHHHHCCC----eEEE--ECCC-------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010            2 VVGVLA----LQGSFNEHIAALKRLGV----KGVE--IRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~----~~G~~~s~~~~l~~~G~----~v~~--~~~~-------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i   64 (215)
                      ||+++-    +..+|.|+.++|+.+|+    .+.+  ++..       +.+.++|+|++|||+++..  .   .+..+.+
T Consensus       291 ~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~--~---~g~i~ai  365 (525)
T TIGR00337       291 TIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG--V---EGKILAI  365 (525)
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh--h---cChHHHH
Confidence            566643    55688999999999997    2322  2221       1256799999999986531  1   3456778


Q ss_pred             HHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010           65 REFVKMGKPVWGTCAGLIFLANKAVG   90 (215)
Q Consensus        65 ~~~~~~~~PilGIC~G~QlLa~~~~~   90 (215)
                      +.+.+.++|+||||+|||+++.+++.
T Consensus       366 ~~a~e~~iP~LGIClG~Qll~i~~gr  391 (525)
T TIGR00337       366 KYARENNIPFLGICLGMQLAVIEFAR  391 (525)
T ss_pred             HHHHHcCCCEEEEcHHHHHHHHHHHH
Confidence            88888999999999999999999864

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.60  E-value=1.7e-15  Score=137.73  Aligned_cols=84  Identities=23%  Similarity=0.399  Sum_probs=63.2

Q ss_pred             EEEEEe----cCCChHHHHHHHHHCCC----eEE--EECC--------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            2 VVGVLA----LQGSFNEHIAALKRLGV----KGV--EIRK--------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il~----~~G~~~s~~~~l~~~G~----~v~--~~~~--------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      +|+++-    +..+|.|+.++|+.+|+    ++.  .++.        .+.+.++|+|++|||++..  ..   .+..+.
T Consensus       290 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~--~~---~g~i~~  364 (533)
T PRK05380        290 TIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER--GI---EGKILA  364 (533)
T ss_pred             EEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc--cc---ccHHHH
Confidence            566643    56789999999999875    233  3332        1346789999999997642  11   345778


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAVG   90 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~~   90 (215)
                      ++.+.++++|+||||+|||+|+.+++.
T Consensus       365 i~~a~e~~iPiLGIClGmQll~va~Gg  391 (533)
T PRK05380        365 IRYARENNIPFLGICLGMQLAVIEFAR  391 (533)
T ss_pred             HHHHHHCCCcEEEEchHHHHHHHHhcc
Confidence            888888999999999999999999874

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.59  E-value=1.9e-14  Score=120.11  Aligned_cols=84  Identities=20%  Similarity=0.351  Sum_probs=58.9

Q ss_pred             EEEEEe----cCCChHHHHHHHHHC----CCeEEE--ECCC--------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            2 VVGVLA----LQGSFNEHIAALKRL----GVKGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il~----~~G~~~s~~~~l~~~----G~~v~~--~~~~--------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      ||+++-    +..+|.|+.++|+.+    +.++.+  ++..        +.+.++|+||++||++..  .+   .+..+.
T Consensus         2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~--~~---~~~~~~   76 (235)
T cd01746           2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR--GV---EGKILA   76 (235)
T ss_pred             EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc--ch---hhHHHH
Confidence            455543    345677887777764    344443  3321        245679999999997542  12   234577


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAVG   90 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~~   90 (215)
                      ++.+.+.++|+||||+|+|+|+.++|+
T Consensus        77 i~~~~~~~~PvlGIClG~Q~l~~~~g~  103 (235)
T cd01746          77 IKYARENNIPFLGICLGMQLAVIEFAR  103 (235)
T ss_pred             HHHHHHCCceEEEEEhHHHHHHHHHHH
Confidence            888888999999999999999999975

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.57  E-value=3.7e-15  Score=122.47  Aligned_cols=167  Identities=19%  Similarity=0.283  Sum_probs=91.8

Q ss_pred             HHHHHHHHCCCeEEEECC---CCC----CCCcCEEEEcCCCc---chH-----HH---HHhhCC--HHHHHHHHHHcCCc
Q 028010           14 EHIAALKRLGVKGVEIRK---PDQ----LQNVSSLIIPGGES---TTM-----AR---LAEYHN--LFPALREFVKMGKP   73 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~---~~~----l~~~d~lil~GG~~---~~~-----~~---l~~~~~--l~~~i~~~~~~~~P   73 (215)
                      .+.++...+|.-..++..   .++    ++..|+||++||.+   ..|     +.   ....++  -..+|++++++|+|
T Consensus        30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iP  109 (243)
T COG2071          30 DYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIP  109 (243)
T ss_pred             HHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCC
Confidence            356777778766555552   222    45789999999931   101     00   111122  24689999999999


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccc-cceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-C
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQEL-VGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-G  151 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~-lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-~  151 (215)
                      |||||.|+|+|..++|+......+. .|.++-+. .              ..+...-+.+..       .....+..+ +
T Consensus       110 ILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~-~--------------~~~~~~~H~V~i-------~~~s~La~i~g  167 (243)
T COG2071         110 ILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQ-P--------------NPVHIESHEVHI-------EPGSKLAKILG  167 (243)
T ss_pred             EEEEccchHHHHHHhcCeeehhhhcccccccccC-C--------------CCcccceeEEEe-------cCCccHHHhcC
Confidence            9999999999999998532111111 11111000 0              001111111111       123333444 3


Q ss_pred             CCeEEEEEeeC---CCCccccCCcceeeecccCCCCCceEEEEee---CCEEEEeeCCccCCCCc
Q 028010          152 PDVDVLADYPV---PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ---GNLLGTAFHPELTADTR  210 (215)
Q Consensus       152 ~~~~~~Hs~~~---~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~---~~v~g~QFHPE~s~~~~  210 (215)
                      +.-..+.|++.   ....+.. .+.|.++++       .+.|+..   .+++|||+|||...+..
T Consensus       168 ~~~~~VNS~HhQaIk~La~~L-~V~A~a~DG-------~VEAie~~~~~fvlGVQWHPE~~~~~~  224 (243)
T COG2071         168 ESEFMVNSFHHQAIKKLAPGL-VVEARAPDG-------TVEAVEVKNDAFVLGVQWHPEYLVDTN  224 (243)
T ss_pred             ccceeecchHHHHHHHhCCCc-EEEEECCCC-------cEEEEEecCCceEEEEecChhhhccCC
Confidence            22133444433   2333333 678888875       6677653   47999999999987665

>PLN02327 CTP synthase

Probab=99.53  E-value=1.6e-13  Score=125.20  Aligned_cols=95  Identities=18%  Similarity=0.252  Sum_probs=65.6

Q ss_pred             EEEEE----ecCCChHHHHHHHHHCCC----eE--EEECC-----C-------------CCCCCcCEEEEcCCCcchHHH
Q 028010            2 VVGVL----ALQGSFNEHIAALKRLGV----KG--VEIRK-----P-------------DQLQNVSSLIIPGGESTTMAR   53 (215)
Q Consensus         2 ~v~il----~~~G~~~s~~~~l~~~G~----~v--~~~~~-----~-------------~~l~~~d~lil~GG~~~~~~~   53 (215)
                      ||+++    .+..+|.|+.++|+.+|+    ++  ..++.     .             +.+.++|+|++|||+++.  .
T Consensus       299 ~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~--~  376 (557)
T PLN02327        299 RIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDR--G  376 (557)
T ss_pred             EEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCc--c
Confidence            45554    356789999999998763    33  33321     1             135689999999997542  1


Q ss_pred             HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEE
Q 028010           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVH  107 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~  107 (215)
                      .   .+....++.+.+.++|+||||+|||+++..++.      .-+|+-+...+
T Consensus       377 ~---~G~i~ai~~are~~iP~LGIClGmQl~viefaR------nvlG~~dAnS~  421 (557)
T PLN02327        377 V---EGKILAAKYARENKVPYLGICLGMQIAVIEFAR------SVLGLKDANST  421 (557)
T ss_pred             c---ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHH------hhcCCcCCCcc
Confidence            1   244567777778999999999999999999863      33555555444

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.50  E-value=7.8e-14  Score=124.29  Aligned_cols=83  Identities=22%  Similarity=0.388  Sum_probs=59.5

Q ss_pred             EEEEE----ecCCChHHHHHHHHHCCCe------EEEECCC-------CCCCC-cCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            2 VVGVL----ALQGSFNEHIAALKRLGVK------GVEIRKP-------DQLQN-VSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il----~~~G~~~s~~~~l~~~G~~------v~~~~~~-------~~l~~-~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      ||+++    .+.++|.|+.++|+..|+.      +..++..       +.+.. +|++++|||++.-  ..   .+....
T Consensus       290 ~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R--G~---eGkI~A  364 (533)
T COG0504         290 TIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR--GV---EGKIAA  364 (533)
T ss_pred             EEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC--ch---HHHHHH
Confidence            45653    3788999999999998752      3334321       12223 8999999998731  11   234677


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhc
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAV   89 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~   89 (215)
                      ++.+.++++|+||||+|||+..-.+-
T Consensus       365 i~yAREn~iP~lGIClGmQ~aviE~A  390 (533)
T COG0504         365 IRYARENNIPFLGICLGMQLAVIEFA  390 (533)
T ss_pred             HHHHHhcCCCEEEEchhHHHHHHHHH
Confidence            88888899999999999999877663

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=99.48  E-value=7.4e-13  Score=102.83  Aligned_cols=161  Identities=19%  Similarity=0.207  Sum_probs=99.2

Q ss_pred             EEEEecCCChH-HHHHHH-HHCCCeEEEECCCC----CC--CCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCc
Q 028010            3 VGVLALQGSFN-EHIAAL-KRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKP   73 (215)
Q Consensus         3 v~il~~~G~~~-s~~~~l-~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~P   73 (215)
                      |.+++..+++. .+...| -+.|+.+.+.++.+    ++  .+.+.|+|.-|+... ..-+     -.+.|+++ .-.+|
T Consensus        21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGI-----s~~~i~~f-~~~iP   94 (223)
T KOG0026|consen   21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGI-----SLQTVLEL-GPLVP   94 (223)
T ss_pred             EEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccc-----hHHHHHHh-CCCCc
Confidence            44555555544 456677 57789998887643    23  256787775544321 1111     13556554 35799


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~  153 (215)
                      +||||+|.|.+.+++|+.  -...+.+++.+++.+-.               +-+         .   .+--+|++++..
T Consensus        95 ~fGvCMGlQCi~e~fGGk--v~~a~~~i~HGK~S~i~---------------~D~---------~---~~~G~f~g~~q~  145 (223)
T KOG0026|consen   95 LFGVCMGLQCIGEAFGGK--IVRSPFGVMHGKSSMVH---------------YDE---------K---GEEGLFSGLSNP  145 (223)
T ss_pred             eeeeehhhhhhhhhhCcE--EeccCcceeeccccccc---------------cCC---------c---cccccccCCCCC
Confidence            999999999999999852  12334555555544311               101         0   123567888765


Q ss_pred             --eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC---CEEEEeeCCcc
Q 028010          154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPEL  205 (215)
Q Consensus       154 --~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~---~v~g~QFHPE~  205 (215)
                        +..+||.....  .|.++-.+.||++.+       .++++|+.   +|-|+|||||.
T Consensus       146 ~~V~RYHSLa~~~sSlP~d~L~VTawTEnG-------~iMgaRHkKY~~ieGVQfHPES  197 (223)
T KOG0026|consen  146 FIVGRYHSLVIEKDSFPSDELEVTAWTEDG-------LVMAARHRKYKHIQGVQFHPES  197 (223)
T ss_pred             eEEEeeeeeeeecccCCccceeeeEeccCc-------EEEeeeccccccccceeecchh
Confidence              45589986632  332222688999875       77887754   58899999995

>PRK00784 cobyric acid synthase; Provisional

Probab=99.48  E-value=3e-13  Score=123.88  Aligned_cols=106  Identities=26%  Similarity=0.392  Sum_probs=85.3

Q ss_pred             EEEEEecCCChH-HHHHHHHH-CCCeEEEECCCCCCCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            2 VVGVLALQGSFN-EHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~-~G~~v~~~~~~~~l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      ||+|..++..+. +..++|++ .|++++.+++.++++++|+||||||.+..  +.++ .+.++.+.|++++++|+|++||
T Consensus       253 ~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~-~~~~l~~~i~~~~~~g~pilg~  331 (488)
T PRK00784        253 RIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWL-RESGWDEAIRAHARRGGPVLGI  331 (488)
T ss_pred             EEEEEeCCCcCCccChHHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHH-HHcCHHHHHHHHHHcCCeEEEE
Confidence            789988665322 67789987 99999999998888899999999997643  3333 3467899999999999999999


Q ss_pred             ehHHHHHHHhhccCC-----CCCccccceeeeEEEe
Q 028010           78 CAGLIFLANKAVGQK-----LGGQELVGGLDCTVHR  108 (215)
Q Consensus        78 C~G~QlLa~~~~~~~-----~~~~~~lG~~~~~v~~  108 (215)
                      |.|+|+|++.+.+..     .+..+++|++|++++.
T Consensus       332 C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~  367 (488)
T PRK00784        332 CGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVF  367 (488)
T ss_pred             CHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEe
Confidence            999999999985321     1224899999998864

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.47  E-value=6.1e-13  Score=120.81  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=87.1

Q ss_pred             EEEEEec---CCChHHHHHHHHHCCCeEEEECC--CCCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~---~G~~~s~~~~l~~~G~~v~~~~~--~~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+|...   .-.|.+..++|++.|++++.++.  .+++.++|+||||||++.. ...+..+..+.+.|+++.++|+|++
T Consensus       247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~  326 (451)
T PRK01077        247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIY  326 (451)
T ss_pred             eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEE
Confidence            6788764   44577889999999999999986  3567899999999998753 2455556788899999999999999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~  108 (215)
                      |||.|+|+|++.+.+......+++|++|.++.-
T Consensus       327 aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~  359 (451)
T PRK01077        327 AECGGLMYLGESLEDADGERHPMVGLLPGEASM  359 (451)
T ss_pred             EEcHHHHHHHhhhcCCCCCeeecccccceeEEE
Confidence            999999999999975432346899999998754

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=99.46  E-value=6.6e-13  Score=120.48  Aligned_cols=106  Identities=23%  Similarity=0.387  Sum_probs=86.2

Q ss_pred             EEEEEec---CCChHHHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcCCCcchHH-HHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~---~G~~~s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~GG~~~~~~-~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+|...   .-.|.+..+.|++.|++++.+++.  ++++++|+|+||||+++.+. .+..+.++.+.|++++++|+|++
T Consensus       246 ~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~  325 (449)
T TIGR00379       246 RIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIY  325 (449)
T ss_pred             EEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEE
Confidence            6777663   334568889999999999999874  56789999999999876543 45545778999999999999999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~  108 (215)
                      |||.|+|+|++.+.+. .+..+++|++|+.++-
T Consensus       326 g~CgG~~~L~~~i~~~-~g~~~~~Gllp~~t~~  357 (449)
T TIGR00379       326 GECGGLMYLSQSLDNF-EGQIFMVGMLPTAATM  357 (449)
T ss_pred             EEcHHHHHHHhhhcCC-CCceeceeeeeeEEEE
Confidence            9999999999999652 2345999999998764

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=99.45  E-value=4.9e-13  Score=131.95  Aligned_cols=87  Identities=20%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             CEEEEEecCCChH--HHHHHHHHCCCeEEEEC--CC-------------CCCCCcCEEEEcCCCcc--hH-------HHH
Q 028010            1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP-------------DQLQNVSSLIIPGGEST--TM-------ARL   54 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~~-------------~~l~~~d~lil~GG~~~--~~-------~~l   54 (215)
                      +||+||.++|...  +...+|+++|+++..+.  +.             ..+.++|+|++|||++.  ..       ..+
T Consensus       978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857       978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence            5999999999766  56889999998866553  21             24688999999999752  11       123


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+.+.++++++.++++||||.|+|+|.+.
T Consensus      1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857      1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred             hhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence            333567888999999999999999999999986

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=99.40  E-value=1e-12  Score=130.51  Aligned_cols=87  Identities=21%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             CEEEEEecCCChH--HHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcc------h---HHHHHhhCCHHHH
Q 028010            1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGEST------T---MARLAEYHNLFPA   63 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~------~---~~~l~~~~~l~~~   63 (215)
                      +||+||.++|...  +...+|+.+|+++..+.-      ...++++++|++|||++.      .   ...+..+..+.+.
T Consensus      1038 pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~ 1117 (1307)
T PLN03206       1038 PKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117 (1307)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHH
Confidence            5999999999766  578999999988766542      235789999999999752      1   1233334567888


Q ss_pred             HHHHHH-cCCcEEEEehHHHHHHHh
Q 028010           64 LREFVK-MGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        64 i~~~~~-~~~PilGIC~G~QlLa~~   87 (215)
                      ++++++ .++++||||.|+|+|++.
T Consensus      1118 ~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1118 FQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             HHHHHhCCCceEEEEcHHHHHHHHc
Confidence            999995 599999999999999986

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=99.39  E-value=3.5e-12  Score=114.82  Aligned_cols=105  Identities=25%  Similarity=0.346  Sum_probs=84.5

Q ss_pred             EEEEEe---cCCChHHHHHHHHHCCCeEEEECC--CCCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLA---LQGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~---~~G~~~s~~~~l~~~G~~v~~~~~--~~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+|-.   |.--|.+..+.|+++ ++++.+++  .+.++++|+|+||||+++. ..++..+ ...+.|++++++|+|++
T Consensus       235 ~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~~~L~~n-~~~~~i~~~~~~G~pi~  312 (433)
T PRK13896        235 TVAVARDAAFCFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHADALADS-PALDELADRAADGLPVL  312 (433)
T ss_pred             eEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHHHHHHhC-CcHHHHHHHHHCCCcEE
Confidence            566643   555688999999999 99999887  4567789999999998754 3456553 44589999999999999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~  108 (215)
                      |||.|+|+|++.+.+......+++|++|+++.-
T Consensus       313 aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m  345 (433)
T PRK13896        313 GECGGLMALAESLTTTDGDTHEMAGVLPADVTM  345 (433)
T ss_pred             EEehHHHHhhccccCCCCCEecccceeeEEEEE
Confidence            999999999999965322357899999998864

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=99.36  E-value=3.5e-12  Score=100.28  Aligned_cols=76  Identities=20%  Similarity=0.357  Sum_probs=62.2

Q ss_pred             CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhc-----cCCCCCccccceeeeEE
Q 028010           33 DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-----GQKLGGQELVGGLDCTV  106 (215)
Q Consensus        33 ~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~-----~~~~~~~~~lG~~~~~v  106 (215)
                      +.+.++|+|+||||++.. ...+.++.++.+.|++++++|+||+|||.|+|+|++.+.     +......+++|++|..+
T Consensus         3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t   82 (158)
T PF07685_consen    3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT   82 (158)
T ss_pred             CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence            456789999999998753 234555678999999999999999999999999999997     32222488999999987


Q ss_pred             Ee
Q 028010          107 HR  108 (215)
Q Consensus       107 ~~  108 (215)
                      +.
T Consensus        83 ~~   84 (158)
T PF07685_consen   83 TM   84 (158)
T ss_pred             EE
Confidence            65

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=99.35  E-value=9.5e-12  Score=124.48  Aligned_cols=87  Identities=23%  Similarity=0.322  Sum_probs=66.7

Q ss_pred             CEEEEEecCCChH--HHHHHHHHCCCeEEEEC--C----CCCCCCcCEEEEcCCCcc--h----H---HHHHhhCCHHHH
Q 028010            1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--T----M---ARLAEYHNLFPA   63 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~----~~~l~~~d~lil~GG~~~--~----~---~~l~~~~~l~~~   63 (215)
                      +||+||.++|...  +...+|+.+|+++..+.  +    ...++++++|++|||++.  .    -   ..+..+..+.+.
T Consensus      1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~ 1115 (1290)
T PRK05297       1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1115 (1290)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHH
Confidence            4899999999766  57889999999876654  2    134789999999999752  1    1   112223466788


Q ss_pred             HHHHH-HcCCcEEEEehHHHHHHHh
Q 028010           64 LREFV-KMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        64 i~~~~-~~~~PilGIC~G~QlLa~~   87 (215)
                      +++++ +.++++||||.|+|+|.+.
T Consensus      1116 ~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297       1116 FEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred             HHHHHhCCCceEEEEcHHHHHHHHh
Confidence            88877 6799999999999999996

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=99.34  E-value=1.7e-11  Score=122.55  Aligned_cols=88  Identities=24%  Similarity=0.281  Sum_probs=67.7

Q ss_pred             CEEEEEecCCChH--HHHHHHHHCCCeEEEEC--C----CCCCCCcCEEEEcCCCcc--h----H---HHHHhhCCHHHH
Q 028010            1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--T----M---ARLAEYHNLFPA   63 (215)
Q Consensus         1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~----~~~l~~~d~lil~GG~~~--~----~---~~l~~~~~l~~~   63 (215)
                      +||+||.++|...  +...+|+.+|+++..+.  +    ...++++++|++|||++.  .    .   ..+..+..+.+.
T Consensus      1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735      1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence            4899999999766  57889999998876654  2    134789999999999752  1    1   123334567888


Q ss_pred             HHHHH-HcCCcEEEEehHHHHHHHhh
Q 028010           64 LREFV-KMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        64 i~~~~-~~~~PilGIC~G~QlLa~~~   88 (215)
                      +++++ +.++++||||.|+|+|+..+
T Consensus      1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~ 1161 (1310)
T TIGR01735      1136 FQAFFKRPDTFSLGVCNGCQMLSNLL 1161 (1310)
T ss_pred             HHHHHhCCCceEEEecHHHHHHHHHh
Confidence            99999 78999999999999999443

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=99.31  E-value=1.3e-11  Score=112.67  Aligned_cols=105  Identities=26%  Similarity=0.359  Sum_probs=79.1

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      ||+|..++..+. ...++|+.. -.+..+..++++.++|+|++|||.+..  +..+. +.++.+.|++++++|+|++|||
T Consensus       249 ~Iav~~~~~~~nf~~~~~L~~~-~~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~-~~~~~~~i~~~~~~G~pvlgiC  326 (475)
T TIGR00313       249 RIGVVRLPRISNFTDFEPLRYE-AFVKFLDLDDSLTGCDAVIIPGSKSTIADLYALK-QSGFAEEILDFAKEGGIVIGIC  326 (475)
T ss_pred             EEEEEcCCcccCccChHHHhhC-CCeEEeCCccccccCCEEEECCcchHHHHHHHHH-hcChHHHHHHHHHcCCcEEEEc
Confidence            788888665322 155677766 245556666778899999999998653  33443 4678999999999999999999


Q ss_pred             hHHHHHHHhhccCC-----CCCccccceeeeEEEe
Q 028010           79 AGLIFLANKAVGQK-----LGGQELVGGLDCTVHR  108 (215)
Q Consensus        79 ~G~QlLa~~~~~~~-----~~~~~~lG~~~~~v~~  108 (215)
                      .|||+|++.+.+..     .+..+++|++|++++.
T Consensus       327 gG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~  361 (475)
T TIGR00313       327 GGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYF  361 (475)
T ss_pred             HHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEE
Confidence            99999999885421     2356899999998764

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.29  E-value=9.3e-11  Score=110.97  Aligned_cols=82  Identities=21%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCCCCC--CCcCEEEEcCCCcc--hHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQL--QNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l--~~~d~lil~GG~~~--~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      ||.+++. |-....++.|..+|+++.++...-++  .+||+|++..|+++  ..+.+      .+-+++.++.++|++||
T Consensus       174 ~I~aiDc-G~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~------v~~vr~lL~~~~PvfGI  246 (1435)
T KOG0370|consen  174 RILAIDC-GLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLL------VQNVRELLESNVPVFGI  246 (1435)
T ss_pred             EEEEccc-CchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHH------HHHHHHHHhCCCCeEEE
Confidence            3444444 44556789999999999998755443  47999999998754  33333      45566666668999999


Q ss_pred             ehHHHHHHHhhcc
Q 028010           78 CAGLIFLANKAVG   90 (215)
Q Consensus        78 C~G~QlLa~~~~~   90 (215)
                      |+|+|+||.+.|.
T Consensus       247 ClGHQllA~AaGa  259 (1435)
T KOG0370|consen  247 CLGHQLLALAAGA  259 (1435)
T ss_pred             ehhhHHHHHhhCC
Confidence            9999999999974

>PHA03366 FGAM-synthase; Provisional

Probab=99.28  E-value=4.5e-11  Score=119.59  Aligned_cols=86  Identities=24%  Similarity=0.267  Sum_probs=67.0

Q ss_pred             EEEEEecCCChH--HHHHHHHHCCCeEEEEC--C---CCCCCCcCEEEEcCCCcc------h---HHHHHhhCCHHHHHH
Q 028010            2 VVGVLALQGSFN--EHIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGEST------T---MARLAEYHNLFPALR   65 (215)
Q Consensus         2 ~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~---~~~l~~~d~lil~GG~~~------~---~~~l~~~~~l~~~i~   65 (215)
                      ||+||.++|...  +...+|+++|+++..+.  +   ...++++++|+++||++.      .   ...+..+..+.+.++
T Consensus      1030 rVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~ 1109 (1304)
T PHA03366       1030 RVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALL 1109 (1304)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHH
Confidence            899999999766  57899999999876654  2   123889999999999752      1   123333456778899


Q ss_pred             HHHH-cCCcEEEEeh-HHHHHHHh
Q 028010           66 EFVK-MGKPVWGTCA-GLIFLANK   87 (215)
Q Consensus        66 ~~~~-~~~PilGIC~-G~QlLa~~   87 (215)
                      ++.+ .++++||||- |.|+|++.
T Consensus      1110 ~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366       1110 RFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred             HHHhCCCCeEEEeCcHHHHHHHHc
Confidence            9985 5999999998 99999986

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=99.26  E-value=5.3e-11  Score=105.53  Aligned_cols=106  Identities=22%  Similarity=0.395  Sum_probs=88.6

Q ss_pred             EEEEEe---cCCChHHHHHHHHHCCCeEEEECCCC--CCC-CcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLA---LQGSFNEHIAALKRLGVKGVEIRKPD--QLQ-NVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~---~~G~~~s~~~~l~~~G~~v~~~~~~~--~l~-~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      ||+|-.   |.--|.+..+.|+++|++++.+++.+  +++ ++|+|+|+||++.. .+.|..++.+++.|+++++.|+|+
T Consensus       247 rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~pi  326 (451)
T COG1797         247 RIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPI  326 (451)
T ss_pred             eEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCce
Confidence            677643   55678899999999999999998754  466 69999999999864 457777777899999999999999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEE
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVH  107 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~  107 (215)
                      +|.|.|+..|++.+.+......+++|++++.+.
T Consensus       327 yaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~  359 (451)
T COG1797         327 YAECGGLMYLGESLEDADGDTYEMVGVLPGSTR  359 (451)
T ss_pred             EEecccceeehhheeccCCceeeeeeeeccchh
Confidence            999999999999997654446789999988754

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.22  E-value=1.7e-11  Score=107.95  Aligned_cols=90  Identities=19%  Similarity=0.297  Sum_probs=60.7

Q ss_pred             cCCChHHHHHHHHHCCC------eEEEECC--C----------------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            8 LQGSFNEHIAALKRLGV------KGVEIRK--P----------------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         8 ~~G~~~s~~~~l~~~G~------~v~~~~~--~----------------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      +.++|.|+.++|+.+.+      ++..++.  .                +.+..+|++++|||++..  -.   .+....
T Consensus       310 l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--Gv---eG~i~A  384 (585)
T KOG2387|consen  310 LSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--GV---EGKILA  384 (585)
T ss_pred             chHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--ch---hHHHHH
Confidence            56789999999998753      3444432  1                124579999999998641  01   233455


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~  108 (215)
                      ++-+.++++|+||||+|||+-.-.+.      +.-||+-|...++
T Consensus       385 ak~ARen~iP~LGiCLGmQ~AvIEfa------RnvLg~~dAnStE  423 (585)
T KOG2387|consen  385 AKWARENKIPFLGICLGMQLAVIEFA------RNVLGLKDANSTE  423 (585)
T ss_pred             HHHHHhcCCCeEeeehhhhHHHHHHH------HHhhCCCCCCccc
Confidence            66666789999999999999776653      3445666555544

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=99.18  E-value=3.2e-10  Score=91.92  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             CCChHHHHHHHHHCCCeEEEEC--CCCC--CCCcCEEEEcCCCcch----HHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            9 QGSFNEHIAALKRLGVKGVEIR--KPDQ--LQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         9 ~G~~~s~~~~l~~~G~~v~~~~--~~~~--l~~~d~lil~GG~~~~----~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      .||...+..+.+.+|+.+.++.  ..+.  .+++|.+++.||.+..    ++.+   ....+.|+.+++.++|+|.||.|
T Consensus        20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~---~~k~~~l~~~i~~g~p~laiCgg   96 (250)
T COG3442          20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDL---LTKKEGLKDAIENGKPVLAICGG   96 (250)
T ss_pred             CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhh---ccccHHHHHHHhcCCcEEEEccc
Confidence            4555667788999998776643  3333  3579999999987542    2222   22357899999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEE
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVH  107 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~  107 (215)
                      .|+|++.+........++||++|....
T Consensus        97 ~QlLG~yY~~a~G~ri~GlGiLd~~T~  123 (250)
T COG3442          97 YQLLGQYYETASGTRIDGLGILDHYTE  123 (250)
T ss_pred             hhhccceeecCCCcEeecccceeeeec
Confidence            999999997655456899999987655

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=99.16  E-value=1e-10  Score=96.20  Aligned_cols=107  Identities=20%  Similarity=0.185  Sum_probs=79.7

Q ss_pred             EEEEEecCCC-----hHHHHHHHHHC-CCeEEEEC-----C-CCCCCCcCEEEEcCCCc-chHHHHHhhCCHHHHHHHHH
Q 028010            2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIR-----K-PDQLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFV   68 (215)
Q Consensus         2 ~v~il~~~G~-----~~s~~~~l~~~-G~~v~~~~-----~-~~~l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~~~~   68 (215)
                      ||+++-....     ..+..++++++ |++++.+.     . .+.+.++|+|++|||.. ..+..++. .++.+.|++++
T Consensus        33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~-~~l~~~l~~~~  111 (212)
T cd03146          33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWRE-HGLDAILKAAL  111 (212)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHH-cCHHHHHHHHH
Confidence            5677665332     22567899999 99988776     2 34567899999999853 45667765 58899999999


Q ss_pred             HcCCcEEEEehHHHHHHHhhcc------CCCCCccccceeeeEEEec
Q 028010           69 KMGKPVWGTCAGLIFLANKAVG------QKLGGQELVGGLDCTVHRN  109 (215)
Q Consensus        69 ~~~~PilGIC~G~QlLa~~~~~------~~~~~~~~lG~~~~~v~~~  109 (215)
                      ++|+|++|+|+|+|+++.....      ......++||++++.+..|
T Consensus       112 ~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~pH  158 (212)
T cd03146         112 ERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICPH  158 (212)
T ss_pred             HCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCccccCC
Confidence            9999999999999999995211      1112468999998877665

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=99.13  E-value=4.5e-10  Score=101.19  Aligned_cols=105  Identities=23%  Similarity=0.380  Sum_probs=83.7

Q ss_pred             EEEEEecCC--ChHHHHHHHHHC-CCeEEEECCCCCCCCcCEEEEcCCCcc--hHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            2 VVGVLALQG--SFNEHIAALKRL-GVKGVEIRKPDQLQNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         2 ~v~il~~~G--~~~s~~~~l~~~-G~~v~~~~~~~~l~~~d~lil~GG~~~--~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      +|+|+.++.  |+. -.+.|+.. ++++.+++..+++.++|.+||||+.++  .+.+++. .++.+.|.++++.+.+++|
T Consensus       253 ~Iav~~lp~isNFt-D~dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~-~g~d~~i~~~~~~~~~viG  330 (486)
T COG1492         253 RIAVIRLPRISNFT-DFDPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILRE-GGMDEKILEYARKGGDVIG  330 (486)
T ss_pred             EEEEecCCCccccc-cchhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHH-cCHHHHHHHHHhCCCCEEE
Confidence            678887755  343 34566655 899999999999999999999999764  3556665 6888999999999999999


Q ss_pred             EehHHHHHHHhhccCC-----CCCccccceeeeEEEe
Q 028010           77 TCAGLIFLANKAVGQK-----LGGQELVGGLDCTVHR  108 (215)
Q Consensus        77 IC~G~QlLa~~~~~~~-----~~~~~~lG~~~~~v~~  108 (215)
                      ||.|+|||++.+-+..     .+..++||++|.+..-
T Consensus       331 ICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~  367 (486)
T COG1492         331 ICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCF  367 (486)
T ss_pred             EcchHHhhhhhhcCcccccCcccccCCccceEEEEEe
Confidence            9999999999987631     2246799999988764

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=99.13  E-value=6.2e-10  Score=111.02  Aligned_cols=86  Identities=28%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             EEEEEecCCChH--HHHHHHHHCCCeEEEECC-----CCCCCCcCEEEEcCCCcc------h---HHHHHhhCCHHHHHH
Q 028010            2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRK-----PDQLQNVSSLIIPGGEST------T---MARLAEYHNLFPALR   65 (215)
Q Consensus         2 ~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~-----~~~l~~~d~lil~GG~~~------~---~~~l~~~~~l~~~i~   65 (215)
                      ||+||.++|...  +...||+++|+++..+.-     ...++++++|+++||++.      .   ...+..+..+.+.++
T Consensus       931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739       931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence            799999999766  578999999998776642     134678999999998642      1   123333456788899


Q ss_pred             HHHH-cCCcEEEEeh-HHHHHHHh
Q 028010           66 EFVK-MGKPVWGTCA-GLIFLANK   87 (215)
Q Consensus        66 ~~~~-~~~PilGIC~-G~QlLa~~   87 (215)
                      ++++ .++++||||- |.|+|++.
T Consensus      1011 ~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739      1011 TFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred             HHHhCCCceEEEeCcHHHHHHHHc
Confidence            9994 5999999997 99999986

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=3.1e-09  Score=95.75  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=85.9

Q ss_pred             EEEEEecCCChH-HHHHHHHHC-CCe-EEEECCC-------CC---CCCcCEEEEcCCCcchH--HHHHhhCCH-HHHHH
Q 028010            2 VVGVLALQGSFN-EHIAALKRL-GVK-GVEIRKP-------DQ---LQNVSSLIIPGGESTTM--ARLAEYHNL-FPALR   65 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~-G~~-v~~~~~~-------~~---l~~~d~lil~GG~~~~~--~~l~~~~~l-~~~i~   65 (215)
                      ++..++-.+.|. .+.+.|... |+. |.+++..       +.   ...+|+||+..|++..+  +..    +. .+++.
T Consensus        16 ~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~----gI~~rl~~   91 (767)
T KOG1224|consen   16 RTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADI----GICLRLLL   91 (767)
T ss_pred             eEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHH----HHHHHHHH
Confidence            455555556655 456677654 443 3334321       12   23499999855543322  221    11 12222


Q ss_pred             HHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCc
Q 028010           66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP  145 (215)
Q Consensus        66 ~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~p  145 (215)
                      .+  +++||||||+|+|.|+-+-|+              .|...             ..|..|-  +..  ++  ..+.-
T Consensus        92 ~~--~~iPilGICLGfQal~l~hGA--------------~v~~~-------------n~p~HGr--vs~--i~--~~~~~  136 (767)
T KOG1224|consen   92 EC--RDIPILGICLGFQALGLVHGA--------------HVVHA-------------NEPVHGR--VSG--IE--HDGNI  136 (767)
T ss_pred             hc--CCCceeeeehhhHhHhhhccc--------------ceecC-------------CCcccce--eee--EE--ecCcE
Confidence            22  479999999999999988763              22211             1222231  110  00  12445


Q ss_pred             eeeecC----CC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccC
Q 028010          146 AVLDVG----PD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELT  206 (215)
Q Consensus       146 l~~~~~----~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s  206 (215)
                      +|.+++    ..  ...+||..+.+.|-+. ..++++.|.  +|+. ..+.+.  +-+-||+|||||.-
T Consensus       137 ~f~gi~sg~~~~fK~~RYHSL~in~~pid~-l~il~t~~d--dng~-ilMsi~~~~fPhfG~qyHPES~  201 (767)
T KOG1224|consen  137 LFSGIPSGRNSDFKVVRYHSLIINSLPIDL-LPILWTIYD--DNGH-ILMSIMHSSFPHFGLQYHPESI  201 (767)
T ss_pred             EEccCCCCCcccceeEEeEEEEecCCchhh-hcceeEeec--CCce-EEEEeeccCCCccceeeChHHh
Confidence            666663    23  4567998887666554 334444443  1111 344444  34789999999963

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=98.90  E-value=1.5e-08  Score=84.49  Aligned_cols=108  Identities=19%  Similarity=0.304  Sum_probs=81.2

Q ss_pred             EEEEEecCC---ChH----HHHHHHHHCCCeEEEECCCCC----CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHc
Q 028010            2 VVGVLALQG---SFN----EHIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (215)
Q Consensus         2 ~v~il~~~G---~~~----s~~~~l~~~G~~v~~~~~~~~----l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~   70 (215)
                      ||+++-.-.   ++.    ...++++++|++++.++..++    +.++|+|+++||....+-..-...++.+.|++++++
T Consensus        33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~  112 (233)
T PRK05282         33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKN  112 (233)
T ss_pred             eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHC
Confidence            677766533   323    466789999999988887666    789999999999875443333347899999999999


Q ss_pred             CCcEEEEehHHHHHHHhhccCC------CCCccccceeeeEEEec
Q 028010           71 GKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVHRN  109 (215)
Q Consensus        71 ~~PilGIC~G~QlLa~~~~~~~------~~~~~~lG~~~~~v~~~  109 (215)
                      |+|++|+|+|+.+++..+....      ....++||+++..+..+
T Consensus       113 G~~~~G~SAGAii~~~~i~~~~~~~~~~~~~~~gLglv~~~i~pH  157 (233)
T PRK05282        113 GTPYIGWSAGANVAGPTIRTTNDMPIVDPPSFDALGLFPFQINPH  157 (233)
T ss_pred             CCEEEEECHHHHhhhccceecCCCCcccccCCCcccceeeeeccc
Confidence            9999999999999998765321      12256899998766654

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=98.84  E-value=1.9e-08  Score=79.00  Aligned_cols=84  Identities=27%  Similarity=0.411  Sum_probs=63.8

Q ss_pred             EEEEEecCCChH----HHHHHHHHCCCeEEEECCC------------------CCCC--CcCEEEEcCCCcchHHHHHhh
Q 028010            2 VVGVLALQGSFN----EHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAEY   57 (215)
Q Consensus         2 ~v~il~~~G~~~----s~~~~l~~~G~~v~~~~~~------------------~~l~--~~d~lil~GG~~~~~~~l~~~   57 (215)
                      ||+||.++|...    ...+.|++.|+++.++...                  ++++  ++|+|++|||...  ..+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~--~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP--EYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH--HHhccC
Confidence            689999988533    5678899999988776421                  1122  5899999998642  223233


Q ss_pred             CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           58 HNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+.++|+++.++++|+.+||.|.++|+++
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGPQLLISA  108 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence            457899999999999999999999999986

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=98.83  E-value=1.1e-08  Score=84.36  Aligned_cols=74  Identities=22%  Similarity=0.391  Sum_probs=48.8

Q ss_pred             HHHHHHHHCCCeEEEECC--CCC-----CCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcC--CcEEEEehHHH
Q 028010           14 EHIAALKRLGVKGVEIRK--PDQ-----LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG--KPVWGTCAGLI   82 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~--~~~-----l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~--~PilGIC~G~Q   82 (215)
                      |+++.++..|++|+.+..  +++     ++..++||++||-.  ..+-.+.+  .......+..++|  .|+.|||+|+.
T Consensus        81 SYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvk--kifnk~le~nDaGehFPvyg~CLGFE  158 (340)
T KOG1559|consen   81 SYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVK--KIFNKVLERNDAGEHFPVYGICLGFE  158 (340)
T ss_pred             HHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHH--HHHHHHHhccCCccccchhhhhhhHH
Confidence            678888999999887653  332     35689999999943  22223321  1122222223333  89999999999


Q ss_pred             HHHHhhc
Q 028010           83 FLANKAV   89 (215)
Q Consensus        83 lLa~~~~   89 (215)
                      +|...+.
T Consensus       159 ~lsmiIS  165 (340)
T KOG1559|consen  159 LLSMIIS  165 (340)
T ss_pred             HHHHHHh
Confidence            9998875

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=98.75  E-value=4.4e-07  Score=80.12  Aligned_cols=106  Identities=20%  Similarity=0.297  Sum_probs=69.7

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHC---CCeEEEECC----CCC-CCCcCEEEEcCCCcchHH-HHHhhCCHHHHHHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRL---GVKGVEIRK----PDQ-LQNVSSLIIPGGESTTMA-RLAEYHNLFPALREF   67 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~---G~~v~~~~~----~~~-l~~~d~lil~GG~~~~~~-~l~~~~~l~~~i~~~   67 (215)
                      |+|.|..=.|.    ....+..|++.   .+.|..+..    .+. ..+++.||+|||.+..+. .|.  ..-.+.||++
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~--~~g~~~Ir~f   78 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLN--GEGNRRIRQF   78 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhC--hHHHHHHHHH
Confidence            78888887773    33455666653   356666652    122 357999999999765433 232  1235789999


Q ss_pred             HHcCCcEEEEehHHHHHHHhhccC--CC----CCccccceeeeEEEe
Q 028010           68 VKMGKPVWGTCAGLIFLANKAVGQ--KL----GGQELVGGLDCTVHR  108 (215)
Q Consensus        68 ~~~~~PilGIC~G~QlLa~~~~~~--~~----~~~~~lG~~~~~v~~  108 (215)
                      +++|.-.||||+|..+-+....-.  .+    .+...|++++|....
T Consensus        79 V~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG  125 (367)
T PF09825_consen   79 VENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARG  125 (367)
T ss_pred             HHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccC
Confidence            999999999999999887764211  10    123458888876554

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=98.75  E-value=6.7e-08  Score=79.81  Aligned_cols=87  Identities=24%  Similarity=0.372  Sum_probs=64.2

Q ss_pred             EEEEEec-----CCC----hHHHHHHHHHCCCeEEEECCC---------------------------------C-----C
Q 028010            2 VVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP---------------------------------D-----Q   34 (215)
Q Consensus         2 ~v~il~~-----~G~----~~s~~~~l~~~G~~v~~~~~~---------------------------------~-----~   34 (215)
                      ||+|+.-     +|.    +.....+|++.|++++++.+.                                 .     +
T Consensus         3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~   82 (217)
T PRK11780          3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEAD   82 (217)
T ss_pred             EEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCC
Confidence            8998875     563    334678999999988775420                                 0     1


Q ss_pred             CCCcCEEEEcCCCcch--H-------HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           35 LQNVSSLIIPGGESTT--M-------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        35 l~~~d~lil~GG~~~~--~-------~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      .++||+|++|||....  +       +.++.+..+.++++++.++|||+.+||.|.++|+.++
T Consensus        83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~  145 (217)
T PRK11780         83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL  145 (217)
T ss_pred             hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence            2469999999996421  1       1223345678999999999999999999999999876

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=98.74  E-value=4.9e-08  Score=76.58  Aligned_cols=84  Identities=26%  Similarity=0.445  Sum_probs=63.3

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCC-C-------------------CC--CCcCEEEEcCCCcchHHHHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-D-------------------QL--QNVSSLIIPGGESTTMARLA   55 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~-~-------------------~l--~~~d~lil~GG~~~~~~~l~   55 (215)
                      ||+||.++|-    +....+.|+..|++++++... .                   +.  .++|+|++|||...  ..+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~--~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP--DKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh--hhhc
Confidence            6899999884    334578899999988776422 1                   11  25799999999632  2233


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+.++|+++.++++++.+||.|.++|+++
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a  110 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISA  110 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence            33457899999999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.72  E-value=1.3e-07  Score=72.44  Aligned_cols=86  Identities=24%  Similarity=0.308  Sum_probs=65.7

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      +||+||.++|.    +....+.|+..|+++.++...                  ++.  .++|+|++|||.... ..+..
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~-~~~~~   80 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA-FALAP   80 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH-HHHcc
Confidence            58999999994    335678899999998876421                  122  258999999986532 12223


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.++++|+.+||.|..+|+++
T Consensus        81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            3567899999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.71  E-value=8.4e-08  Score=76.60  Aligned_cols=84  Identities=24%  Similarity=0.357  Sum_probs=62.4

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCC----------------------------------CCC--CCcCEE
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQL--QNVSSL   41 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~----------------------------------~~l--~~~d~l   41 (215)
                      ||+|+.++|.    +....+.|++.|++++++...                                  +++  .++|+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            6899998884    334678899999888776421                                  011  257999


Q ss_pred             EEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        42 il~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ++|||....  .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus        81 iv~GG~~~~--~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          81 VIPGGRAPE--YLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             EEcCCCChh--hhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            999996421  22222456789999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=98.66  E-value=8.8e-08  Score=71.11  Aligned_cols=79  Identities=22%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             EEEEecCCChH----HHHHHHHHCCCeEEEECCC----CCC-CCcCEEEEcCC-CcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            3 VGVLALQGSFN----EHIAALKRLGVKGVEIRKP----DQL-QNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         3 v~il~~~G~~~----s~~~~l~~~G~~v~~~~~~----~~l-~~~d~lil~GG-~~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |+|.+=.|.-.    .+.+.|+..- ++..++..    ..+ .++|.||+||| +...|..|.. .+ .+.|++++++|+
T Consensus         2 v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~~~ad~lVlPGGa~~~~~~~L~~-~g-~~~i~~~v~~g~   78 (114)
T cd03144           2 VLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADELAVGPWESKTALLVVPGGADLPYCRALNG-KG-NRRIRNFVRNGG   78 (114)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHHHhcCchhhCCCEEEECCCChHHHHHHHHh-hC-cHHHHHHHHCCC
Confidence            56666555322    3344444322 44444321    222 48999999997 4567777866 45 889999999999


Q ss_pred             cEEEEehHHHHH
Q 028010           73 PVWGTCAGLIFL   84 (215)
Q Consensus        73 PilGIC~G~QlL   84 (215)
                      |+||||+|+-+.
T Consensus        79 p~LGIClGAy~a   90 (114)
T cd03144          79 NYLGICAGAYLA   90 (114)
T ss_pred             cEEEEecCccce
Confidence            999999998875

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.65  E-value=2e-07  Score=65.90  Aligned_cols=81  Identities=31%  Similarity=0.476  Sum_probs=60.4

Q ss_pred             EEEEecCCCh----HHHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010            3 VGVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (215)
Q Consensus         3 v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~   71 (215)
                      |+|+..++..    ....+.|+..++++.++....       ...++|+|++|||........ .+..+.+.+++..+++
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~   79 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAG   79 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcC
Confidence            4566666654    467889999999999887543       256899999999865432111 1134578888988889


Q ss_pred             CcEEEEehHHHHH
Q 028010           72 KPVWGTCAGLIFL   84 (215)
Q Consensus        72 ~PilGIC~G~QlL   84 (215)
                      +|++|+|.|+|++
T Consensus        80 ~~i~~~c~g~~~l   92 (115)
T cd01653          80 KPILGICLGAQLL   92 (115)
T ss_pred             CEEEEECchhHhH
Confidence            9999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=98.60  E-value=3e-07  Score=73.82  Aligned_cols=87  Identities=25%  Similarity=0.396  Sum_probs=64.9

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC---------------------CCC--CCcCEEEEcCCCcchHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP---------------------DQL--QNVSSLIIPGGESTTMAR   53 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~---------------------~~l--~~~d~lil~GG~~~~~~~   53 (215)
                      |||+|+..+|.    +....+.|++.|.++.++...                     +++  ++||+|++|||....+..
T Consensus         3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~   82 (188)
T COG0693           3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYL   82 (188)
T ss_pred             ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhc
Confidence            48999999884    445678999999876554211                     123  389999999994332222


Q ss_pred             HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      ..+ ..+.++++++.+.++|+.+||.|.++|+.+.
T Consensus        83 ~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag  116 (188)
T COG0693          83 RPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAAG  116 (188)
T ss_pred             cCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence            221 4678999999999999999999999999873

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=98.52  E-value=6e-07  Score=69.95  Aligned_cols=84  Identities=26%  Similarity=0.414  Sum_probs=62.7

Q ss_pred             EEEEecCCC----hHHHHHHHHHCCCeEEEECCC-------------------CCC--CCcCEEEEcCCCcchHHHHHhh
Q 028010            3 VGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAEY   57 (215)
Q Consensus         3 v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~~l~~~   57 (215)
                      |+||.++|.    +....+.|+..|+++.++...                   ++.  .++|.|++|||.... ..+..+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~-~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA-QNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH-HHHHhC
Confidence            578888884    335678899999887765321                   122  479999999986322 223333


Q ss_pred             CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           58 HNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+.++|+++.++++++.+||.|..+|+++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~a  109 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKA  109 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence            567899999999999999999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=98.50  E-value=3.5e-07  Score=73.01  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=35.3

Q ss_pred             CCCcCEEEEcCCCcchHH-----HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010           35 LQNVSSLIIPGGESTTMA-----RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (215)
Q Consensus        35 l~~~d~lil~GG~~~~~~-----~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~   90 (215)
                      ..++||+|++|++-..++     .......+.++.+   ++.+|+|++|.|+|+....+++
T Consensus        60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~---~~v~stl~iCWgaqaal~~~yG  117 (175)
T cd03131          60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAK---THVTSTLFSCWAAMAALYYFYG  117 (175)
T ss_pred             ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHcC
Confidence            357999999998643211     1111122344444   3689999999999999888864

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.48  E-value=5.3e-07  Score=60.98  Aligned_cols=80  Identities=33%  Similarity=0.467  Sum_probs=57.0

Q ss_pred             EEEecCCCh----HHHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            4 GVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         4 ~il~~~G~~----~s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      +++...+..    ....+.+++.++++.++....       ...++|+||+|||........ ++....+++++..++++
T Consensus         2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (92)
T cd03128           2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGK   80 (92)
T ss_pred             EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCC
Confidence            455554433    467889999999888876432       256899999999865432211 12345678888888899


Q ss_pred             cEEEEehHHHHH
Q 028010           73 PVWGTCAGLIFL   84 (215)
Q Consensus        73 PilGIC~G~QlL   84 (215)
                      |++|+|.|+|++
T Consensus        81 ~i~~~~~g~~~~   92 (92)
T cd03128          81 PVLGICLGAQLL   92 (92)
T ss_pred             EEEEEecccccC
Confidence            999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>TIGR01383 not_thiJ DJ-1 family protein

Probab=98.48  E-value=7.2e-07  Score=70.78  Aligned_cols=85  Identities=25%  Similarity=0.343  Sum_probs=62.1

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEE--ECC----C---------------CC--CCCcCEEEEcCCCcchHHHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVE--IRK----P---------------DQ--LQNVSSLIIPGGESTTMARL   54 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~--~~~----~---------------~~--l~~~d~lil~GG~~~~~~~l   54 (215)
                      ||+||.++|.    +....+.|+..|.++++  +..    +               ++  ..++|.|++|||.... ..+
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~-~~~   79 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGA-ENL   79 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHH-HHH
Confidence            6999999994    33567888888876653  321    1               01  3469999999985321 222


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+.++|+++.++++++.+||.|..+|+++
T Consensus        80 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        80 RNSKLLLNILKKQESKGKLVAAICAAPAVLLAA  112 (179)
T ss_pred             hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence            223457899999999999999999999999997

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=98.42  E-value=9.4e-07  Score=75.74  Aligned_cols=168  Identities=18%  Similarity=0.165  Sum_probs=79.3

Q ss_pred             CEEEEEecCCChHHHHHHH-HHCC-----CeEEEECCC-------------------CCC--CCcCEEEEcCCCcchHH-
Q 028010            1 MVVGVLALQGSFNEHIAAL-KRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMA-   52 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l-~~~G-----~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~-   52 (215)
                      +||+||++.-+-......| +-++     ++++.+...                   +++  ..+||+||+|.+-..++ 
T Consensus        35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F  114 (298)
T PF04204_consen   35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF  114 (298)
T ss_dssp             EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred             eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence            3899999988877655433 3333     344444321                   123  47999999998543221 


Q ss_pred             -HHHhhCCHHHHHHHHH-HcCCcEEEEehHHHH-HHHhhccCCC-CCccccceeeeEEEeccCCCcceeeeeecccCccc
Q 028010           53 -RLAEYHNLFPALREFV-KMGKPVWGTCAGLIF-LANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA  128 (215)
Q Consensus        53 -~l~~~~~l~~~i~~~~-~~~~PilGIC~G~Ql-La~~~~~~~~-~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~G  128 (215)
                       ...-=..+.+.+ ++. +.-.+.|.||.|+|. |-...|-... -..+..|+.+.++.                     
T Consensus       115 e~V~YW~El~~i~-dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~---------------------  172 (298)
T PF04204_consen  115 EEVDYWDELTEIF-DWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVL---------------------  172 (298)
T ss_dssp             GGSTTHHHHHHHH-HHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES---------------------
T ss_pred             ccCCcHHHHHHHH-HHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeecc---------------------
Confidence             110001122222 333 357899999999999 4444442100 00112222221111                     


Q ss_pred             CCCCCCcceeeeeeeCceeeecCCCeEEEEEeeCCCC------ccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeC
Q 028010          129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSN------KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFH  202 (215)
Q Consensus       129 w~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~~------~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFH  202 (215)
                                  ..++||++|+...|+.=||-+....      .+.. .++|.|+..     -..+..-..++-+=+|-|
T Consensus       173 ------------~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L-~vLa~s~~~-----G~~l~~~~d~r~vfi~GH  234 (298)
T PF04204_consen  173 ------------DPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGL-EVLAESEEA-----GVFLVASKDGRQVFITGH  234 (298)
T ss_dssp             -------------SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTE-EEEEEETTT-----EEEEEEECCCTEEEE-S-
T ss_pred             ------------CCCChhhcCCCccccCCcccccCCCHHHHhcCCCc-EEEeccCCc-----ceEEEEcCCCCEEEEeCC
Confidence                        0267899999888888888544221      1112 578888754     133444456788889999


Q ss_pred             CccCCC
Q 028010          203 PELTAD  208 (215)
Q Consensus       203 PE~s~~  208 (215)
                      ||.+.+
T Consensus       235 ~EYd~~  240 (298)
T PF04204_consen  235 PEYDAD  240 (298)
T ss_dssp             TT--TT
T ss_pred             CccChh
Confidence            998765

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=98.42  E-value=2.7e-06  Score=68.73  Aligned_cols=85  Identities=21%  Similarity=0.256  Sum_probs=61.6

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECC------C---------------CCC--CCcCEEEEcCCCcchHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK------P---------------DQL--QNVSSLIIPGGESTTMAR   53 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~------~---------------~~l--~~~d~lil~GG~~~~~~~   53 (215)
                      |||.||.++|.    +....+.|++.|+++.++..      +               +++  +++|.|++|||.... ..
T Consensus         3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~-~~   81 (196)
T PRK11574          3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA-EC   81 (196)
T ss_pred             ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh-hh
Confidence            49999999884    44577889999987766421      0               112  368999999986422 12


Q ss_pred             HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 028010           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN   86 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~   86 (215)
                      +..+..+.++|+++.++++++.+||.|..+|..
T Consensus        82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~  114 (196)
T PRK11574         82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV  114 (196)
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence            222234789999999999999999999987554

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=98.37  E-value=3.7e-06  Score=68.85  Aligned_cols=107  Identities=22%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             EEEEEecCC-----ChHHHHHHHHHCCCeEEEECCC---------CCCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHH
Q 028010            2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKP---------DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALRE   66 (215)
Q Consensus         2 ~v~il~~~G-----~~~s~~~~l~~~G~~v~~~~~~---------~~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~   66 (215)
                      ||+++....     ......++++++|++++.+...         +.+.++|+|+++||... .+..+.. .++.+.|++
T Consensus        31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~~~~~i~~  109 (210)
T cd03129          31 RVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRE-TPLLDAILK  109 (210)
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHh-CChHHHHHH
Confidence            677776543     2335678999999987654321         23578999999999764 3445543 457777778


Q ss_pred             HHHcCCcEEEEehHHHHHHHh-hc-cCCCC-----CccccceeeeEEEec
Q 028010           67 FVKMGKPVWGTCAGLIFLANK-AV-GQKLG-----GQELVGGLDCTVHRN  109 (215)
Q Consensus        67 ~~~~~~PilGIC~G~QlLa~~-~~-~~~~~-----~~~~lG~~~~~v~~~  109 (215)
                      .+++|+|+.|+|+|+.+++.. .. .....     ...+||+++..+..|
T Consensus       110 ~~~~G~v~~G~SAGA~~~~~~~~~~~~~~~~~~~~~~~GLgl~~~~i~pH  159 (210)
T cd03129         110 RVARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPPMAPGLGLLPGIIDPH  159 (210)
T ss_pred             HHHcCCeEEEcCHHHHHhhhccccCCCCccccccccccCCCCcceeECCC
Confidence            777999999999999999995 22 22111     356899997777665

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=98.33  E-value=2.1e-06  Score=71.60  Aligned_cols=51  Identities=24%  Similarity=0.330  Sum_probs=42.4

Q ss_pred             CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ++||+|++|||.... ..+..+..+.++|+++.+++||+.+||.|.++|+.+
T Consensus        93 ~dYDav~iPGG~g~~-~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147          93 DDYGIFFVAGGHGTL-FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             hhCcEEEECCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence            479999999996532 344455567899999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.33  E-value=2.1e-06  Score=68.59  Aligned_cols=83  Identities=24%  Similarity=0.344  Sum_probs=60.5

Q ss_pred             EEEEecCCC----hHHHHHHHHHCC-------CeEEEECCC------------------CCCCCcCEEEEcCCCcchHHH
Q 028010            3 VGVLALQGS----FNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR   53 (215)
Q Consensus         3 v~il~~~G~----~~s~~~~l~~~G-------~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~   53 (215)
                      |+||.++|.    +....+.|+.++       +++.++...                  ++..++|.|++|||....  .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~--~   78 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD--G   78 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc--c
Confidence            578888884    335677787766       666665421                  134579999999985432  1


Q ss_pred             HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..++.+.++|+++.++++++.+||.|.++|+++
T Consensus        79 ~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          79 RPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            2233457899999999999999999999999987

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=98.32  E-value=3e-06  Score=69.78  Aligned_cols=76  Identities=24%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             HHHHHHHHCCCeEEEECCC---------------------------------CC-----CCCcCEEEEcCCCcc--hHHH
Q 028010           14 EHIAALKRLGVKGVEIRKP---------------------------------DQ-----LQNVSSLIIPGGEST--TMAR   53 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~---------------------------------~~-----l~~~d~lil~GG~~~--~~~~   53 (215)
                      ...+.|++.|++++++...                                 ..     +++||+|++|||.+.  .+..
T Consensus        21 ~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D  100 (213)
T cd03133          21 LTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSD  100 (213)
T ss_pred             HHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhh
Confidence            4578999999998875430                                 01     236999999999642  1211


Q ss_pred             HH-------hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhc
Q 028010           54 LA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (215)
Q Consensus        54 l~-------~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~   89 (215)
                      +.       .+..+.++++++.++|||+.+||.|.++|+.+.+
T Consensus       101 ~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~  143 (213)
T cd03133         101 FAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG  143 (213)
T ss_pred             hcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence            11       2345788999999999999999999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.31  E-value=4.8e-06  Score=67.06  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=41.6

Q ss_pred             CCCcCEEEEcCCCcchHH-HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           35 LQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        35 l~~~d~lil~GG~~~~~~-~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+++|.|+||||...... .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus        67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            457999999997543211 23333567899999999999999999999999986

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.29  E-value=1.9e-06  Score=68.12  Aligned_cols=82  Identities=28%  Similarity=0.375  Sum_probs=58.2

Q ss_pred             EEEEecCCC----hHHHHHHHHHC-CCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHhh
Q 028010            3 VGVLALQGS----FNEHIAALKRL-GVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAEY   57 (215)
Q Consensus         3 v~il~~~G~----~~s~~~~l~~~-G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~~   57 (215)
                      |+|+.++|-    +......|++. ++++.++...                  +++  .++|.|++|||......   .+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~---~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNP---EA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccC---Cc
Confidence            467777773    33456777775 6777665321                  123  46899999999642211   22


Q ss_pred             CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           58 HNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +.+.++|+++.++++++.+||.|.++|+++
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a  107 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGATLALARA  107 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence            456889999999999999999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=98.23  E-value=6.4e-06  Score=78.60  Aligned_cols=86  Identities=24%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             CEEEEEecCCCh----HHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGSF----NEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      +||+||..+|..    ..+.++|+..|+.+.++...                  ++.  ..+|+|+||||.... ..+..
T Consensus       598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~-~~L~~  676 (752)
T PRK11249        598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANI-ADLAD  676 (752)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhH-HHHhh
Confidence            589999999953    35678999999988876431                  111  258999999986432 23433


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.+.+|+|.+||.|.++|+.+
T Consensus       677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        677 NGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             CHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence            3457899999999999999999999999986

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.21  E-value=5e-06  Score=66.45  Aligned_cols=82  Identities=22%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             EEEEecCCChH----HHHHHHHHCC-------CeEEEECCC------------------CCCCCcCEEEEcCCCcchHHH
Q 028010            3 VGVLALQGSFN----EHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR   53 (215)
Q Consensus         3 v~il~~~G~~~----s~~~~l~~~G-------~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~   53 (215)
                      |+|+.++|...    ...+.|+..+       ++++++...                  .+..++|.|++|||....   
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~~~~---   77 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGAR---   77 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCCeeecCCCcEEeCCccccccCCCCEEEEeCCCCcc---
Confidence            67888888543    2345554432       455554311                  133579999999985432   


Q ss_pred             HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+..+.++|+++.++++.+.++|.|..+|+++
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          78 RAVTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            2233457899999999999999999999999986

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>PRK04155 chaperone protein HchA; Provisional

Probab=98.18  E-value=1e-05  Score=69.50  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=43.3

Q ss_pred             CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        35 l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .++||+|+||||... +..+..+..+.++|+.+.+++|||.+||.|.++|..+
T Consensus       145 ~~dYDaV~iPGG~g~-~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        145 DSDYAAVFIPGGHGA-LIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             cccccEEEECCCCch-HHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            357999999999654 3456666678899999999999999999999988774

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.17  E-value=5.5e-06  Score=65.87  Aligned_cols=83  Identities=23%  Similarity=0.363  Sum_probs=61.4

Q ss_pred             EEEEecCCC----hHHHHHHHHHCC-----CeEEEECCC------------------CCCCCcCEEEEcCCCcchHHHHH
Q 028010            3 VGVLALQGS----FNEHIAALKRLG-----VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLA   55 (215)
Q Consensus         3 v~il~~~G~----~~s~~~~l~~~G-----~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~l~   55 (215)
                      |+||.++|.    +....+.|+..+     +++.++...                  ++...+|.|++|||....  .+.
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~--~~~   78 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTR--ALV   78 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchh--hhc
Confidence            578888873    445678888887     887776421                  123479999999985422  233


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+.++|+++.++++++.++|.|..+|+++
T Consensus        79 ~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a  110 (183)
T cd03139          79 NDPALLDFIRRQAARAKYVTSVCTGALLLAAA  110 (183)
T ss_pred             cCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence            33457899999999999999999999999886

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=98.10  E-value=1.2e-05  Score=67.09  Aligned_cols=51  Identities=22%  Similarity=0.366  Sum_probs=42.2

Q ss_pred             CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ++||+|++|||... +..+..+..+.+.++++.++|||+..||.|.+.|..+
T Consensus        95 ~dYDav~iPGG~g~-~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGA-LIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCC-hhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            47999999999653 3345555667899999999999999999999988775

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>TIGR01001 metA homoserine O-succinyltransferase

Probab=98.06  E-value=1.6e-05  Score=67.98  Aligned_cols=166  Identities=14%  Similarity=0.030  Sum_probs=88.6

Q ss_pred             CEEEEEecCCChHHHHH----HHHHCCC--eEEEECCC-------------------CCC--CCcCEEEEcCCCcchHH-
Q 028010            1 MVVGVLALQGSFNEHIA----ALKRLGV--KGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMA-   52 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~----~l~~~G~--~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~-   52 (215)
                      +||+||++.-+-.....    .|.....  +++.+...                   +++  ..+||+||+|.+-..++ 
T Consensus        36 L~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~F  115 (300)
T TIGR01001        36 LEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPF  115 (300)
T ss_pred             eeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCc
Confidence            48999999777665433    3333333  34443211                   122  46999999998532211 


Q ss_pred             -HH-HhhCCHHHHHHHHHH-cCCcEEEEehHHHHHHHhhcc-CCC-CCccccceeeeEEEeccCCCcceeeeeecccCcc
Q 028010           53 -RL-AEYHNLFPALREFVK-MGKPVWGTCAGLIFLANKAVG-QKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPAL  127 (215)
Q Consensus        53 -~l-~~~~~l~~~i~~~~~-~~~PilGIC~G~QlLa~~~~~-~~~-~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~  127 (215)
                       .. -| ..+.+ |-++.+ .-...|.||.|+|.-....-+ ... -..+..|+++                      + 
T Consensus       116 eeV~YW-~El~~-I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~----------------------h-  170 (300)
T TIGR01001       116 EDVAYW-EELTE-IMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYK----------------------H-  170 (300)
T ss_pred             ccCCcH-HHHHH-HHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEeec----------------------C-
Confidence             00 01 11122 233333 567899999999985555432 100 0011112111                      1 


Q ss_pred             cCCCCCCcceeeeeeeCceeeecCCCeEEEEEeeCCCC------ccccCCcceeeecccCCCCCceEEEEeeCCEEEEee
Q 028010          128 ASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSN------KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAF  201 (215)
Q Consensus       128 Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~~------~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QF  201 (215)
                         .+.        ..+||++|+...|+.=||-+....      .++. .++|.|+..     -..+.+-..++-+=++-
T Consensus       171 ---~~~--------~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L-~vla~s~e~-----G~~l~~s~d~r~vfi~G  233 (300)
T TIGR01001       171 ---DIA--------PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDL-EILAESDEA-----GVYLAANKDERNIFVTG  233 (300)
T ss_pred             ---ccC--------CCCccccCCCCccccCCCCCCCCCHHHHhcCCCC-eEEecCCCc-----ceEEEEcCCCCEEEEcC
Confidence               011        267899999888888888644322      1122 467777643     12333334446666999


Q ss_pred             CCccCCC
Q 028010          202 HPELTAD  208 (215)
Q Consensus       202 HPE~s~~  208 (215)
                      |||-+.+
T Consensus       234 H~EYd~~  240 (300)
T TIGR01001       234 HPEYDAY  240 (300)
T ss_pred             CCccChh
Confidence            9998764

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=97.97  E-value=5e-06  Score=64.22  Aligned_cols=51  Identities=33%  Similarity=0.647  Sum_probs=39.9

Q ss_pred             CCcCEEEEcCCCcchHHHHH-hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           36 QNVSSLIIPGGESTTMARLA-EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        36 ~~~d~lil~GG~~~~~~~l~-~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+||+||+|||.... ..+. .+..+.++++++.+++||+.+||.|..+|+.+
T Consensus        36 ~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   36 SDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             GGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             hhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            469999999997633 3444 22467899999999999999999999999987

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=97.93  E-value=3.9e-05  Score=66.72  Aligned_cols=83  Identities=23%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             EEEEEecCCC----hHHHHHHHHHC----C---CeEEEECC------------------CCCCCCcCEEEEcCCCcchHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRL----G---VKGVEIRK------------------PDQLQNVSSLIIPGGESTTMA   52 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~----G---~~v~~~~~------------------~~~l~~~d~lil~GG~~~~~~   52 (215)
                      +|+|+.++|.    +....+.|+..    +   ++++++..                  .++.+++|.||+|||......
T Consensus        11 ~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg~~~~~~   90 (322)
T PRK09393         11 LVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGWRGPDAP   90 (322)
T ss_pred             EEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCCCccccc
Confidence            8999999994    22345555322    1   24444321                  123567999999998542211


Q ss_pred             HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        53 ~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                         .+..+.++|++..++++++.+||.|..+|+++
T Consensus        91 ---~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         91 ---VPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             ---CCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence               22457899999999999999999999999987

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=97.93  E-value=2.8e-05  Score=64.31  Aligned_cols=52  Identities=33%  Similarity=0.496  Sum_probs=41.0

Q ss_pred             CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      +++|+|+||||.... ..+..+..+.++|+++.++++++.+||.|..+|+.+-
T Consensus        89 ~~~dal~ipGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag  140 (221)
T cd03141          89 SDYDAIFIPGGHGPM-FDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK  140 (221)
T ss_pred             hHceEEEECCCcccc-cccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence            368999999986432 1232334578999999999999999999999999863

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=3.7e-05  Score=59.98  Aligned_cols=95  Identities=21%  Similarity=0.331  Sum_probs=65.2

Q ss_pred             HHHHHHHHCCCeEEEECCCC--------CCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHH
Q 028010           14 EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL   84 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~--------~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlL   84 (215)
                      ...++|+++|++++.++..+        .+.++|+|++.||... .+..++. .++.+.|++++++|+++.|+-+|+.++
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~-t~l~~~i~~~~~~G~vi~G~SAGA~i~   82 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKE-TGLDEAIREAYRKGGVIIGTSAGAMIL   82 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHH-TTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred             HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHh-CCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence            46789999999988876543        2457999999999764 3555654 789999999999999999999999988


Q ss_pred             HHhhccCC--C----CCccccceeeeEEEec
Q 028010           85 ANKAVGQK--L----GGQELVGGLDCTVHRN  109 (215)
Q Consensus        85 a~~~~~~~--~----~~~~~lG~~~~~v~~~  109 (215)
                      +..+....  +    ...++||+++..+..|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~gLgl~~~~i~pH  113 (154)
T PF03575_consen   83 GPSIETDSDSDDVELTNYDGLGLLPFVIIPH  113 (154)
T ss_dssp             SSBSCCGTTCCGCCECESB---SSSSEEETS
T ss_pred             cCceeecCcCCcccCCCCCcCCCCCCEeECC
Confidence            76653321  0    1135888888777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.00062  Score=55.65  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=64.0

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCC---CeEEEECCC----C-CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLG---VKGVEIRKP----D-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFV   68 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G---~~v~~~~~~----~-~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~   68 (215)
                      |+|.|..-.|.    +...++.|+..-   +++..++..    + ..+....||+|||.+..+-+.-. .--.+.|..++
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~EpW~~~T~lLV~pGGaDlpY~~~l~-g~g~a~i~~yv   79 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEPWEETTLLLVFPGGADLPYVQVLQ-GLGTARIKNYV   79 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeheeecCcchhceEEEEecCCCCchHHHHhc-chhhhhHHHHH
Confidence            78888877773    223345555443   244444321    2 23456789999997754322211 11246789999


Q ss_pred             HcCCcEEEEehHHHHHHHhhcc--CC---CCCccccceeeeEEEec
Q 028010           69 KMGKPVWGTCAGLIFLANKAVG--QK---LGGQELVGGLDCTVHRN  109 (215)
Q Consensus        69 ~~~~PilGIC~G~QlLa~~~~~--~~---~~~~~~lG~~~~~v~~~  109 (215)
                      ++|.-.||||+|.-.=+...+-  +.   -.+...|++++|++...
T Consensus        80 k~GG~fLGiCAG~YFg~~~veF~~p~~~~vvgkRdL~fFpGT~~GP  125 (253)
T COG4285          80 KEGGNFLGICAGGYFGSAYVEFAEPTGIEVVGKRDLGFFPGTARGP  125 (253)
T ss_pred             hcCCeEEEEeccccccceEEEEecCCCceeeecccccccCCccCCC
Confidence            9999999999997654433321  10   11245688888877643

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=97.72  E-value=5.7e-05  Score=59.26  Aligned_cols=52  Identities=25%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        34 ~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..++|.|++|||..  ......+..+.++|++..++++++.+||.|..+|+++
T Consensus        58 ~~~~~D~lvvpg~~~--~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   58 DAPDFDILVVPGGPG--FDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             CCSCCSEEEEE-STT--HHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             hcccCCEEEeCCCCC--chhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            456799999999976  2222222456788988888999999999999999998

...

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=97.65  E-value=0.00043  Score=66.48  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             EEEEEecCCCh--HHHHHHHHHCCCeEEE---ECCC---CCCCCcCEEEEcCCCcch------HHHH---HhhCCHHHHH
Q 028010            2 VVGVLALQGSF--NEHIAALKRLGVKGVE---IRKP---DQLQNVSSLIIPGGESTT------MARL---AEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~~~G~~--~s~~~~l~~~G~~v~~---~~~~---~~l~~~d~lil~GG~~~~------~~~l---~~~~~l~~~i   64 (215)
                      ||+||.-+|..  .+...+|..+|++..-   .+..   ..+++|-+|+.+||++.+      ..|-   .-+++++...
T Consensus      1060 kVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF 1139 (1320)
T KOG1907|consen 1060 KVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQF 1139 (1320)
T ss_pred             ceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHH
Confidence            89999999964  4678899999986543   3322   357889999999997632      1121   1123333333


Q ss_pred             HHHH-HcCCcEEEEehHHHHHHHh
Q 028010           65 REFV-KMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        65 ~~~~-~~~~PilGIC~G~QlLa~~   87 (215)
                      .++. +.+.--||||.|.|+|+..
T Consensus      1140 ~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1140 EAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred             HHHhcCCCceeeecccHhHHHHHh
Confidence            3333 3567799999999999985

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00019  Score=58.65  Aligned_cols=74  Identities=26%  Similarity=0.326  Sum_probs=58.1

Q ss_pred             HHHHHHHCCCeEEEECCC----CC----CCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHH
Q 028010           15 HIAALKRLGVKGVEIRKP----DQ----LQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA   85 (215)
Q Consensus        15 ~~~~l~~~G~~v~~~~~~----~~----l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa   85 (215)
                      ..++|+++|+.++-++..    ++    +.+.|+|++.||..-. +..+ ++.++++.|++.+++|+|++|+.+|+-+-+
T Consensus        54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~l-ke~gld~iIr~~vk~G~~YiG~SAGA~ia~  132 (224)
T COG3340          54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQEL-KETGLDDIIRERVKAGTPYIGWSAGANIAG  132 (224)
T ss_pred             HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHH-HHhCcHHHHHHHHHcCCceEEeccCceeec
Confidence            568999999988776532    22    4569999999997643 3344 347999999999999999999999998877


Q ss_pred             Hhhc
Q 028010           86 NKAV   89 (215)
Q Consensus        86 ~~~~   89 (215)
                      ..+.
T Consensus       133 p~I~  136 (224)
T COG3340         133 PTIE  136 (224)
T ss_pred             Ccee
Confidence            7654

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=97.48  E-value=0.00051  Score=56.62  Aligned_cols=69  Identities=22%  Similarity=0.333  Sum_probs=50.0

Q ss_pred             HHHHHHHCCCeEEEECCCC-------------------C--CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCc
Q 028010           15 HIAALKRLGVKGVEIRKPD-------------------Q--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (215)
Q Consensus        15 ~~~~l~~~G~~v~~~~~~~-------------------~--l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~P   73 (215)
                      ..+.|++.|++++++....                   |  -+.||.+|||||.... ..|.....+.+.++++.+.|+.
T Consensus        24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~-e~L~~~~~v~~lvK~q~~~gkL  102 (247)
T KOG2764|consen   24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGA-ETLSECEKVVDLVKEQAESGKL  102 (247)
T ss_pred             eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhh-hhhhhcHHHHHHHHHHHhcCCe
Confidence            3688999999998875320                   1  1479999999994322 2333334567889999999999


Q ss_pred             EEEEehHHHHH
Q 028010           74 VWGTCAGLIFL   84 (215)
Q Consensus        74 ilGIC~G~QlL   84 (215)
                      +..||.|.-++
T Consensus       103 IaaICaap~~a  113 (247)
T KOG2764|consen  103 IAAICAAPLTA  113 (247)
T ss_pred             EEEeecchHHH
Confidence            99999997433

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=97.17  E-value=0.0018  Score=53.43  Aligned_cols=86  Identities=21%  Similarity=0.319  Sum_probs=63.0

Q ss_pred             EEEEEecCCC-----hHHHHHHHHHCCCe-EEEECCC-----------CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHH
Q 028010            2 VVGVLALQGS-----FNEHIAALKRLGVK-GVEIRKP-----------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il~~~G~-----~~s~~~~l~~~G~~-v~~~~~~-----------~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~   63 (215)
                      ||+++...+.     ...+.++++++|++ +..+...           +.+.++|+|++.||.... +..+.. .++.+.
T Consensus        31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~l~~~  109 (217)
T cd03145          31 RIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGG-TPLLDA  109 (217)
T ss_pred             cEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcC-ChHHHH
Confidence            6777776441     23467788999985 4444321           125689999999997643 344543 678899


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      |++.+++|+|+.|+-+|+.+++...
T Consensus       110 l~~~~~~G~v~~G~SAGA~i~~~~~  134 (217)
T cd03145         110 LRKVYRGGVVIGGTSAGAAVMSDTM  134 (217)
T ss_pred             HHHHHHcCCEEEEccHHHHhhhhcc
Confidence            9999999999999999999998864

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>TIGR02069 cyanophycinase cyanophycinase

Probab=97.17  E-value=0.0017  Score=54.76  Aligned_cols=105  Identities=21%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             EEEEEecCC-Ch----HHHHHHHHHCCCe-EEEECC--C---------CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHH
Q 028010            2 VVGVLALQG-SF----NEHIAALKRLGVK-GVEIRK--P---------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il~~~G-~~----~s~~~~l~~~G~~-v~~~~~--~---------~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~   63 (215)
                      ||+|+-.-. ..    ....++|+++|++ +.++..  .         +.+.++|+|++.||.... .+.+. ..++.+.
T Consensus        30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~-~t~l~~~  108 (250)
T TIGR02069        30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLG-DTPLLDR  108 (250)
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHc-CCcHHHH
Confidence            678876533 22    2456788999984 554432  1         125689999999997643 34453 4688899


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhccC-----CC--C---CccccceeeeEEE
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAVGQ-----KL--G---GQELVGGLDCTVH  107 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~~~-----~~--~---~~~~lG~~~~~v~  107 (215)
                      |++++++|+|+.|+-+|+.+++...-..     .+  .   ..++||+++..+.
T Consensus       109 l~~~~~~G~vi~G~SAGA~i~~~~~~~~g~~~~~p~~~~~~~~~GLgll~~~vi  162 (250)
T TIGR02069       109 LRKRVHEGIILGGTSAGAAVMSDTMIVGGDSEESPRKETVDMAPGLGLLPNVLI  162 (250)
T ss_pred             HHHHHHcCCeEEEccHHHHhcccceEecCCCcCCccccceecccCccccCCcee
Confidence            9999999999999999999998765211     01  1   1257888887754

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=97.07  E-value=0.002  Score=56.30  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=37.2

Q ss_pred             CCCcCEEEEcCCCc-chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           35 LQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        35 l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ...+|.+++.||.. ......   +.+.++|++..+.|..+.|||.|.-+|+++
T Consensus        74 ~~~~~~v~v~~g~~~~~~~~~---~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          74 APPIDILPVCGGLGPERPVNA---PALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             cCcceEEEEecCCCcccccch---HHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            34588888866633 211111   235789999999999999999999999997

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.58  E-value=0.018  Score=45.22  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             CCcCEEEEcCCCcch--HHHHH-------hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010           36 QNVSSLIIPGGESTT--MARLA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (215)
Q Consensus        36 ~~~d~lil~GG~~~~--~~~l~-------~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~   90 (215)
                      +.+|+||+|||++.+  ..++.       -+.++..+.+.+.++|||+--||....++.+.+|.
T Consensus        84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~  147 (217)
T COG3155          84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF  147 (217)
T ss_pred             HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC
Confidence            468999999997532  11111       12456788899999999999999999999999975

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.09  E-value=0.13  Score=44.36  Aligned_cols=71  Identities=18%  Similarity=0.271  Sum_probs=48.6

Q ss_pred             CEEEEEecCCC------hHHHHHHHHHCCCeEEEECC-------------------C-CCCC-CcCEEEEcCCCcchHHH
Q 028010            1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------P-DQLQ-NVSSLIIPGGESTTMAR   53 (215)
Q Consensus         1 m~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~-------------------~-~~l~-~~d~lil~GG~~~~~~~   53 (215)
                      |||+|+...+.      ...+.++|++.|+++.+...                   . +++. .+|.+|.-||-++.+  
T Consensus         1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L--   78 (292)
T PRK01911          1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFL--   78 (292)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHH--
Confidence            89999987664      22456778889998776431                   0 1222 589999999977643  


Q ss_pred             HHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           54 LAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                              ...+.+...++|+|||=.|.
T Consensus        79 --------~aa~~~~~~~~PilGIN~G~   98 (292)
T PRK01911         79 --------RTATYVGNSNIPILGINTGR   98 (292)
T ss_pred             --------HHHHHhcCCCCCEEEEecCC
Confidence                    22334444689999999885

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=94.44  E-value=0.11  Score=36.04  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=33.9

Q ss_pred             CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC
Q 028010            9 QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG   46 (215)
Q Consensus         9 ~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG   46 (215)
                      ...+..+.++|++.|++++..+...++..+|++|++|-
T Consensus         7 E~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~   44 (80)
T PF03698_consen    7 EEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ   44 (80)
T ss_pred             cCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence            45667889999999999999998888999999999994

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.32  E-value=0.26  Score=42.23  Aligned_cols=70  Identities=26%  Similarity=0.277  Sum_probs=48.2

Q ss_pred             CEEEEEecCCC------hHHHHHHHHHCCCeEEEECC-----C-------CCC--CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010            1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P-------DQL--QNVSSLIIPGGESTTMARLAEYHNL   60 (215)
Q Consensus         1 m~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~-----~-------~~l--~~~d~lil~GG~~~~~~~l~~~~~l   60 (215)
                      |||+|+...+.      ...+.++|++.|+++.+...     .       ..+  .++|.+|.-||-++..         
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL---------   71 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTIL---------   71 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHH---------
Confidence            89999988775      22456778899998877521     0       011  2589999999976543         


Q ss_pred             HHHHHHHHHcCCcEEEEehHH
Q 028010           61 FPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        61 ~~~i~~~~~~~~PilGIC~G~   81 (215)
                       +.++ ....++|++||=.|.
T Consensus        72 -~a~~-~~~~~~pi~gIn~G~   90 (277)
T PRK03708         72 -RIEH-KTKKDIPILGINMGT   90 (277)
T ss_pred             -HHHH-hcCCCCeEEEEeCCC
Confidence             2233 334589999999886

>PRK03094 hypothetical protein; Provisional

Probab=93.70  E-value=0.19  Score=34.80  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC
Q 028010            9 QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG   46 (215)
Q Consensus         9 ~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG   46 (215)
                      .-++..+.++|++.|++|+-++...+...+|++|++|-
T Consensus         7 E~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~   44 (80)
T PRK03094          7 EQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ   44 (80)
T ss_pred             ecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence            34566788999999999999988777889999999994

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.28  E-value=0.51  Score=41.04  Aligned_cols=71  Identities=21%  Similarity=0.306  Sum_probs=47.1

Q ss_pred             CEEEEEecCCCh------HHHHHHHHHCCCeEEEECCC-----------------------CCC-CCcCEEEEcCCCcch
Q 028010            1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTT   50 (215)
Q Consensus         1 m~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~-----------------------~~l-~~~d~lil~GG~~~~   50 (215)
                      +||+|+...+.-      ..+.++|++.|+++.+....                       .++ .++|.+|.-||-++.
T Consensus         2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTl   81 (305)
T PRK02649          2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTV   81 (305)
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHHH
Confidence            269999876642      24566788899988664320                       112 258999999997754


Q ss_pred             HHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           51 MARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        51 ~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      +          ...+.+...++|+|||=.|.
T Consensus        82 L----------~aar~~~~~~iPilGIN~G~  102 (305)
T PRK02649         82 L----------SAARQLAPCGIPLLTINTGH  102 (305)
T ss_pred             H----------HHHHHhcCCCCcEEEEeCCC
Confidence            3          23344445689999998773

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=92.99  E-value=0.15  Score=42.94  Aligned_cols=60  Identities=15%  Similarity=0.035  Sum_probs=36.8

Q ss_pred             eCceeeecCCCeEEEEEeeCCCCc------cccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          143 RAPAVLDVGPDVDVLADYPVPSNK------VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       143 ~~pl~~~~~~~~~~~Hs~~~~~~~------~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      .++++.|....|+.=||-+.....      ++. .+|++|+..     -....+-+.++.+=+--|||.+.+
T Consensus       176 ~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~L-eIL~es~e~-----G~~l~a~k~~r~ifv~gH~EYD~~  241 (307)
T COG1897         176 HSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDL-EILAESKEA-----GVYLLASKDGRNIFVTGHPEYDAT  241 (307)
T ss_pred             cchhhccCCccccCcccccccCCHHHHhhCCCc-eeeeccccc-----ceEEEecCCCCeEEEeCCcchhhh
Confidence            567788887788888885443221      122 567777754     133444455666666679998654

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.09  E-value=0.9  Score=39.14  Aligned_cols=70  Identities=23%  Similarity=0.226  Sum_probs=46.7

Q ss_pred             EEEEEecCCCh-----HHHHHHHHHCCCeEEEECCC-----------CCC-CCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010            2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRKP-----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~~~G~~-----~s~~~~l~~~G~~v~~~~~~-----------~~l-~~~d~lil~GG~~~~~~~l~~~~~l~~~i   64 (215)
                      ||+|+...+..     ..+.++|++.|+++.+-...           +++ .++|.+|.-||-++.+          ...
T Consensus        12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L----------~aa   81 (287)
T PRK14077         12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLI----------SLC   81 (287)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHH----------HHH
Confidence            69998776631     13456788889887764321           222 3589999999976543          233


Q ss_pred             HHHHHcCCcEEEEehHH
Q 028010           65 REFVKMGKPVWGTCAGL   81 (215)
Q Consensus        65 ~~~~~~~~PilGIC~G~   81 (215)
                      +.+...++|+|||=.|.
T Consensus        82 ~~~~~~~~PilGIN~G~   98 (287)
T PRK14077         82 RKAAEYDKFVLGIHAGH   98 (287)
T ss_pred             HHhcCCCCcEEEEeCCC
Confidence            44445689999999886

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.96  E-value=1.2  Score=38.45  Aligned_cols=70  Identities=20%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC-------------------CCCC-CcCEEEEcCCCcchHHHHH
Q 028010            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-------------------DQLQ-NVSSLIIPGGESTTMARLA   55 (215)
Q Consensus         2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~-------------------~~l~-~~d~lil~GG~~~~~~~l~   55 (215)
                      ||+|+...+.      ...+.++|++.|+++.+....                   .++. .+|.+|.-||-++.+.   
T Consensus         7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~---   83 (296)
T PRK04539          7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLS---   83 (296)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHHH---
Confidence            6999877664      224567788899987764210                   1222 5899999999776432   


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                             ..+.+...++|++||=.|.
T Consensus        84 -------aa~~~~~~~~PilGIN~G~  102 (296)
T PRK04539         84 -------VAREIAPRAVPIIGINQGH  102 (296)
T ss_pred             -------HHHHhcccCCCEEEEecCC
Confidence                   2333444689999999885

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.82  E-value=1.1  Score=38.63  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=46.9

Q ss_pred             EEEEEecCCCh------HHHHHHHHHCCCeEEEECCC--------------CCC-CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010            2 VVGVLALQGSF------NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL   60 (215)
Q Consensus         2 ~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~--------------~~l-~~~d~lil~GG~~~~~~~l~~~~~l   60 (215)
                      +|+|+...+.-      ..+.++|++.|+++.+....              +++ .++|.+|.-||-++...        
T Consensus         7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~--------   78 (292)
T PRK03378          7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLG--------   78 (292)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHH--------
Confidence            68998876642      24567788899987764320              122 25899999999776432        


Q ss_pred             HHHHHHHHHcCCcEEEEehHH
Q 028010           61 FPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        61 ~~~i~~~~~~~~PilGIC~G~   81 (215)
                        ..+.+...++|++||=.|.
T Consensus        79 --aa~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         79 --AARVLARYDIKVIGINRGN   97 (292)
T ss_pred             --HHHHhcCCCCeEEEEECCC
Confidence              2333434579999999887

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.67  E-value=1.1  Score=38.90  Aligned_cols=70  Identities=19%  Similarity=0.189  Sum_probs=46.9

Q ss_pred             EEEEEecCCCh------HHHHHHHHHCCCeEEEECCC-----------------------CCC-CCcCEEEEcCCCcchH
Q 028010            2 VVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM   51 (215)
Q Consensus         2 ~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~-----------------------~~l-~~~d~lil~GG~~~~~   51 (215)
                      ||+|+...+.-      ..+.++|++.|+++.+....                       +.+ .++|.+|.-||-++.+
T Consensus         7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L   86 (306)
T PRK03372          7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL   86 (306)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence            69998876642      24567788899987764310                       112 3579999999977653


Q ss_pred             HHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      .          ..+.+...++|+|||=.|.
T Consensus        87 ~----------aar~~~~~~~PilGIN~G~  106 (306)
T PRK03372         87 R----------AAELARAADVPVLGVNLGH  106 (306)
T ss_pred             H----------HHHHhccCCCcEEEEecCC
Confidence            2          2334445789999998874

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=91.45  E-value=1.1  Score=38.65  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=47.1

Q ss_pred             EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC--------------CCC-CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL   60 (215)
Q Consensus         2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~--------------~~l-~~~d~lil~GG~~~~~~~l~~~~~l   60 (215)
                      +|+|+...+.      ...+.++|++.|+++.+....              +++ ..+|.+|.-||-++..         
T Consensus         7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l---------   77 (291)
T PRK02155          7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML---------   77 (291)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH---------
Confidence            5888877664      235677888899987664310              122 2589999999976553         


Q ss_pred             HHHHHHHHHcCCcEEEEehHH
Q 028010           61 FPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        61 ~~~i~~~~~~~~PilGIC~G~   81 (215)
                       +.++.+...++|+|||=.|.
T Consensus        78 -~~~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         78 -GIGRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             -HHHHHhcCCCCCEEEEcCCC
Confidence             23344445689999998886

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.43  E-value=0.26  Score=37.33  Aligned_cols=44  Identities=16%  Similarity=0.373  Sum_probs=25.7

Q ss_pred             CCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH--cCCcEEEEeh
Q 028010           31 KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGKPVWGTCA   79 (215)
Q Consensus        31 ~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~--~~~PilGIC~   79 (215)
                      ..+++.++|.+|+.||....  .....   .+.+++.++  .++|+.|+|+
T Consensus        79 e~e~~n~aDvvVLlGGLaMP--~~gv~---~d~~kel~ee~~~kkliGvCf  124 (154)
T COG4090          79 EREELNSADVVVLLGGLAMP--KIGVT---PDDAKELLEELGNKKLIGVCF  124 (154)
T ss_pred             CccccccccEEEEEcccccC--cCCCC---HHHHHHHHHhcCCCceEEeeH
Confidence            34567789999999985421  11100   122223332  4678999997

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=91.39  E-value=0.88  Score=34.93  Aligned_cols=56  Identities=20%  Similarity=0.244  Sum_probs=43.0

Q ss_pred             HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010           14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      ...++|.++|+.+.++....++.+|+.||+|.-.... +      ...+.|++++++|.-++.
T Consensus        30 ~~~~~l~~~gi~~d~v~~~~~l~~y~~vi~P~~~~~~-~------~~~~~l~~~v~~GG~li~   85 (154)
T cd03143          30 ALYRALRELGIPVDVVPPDADLSGYKLVVLPDLYLLS-D------ATAAALRAYVENGGTLVA   85 (154)
T ss_pred             HHHHHHHHCCCCEEEECCCCCcccCCEEEECchhcCC-H------HHHHHHHHHHHCCCEEEE
Confidence            5678999999999999988888999999999854321 1      225778899998765444

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.17  E-value=1  Score=38.33  Aligned_cols=63  Identities=22%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             CEEEEEecCCChH------HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH--cCC
Q 028010            1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGK   72 (215)
Q Consensus         1 m~v~il~~~G~~~------s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~--~~~   72 (215)
                      |||+|+.. ..-.      .+.+.|++.|+++.       ..++|.+|.-||-++.+.          .++.+..  .++
T Consensus         1 M~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~~-------~~~~Dlvi~iGGDGT~L~----------a~~~~~~~~~~i   62 (265)
T PRK04885          1 MKVAIISN-GDPKSKRVASKLKKYLKDFGFILD-------EKNPDIVISVGGDGTLLS----------AFHRYENQLDKV   62 (265)
T ss_pred             CEEEEEeC-CCHHHHHHHHHHHHHHHHcCCccC-------CcCCCEEEEECCcHHHHH----------HHHHhcccCCCC
Confidence            89999966 3311      24556777888731       246899999999776432          3334433  589


Q ss_pred             cEEEEehHH
Q 028010           73 PVWGTCAGL   81 (215)
Q Consensus        73 PilGIC~G~   81 (215)
                      |++||=.|.
T Consensus        63 PilGIN~G~   71 (265)
T PRK04885         63 RFVGVHTGH   71 (265)
T ss_pred             eEEEEeCCC
Confidence            999998875

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=90.73  E-value=1.4  Score=37.17  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=45.6

Q ss_pred             CEEEEEecCCChH---HHHHHHHHCCCeEEEECCCC-CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         1 m~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~~-~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      ||++|..-+....   .+.+.|.+.|.++....... ...++|.+|.-||-++.+..          ++.+   ++|++|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L~a----------~~~~---~~Pilg   67 (256)
T PRK14075          1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVLKA----------AKKV---GTPLVG   67 (256)
T ss_pred             CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHHHH----------HHHc---CCCEEE
Confidence            8999996555333   35667778888766543322 23578999999997654322          2222   899999


Q ss_pred             EehHH
Q 028010           77 TCAGL   81 (215)
Q Consensus        77 IC~G~   81 (215)
                      |=.|.
T Consensus        68 in~G~   72 (256)
T PRK14075         68 FKAGR   72 (256)
T ss_pred             EeCCC
Confidence            98875

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=90.65  E-value=0.63  Score=37.85  Aligned_cols=57  Identities=23%  Similarity=0.289  Sum_probs=31.8

Q ss_pred             HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010           14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      .+.++|+++|+.+.+++..+++++|..||+|.-.-.. +      ...+.|++++++|..++..
T Consensus        34 ~~y~al~~~gi~vDvv~~~~dL~~Ykllv~P~~~~l~-~------~~~~~L~~yV~~GG~li~~   90 (207)
T PF08532_consen   34 GWYRALRELGIPVDVVSPDDDLSGYKLLVLPSLYILS-P------EFAERLRAYVENGGTLILT   90 (207)
T ss_dssp             HHHHHHHTTT--EEEE-TTS--TT-SEEEES--SC---H------HH---HHHHHT-SS-EEE-
T ss_pred             HHHHHHHHcCCceEEecCcCCcccCcEEEEeeEEEEC-h------HHHHHHHHHHHCCCEEEEE
Confidence            4567899999999999988899999999999864321 1      1245678888887665533

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=90.54  E-value=0.56  Score=38.28  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             HHHHHH-HCCCeEEEECCCC-----CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           15 HIAALK-RLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        15 ~~~~l~-~~G~~v~~~~~~~-----~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      +.+.|+ ..|+++++.++++     .|+++|.||+.......+..     ...+.|++++++|++++|+..++
T Consensus        24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-----~~~~al~~~v~~Ggglv~lH~~~   91 (217)
T PF06283_consen   24 LAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-----EQRAALRDYVENGGGLVGLHGAA   91 (217)
T ss_dssp             HHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-----HHHHHHHHHHHTT-EEEEEGGGG
T ss_pred             HHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-----HHHHHHHHHHHcCCCEEEEcccc
Confidence            345566 5688898877643     56899999987644322211     22577889999999999999443

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=90.31  E-value=1.5  Score=34.53  Aligned_cols=78  Identities=13%  Similarity=0.123  Sum_probs=52.5

Q ss_pred             CEEEEEec--CCChHH----HHHHHHHCCCeEEEECCC--C--CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH-
Q 028010            1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP--D--QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK-   69 (215)
Q Consensus         1 m~v~il~~--~G~~~s----~~~~l~~~G~~v~~~~~~--~--~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~-   69 (215)
                      ||+.|+--  .|+=..    ++..|++.|.++.+.+..  .  ++.+||.+||.-+...  ....  +.+.+++++..+ 
T Consensus         1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~--~~~~~Fv~k~~e~   76 (175)
T COG4635           1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFH--EAVQSFVKKHAEA   76 (175)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhH--HHHHHHHHHHHHH
Confidence            78888764  555333    455688899999887643  2  6789999999866322  1221  234566666665 


Q ss_pred             -cCCcEEEEehHHH
Q 028010           70 -MGKPVWGTCAGLI   82 (215)
Q Consensus        70 -~~~PilGIC~G~Q   82 (215)
                       +.+|...+|.+.-
T Consensus        77 L~~kP~A~f~vnl~   90 (175)
T COG4635          77 LSTKPSAFFSVNLT   90 (175)
T ss_pred             HhcCCceEEEeehh
Confidence             5899999998743

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=90.21  E-value=1.5  Score=41.33  Aligned_cols=71  Identities=18%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             CEEEEEecCCCh------HHHHHHHHHCCCeEEEECC-----C----------CCCCCcCEEEEcCCCcchHHHHHhhCC
Q 028010            1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRK-----P----------DQLQNVSSLIIPGGESTTMARLAEYHN   59 (215)
Q Consensus         1 m~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~-----~----------~~l~~~d~lil~GG~~~~~~~l~~~~~   59 (215)
                      |||+|+...+.-      ..+.++|++.|+++.+...     .          .++.++|.+|.-||-++.+        
T Consensus       291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L--------  362 (569)
T PRK14076        291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVL--------  362 (569)
T ss_pred             cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHH--------
Confidence            689998876642      2356678888988766421     0          1234689999999977643        


Q ss_pred             HHHHHHHHHHcCCcEEEEehHH
Q 028010           60 LFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        60 l~~~i~~~~~~~~PilGIC~G~   81 (215)
                        ...+.+...++|+|||=.|.
T Consensus       363 --~aa~~~~~~~~PilGin~G~  382 (569)
T PRK14076        363 --RASKLVNGEEIPIICINMGT  382 (569)
T ss_pred             --HHHHHhcCCCCCEEEEcCCC
Confidence              22334445689999998875

>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=89.97  E-value=0.28  Score=41.20  Aligned_cols=93  Identities=20%  Similarity=0.288  Sum_probs=63.6

Q ss_pred             HHHHHHCCCe-EEEE--CCCC---------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHH
Q 028010           16 IAALKRLGVK-GVEI--RKPD---------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF   83 (215)
Q Consensus        16 ~~~l~~~G~~-v~~~--~~~~---------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~Ql   83 (215)
                      .+.++..|++ +.++  ++.+         .+.++++|+++||-...+-..-++..+.+.|++..+.|.-+-|..+|+.+
T Consensus        73 ~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAav  152 (293)
T COG4242          73 IRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAV  152 (293)
T ss_pred             hhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhh
Confidence            3578888874 4443  3332         24679999999996532222223467889999999999999999999999


Q ss_pred             HHHhhccC---C--CC-----CccccceeeeEEEe
Q 028010           84 LANKAVGQ---K--LG-----GQELVGGLDCTVHR  108 (215)
Q Consensus        84 La~~~~~~---~--~~-----~~~~lG~~~~~v~~  108 (215)
                      |..-.-..   .  +.     .-.+||++++.+..
T Consensus       153 M~~~mi~~g~s~~~pn~~~v~m~~glg~lp~~ivD  187 (293)
T COG4242         153 MSDHMIVAGDSGEYPNRELVDMGFGLGFLPGVIVD  187 (293)
T ss_pred             cCCceEeccCCCCCCCcchhhhccccccccceeee
Confidence            98764221   1  11     12478999888765

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=88.22  E-value=3.5  Score=35.80  Aligned_cols=68  Identities=21%  Similarity=0.201  Sum_probs=45.4

Q ss_pred             EEEEEecCCChH------HHHHHHHHCCCeEEEECCC----------CCC-CCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010            2 VVGVLALQGSFN------EHIAALKRLGVKGVEIRKP----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~~~G~~~------s~~~~l~~~G~~v~~~~~~----------~~l-~~~d~lil~GG~~~~~~~l~~~~~l~~~i   64 (215)
                      ||+++...+.-.      .+.+.|++.|+++.+....          ... ..+|.+|.-||-++...          .+
T Consensus         5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~----------~~   74 (305)
T PRK02645          5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLA----------AA   74 (305)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHH----------HH
Confidence            688888777422      3466788889987764321          111 35899999999776532          22


Q ss_pred             HHHHHcCCcEEEEeh
Q 028010           65 REFVKMGKPVWGTCA   79 (215)
Q Consensus        65 ~~~~~~~~PilGIC~   79 (215)
                      +.+...++|++||=.
T Consensus        75 ~~~~~~~~pv~gin~   89 (305)
T PRK02645         75 RHLAPHDIPILSVNV   89 (305)
T ss_pred             HHhccCCCCEEEEec
Confidence            333346999999987

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=88.20  E-value=3.2  Score=32.96  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             CEEEEEec--CCChHHHH----HHHHHCCCeEEEECCC----CCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHH
Q 028010            1 MVVGVLAL--QGSFNEHI----AALKRLGVKGVEIRKP----DQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFV   68 (215)
Q Consensus         1 m~v~il~~--~G~~~s~~----~~l~~~G~~v~~~~~~----~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~   68 (215)
                      ||++|+-.  .|+=..++    +.|+. |.++.+++..    .++.+||.||+.++.  +.....      +.+++++..
T Consensus         1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~------~~~fl~~~~   73 (177)
T PRK11104          1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSA------LYKFVKKHA   73 (177)
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHH------HHHHHHHHH
Confidence            88888776  45544444    44444 6676665432    356789998887752  111111      123333322


Q ss_pred             H--cCCcEEEEehHH
Q 028010           69 K--MGKPVWGTCAGL   81 (215)
Q Consensus        69 ~--~~~PilGIC~G~   81 (215)
                      .  .++|+.-.|.|+
T Consensus        74 ~~l~~K~v~~F~v~l   88 (177)
T PRK11104         74 TQLNQMPSAFFSVNL   88 (177)
T ss_pred             HHhCCCeEEEEEech
Confidence            1  588988888773

>PLN02929 NADH kinase

Probab=87.36  E-value=2.2  Score=37.07  Aligned_cols=56  Identities=18%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             HHHHHHHHCCCeEEEECCC---CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010           14 EHIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~---~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      .+.+.|++.|+++..+...   +.+.++|.+|.-||-++...          ..+.+ ..++|++||=.|
T Consensus        38 ~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L~----------aa~~~-~~~iPvlGIN~G   96 (301)
T PLN02929         38 FCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLLQ----------ASHFL-DDSIPVLGVNSD   96 (301)
T ss_pred             HHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHHH----------HHHHc-CCCCcEEEEECC
Confidence            4567899999998665432   34567999999999776432          22333 568999999988

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=87.32  E-value=3.7  Score=37.62  Aligned_cols=30  Identities=27%  Similarity=0.051  Sum_probs=27.2

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR   30 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~   30 (215)
                      |||+|+-+...=.++.+.|.+.|+++.+.+
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D   37 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSD   37 (448)
T ss_pred             CEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence            689999998888999999999999998876

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=85.92  E-value=3.3  Score=35.20  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=39.4

Q ss_pred             CEEEEEecCCChH-HHHHHHH----HCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFN-EHIAALK----RLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~----~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||..|++-.-.-. ++.+.|+    ..+.         ..+++|.+|.-||-++.+          ..++.+...++|++
T Consensus         1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~~~---------~~~~~D~vi~iGGDGT~L----------~a~~~~~~~~iPil   61 (259)
T PRK00561          1 MKYKIFASTTPQTEPVLPKLKKVLKKKLA---------VEDGADYLFVLGGDGFFV----------STAANYNCAGCKVV   61 (259)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHhhCCC---------ccCCCCEEEEECCcHHHH----------HHHHHhcCCCCcEE
Confidence            7888888755322 2334343    3332         235689999999977643          23344445789999


Q ss_pred             EEehHH
Q 028010           76 GTCAGL   81 (215)
Q Consensus        76 GIC~G~   81 (215)
                      ||=+|.
T Consensus        62 GIN~G~   67 (259)
T PRK00561         62 GINTGH   67 (259)
T ss_pred             EEecCC
Confidence            999874

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=85.53  E-value=6.8  Score=33.48  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             CEEEEEecCCChH------HHHHHHHHCCCeEEEECCC-----------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         1 m~v~il~~~G~~~------s~~~~l~~~G~~v~~~~~~-----------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      |||+|+...+.-.      .+.++| +.|+++.+....           ++. ++|.+|.-||-++.+...         
T Consensus         1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a~---------   69 (271)
T PRK01185          1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGTILRTL---------   69 (271)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHHHHHHH---------
Confidence            8999998766422      244556 468877654321           112 689999999977643222         


Q ss_pred             HHHHHHcCCcEEEEehH
Q 028010           64 LREFVKMGKPVWGTCAG   80 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G   80 (215)
                       +.   ...|++||=.|
T Consensus        70 -~~---~~~PilGIN~G   82 (271)
T PRK01185         70 -QR---AKGPILGINMG   82 (271)
T ss_pred             -HH---cCCCEEEEECC
Confidence             11   24699999888

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=85.08  E-value=5.7  Score=34.33  Aligned_cols=70  Identities=21%  Similarity=0.351  Sum_probs=46.2

Q ss_pred             EEEEEecCCC------hHHHHHHHHHCCCeEEEECC-----C---------CCCC-CcCEEEEcCCCcchHHHHHhhCCH
Q 028010            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P---------DQLQ-NVSSLIIPGGESTTMARLAEYHNL   60 (215)
Q Consensus         2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~-----~---------~~l~-~~d~lil~GG~~~~~~~l~~~~~l   60 (215)
                      ||+|+...+.      ...+.+.|++.|+++.+...     +         .++. .+|.+|.-||-++....       
T Consensus         6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~-------   78 (295)
T PRK01231          6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGA-------   78 (295)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHH-------
Confidence            6999877664      22456678888998776431     1         1122 48999999997655322       


Q ss_pred             HHHHHHHHHcCCcEEEEehHH
Q 028010           61 FPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        61 ~~~i~~~~~~~~PilGIC~G~   81 (215)
                         .+.+...++|++||=.|.
T Consensus        79 ---~~~~~~~~~Pvlgin~G~   96 (295)
T PRK01231         79 ---ARALARHNVPVLGINRGR   96 (295)
T ss_pred             ---HHHhcCCCCCEEEEeCCc
Confidence               233334689999999875

>PRK09271 flavodoxin; Provisional

Probab=83.24  E-value=10  Score=29.37  Aligned_cols=45  Identities=11%  Similarity=0.048  Sum_probs=29.3

Q ss_pred             CEEEEEec--CCChHH----HHHHHHHCCCeEEEECC--------CCCCCCcCEEEEcC
Q 028010            1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--------PDQLQNVSSLIIPG   45 (215)
Q Consensus         1 m~v~il~~--~G~~~s----~~~~l~~~G~~v~~~~~--------~~~l~~~d~lil~G   45 (215)
                      |||.|+-.  .||-..    +.+.|+..|+++++.+.        ..++.++|.|++..
T Consensus         1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt   59 (160)
T PRK09271          1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT   59 (160)
T ss_pred             CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence            88888774  555333    45667788988765432        12445789888865

>PRK06455 riboflavin synthase; Provisional

Probab=82.52  E-value=11  Score=29.56  Aligned_cols=76  Identities=14%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             CEEEEEecCCChH----HHHHHHHHCC--CeEEEECCCC------------CCCCcCEEEEcC--CCcchHHHHHhhCCH
Q 028010            1 MVVGVLALQGSFN----EHIAALKRLG--VKGVEIRKPD------------QLQNVSSLIIPG--GESTTMARLAEYHNL   60 (215)
Q Consensus         1 m~v~il~~~G~~~----s~~~~l~~~G--~~v~~~~~~~------------~l~~~d~lil~G--G~~~~~~~l~~~~~l   60 (215)
                      |||+|+.-+=|..    ...+.|++.|  .++.+++.|-            .-..||++|..|  |.....+.... .-.
T Consensus         2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~-~vS   80 (155)
T PRK06455          2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAH-EAS   80 (155)
T ss_pred             cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHH-HHH
Confidence            5999998655543    3567888844  6777766542            114699999998  44433222221 111


Q ss_pred             HHHHHHHHHcCCcEEEE
Q 028010           61 FPALREFVKMGKPVWGT   77 (215)
Q Consensus        61 ~~~i~~~~~~~~PilGI   77 (215)
                      .-+++-.++.++||.-+
T Consensus        81 ~GL~~lsL~t~~PVi~v   97 (155)
T PRK06455         81 IGLIMAQLMTNKHIIEV   97 (155)
T ss_pred             HHHHHHHhhhCCCEEEE
Confidence            22334444567776554

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=81.53  E-value=0.38  Score=37.15  Aligned_cols=42  Identities=12%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010           34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus        34 ~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      ++. .|.||+.||-...-..... ....++|.+..  .+.+.|||+
T Consensus        78 ~~~-~D~vVlmGGLAMP~~~v~~-e~v~~li~ki~--~~~iiGiCF  119 (147)
T PF09897_consen   78 DPH-PDVVVLMGGLAMPKSGVTP-EDVNELIKKIS--PKKIIGICF  119 (147)
T ss_dssp             -S--EEEEEEEGGGGSTTTS--H-HHHHHHHHHHE--EEEEEEEEE
T ss_pred             CCC-CCEEEEEcccccCCCCCCH-HHHHHHHHHhC--cCCEEEEeh
Confidence            344 8999999995432111111 12234555543  344999997

; PDB: 2R47_D.

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=80.03  E-value=6.6  Score=35.63  Aligned_cols=47  Identities=15%  Similarity=0.229  Sum_probs=32.4

Q ss_pred             CEEEEEecC-----C-----ChHHHHHHHHHCCCeEEE---ECCC-C--------CCCCcCEEEEcCCC
Q 028010            1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-D--------QLQNVSSLIIPGGE   47 (215)
Q Consensus         1 m~v~il~~~-----G-----~~~s~~~~l~~~G~~v~~---~~~~-~--------~l~~~d~lil~GG~   47 (215)
                      |||+|+...     |     |-..+.+.|+++|+++..   +.+. +        .+.++|.||++||.
T Consensus         1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGl   69 (413)
T TIGR00200         1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGL   69 (413)
T ss_pred             CEEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            899998753     2     333567889999998754   3332 1        23579999999974

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
2nv0_A	196	Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of		4e-40
2nv2_B	204	Structure Of The Plp Synthase Complex Pdx12 (YAADE)		3e-39
1r9g_A	216	Three-Dimensional Structure Of Yaae From Bacillus S		7e-39
1q7r_A	219	X-Ray Crystallographic Analysis Of A Predicted Amid		2e-38
2iss_D	208	Structure Of The Plp Synthase Holoenzyme From Therm		4e-37
2ywd_A	191	Crystal Structure Of Glutamine Amidotransferase Len		2e-35
2abw_A	227	Glutaminase Subunit Of The Plasmodial Plp Synthase		2e-28
4ads_G	217	Crystal Structure Of Plasmodial Plp Synthase Comple		2e-27
2ywj_A	186	Crystal Structure Of Uncharacterized Conserved Prot		8e-26

>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp Synthase From Bacillus Subtilis Length = 196

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 33/215 (15%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L++  L       E F GVFIRAP +L+ G +V+VL+++                    
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA +QG  LG +FHPELT D R   +F
Sbjct: 153 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLF 183

>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM BACILLUS Subtilis Length = 204

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 33/215 (15%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L++  L       E F GVFIRAP +L+ G +V+VL+++                    
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA +QG  LG +F+PELT D R   +F
Sbjct: 153 ----NGRIVAAKQGQFLGCSFNPELTEDHRVTQLF 183

>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis Length = 216

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 119/215 (55%), Gaps = 33/215 (15%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTT  RL + +  
Sbjct: 22  LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTXRRLIDTYQF 81
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP +GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 82  XEPLREFAAQGKPXFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 138
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L++  L       E F GVFIRAP +L+ G +V+VL+++                    
Sbjct: 139 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 172
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA +QG  LG +FHPELT D R   +F
Sbjct: 173 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLF 203

>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted Amidotransferase From B. Stearothermophilus At 1.9 A Resolution Length = 219

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 33/213 (15%)
Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVL LQG+  EH+ A++  G + V ++K +QL+ +  L++PGGESTT  RL + + L  
Sbjct: 26  IGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTXRRLIDRYGLXE 85
Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            L++F   GKP +GTCAGLI LA + VG     +  +G  D TV RN FG Q +SFEAEL
Sbjct: 86  PLKQFAAAGKPXFGTCAGLILLAKRIVGYD---EPHLGLXDITVERNSFGRQRESFEAEL 142
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
           S+  +       + F GVFIRAP +++ G  VDVLA Y                      
Sbjct: 143 SIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY---------------------- 174
Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                IVA RQG  LG +FHPELT D R    F
Sbjct: 175 --NDRIVAARQGQFLGCSFHPELTDDHRLXQYF 205

>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga Maritima Length = 208

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 121/215 (56%), Gaps = 32/215 (14%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL +QG   EH+ AL +LGV+ + ++ P+QL  V  LI+PGGESTTM R+ +  ++
Sbjct: 21  MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L E +  G PV+ TCAG+I LA +    K   QE +G LD TV RN +G Q++SFE 
Sbjct: 81  DEKLVERINNGLPVFATCAGVILLAKRI---KNYSQEKLGVLDITVERNAYGRQVESFET 137
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
            + +PA+     G + FR +FIRAP +++ G +V++LA Y                    
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATYDYDP---------------- 176
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                   V V++GN+L   FHPELT D R +  F
Sbjct: 177 --------VLVKEGNILACTFHPELTDDLRLHRYF 203

>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase Length = 191

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 122/218 (55%), Gaps = 40/218 (18%)
Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQG F EH  ALKRLG++  E+RK + L+ + +LI+PGGESTT+ +LA  + + 
Sbjct: 4   VVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIE 63
Query: 62  PALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
             +R+ V+ G   ++GTCAG I+LA + VG     Q  +G L+  V RN FG Q++SFE 
Sbjct: 64  DEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFEE 121
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYPVPSNKVLYSSSTVEIQ 177
           +L V  L S       F GVFIRAP    +G  V+VLA   D PV               
Sbjct: 122 DLEVEGLGS-------FHGVFIRAPVFRRLGEGVEVLARLGDLPV--------------- 159
Query: 178 EENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                        VRQG +L ++FHPELT D R +  F
Sbjct: 160 ------------LVRQGKVLASSFHPELTEDPRLHRYF 185

>pdb|2ABW|A Chain A, Glutaminase Subunit Of The Plasmodial Plp Synthase (Vitamin B6 Biosynthesis) Length = 227

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 110/222 (49%), Gaps = 31/222 (13%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
           + +GVL+LQG F  HI    +L +     +++R    L     L+IPGGESTT+ R   Y
Sbjct: 4   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63
Query: 58  HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
            N  L+ AL  F+  + KP+WGTCAG I L+      KL    G +   GGLD T+ RNF
Sbjct: 64  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPSNKVLY 169
           +GSQ  SF   L++  ++      +      IRAP + ++  D V VLA +         
Sbjct: 124 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATF--------- 172
Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211
                    E+  P   +I AV Q N LGT FHPEL   T +
Sbjct: 173 -------SHESYGP--NIIAAVEQNNCLGTVFHPELLPHTAF 205

>pdb|4ADS|G Chain G, Crystal Structure Of Plasmodial Plp Synthase Complex Length = 217

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 110/222 (49%), Gaps = 31/222 (13%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
           + +GVL+LQG F  HI    +L +     +++R    L     L+IPGGESTT+ R   Y
Sbjct: 2   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 61
Query: 58  HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
            N  L+ AL  F+  + KP+WGTCAG I L+      KL    G +   GGLD T+ RNF
Sbjct: 62  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 121
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPSNKVLY 169
           +GSQ  SF   L++  ++      +      IRAP + ++  D V VLA +         
Sbjct: 122 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATF--------- 170
Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211
                    E+  P   +I AV Q N LGT F+PEL   T +
Sbjct: 171 -------SHESYGP--NIIAAVEQNNCLGTVFNPELLPHTAF 203

>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Methanocaldococcus Jannaschii Length = 186

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 37/208 (17%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M++GVLA+QG   EH  A+K+ G +  ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1   MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              ++       P+ GTCAG++ L+ K  G     Q L+  +D TV RN +G Q+ SFE 
Sbjct: 61  LEKIKN---SNLPILGTCAGMVLLS-KGTGI---NQILLELMDITVKRNAYGRQVDSFEK 113
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           E+    L           GVFIRAP V                 +K+L  S  VE+   +
Sbjct: 114 EIEFKDLGK-------VYGVFIRAPVV-----------------DKIL--SDDVEVIARD 147
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTAD 208
                  IV V+QG  +  +FHPEL+ D
Sbjct: 148 GDK----IVGVKQGKYMALSFHPELSED 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	3e-77
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	9e-76
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	2e-75
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	2e-68
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	6e-65
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	6e-65
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	3e-08
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	4e-07
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	1e-06
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	4e-05
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	2e-04
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	3e-04

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196

 Score =  229 bits (586), Expect = 3e-77
 Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAG---SDNPHLGLLNVVVERNSFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +L++       G  E F GVFIRAP +L+ G +V+VL+++                    
Sbjct: 119 DLTIK------GLDEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA +QG  LG +FHPELT D R   +F
Sbjct: 153 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLF 183

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208

 Score =  226 bits (577), Expect = 9e-76
 Identities = 83/215 (38%), Positives = 120/215 (55%), Gaps = 32/215 (14%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL +QG   EH+ AL +LGV+ + ++ P+QL  V  LI+PGGESTTM R+ +  ++
Sbjct: 21  MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L E +  G PV+ TCAG+I LA +        QE +G LD TV RN +G Q++SFE 
Sbjct: 81  DEKLVERINNGLPVFATCAGVILLAKRIKN---YSQEKLGVLDITVERNAYGRQVESFET 137

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
            + +PA+     G + FR +FIRAP +++ G +V++LA Y                    
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATY-------------------- 172

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                   V V++GN+L   FHPELT D R +  F
Sbjct: 173 ----DYDPVLVKEGNILACTFHPELTDDLRLHRYF 203

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219

 Score =  225 bits (576), Expect = 2e-75
 Identities = 92/215 (42%), Positives = 122/215 (56%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ A++  G + V ++K +QL+ +  L++PGGESTTM RL + + L
Sbjct: 24  MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGL 83

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 84  MEPLKQFAAAGKPMFGTCAGLILLAKRIVG---YDEPHLGLMDITVERNSFGRQRESFEA 140

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           ELS+       G  + F GVFIRAP +++ G  VDVLA Y                    
Sbjct: 141 ELSIK------GVGDGFVGVFIRAPHIVEAGDGVDVLATYN------------------- 175

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA RQG  LG +FHPELT D R    F
Sbjct: 176 -----DRIVAARQGQFLGCSFHPELTDDHRLMQYF 205

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186

 Score =  207 bits (528), Expect = 2e-68
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 40/217 (18%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M++GVLA+QG   EH  A+K+ G +  ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1   MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              ++       P+ GTCAG++ L+          Q L+  +D TV RN +G Q+ SFE 
Sbjct: 61  LEKIKNS---NLPILGTCAGMVLLSKGTG----INQILLELMDITVKRNAYGRQVDSFEK 113

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLADYPVPSNKVLYSSSTVEIQEE 179
           E+                GVFIRAP V  +   DV+V+A                     
Sbjct: 114 EIEFK-------DLGKVYGVFIRAPVVDKILSDDVEVIARD------------------- 147

Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTADT-RWYIIF 215
                   IV V+QG  +  +FHPEL+ D  + Y  F
Sbjct: 148 -----GDKIVGVKQGKYMALSFHPELSEDGYKVYKYF 179

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Length = 191

 Score =  198 bits (504), Expect = 6e-65
 Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 34/216 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
            VVGVLALQG F EH  ALKRLG++  E+RK + L+ + +LI+PGGESTT+ +LA  + +
Sbjct: 3   GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGI 62

Query: 61  FPALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
              +R+ V+ G   ++GTCAG I+LA + VG     Q  +G L+  V RN FG Q++SFE
Sbjct: 63  EDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFE 120

Query: 120 AELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEE 179
            +L V        G  +F GVFIRAP    +G  V+VLA                     
Sbjct: 121 EDLEVE-------GLGSFHGVFIRAPVFRRLGEGVEVLARL------------------- 154

Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  + V VRQG +L ++FHPELT D R +  F
Sbjct: 155 -----GDLPVLVRQGKVLASSFHPELTEDPRLHRYF 185

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227

 Score =  199 bits (507), Expect = 6e-65
 Identities = 78/226 (34%), Positives = 106/226 (46%), Gaps = 31/226 (13%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEI---RKPDQLQNVSSLIIPGGESTTMARLAEY 57
           + +GVL+LQG F  HI    +L +  + I   R    L     L+IPGGESTT+ R   Y
Sbjct: 4   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63

Query: 58  HN--LFPALREFVK-MGKPVWGTCAGLIFLA----NKAVGQKLGGQELVGGLDCTVHRNF 110
            N  L+ AL  F+  + KP+WGTCAG I L+    N  +    G +   GGLD T+ RNF
Sbjct: 64  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123

Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLADYPVPSNKVLY 169
           +GSQ  SF   L++ +        +      IRAP + ++   +V VLA           
Sbjct: 124 YGSQNDSFICSLNIISD--SSAFKKDLTAACIRAPYIREILSDEVKVLA----------- 170

Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                     +      +I AV Q N LGT FHPEL   T +   F
Sbjct: 171 -------TFSHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYF 209

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Length = 200

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
          AL+  G      + P   +    L++PG G     M    E       +R  ++ G P  
Sbjct: 21 ALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQES-GFVERVRRHLERGLPFL 79

Query: 76 GTCAGL 81
          G C G+
Sbjct: 80 GICVGM 85

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B Length = 201

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 18 ALKRLGVKG----VEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMG 71
           +KR         +E+ +  +      L IPG G     M RL E  +L   +R+ V+  
Sbjct: 19 GVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLREN-DLIDFVRKHVEDE 77

Query: 72 KPVWGTCAGL 81
          + V G C G+
Sbjct: 78 RYVVGVCLGM 87

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Length = 555

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 33/198 (16%)

Query: 18  ALKRLGVKGVEIRKPD--QLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKP 73
           A++ LG +   ++ P    +   S LI+PG G     +  L         +RE+++ GKP
Sbjct: 23  AIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNR-GFEKPIREYIESGKP 81

Query: 74  VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGG 133
           + G   GL  L   +   +      +  +D  + R  F         E  VP +      
Sbjct: 82  IMGIXVGLQALFAGS--VESPKSTGLNYIDFKLSR--FDDS------EKPVPEIG----- 126

Query: 134 PETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMP-------EKK 186
              +            + P       Y V S   + +S   +  E +           ++
Sbjct: 127 ---WNSCIPSENLFFGLDPYKRY---YFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEE 180

Query: 187 VIVAVRQGNLLGTAFHPE 204
            I AV + N+  T FHPE
Sbjct: 181 FIAAVNKNNIFATQFHPE 198

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} Length = 213

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 1  MVVGVLALQGSFNEH--IAALKRLGVKGVEIRKPDQLQNVSSLIIPGGEST-------TM 51
              V+   GS  +     AL+  G +   +   D+L +   +I+PGG S         +
Sbjct: 3  PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAV 62

Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAG 80
          A       +   + +  + GK + G C G
Sbjct: 63 AARE---KIAFEIAKAAERGKLIMGICNG 88

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 32/236 (13%), Positives = 55/236 (23%), Gaps = 75/236 (31%)

Query: 5   VLALQGSFNEHIAALKR-LGVKGVEIRK---------PDQLQNVSSLIIPGGESTTMARL 54
           +  +     E   A      ++G ++           P  + +   LI+ GG  +  +  
Sbjct: 3   IHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTK 62

Query: 55  AEYHNLFPA-----LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN 109
            E+           +++  K  K + G C              LG Q +          +
Sbjct: 63  KEFPYYDAQAEVKLIQKAAKSEKIIVGVC--------------LGAQLMGVAYGADYLHS 108

Query: 110 ---FFG-SQIQSFEAELSVPALASQEGGPETFRGVF------IRAPAVLDVGPDVDVLAD 159
                G   I   EA      L+      +    V          P          VLA 
Sbjct: 109 PKKEIGNYLISLTEAGKMDSYLS---DFSDDLL-VGHWHGDMPGLP------DKAQVLA- 157

Query: 160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG-NLLGTAFHPELTADT--RWY 212
                      S     Q             ++ G        H E T +      
Sbjct: 158 ----------ISQGCPRQ------------IIKFGPKQYAFQCHLEFTPELVAALI 191

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 43/228 (18%), Positives = 64/228 (28%), Gaps = 65/228 (28%)

Query: 5   VLALQGSFNEHIAALKR-LGVKGVEIR---------KPDQLQNVSSLIIPGGESTTM--A 52
           VLA++    E +  ++     K                  L+  S +++ GG        
Sbjct: 15  VLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEE 74

Query: 53  RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG 112
           +       F  + E +K   P  G C              LG Q L   L  +V+R   G
Sbjct: 75  KYPFLKYEFQLIEEILKKEIPFLGIC--------------LGSQMLAKVLGASVYRGKNG 120

Query: 113 SQIQSFEAELSVPALASQEGGPETFRGVF------IRAPAVLDVGPDVDVLADYPVPSNK 166
            +I  +  E  V         P+  R VF         P           +         
Sbjct: 121 EEIGWYFVEK-VSDNKFFREFPDRLR-VFQWHGDTFDLP------RRATRVF-------- 164

Query: 167 VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT--RWY 212
              +S   E Q                G  +G  FH E+ A T  RW 
Sbjct: 165 ---TSEKYENQ------------GFVYGKAVGLQFHIEVGARTMKRWI 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	100.0
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	100.0
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.97
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.97
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.97
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.97
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.97
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.97
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.97
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.97
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.96
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.96
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.95
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.95
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.95
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.95
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.94
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.93
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.93
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.93
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.92
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.91
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.91
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.91
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.9
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.88
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.87
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.87
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.86
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.83
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.83
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.8
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.74
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.65
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.59
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.58
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	99.5
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	99.38
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.17
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	99.09
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	98.91
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	98.89
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	98.89
3er6_A	209	Putative transcriptional regulator protein; struct	98.85
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	98.84
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	98.81
2fex_A	188	Conserved hypothetical protein; structural genomic	98.78
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	98.78
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	98.74
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	98.73
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	98.73
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	98.7
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.63
3gra_A	202	Transcriptional regulator, ARAC family; transcript	98.62
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	98.59
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	98.57
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	98.57
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.54
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.53
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.53
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	98.52
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.5
1u9c_A	224	APC35852; structural genomics, protein structure i	98.46
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	98.42
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	98.33
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	98.29
3n7t_A	247	Macrophage binding protein; seattle structural gen	98.27
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.27
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	98.23
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	98.15
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	98.14
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	97.77
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	95.7
1z0s_A	278	Probable inorganic polyphosphate/ATP-NAD kinase; A	94.13
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	92.65
2i2c_A	272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	90.44
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	90.04
2zuv_A	759	Lacto-N-biose phosphorylase; beta-alpha-barrel, TI	87.97
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	86.86
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	86.63
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	86.42
1u0t_A	307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	86.22
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	85.65
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	81.86
2an1_A	292	Putative kinase; structural genomics, PSI, protein	80.89
3nq4_A	156	6,7-dimethyl-8-ribityllumazine synthase; 30MER, ic	80.68
2i0f_A	157	6,7-dimethyl-8-ribityllumazine synthase 1; lumazin	80.27

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=100.00  E-value=5.3e-36  Score=244.03  Aligned_cols=182  Identities=20%  Similarity=0.311  Sum_probs=141.9

Q ss_pred             EEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         2 ~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      ||+|+++. ||..|+.++|+++|++++++++++++.++|+||+||+.+  +.+..+.. .   .+++...+.++|+||||
T Consensus         4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l~~~D~lilPG~g~~~~~~~~~~~-~---~~i~~~~~~~~PvlGIC   79 (211)
T 4gud_A            4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAMKNLTE-R---DLIELVKRVEKPLLGIC   79 (211)
T ss_dssp             CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHHHHCSEEEECCCSCHHHHHHHHHH-T---TCHHHHHHCCSCEEEET
T ss_pred             EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHHhCCCEEEECCCCCHHHHHHHHHh-c---ChHHHHHHcCCCEEEEc
Confidence            79999995 478899999999999999999988888999999999532  34444433 2   34555667899999999


Q ss_pred             hHHHHHHHhhccCC---CCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--C
Q 028010           79 AGLIFLANKAVGQK---LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D  153 (215)
Q Consensus        79 ~G~QlLa~~~~~~~---~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~  153 (215)
                      +|||+|+.++++..   .....++|+++++|.++..+.        ...++++|+.+...      ..+++++++++  .
T Consensus        80 lG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~------~~~~l~~~l~~~~~  145 (211)
T 4gud_A           80 LGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGD--------LPLPHMGWNTVQVK------EGHPLFNGIEPDAY  145 (211)
T ss_dssp             HHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTT--------SCSSEEEEECCEEC------TTCGGGTTCCTTCC
T ss_pred             hhHhHHHHHhCCcccccCCccccceeccceEEEcccCC--------cceeeccceeeeee------ccChhhcCCCCCcE
Confidence            99999999987642   224578999999999876433        35678899765431      36789999854  5


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR  210 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~  210 (215)
                      ++++|++.+....    .++|+++++     ..++++++++|+||+|||||++.+.|
T Consensus       146 ~~~~H~~~v~~~~----~~~a~~~~g-----~~~~~~v~~~~v~GvQFHPE~s~~~G  193 (211)
T 4gud_A          146 FYFVHSFAMPVGD----YTIAQCEYG-----QPFSAAIQAGNYYGVQFHPERSSKAG  193 (211)
T ss_dssp             EEEEESEECCCCT----TEEEEEESS-----SEEEEEEEETTEEEESSCGGGSHHHH
T ss_pred             EEEEeeEEeCCCC----eEEEEecCC-----CeEEEEEeCCCEEEEEccCEecCccH
Confidence            7888988764322    688999987     56788899999999999999987654

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=6.9e-33  Score=225.67  Aligned_cols=183  Identities=38%  Similarity=0.582  Sum_probs=135.1

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+|+++.|++.++.++|+++|+++++++..++++++|+||+|||.+..++.+.++..+.+.|++++++++|+||||+|
T Consensus        21 ~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G  100 (208)
T 2iss_D           21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAG  100 (208)
T ss_dssp             CEEEEECSSSCHHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred             cEEEEEECCCchHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHH
Confidence            69999999999999999999999999999887778899999999997766655555566789999999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEe
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~  160 (215)
                      +|+|+.++++.   ..+++|++++++.+++.|.+...+.....++.++|++                    -.++++|++
T Consensus       101 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~--------------------~~~~~~h~~  157 (208)
T 2iss_D          101 VILLAKRIKNY---SQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKDP--------------------FRAIFIRAP  157 (208)
T ss_dssp             HHHHEEEEC------CCCCCCEEEEEETTTTCSGGGCEEEEECCGGGCSSC--------------------EEEEESSCC
T ss_pred             HHHHHHHcCCC---CCCCccccceEEEecCCCcccccccCCcccccCCCCc--------------------eEEEEEeCc
Confidence            99999999863   4788999999998765444332221111222223221                    124555655


Q ss_pred             eCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       161 ~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      .+...++. ..++|+++ +       .+++++.+|++|+|||||++.+.++.++|
T Consensus       158 ~v~~~~~~-~~v~a~~d-~-------~~~a~~~~~i~GvQfHPE~~~~~~l~~~f  203 (208)
T 2iss_D          158 RIVETGKN-VEILATYD-Y-------DPVLVKEGNILACTFHPELTDDLRLHRYF  203 (208)
T ss_dssp             EEEEECSS-CEEEEEET-T-------EEEEEEETTEEEESSCGGGSSCCHHHHHH
T ss_pred             ccccCCCC-cEEEEEEC-C-------EEEEEEECCEEEEEeCCCcCCcHHHHHHH
Confidence            44332222 26778774 3       67888889999999999999876776654

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.97  E-value=1.1e-31  Score=216.34  Aligned_cols=180  Identities=40%  Similarity=0.651  Sum_probs=133.7

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+|+++.+++.++.++|+++|+++++++.+++++++|+||+|||.+..++.+.++..+.++|++++++++|+||||+|
T Consensus         2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G   81 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAG   81 (196)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred             cEEEEEEccCCcHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHH
Confidence            69999999999999999999999999999877778899999999998766555555567789999999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--eEEEE
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLA  158 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~~~~H  158 (215)
                      +|+|+.++++.   ..+++|++++++.+++.|.+..++                       ..+..+.+++..  ++++|
T Consensus        82 ~q~l~~~~gg~---~~~~lg~~~~~~~~~~~g~~~~~~-----------------------~~~~~~~~~g~~~~~~~~h  135 (196)
T 2nv0_A           82 LIILAKEIAGS---DNPHLGLLNVVVERNSFGRQVDSF-----------------------EADLTIKGLDEPFTGVFIR  135 (196)
T ss_dssp             HHHHSBCCC-------CCCCCSCEEEECCCSCTTTSEE-----------------------EEEECCTTCSSCEEEEEES
T ss_pred             HHHHHHHhcCC---CCCcccCCceeEeccCCCcccccc-----------------------cCCcccccCCCceEEEEEe
Confidence            99999999863   357899999988765433222111                       112223334333  35566


Q ss_pred             EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      ++.+...++. ..++|+++.        .+++++.+|++|+|||||++.+..+.++|
T Consensus       136 ~~~v~~~~~~-~~v~a~~d~--------~~~a~~~~~~~gvQfHPE~~~~~~l~~~f  183 (196)
T 2nv0_A          136 APHILEAGEN-VEVLSEHNG--------RIVAAKQGQFLGCSFHPELTEDHRVTQLF  183 (196)
T ss_dssp             CCEEEEECTT-CEEEEEETT--------EEEEEEETTEEEESSCTTSSSCCHHHHHH
T ss_pred             cceecccCCC-cEEEEEECC--------EEEEEEECCEEEEEECCccCCchHHHHHH
Confidence            6654332332 267888742        46788889999999999999887776654

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.97  E-value=5.8e-32  Score=216.65  Aligned_cols=181  Identities=41%  Similarity=0.589  Sum_probs=135.6

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC-CcEEEEeh
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCA   79 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~-~PilGIC~   79 (215)
                      |+|+|+.++|++.++.++|+++|+++++++++++++++|+||+|||++..++.+.++..+.+.|+++++++ +|+||||+
T Consensus         3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~   82 (191)
T 2ywd_A            3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCA   82 (191)
T ss_dssp             CCEEEECSSSCHHHHHHHHHTTTCCCEEECSGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETH
T ss_pred             cEEEEEecCCchHHHHHHHHHCCCEEEEeCChhhhccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECH
Confidence            47999999999999999999999999999887788899999999997655566654467889999999999 99999999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-CCCeEEEE
Q 028010           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLA  158 (215)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-~~~~~~~H  158 (215)
                      |+|+|+.++++.  ...+++|++++++.++++|++..++.                       .+..+.++ .-.++++|
T Consensus        83 G~Q~l~~~~gg~--~~~~~lg~~~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~~~~~~H  137 (191)
T 2ywd_A           83 GAIWLAKEIVGY--PEQPRLGVLEAWVERNAFGRQVESFE-----------------------EDLEVEGLGSFHGVFIR  137 (191)
T ss_dssp             HHHHHEEEETTC--TTCCCCCCEEEEEETTCSCCSSSEEE-----------------------EEEEETTTEEEEEEEES
T ss_pred             HHHHHHHHhCCC--CCCccccccceEEEcCCcCCcccccc-----------------------ccccccCCCceeEEEEc
Confidence            999999999852  14678999999987754333221110                       11112222 01356788


Q ss_pred             EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      |+.+...++.. .++|+++ +       .+++++++|++|+|||||++.+.++.++|
T Consensus       138 s~~v~~l~~~~-~~~a~~~-~-------~~~a~~~~~~~gvQfHPE~~~~~~l~~~f  185 (191)
T 2ywd_A          138 APVFRRLGEGV-EVLARLG-D-------LPVLVRQGKVLASSFHPELTEDPRLHRYF  185 (191)
T ss_dssp             CCEEEEECTTC-EEEEEET-T-------EEEEEEETTEEEESSCGGGSSCCHHHHHH
T ss_pred             ccceeccCCCc-EEEEEEC-C-------EEEEEEECCEEEEEeCCCCCCCcHHHHHH
Confidence            87664333322 6778884 3       68899999999999999999876665543

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=5.3e-32  Score=216.42  Aligned_cols=174  Identities=32%  Similarity=0.526  Sum_probs=128.7

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+||++.|++.++.++|+++|+++++++++++++++|+||+|||+.+.++.+.+..++.+.|+   +.++|+||||+|
T Consensus         1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G   77 (186)
T 2ywj_A            1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAG   77 (186)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTSEEEEECSGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHH
T ss_pred             CEEEEEecCcchHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHH
Confidence            89999999999999999999999999999877778899999999998766655554456677766   689999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-CCCeEEEEE
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLAD  159 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-~~~~~~~Hs  159 (215)
                      ||+|+.++|+    ..+++|++++++.++..+++..++                       ..++++.++ .-.++++|+
T Consensus        78 ~Qll~~~~gg----~~~~lg~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~H~  130 (186)
T 2ywj_A           78 MVLLSKGTGI----NQILLELMDITVKRNAYGRQVDSF-----------------------EKEIEFKDLGKVYGVFIRA  130 (186)
T ss_dssp             HHHHSSCCSS----CCCCCCCSSEEEETTTTCSSSCCE-----------------------EEEEEETTTEEEEEEESSC
T ss_pred             HHHHHHHhCC----CcCccCCCceeEEeccCCCcccce-----------------------ecccccccCCcEEEEEEec
Confidence            9999999864    356788888887754322211111                       122334444 114566788


Q ss_pred             eeCCCC-ccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC-Ccccc
Q 028010          160 YPVPSN-KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWYI  213 (215)
Q Consensus       160 ~~~~~~-~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~-~~~~~  213 (215)
                      +.+... ++.. .++|+++ +       .++++++++++|+|||||++.+ ..+.+
T Consensus       131 ~~v~~l~~~~~-~v~a~sd-~-------~~~a~~~~~~~gvQfHPE~~~~g~~l~~  177 (186)
T 2ywj_A          131 PVVDKILSDDV-EVIARDG-D-------KIVGVKQGKYMALSFHPELSEDGYKVYK  177 (186)
T ss_dssp             CEEEEECCTTC-EEEEEET-T-------EEEEEEETTEEEESSCGGGSTTHHHHHH
T ss_pred             ceeeecCCCCe-EEEEEEC-C-------EEEEEeeCCEEEEECCCCcCCchhHHHH
Confidence            776443 3332 6788884 2       5788888999999999999986 34444

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.97  E-value=3.7e-32  Score=223.93  Aligned_cols=195  Identities=35%  Similarity=0.577  Sum_probs=137.3

Q ss_pred             CEEEEEecCCChHHHHHHHHHC---CCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhh--CCHHHHHHHHHHc-CCcE
Q 028010            1 MVVGVLALQGSFNEHIAALKRL---GVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEY--HNLFPALREFVKM-GKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~---G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~--~~l~~~i~~~~~~-~~Pi   74 (215)
                      |||+|+++++++.++.++|+++   |++++.++.+++++++|+||||||.++.++.+.++  ..+.+.|++++++ ++|+
T Consensus         4 ~~I~Il~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~Pi   83 (227)
T 2abw_A            4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI   83 (227)
T ss_dssp             EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred             cEEEEEeCCCCcHHHHHHHHHhccCCeEEEEEcCccccccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEE
Confidence            5899999999999999999999   99999888776777899999999987666555332  3567899999999 9999


Q ss_pred             EEEehHHHHHHHhhccCC-CCC---ccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010           75 WGTCAGLIFLANKAVGQK-LGG---QELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~-~~~---~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~  150 (215)
                      ||||+|||+|+.++++.. .+.   .+++|++++++.++.+|++..++.....++.++  ..               .+-
T Consensus        84 lGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~---------------~g~  146 (227)
T 2abw_A           84 WGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDS--SA---------------FKK  146 (227)
T ss_dssp             EEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCC--TT---------------CCT
T ss_pred             EEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCcccccccccccccccc--cc---------------CCC
Confidence            999999999999998642 111   678999999888765544433332211222210  00               000


Q ss_pred             CCCeEEEEEeeCCCC-ccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          151 GPDVDVLADYPVPSN-KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       151 ~~~~~~~Hs~~~~~~-~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      .-.+++.|++.+... ++. ..++|+++++.  ++...+++++++|++|+|||||++.+.++++||
T Consensus       147 ~~~~~~~h~~~v~~~~~~~-~~vla~~~~~~--~g~~~~~a~~~~~v~gvQfHPE~~~~~~l~~~F  209 (227)
T 2abw_A          147 DLTAACIRAPYIREILSDE-VKVLATFSHES--YGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYF  209 (227)
T ss_dssp             TCEEEEESCCEEEEECCTT-CEEEEEEEETT--TEEEEEEEEEETTEEEESSCGGGSSCCHHHHHH
T ss_pred             ceeEEEEEcceEeecCCCC-cEEEEEccccc--CCCCceEEEEECCEEEEEECCeeCCCcHHHHHH
Confidence            112466677655432 332 26889987510  002467788899999999999999988888876

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.97  E-value=1.1e-31  Score=217.07  Aligned_cols=178  Identities=19%  Similarity=0.219  Sum_probs=135.8

Q ss_pred             CEEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC-Cc-chHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-ES-TTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG-~~-~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |||+|+++. +++.++.++|+++|+++++++++++++++|+||+||| .. ..+.++.+ ..+.++|+++++.++|+|||
T Consensus         3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~d~lil~G~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PilGI   81 (200)
T 1ka9_H            3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQE-SGFVERVRRHLERGLPFLGI   81 (200)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSS-SCTHHHHHHHHHTTCCEEEC
T ss_pred             cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChHHcccCCEEEECCCCcHHHHHHHHHh-cCHHHHHHHHHHcCCeEEEE
Confidence            589999885 5899999999999999999988778889999999994 32 33445432 45789999999999999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV  156 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~  156 (215)
                      |+|+|+|+.++.+-  |+.+++|++++++.+++.          .+.|++||+++..       .+ + |.+++. .+++
T Consensus        82 C~G~Qll~~~~~~~--Gg~~~l~~~~g~v~~~~~----------~~~~~~G~~~v~~-------~~-~-l~~~~~~~~~~  140 (200)
T 1ka9_H           82 CVGMQVLYEGSEEA--PGVRGLGLVPGEVRRFRA----------GRVPQMGWNALEF-------GG-A-FAPLTGRHFYF  140 (200)
T ss_dssp             THHHHTTSSEETTS--TTCCCCCSSSSEEEECCS----------SSSSEEEEEECEE-------CG-G-GGGGTTCEEEE
T ss_pred             cHHHHHHHHhcccc--CCcCCccccccEEEECCC----------CCCCceeEEEEEe-------ch-h-hhcCCCCCEEE
Confidence            99999999996421  237889999999987531          1367899987652       13 4 666643 4678


Q ss_pred             EEEeeCCCCccccCCcceeeec-ccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010          157 LADYPVPSNKVLYSSSTVEIQE-ENAMPEKKVIVAVRQGNLLGTAFHPELTADT  209 (215)
Q Consensus       157 ~Hs~~~~~~~~~~~~~la~s~~-~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~  209 (215)
                      +||+++ ...+.  .+ |++++ +     ..+++++.+++++|+|||||++.+.
T Consensus       141 ~Hs~~~-~~~~~--~v-a~s~~~g-----~~~~~~~~~~~i~gvQfHPE~~~~~  185 (200)
T 1ka9_H          141 ANSYYG-PLTPY--SL-GKGEYEG-----TPFTALLAKENLLAPQFHPEKSGKA  185 (200)
T ss_dssp             EESEEC-CCCTT--CC-EEEEETT-----EEEEEEEECSSEEEESSCTTSSHHH
T ss_pred             eccccc-CCCCC--cE-EEEEeCC-----eEEEEEEeeCCEEEEecCCCcCccc
Confidence            999988 43222  56 88887 3     2456666777999999999998754

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.97  E-value=1.9e-31  Score=215.67  Aligned_cols=173  Identities=22%  Similarity=0.292  Sum_probs=131.9

Q ss_pred             CEEEEEecC-CChHHHHHHHHHCC-----CeEEEECCCCCCCCcCEEEEcCC-C-cchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MVVGVLALQ-GSFNEHIAALKRLG-----VKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~-G~~~s~~~~l~~~G-----~~v~~~~~~~~l~~~d~lil~GG-~-~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |||+||+++ |++.++.++|+++|     +++++++++++ .++|+|||||| . ...+.++.. ..+.++|++++++++
T Consensus         1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~-~~~dglilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~   78 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN-DLYDLLFIPGVGHFGEGMRRLRE-NDLIDFVRKHVEDER   78 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS-SCCSEEEECCCSCSHHHHHHHHH-TTCHHHHHHHHHTTC
T ss_pred             CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc-cCCCEEEECCCCcHHHHHHHHHh-hCHHHHHHHHHHcCC
Confidence            899999987 68999999999999     99999988777 88999999995 2 234556644 457889999999999


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC-
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-  151 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~-  151 (215)
                      |+||||+|||+|+.++++.  +..++++++++++.+++.+          +.|++||+.+.              ...+ 
T Consensus        79 PilGIC~G~Qll~~~~g~~--G~~~~l~~~~g~v~~~~~~----------~~~~~g~~~l~--------------~~~~~  132 (201)
T 1gpw_B           79 YVVGVCLGMQLLFEESEEA--PGVKGLSLIEGNVVKLRSR----------RLPHMGWNEVI--------------FKDTF  132 (201)
T ss_dssp             EEEEETHHHHTTSSEETTE--EEEECCCSSSEEEEECCCS----------SCSEEEEEEEE--------------ESSSS
T ss_pred             eEEEEChhHHHHHHhhccC--CCCCCcceeeeEEEEcCCC----------CCCcccceeeE--------------eccCC
Confidence            9999999999999998642  2367888888988875311          35678885432              1111 


Q ss_pred             --CCeEEEEEeeCCCCccccCCcceeeec-ccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010          152 --PDVDVLADYPVPSNKVLYSSSTVEIQE-ENAMPEKKVIVAVRQGNLLGTAFHPELTADT  209 (215)
Q Consensus       152 --~~~~~~Hs~~~~~~~~~~~~~la~s~~-~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~  209 (215)
                        ..++++|++.+... .  ..++|++++ +     ..+.++..++|++|+|||||++.+.
T Consensus       133 ~~~~v~~~H~~~v~~~-~--~~vla~s~~~g-----~~~~a~~~~~~i~gvQfHPE~~~~~  185 (201)
T 1gpw_B          133 PNGYYYFVHTYRAVCE-E--EHVLGTTEYDG-----EIFPSAVRKGRILGFQFHPEKSSKI  185 (201)
T ss_dssp             CCEEEEEEESEEEEEC-G--GGEEEEEEETT-----EEEEEEEEETTEEEESSCGGGSHHH
T ss_pred             CCCeEEEECcceeccC-C--CEEEEEEccCC-----ceEEEEEECCCEEEEECCCcccCHh
Confidence              24688899887544 2  278999987 2     1355555667999999999999554

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.97  E-value=6.5e-31  Score=241.98  Aligned_cols=191  Identities=22%  Similarity=0.318  Sum_probs=148.0

Q ss_pred             CEEEEEecC-CChHHHHHHHHHCCCeEEEECCCCC--CCCcCEEEEcC-CCcc-hHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPG-GEST-TMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~--l~~~d~lil~G-G~~~-~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |||+|+++. +++.++.++|+++|+++++++.+++  ++++|+||||| |... .+..+.. ..+.++|++++++++|+|
T Consensus         5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~~~l~~~DglILpGgG~~~~~~~~l~~-~~~~~~i~~~~~~g~PiL   83 (555)
T 1jvn_A            5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN-RGFEKPIREYIESGKPIM   83 (555)
T ss_dssp             CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHH-TTCHHHHHHHHHTTCCEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccccccccCCEEEECCCCchHhHhhhhhh-ccHHHHHHHHHHcCCcEE
Confidence            389999995 7889999999999999999987665  78999999999 4432 3444433 466889999999999999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--C
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~  153 (215)
                      |||+|||+|+.++.+.  ++.++||++++++.+++.  +      ..+.|++||+++..       . +++|+++++  .
T Consensus        84 GIC~G~QlL~~a~~eg--g~~~~Lg~lgg~v~~~~~--~------~~~~~~~G~~~v~~-------~-~~L~~~l~~~~~  145 (555)
T 1jvn_A           84 GIXVGLQALFAGSVES--PKSTGLNYIDFKLSRFDD--S------EKPVPEIGWNSCIP-------S-ENLFFGLDPYKR  145 (555)
T ss_dssp             EEEHHHHTTEEEETTB--TTCCCCCSEEEEEEECCT--T------TSCSSEEEEECCCC-------C-TTCCTTCCTTSC
T ss_pred             EEchhhhhhhhhhhcC--CCccccCCCCcEEEECCc--C------CCCCccccceEEEE-------c-CHHHhhCCCCce
Confidence            9999999999998421  357889999999987531  0      13578999998753       2 788988865  5


Q ss_pred             eEEEEEeeCCCCcc------ccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC--Cccccc
Q 028010          154 VDVLADYPVPSNKV------LYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD--TRWYII  214 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~------~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~--~~~~~~  214 (215)
                      ++++|||+....+.      ....++|+++++    ...++++++++|+||+|||||++.+  .+++++
T Consensus       146 ~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~----~D~~i~ai~~~~i~GvQFHPE~s~~~g~~l~~~  210 (555)
T 1jvn_A          146 YYFVHSFAAILNSEKKKNLENDGWKIAKAKYG----SEEFIAAVNKNNIFATQFHPEKSGKAGLNVIEN  210 (555)
T ss_dssp             EEEEESEECBCCHHHHHHHHHTTCEEEEEEET----TEEEEEEEEETTEEEESSBGGGSHHHHHHHHHH
T ss_pred             EEEEEEEEEEecccccccCCCCCEEEEEEcCC----CCCeEEEEEeCCEEEEEeCcEecChhHHHHHHH
Confidence            89999998854321      123688999985    1158899999999999999999865  345444

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.97  E-value=6e-31  Score=215.83  Aligned_cols=180  Identities=39%  Similarity=0.617  Sum_probs=132.9

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+|+++.|++.++.++|+++|+++++++..++++++|+||||||++..++.+.+...+.++|++++++++|+||||+|
T Consensus        24 ~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G  103 (219)
T 1q7r_A           24 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAG  103 (219)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred             CEEEEEeCCCCcHHHHHHHHHCCCEEEEECCHHHHhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHH
Confidence            68999999999999999999999999999887778899999999998766555555566789999999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--eEEEE
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLA  158 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~~~~H  158 (215)
                      +|+|+.++++.   ..+++|++++++.+++.                |+.....       ..+..+.+++..  +++.|
T Consensus       104 ~QlL~~~~gg~---~~~~lg~~~~~~~~~~~----------------g~~~~~~-------~~~~~~~g~g~~~~~~~~h  157 (219)
T 1q7r_A          104 LILLAKRIVGY---DEPHLGLMDITVERNSF----------------GRQRESF-------EAELSIKGVGDGFVGVFIR  157 (219)
T ss_dssp             HHHHEEEEESS---CCCCCCCEEEEEECHHH----------------HCCCCCE-------EEEEEETTTEEEEEEEESS
T ss_pred             HHHHHHHhCCC---CcCCcCccceEEEecCC----------------Cccccce-------ecCcccCCCCCceEEEEEe
Confidence            99999999863   35789999988876432                2211110       011222333222  34456


Q ss_pred             EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      ++.+...++. ..++|+++ +       .+++++.++++|+|||||++.+..+.++|
T Consensus       158 ~~~v~~l~~~-~~v~a~sd-g-------~~ea~~~~~i~GvQfHPE~~~~~~l~~~f  205 (219)
T 1q7r_A          158 APHIVEAGDG-VDVLATYN-D-------RIVAARQGQFLGCSFHPELTDDHRLMQYF  205 (219)
T ss_dssp             CCEEEEECTT-CEEEEEET-T-------EEEEEEETTEEEESSCGGGSSCCHHHHHH
T ss_pred             cceeeccCCC-cEEEEEcC-C-------EEEEEEECCEEEEEECcccCCCHHHHHHH
Confidence            5544332332 26778873 2       57888889999999999999876776665

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.96  E-value=1.1e-29  Score=212.32  Aligned_cols=170  Identities=15%  Similarity=0.105  Sum_probs=121.1

Q ss_pred             CEEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |||.||....  +..++.++|++.|+++++++.      +++++++|+|||+||..+..+...+...+.++|+++++.++
T Consensus         4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~   83 (250)
T 3m3p_A            4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRV   83 (250)
T ss_dssp             CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCC
Confidence            4788887544  567889999999999988862      34567899999999975432212111235688999899999


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~  152 (215)
                      |+||||+|+|+|+.++|              ++|.++             +.|++||++++.+. .+  ..+|+| ++++
T Consensus        84 PvlGIC~G~Qll~~~lG--------------G~V~~~-------------~~~e~G~~~v~~~~-~~--~~~~l~-g~~~  132 (250)
T 3m3p_A           84 PVIGHCLGGQLLAKAMG--------------GEVTDS-------------PHAEIGWVRAWPQH-VP--QALEWL-GTWD  132 (250)
T ss_dssp             CEEEETHHHHHHHHHTT--------------CCEEEE-------------EEEEEEEEEEEECS-SH--HHHHHH-SCSS
T ss_pred             CEEEECHHHHHHHHHhC--------------CEEEeC-------------CCCceeeEEEEEec-CC--CCcccc-cCCC
Confidence            99999999999999987              455553             24688998754311 00  135788 7765


Q ss_pred             C--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010          153 D--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT  209 (215)
Q Consensus       153 ~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~  209 (215)
                      .  ++++|++.+..++.  +.++|+|++|      .++++..++++||+|||||++.+.
T Consensus       133 ~~~v~~~H~~~v~lp~~--~~vlA~s~~~------~~~a~~~~~~~~GvQfHPE~~~~~  183 (250)
T 3m3p_A          133 ELELFEWHYQTFSIPPG--AVHILRSEHC------ANQAYVLDDLHIGFQCHIEMQAHM  183 (250)
T ss_dssp             CEEEEEEEEEEECCCTT--EEEEEEETTE------EEEEEEETTTEEEESSCTTCCHHH
T ss_pred             ccEEEEEccceeecCCC--CEEEEEeCCC------CEEEEEECCeeEEEEeCCcCCHHH
Confidence            4  56778777643332  3789999987      344444557999999999998653

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.96  E-value=3.7e-29  Score=207.38  Aligned_cols=169  Identities=12%  Similarity=0.062  Sum_probs=119.1

Q ss_pred             CEEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch---HHHHHhhCC--HHHHHHHH
Q 028010            1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT---MARLAEYHN--LFPALREF   67 (215)
Q Consensus         1 m~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~---~~~l~~~~~--l~~~i~~~   67 (215)
                      |||.||....  +...+.+++++.|+++++++.      +++++++|+|||+||+.+.   .....+...  +.++|+++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~   80 (236)
T 3l7n_A            1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKA   80 (236)
T ss_dssp             CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHH
Confidence            8999999755  455788899999999988763      3346789999999997542   222233222  57889999


Q ss_pred             HHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCcee
Q 028010           68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV  147 (215)
Q Consensus        68 ~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~  147 (215)
                      ++.++|+||||+|||+|+.++|+              ++.+.             +.+++||+++..+. .+  .++|+|
T Consensus        81 ~~~~~PvLGIClG~QlL~~~~Gg--------------~v~~~-------------~~~~~G~~~v~~~~-~~--~~~~l~  130 (236)
T 3l7n_A           81 AKSEKIIVGVCLGAQLMGVAYGA--------------DYLHS-------------PKKEIGNYLISLTE-AG--KMDSYL  130 (236)
T ss_dssp             HHTTCEEEEETHHHHHHHHHTTC--------------CCEEE-------------EEEEEEEEEEEECT-TG--GGCGGG
T ss_pred             HHcCCCEEEEchHHHHHHHHhCC--------------EEecC-------------CCceeeeEEEEEcc-Cc--ccChHH
Confidence            99999999999999999999873              33332             13567887654311 00  146888


Q ss_pred             eecCCCe--EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCC
Q 028010          148 LDVGPDV--DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTA  207 (215)
Q Consensus       148 ~~~~~~~--~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~  207 (215)
                      .+++..+  +..|++.... ++. ..++|+|++|      .+.++..++++||+|||||++.
T Consensus       131 ~~~~~~~~v~~~H~~~~~l-p~~-~~vla~s~~~------~~~a~~~~~~v~gvQfHPE~~~  184 (236)
T 3l7n_A          131 SDFSDDLLVGHWHGDMPGL-PDK-AQVLAISQGC------PRQIIKFGPKQYAFQCHLEFTP  184 (236)
T ss_dssp             TTSCSEEEEEEEEEEECCC-CTT-CEEEEECSSC------SCSEEEEETTEEEESSBSSCCH
T ss_pred             hcCCCCcEEEEecCCcccC-CCh-heEEEECCCC------CEEEEEECCCEEEEEeCCCCCH
Confidence            8887654  5556655332 332 3789999887      3455555679999999999983

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.95  E-value=7.3e-29  Score=199.94  Aligned_cols=165  Identities=16%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             CE-EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MV-VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~-v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      || |+|+++.+++.. +.++|+++|+++++++..+    ++.  ++|+||++||..+..+.. ...-..++|++ ++.++
T Consensus         1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~-~~~~~~~~i~~-~~~~~   78 (195)
T 1qdl_B            1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRE-DIGVSLDVIKY-LGKRT   78 (195)
T ss_dssp             CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHH-HHTTHHHHHHH-HTTTS
T ss_pred             CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhh-hhhHHHHHHHH-hcCCC
Confidence            77 999999888764 5789999999999887653    343  599999988754332211 11123477776 47899


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeC--ceeeec
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRA--PAVLDV  150 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~--pl~~~~  150 (215)
                      |+||||+|||+|+.++|+              ++.+.+            ..++.+|+.+..+      ..+  ++++++
T Consensus        79 PvLGIC~G~QlL~~~~gg--------------~v~~~~------------~~~~g~~~~v~~~------~~~~~~l~~~~  126 (195)
T 1qdl_B           79 PILGVCLGHQAIGYAFGA--------------KIRRAR------------KVFHGKISNIILV------NNSPLSLYYGI  126 (195)
T ss_dssp             CEEEETHHHHHHHHHTTC--------------EEEEEE------------EEEEEEEEEEEEC------CSSCCSTTTTC
T ss_pred             cEEEEehHHHHHHHHhCC--------------EEeccC------------CCcCCCceEEEEC------CCCHhHHHhcC
Confidence            999999999999999873              343321            1223445433211      133  788777


Q ss_pred             CC--CeEEEEEeeCCCCccccCCcceee-ecccCCCCCceEEEEee-C-CEEEEeeCCccCC
Q 028010          151 GP--DVDVLADYPVPSNKVLYSSSTVEI-QEENAMPEKKVIVAVRQ-G-NLLGTAFHPELTA  207 (215)
Q Consensus       151 ~~--~~~~~Hs~~~~~~~~~~~~~la~s-~~~~~~~~~~~~~~~~~-~-~v~g~QFHPE~s~  207 (215)
                      +.  .++++|++.+...++.. .++|++ +++       .+++++. + |++|+|||||++.
T Consensus       127 ~~~~~v~~~H~~~v~~l~~~~-~vla~s~~~g-------~i~a~~~~~~~~~gvQfHPE~~~  180 (195)
T 1qdl_B          127 AKEFKATRYHSLVVDEVHRPL-IVDAISAEDN-------EIMAIHHEEYPIYGVQFHPESVG  180 (195)
T ss_dssp             CSEEEEEEEEEEEEECCCTTE-EEEEEESSSC-------CEEEEEESSSSEEEESSBTTSTT
T ss_pred             CCceEEeccccchhhhCCCCc-EEEEEECCCC-------cEEEEEeCCCCEEEEecCCCCCC
Confidence            65  46778998875444332 689999 776       4566654 3 8999999999987

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.95  E-value=2e-28  Score=200.09  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=114.7

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECC---CCCCCCcCEEEEcCC-CcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~---~~~l~~~d~lil~GG-~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      |||.++++.+.|. ++.++|+++|+++++++.   ++++.++|+|||||| +.+.++.+.. ..+.   +...+.++|+|
T Consensus        14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~p~~~~~~~~~-~~l~---~~~~~~~~PiL   89 (212)
T 2a9v_A           14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKL-GSVG---KYIDDHNYPIL   89 (212)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGGH-HHHH---HHHHHCCSCEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCCCCCCcccccc-hhHH---HHHHhCCCCEE
Confidence            5999999988776 688999999999888765   455677999999999 6655443211 1122   33346899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--  153 (215)
                      |||+|+|+|+.++|              +++.+.             +.+++||+.+..+      ..++++++++..  
T Consensus        90 GIC~G~Qll~~~lG--------------g~v~~~-------------~~~~~G~~~v~~~------~~~~l~~~~~~~~~  136 (212)
T 2a9v_A           90 GICVGAQFIALHFG--------------ASVVKA-------------KHPEFGKTKVSVM------HSENIFGGLPSEIT  136 (212)
T ss_dssp             EETHHHHHHHHHTT--------------CEEEEE-------------EEEEEEEEEEEES------CCCGGGTTCCSEEE
T ss_pred             EEChHHHHHHHHhC--------------CEEEcC-------------CCcccCceeeEEC------CCChhHhcCCCceE
Confidence            99999999999986              344432             1246788655421      256788887653  


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCC
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTA  207 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~  207 (215)
                      +++.|++.+...++.. .++|+++++       .+++++  .++++|+|||||++.
T Consensus       137 v~~~H~~~v~~l~~~~-~vlA~s~d~-------~i~ai~~~~~~i~gvQfHPE~~~  184 (212)
T 2a9v_A          137 VWENHNDEIINLPDDF-TLAASSATC-------QVQGFYHKTRPIYATQFHPEVEH  184 (212)
T ss_dssp             EEEEEEEEEESCCTTE-EEEEECSSC-------SCSEEEESSSSEEEESSCTTSTT
T ss_pred             EEeEhhhhHhhCCCCc-EEEEEeCCC-------CEEEEEECCCCEEEEEeCCCCCC
Confidence            5677777764444332 688999876       344544  358999999999986

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.95  E-value=1.1e-27  Score=194.69  Aligned_cols=174  Identities=21%  Similarity=0.240  Sum_probs=124.6

Q ss_pred             CEEEEEecCCCh--HHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHH----HHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMA----RLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~--~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~----~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      |||+||.+++..  .++.++|+++|++++++...+++.++|+||+|||.+....    .+.+...+.++|++++++++|+
T Consensus         3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pi   82 (213)
T 3d54_D            3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLI   82 (213)
T ss_dssp             CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEE
T ss_pred             cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCCCcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEE
Confidence            499999998864  5789999999999999987677889999999998542211    1222356789999999999999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      ||||+|+|+|+.+            |++++++.+++.+          +. ++||+.++...     ..+++++++++  
T Consensus        83 lgIC~G~qlLa~a------------Gll~g~v~~~~~~----------~~-~~g~~~v~~~~-----~~~~l~~~~~~~~  134 (213)
T 3d54_D           83 MGICNGFQILIEM------------GLLKGALLQNSSG----------KF-ICKWVDLIVEN-----NDTPFTNAFEKGE  134 (213)
T ss_dssp             EECHHHHHHHHHH------------TSSCSEEECCSSS----------SC-BCCEEEEEECC-----CSSTTSTTSCTTC
T ss_pred             EEECHHHHHHHHc------------CCCCCCeecCCCC----------ce-EeeeEEEEeCC-----CCCceeeccCCCC
Confidence            9999999999997            3444677765311          11 67887654310     25688888864  


Q ss_pred             CeEE--EE---EeeCCCCccccCCcceeeecccCCCCC-ceEEEE-e-eCCEEEEeeCCccCCC
Q 028010          153 DVDV--LA---DYPVPSNKVLYSSSTVEIQEENAMPEK-KVIVAV-R-QGNLLGTAFHPELTAD  208 (215)
Q Consensus       153 ~~~~--~H---s~~~~~~~~~~~~~la~s~~~~~~~~~-~~~~~~-~-~~~v~g~QFHPE~s~~  208 (215)
                      .+++  +|   +|...+ +.  ..++|++++.   ++. ..++++ . ++++||+|||||++.+
T Consensus       135 ~~~~~~~H~~~s~~~~~-~~--~~~~a~~~~~---ng~~~~i~a~~~~~~~~~gvQfHPE~~~~  192 (213)
T 3d54_D          135 KIRIPIAHGFGRYVKID-DV--NVVLRYVKDV---NGSDERIAGVLNESGNVFGLMPHPERAVE  192 (213)
T ss_dssp             EEEEECCBSSCEEECSS-CC--EEEEEESSCS---SCCGGGEEEEECSSSCEEEECSCSTTTTS
T ss_pred             EEEEEeecCceEEEecC-CC--cEEEEEcCCC---CCCccceeEEEcCCCCEEEEeCCHHHhcC
Confidence            5777  78   887643 22  2677888762   010 134444 3 5799999999999873

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.95  E-value=4.7e-28  Score=194.04  Aligned_cols=161  Identities=18%  Similarity=0.204  Sum_probs=114.9

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      |.|+|+++.+.+. ++.++|+++|+++++++..+   ++  .++|+||+|||. +. ..   ...+.++|+++.+.++|+
T Consensus         1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~-~~---~~~~~~~i~~~~~~~~Pi   75 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SL-EN---TGNCEKVLEHYDEFNVPI   75 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CT-TC---CTTHHHHHHTGGGTCSCE
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-Ch-hh---hhhHHHHHHHHhhCCCeE
Confidence            6799999987654 67899999999999887654   33  259999999997 32 11   123467888776889999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV  154 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~  154 (215)
                      ||||+|+|+|+.++|              +++.+.             +.+++||+.+...      ..+++|.++++.+
T Consensus        76 lGIC~G~Q~l~~~~g--------------g~v~~~-------------~~~~~G~~~~~~~------~~~~l~~~~~~~~  122 (189)
T 1wl8_A           76 LGICLGHQLIAKFFG--------------GKVGRG-------------EKAEYSLVEIEII------DEXEIFKGLPKRL  122 (189)
T ss_dssp             EEETHHHHHHHHHHT--------------CEEEEC-------------SCCSCEEEEEEES------CC--CCTTSCSEE
T ss_pred             EEEcHHHHHHHHHhC--------------CceecC-------------CCcccCceeEEEe------cCchHHhCCCCce
Confidence            999999999999997              344442             2346788644321      2567888777777


Q ss_pred             EEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEe-eCC-EEEEeeCCccCC
Q 028010          155 DVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVR-QGN-LLGTAFHPELTA  207 (215)
Q Consensus       155 ~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~-v~g~QFHPE~s~  207 (215)
                      .+.|+|.+..  .++. ..++|+++++       .+++++ +++ ++|+|||||++.
T Consensus       123 ~~~~~h~~~v~~l~~~-~~vla~s~~g-------~i~a~~~~~~~~~gvQfHPE~~~  171 (189)
T 1wl8_A          123 KVWESHMDEVKELPPK-FKILARSETC-------PIEAMKHEELPIYGVQFHPEVAH  171 (189)
T ss_dssp             EEEECCSEEEEECCTT-EEEEEEESSC-------SCSEEEESSSCEEEESSCTTSTT
T ss_pred             EEEEEeeeehhhCCCC-cEEEEEcCCC-------CEEEEEeCCceEEEEecCCCcCC
Confidence            8888886532  2332 2688999876       344444 444 999999999976

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.94  E-value=2.3e-27  Score=197.12  Aligned_cols=163  Identities=15%  Similarity=0.066  Sum_probs=116.2

Q ss_pred             EEEEEec--CCChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch-----HHHHHhhCCHHHHHHHHH
Q 028010            2 VVGVLAL--QGSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREFV   68 (215)
Q Consensus         2 ~v~il~~--~G~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~-----~~~l~~~~~l~~~i~~~~   68 (215)
                      ||.||..  ..+..++.++|+..|++++++..      ++++.++|+||+|||+.+.     ++++.   .+.++|++++
T Consensus        14 ~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~---~~~~~i~~~~   90 (239)
T 1o1y_A           14 RVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK---YEFQLIEEIL   90 (239)
T ss_dssp             EEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH---HHHHHHHHHH
T ss_pred             EEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH---HHHHHHHHHH
Confidence            5666665  23566889999999999986642      2345679999999986433     33332   3578899998


Q ss_pred             HcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceee
Q 028010           69 KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL  148 (215)
Q Consensus        69 ~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~  148 (215)
                      +.++|+||||+|||+|+.++|              +++.+++.            -+++||+.+...      ..+++++
T Consensus        91 ~~~~PiLGIC~G~QlL~~alG--------------G~v~~~~~------------g~~~G~~~v~~~------~~~~l~~  138 (239)
T 1o1y_A           91 KKEIPFLGICLGSQMLAKVLG--------------ASVYRGKN------------GEEIGWYFVEKV------SDNKFFR  138 (239)
T ss_dssp             HHTCCEEEETHHHHHHHHHTT--------------CCEEECTT------------CCEEEEEEEEEC------CCCGGGT
T ss_pred             HCCCCEEEEchhHHHHHHHcC--------------CeEecCCC------------CCccccEEEEEC------CCCchHH
Confidence            899999999999999999986              34544321            156788655421      3568888


Q ss_pred             ecCCC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          149 DVGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       149 ~~~~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      ++++.  ++++|++.+..++.  ..++|+++++       .+++++.++++|+|||||++.+
T Consensus       139 ~~~~~~~~~~~H~~~v~lp~~--~~vlA~s~~~-------~iea~~~~~i~gvQfHPE~~~~  191 (239)
T 1o1y_A          139 EFPDRLRVFQWHGDTFDLPRR--ATRVFTSEKY-------ENQGFVYGKAVGLQFHIEVGAR  191 (239)
T ss_dssp             TSCSEEEEEEEESEEECCCTT--CEEEEECSSC-------SCSEEEETTEEEESSBSSCCHH
T ss_pred             hCCCCceeEeecCCccccCCC--CEEEEEcCCC-------CEEEEEECCEEEEEeCccCCHH
Confidence            88654  56667776643332  2788999876       3557777779999999999864

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.93  E-value=3.1e-27  Score=193.80  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=109.1

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+||++.+.+. ++.++|+++|++++++....   ++  .++|+||+|||+.+.+... . ..+   .+...+.++|+|
T Consensus        26 ~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~-~-~~~---~~~~~~~~~Pil  100 (218)
T 2vpi_A           26 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAED-A-PWF---DPAIFTIGKPVL  100 (218)
T ss_dssp             CEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC----------C-CCC---CGGGGTSSCCEE
T ss_pred             eEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCccccccc-c-hhH---HHHHHHcCCCEE
Confidence            799999987654 68899999999998887533   23  3599999999976543211 1 111   223346799999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--C
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~  153 (215)
                      |||+|+|+|+.++|+              ++.+++             .+++||+.+..+      ..++++++++.  .
T Consensus       101 GIC~G~Qll~~~~GG--------------~v~~~~-------------~~~~G~~~v~~~------~~~~l~~~l~~~~~  147 (218)
T 2vpi_A          101 GICYGMQMMNKVFGG--------------TVHKKS-------------VREDGVFNISVD------NTCSLFRGLQKEEV  147 (218)
T ss_dssp             EETHHHHHHHHHTTC--------------CEEEEE-------------ECSCEEEEEEEC------TTSGGGTTCCSEEE
T ss_pred             EEcHHHHHHHHHhCC--------------ceEeCC-------------CCcccEEEEEEc------cCChhHhcCCCCcE
Confidence            999999999999862              344421             246788765421      25688888865  4


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCC
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTA  207 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~  207 (215)
                      ++++|++.+...++.. .++|+++        .++++++  +++++|+|||||++.
T Consensus       148 v~~~H~~~v~~l~~~~-~vlA~s~--------~~i~ai~~~~~~i~gvQfHPE~~~  194 (218)
T 2vpi_A          148 VLLTHGDSVDKVADGF-KVVARSG--------NIVAGIANESKKLYGAQFHPEVGL  194 (218)
T ss_dssp             EEECSEEEESSCCTTC-EEEEEET--------TEEEEEEETTTTEEEESSCTTSTT
T ss_pred             EeehhhhHhhhcCCCC-EEEEEcC--------CeEEEEEECCCCEEEEEcCCCCCC
Confidence            6778888876544432 6788883        2678877  679999999999986

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.93  E-value=2.5e-26  Score=184.58  Aligned_cols=159  Identities=17%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCCCCC---------CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHc
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQLQ---------NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~~l~---------~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~   70 (215)
                      +||+|+++.+++. ++.++|+++|+++++++...+++         +.|++|++||..+..+     .++...+.+.++.
T Consensus         1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~-----~~~~~~l~~~~~~   75 (192)
T 1i1q_B            1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE-----AGCMPELLTRLRG   75 (192)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG-----STTHHHHHHHHBT
T ss_pred             CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh-----CchHHHHHHHHhc
Confidence            5899999988876 46899999999999987653221         2446888887655332     1223334445678


Q ss_pred             CCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010           71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (215)
Q Consensus        71 ~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~  150 (215)
                      ++|+||||+|||+|+.++|+.              +.+.+             .+..|+....    .  ...+++|+++
T Consensus        76 ~~PilGIC~G~Qll~~~~Gg~--------------v~~~~-------------~~~~g~~~~~----~--~~~~~l~~~~  122 (192)
T 1i1q_B           76 KLPIIGICLGHQAIVEAYGGY--------------VGQAG-------------EILHGKATSI----E--HDGQAMFAGL  122 (192)
T ss_dssp             TBCEEEETHHHHHHHHHTSCC--------------CCC----------------CCSSEEEEE----E--ECCCGGGTTS
T ss_pred             CCCEEEECcChHHHHHHhCCE--------------EEeCC-------------CcEecceeEE----e--cCCChHHhcC
Confidence            999999999999999999742              11100             0112221100    0  0245777777


Q ss_pred             CCC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccC
Q 028010          151 GPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELT  206 (215)
Q Consensus       151 ~~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s  206 (215)
                      ++.  ++++|++.+...++.. .++|+++        ..+++++  ++|+||+|||||++
T Consensus       123 ~~~~~v~~~H~~~v~~lp~~~-~v~a~~~--------~~~~ai~~~~~~~~gvQfHPE~~  173 (192)
T 1i1q_B          123 ANPLPVARYHSLVGSNVPAGL-TINAHFN--------GMVMAVRHDADRVCGFQFHPESI  173 (192)
T ss_dssp             CSSEEEEECCC---CCCCTTC-EEEEEET--------TEEEEEEETTTTEEEESSBTTST
T ss_pred             CCCcEEEechhhHhhhCCCcc-EEEECCC--------CcEEEEEECCCCEEEEEccCccc
Confidence            554  6777888775544432 6777543        3567776  67999999999998

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.93  E-value=9.3e-26  Score=207.59  Aligned_cols=190  Identities=16%  Similarity=0.183  Sum_probs=122.9

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCC--CcCEEEEcCCCcchHHHHHhhCCH-HHHHHHHHHcCCc
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNL-FPALREFVKMGKP   73 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~--~~d~lil~GG~~~~~~~l~~~~~l-~~~i~~~~~~~~P   73 (215)
                      +||+||+|...|. ++.++|+++|+.++++...   +++.  ++|+||+|||+.+.+..-.  ..+ ...++.+.+.++|
T Consensus         8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~--~~~~~~l~~~a~~~g~P   85 (556)
T 3uow_A            8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGS--PHLKKEVFEYFLEKKIP   85 (556)
T ss_dssp             CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTC--CCCCHHHHHHHHHTTCC
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCC--cchhHHHHHHhhhcCCC
Confidence            3899999987666 7889999999998887632   3443  6899999999865432211  112 2344555667999


Q ss_pred             EEEEehHHHHHHHhhccCCC-CCccccceeeeEEEeccC---CCcceeeeeecccCcccC--CCCCCcceeeeeeeCcee
Q 028010           74 VWGTCAGLIFLANKAVGQKL-GGQELVGGLDCTVHRNFF---GSQIQSFEAELSVPALAS--QEGGPETFRGVFIRAPAV  147 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~-~~~~~lG~~~~~v~~~~~---~~~~~~~~~~~~~p~~Gw--~~~~~~~~~~~~~~~pl~  147 (215)
                      +||||+|||+|+.++|+... ......|..+..+.....   ..-+..|+.  ..|+|||  |.+..   .   ..+++|
T Consensus        86 vLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~--~~~~mg~~~n~~~~---~---~~~~Lf  157 (556)
T 3uow_A           86 IFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGD--SSSAMDLYSNYKLM---N---ETCCLF  157 (556)
T ss_dssp             EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC-----CCHHHHHTTSCCC---C-----CGGG
T ss_pred             EEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccc--cccccccccccccc---c---ccchhh
Confidence            99999999999999875311 011223443333332110   000111211  1268899  44432   1   367899


Q ss_pred             eec-CC--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010          148 LDV-GP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD  208 (215)
Q Consensus       148 ~~~-~~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~  208 (215)
                      +++ +.  .+++.|++.+...|+.. .++|+|+++       .+++++.  +|+||+|||||++++
T Consensus       158 ~gl~~~~~~v~~~H~d~V~~lp~g~-~vlA~s~~~-------~i~ai~~~~~~i~GvQFHPE~~~~  215 (556)
T 3uow_A          158 ENIKSDITTVWMNHNDEVTKIPENF-YLVSSSENC-------LICSIYNKEYNIYGVQYHPEVYES  215 (556)
T ss_dssp             TTCCSSEEEEEEEEEEEEEECCTTC-EEEEEETTE-------EEEEEEETTTTEEEESSCTTSTTS
T ss_pred             cccccCceEEEEEccceeeccCCCc-EEEEEeCCC-------CEEEEEECCCCEEEEEcCCCCCcc
Confidence            998 55  46778888775555433 689999886       4566654  699999999999986

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.92  E-value=4.4e-26  Score=208.73  Aligned_cols=161  Identities=19%  Similarity=0.250  Sum_probs=110.7

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEEC---CCCCCCC--cCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIR---KPDQLQN--VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~---~~~~l~~--~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+||+|...|. ++.++|+++|+.++++.   ..+++.+  +|+||+|||+.+.++.-     .....+...+.++|+|
T Consensus        12 ~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~~-----~~~~~~~~~~~~~PvL   86 (527)
T 3tqi_A           12 RILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSH-----TLRAPAFIFEIGCPVL   86 (527)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC--------------CCCSTTTSSSCEE
T ss_pred             eEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccCC-----ChhhHHHHHhcCCCEE
Confidence            899999988776 67899999999988874   3345554  49999999987654321     1122344556899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC---
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP---  152 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~---  152 (215)
                      |||+|||+|+.++|+              +|.+.             +.+++||+.+...      ..+++|++++.   
T Consensus        87 GIC~G~Qlla~~lGG--------------~V~~~-------------~~~e~G~~~v~~~------~~~~l~~~l~~~~~  133 (527)
T 3tqi_A           87 GICYGMQTMAYQLGG--------------KVNRT-------------AKAEFGHAQLRVL------NPAFLFDGIEDQVS  133 (527)
T ss_dssp             EETHHHHHHHHHSSS--------------CBC------------------CEEEEEEEES------SCTTTTSSCCSBCC
T ss_pred             EEChHHHHHHHHcCC--------------eEEeC-------------CCccccceEEEEc------CCChhhcCCccccc
Confidence            999999999999873              33322             1346787654421      24678888865   


Q ss_pred             -------CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          153 -------DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       153 -------~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                             .+++.|++.+...|+.. .++|+|+.+       .+++++  .+++||+|||||+++.
T Consensus       134 ~~~~~~~~v~~~H~d~v~~lp~g~-~v~A~s~~~-------~i~ai~~~~~~~~GvQFHPE~~~t  190 (527)
T 3tqi_A          134 PQGEPLLDVWMSHGDIVSELPPGF-EATACTDNS-------PLAAMADFKRRFFGLQFHPEVTHT  190 (527)
T ss_dssp             TTSCCEEEEEEESSSCBCSCCTTC-EEEEEETTE-------EEEEEECSSSCEEEESBCSSSTTS
T ss_pred             cccccceEEEEEcccchhccCCCC-EEEEEeCCC-------cEEEEEcCCCCEEEEEeccccccc
Confidence                   35667777766555543 788999865       566665  4689999999999875

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.91  E-value=4.7e-26  Score=208.45  Aligned_cols=162  Identities=18%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      +||+||+|.+.|. ++.++|+++|+.++++...   +++.  ++|+||||||+.+.++...  ..+.   +...+.++|+
T Consensus         8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~--~~~~---~~~~~~g~Pv   82 (525)
T 1gpm_A            8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENS--PRAP---QYVFEAGVPV   82 (525)
T ss_dssp             SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTC--CCCC---GGGGTSSSCE
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCC--cchH---HHHHHCCCCE
Confidence            3799999988777 5779999999998887533   2343  3599999999876554321  1122   3344679999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--  152 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--  152 (215)
                      ||||+|||+|+.++|              ++|.+.+             .+++||+.+...      ..+++|++++.  
T Consensus        83 LGIC~G~Qlla~~~G--------------G~V~~~~-------------~~e~G~~~v~~~------~~~~L~~~l~~~~  129 (525)
T 1gpm_A           83 FGVCYGMQTMAMQLG--------------GHVEASN-------------EREFGYAQVEVV------NDSALVRGIEDAL  129 (525)
T ss_dssp             EEETHHHHHHHHHHT--------------CEEECCS-------------SCEEEEEEEEEC------SCCTTTTTCCSEE
T ss_pred             EEEChHHHHHHHHcC--------------CEEEeCC-------------CcccceEEEEeC------CCCHhhccCcccc
Confidence            999999999999997              3454421             346677654321      24578887754  


Q ss_pred             --------CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          153 --------DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       153 --------~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                              .+++.|++.+...++.. .++|+|+++       .+++++  ++++||+|||||++..
T Consensus       130 ~~~~~~~~~v~~~H~~~V~~lp~g~-~v~A~s~~~-------~i~ai~~~~~~i~gvQFHPE~~~~  187 (525)
T 1gpm_A          130 TADGKPLLDVWMSHGDKVTAIPSDF-ITVASTESC-------PFAIMANEEKRFYGVQFHPEVTHT  187 (525)
T ss_dssp             CTTSCEEEEEEEEECSEEEECCTTC-EEEEECSSC-------SCSEEEETTTTEEEESBCTTSTTS
T ss_pred             ccccccceEEEEEccceeeeCCCCC-EEEEECCCC-------CEEEEEECCCCEEEEecCCCCCcc
Confidence                    35677887775544433 789999876       345555  4699999999999875

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.91  E-value=1.1e-24  Score=182.35  Aligned_cols=168  Identities=16%  Similarity=0.253  Sum_probs=109.3

Q ss_pred             HHHHHHHHHCCCeEEEECCCCC------CCCcCEEEEcCCCc---chHHH-----H-----HhhCCHHHHHHHHHHcCCc
Q 028010           13 NEHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES---TTMAR-----L-----AEYHNLFPALREFVKMGKP   73 (215)
Q Consensus        13 ~s~~~~l~~~G~~v~~~~~~~~------l~~~d~lil~GG~~---~~~~~-----l-----~~~~~l~~~i~~~~~~~~P   73 (215)
                      .++.++|+++|..++++....+      ++++|+|||+||.+   ..+..     +     .......++|++++++++|
T Consensus        31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~P  110 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKP  110 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchHHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCC
Confidence            3678999999999888875432      45899999999953   21110     0     0001146789999999999


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~  153 (215)
                      +||||+|||+|+.++|+.   -.+.++.+++....+        .  ....+++||+.+...      ..+++++.++..
T Consensus       111 iLGIC~G~Qll~~a~Gg~---v~~~~~~~~~~~~~h--------~--~~~~~~~g~~~v~~~------~~s~l~~~~~~~  171 (254)
T 3fij_A          111 IFAICRGMQLVNVALGGT---LYQDISQVETKALQH--------L--QRVDEQLGSHTIDIE------PTSELAKHHPNK  171 (254)
T ss_dssp             EEEETHHHHHHHHHTTCC---EESSGGGSSSCCCCC--------B--CCSCTTSCCEEEEEC------TTSSGGGTCCTT
T ss_pred             EEEECHHHHHHHHHhCCc---eecccccccCccccc--------c--CCCCCccceEEEEeC------CCChHHHhcCCc
Confidence            999999999999998742   123333332211111        0  012467898766531      256777777654


Q ss_pred             eEEEEEe---eCCCCccccCCcceeeecccCCCCCceEEEEeeC----CEEEEeeCCccCCC
Q 028010          154 VDVLADY---PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG----NLLGTAFHPELTAD  208 (215)
Q Consensus       154 ~~~~Hs~---~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~----~v~g~QFHPE~s~~  208 (215)
                       +.+|++   .+...++.. .++|+++++       .+++++.+    +++|+|||||++..
T Consensus       172 -~~v~~~H~~~v~~l~~g~-~v~a~s~dg-------~ieai~~~~~~~~~~gvQfHPE~~~~  224 (254)
T 3fij_A          172 -KLVNSLHHQFIKKLAPSF-KVTARTADG-------MIEAVEGDNLPSWYLGVQWHPELMFQ  224 (254)
T ss_dssp             -EEECCBCSCEESSCCSSE-EEEEEETTC-------CEEEEEESSCSSCEEEESSCGGGTGG
T ss_pred             -EEEEEeccchhhccCCCc-EEEEEeCCC-------cEEEEEecCCCCeEEEEEcCCccCCC
Confidence             444444   333333332 688999876       67788766    69999999999874

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.91  E-value=1.5e-25  Score=204.12  Aligned_cols=160  Identities=19%  Similarity=0.264  Sum_probs=113.1

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      .|+||+|.+.|. ++.++|+++|+.++++...   +++.  ++|+||++||+.+.++...  ..+.   +...+.++|+|
T Consensus         1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~--~~~~---~~~~~~~~PvL   75 (503)
T 2ywb_A            1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA--PRPD---PRLFSSGLPLL   75 (503)
T ss_dssp             CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTC--CCCC---GGGGCSSCCEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCC--cchH---HHHHhCCCCEE
Confidence            199999988776 6889999999988887532   2333  3599999999876543321  1111   33346799999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--C
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--D  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~  153 (215)
                      |||+|||+|+.++|              ++|.+.             +.+++||+.+..       ..+++|++++.  .
T Consensus        76 GIC~G~Qlla~~~G--------------G~v~~~-------------~~~e~G~~~v~~-------~~~~l~~~~~~~~~  121 (503)
T 2ywb_A           76 GICYGMQLLAQELG--------------GRVERA-------------GRAEYGKALLTR-------HEGPLFRGLEGEVQ  121 (503)
T ss_dssp             EETHHHHHHHHTTT--------------CEEECC----------------CEEEEECSE-------ECSGGGTTCCSCCE
T ss_pred             EECHHHHHHHHHhC--------------CeEeeC-------------CCCccceEEEEe-------cCcHHhhcCCCccE
Confidence            99999999999986              345442             135778876653       13788888864  4


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD  208 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~  208 (215)
                      +++.|++.+...++.. .++|+|+++       .+++++  ++++||+|||||++.+
T Consensus       122 v~~~H~~~v~~lp~g~-~v~A~s~~~-------~i~ai~~~~~~~~gvQFHPE~~~~  170 (503)
T 2ywb_A          122 VWMSHQDAVTAPPPGW-RVVAETEEN-------PVAAIASPDGRAYGVQFHPEVAHT  170 (503)
T ss_dssp             EEEECSCEEEECCTTC-EEEEECSSC-------SCSEEECTTSSEEEESBCTTSTTS
T ss_pred             EEEECCCccccCCCCC-EEEEEECCC-------CEEEEEeCCCCEEEEecCCCcccc
Confidence            6777777765444433 789999876       445555  4689999999999975

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.90  E-value=2.4e-23  Score=182.91  Aligned_cols=153  Identities=15%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      +||+|+++ |.-.++.++|+++|++++++....   ++  .++|+|||+||+.+..+.    ....+.|++++++++|+|
T Consensus       191 ~~V~viD~-G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~----~~~~~~Ir~~~~~~~PIL  265 (379)
T 1a9x_B          191 FHVVAYDF-GAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC----DYAITAIQKFLETDIPVF  265 (379)
T ss_dssp             EEEEEEES-SCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC----HHHHHHHHHHTTSCCCEE
T ss_pred             CEEEEEEC-CChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH----HHHHHHHHHHHHcCCCEE
Confidence            37999999 655779999999999999886432   22  369999999997654321    123678899888899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC-CCe
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG-PDV  154 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~-~~~  154 (215)
                      |||+|||+|+.++|+              ++.+++             .++.||+             +|+. .++ ..+
T Consensus       266 GIClG~QLLa~A~GG--------------~v~k~~-------------~gh~g~n-------------~pv~-~~~~g~v  304 (379)
T 1a9x_B          266 GICLGHQLLALASGA--------------KTVKMK-------------FGHHGGN-------------HPVK-DVEKNVV  304 (379)
T ss_dssp             EETHHHHHHHHHTTC--------------CEEEEE-------------EEEEEEE-------------EEEE-ETTTTEE
T ss_pred             EECchHHHHHHHhCc--------------EEEecc-------------cccccCc-------------eeeE-ecCCCcE
Confidence            999999999999973              344432             2344542             2222 222 233


Q ss_pred             EE---EEEeeCCC--CccccCCcceee-ecccCCCCCceEEEEe--eCCEEEEeeCCccCC
Q 028010          155 DV---LADYPVPS--NKVLYSSSTVEI-QEENAMPEKKVIVAVR--QGNLLGTAFHPELTA  207 (215)
Q Consensus       155 ~~---~Hs~~~~~--~~~~~~~~la~s-~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~  207 (215)
                      ++   .|+|.+..  .++.. .+++.+ +.+       .+++++  +.++||+|||||++.
T Consensus       305 ~its~~H~~aV~~~~Lp~~~-~v~a~s~~Dg-------~ieai~~~~~pi~gVQFHPE~~~  357 (379)
T 1a9x_B          305 MITAQNHGFAVDEATLPANL-RVTHKSLFDG-------TLQGIHRTDKPAFSFQGNPEASP  357 (379)
T ss_dssp             EEEEEEEEEEECSTTCCTTE-EEEEEETTTC-------CEEEEEESSSSEEEESSCTTCSS
T ss_pred             EEEecCccceEecccCCCCe-EEEEEeCCCC-------cEEEEEECCCCEEEEEeCCcCCC
Confidence            43   68887753  33322 567776 332       466665  458999999999987

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.88  E-value=2.2e-23  Score=194.37  Aligned_cols=164  Identities=15%  Similarity=0.138  Sum_probs=112.6

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcCCCcchH----HHHHhhCCHHHHHHHHHHcCCc
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTM----ARLAEYHNLFPALREFVKMGKP   73 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~GG~~~~~----~~l~~~~~l~~~i~~~~~~~~P   73 (215)
                      |+|.|+++.+.+. ++.++|+++|++++++...  .++.++|+|||+||+.+..    .++   ..+.++|+.+++.++|
T Consensus       447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~~~~~DgIIlsGGPg~p~d~~~p~i---~~~~~lI~~a~~~~iP  523 (645)
T 3r75_A          447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRI---ARLYAWLRHLIDEGKP  523 (645)
T ss_dssp             CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCCGGGCSEEEECCCSSCTTCTTSHHH---HHHHHHHHHHHHHTCC
T ss_pred             CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCcccccCCCEEEECCCCCChhhhhhhhH---HHHHHHHHHHHHCCCC
Confidence            5899999988776 6789999999999888643  3456799999999865422    233   2346788888889999


Q ss_pred             EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~  153 (215)
                      +||||+|||+|+.++|+              +|.+.             +.++.||+....      ...++++.+++..
T Consensus       524 iLGIClG~QlLa~alGG--------------~V~~~-------------~~~~~G~~~~i~------~~~~~l~~~~~~~  570 (645)
T 3r75_A          524 FMAVCLSHQILNAILGI--------------PLVRR-------------EVPNQGIQVEID------LFGQRERVGFYNT  570 (645)
T ss_dssp             EEEETHHHHHHHHHTTC--------------CEEEE-------------EEEEEEEEEEEE------ETTEEEEEEEEEE
T ss_pred             EEEECHHHHHHHHHhCC--------------EEEcC-------------CCcccccceEEe------eecCcceecCCCc
Confidence            99999999999999973              33332             123456542110      0134566665443


Q ss_pred             eEE--EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          154 VDV--LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       154 ~~~--~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      +.+  .|...+...+.. ..++|+|++|       .+++++++++||+|||||++..
T Consensus       571 ~~v~~~h~~~~~~lp~g-~~v~A~s~dg-------~i~Ai~~~~~~GVQFHPE~~~t  619 (645)
T 3r75_A          571 YVAQTVRDEMDVDGVGT-VAISRDPRTG-------EVHALRGPTFSSMQFHAESVLT  619 (645)
T ss_dssp             EEEBCSCSEEEETTTEE-EEEEECTTTC-------BEEEEEETTEEEESSBTTSTTC
T ss_pred             EEEEEehhhccccCCCC-eEEEEEcCCC-------cEEEEEcCCEEEEEeCCeecCC
Confidence            333  232222222332 2688988875       7889999999999999999764

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.87  E-value=2.3e-23  Score=176.21  Aligned_cols=182  Identities=14%  Similarity=0.141  Sum_probs=111.4

Q ss_pred             EEEEE-ec----CCChHHHHHHHHHCC----CeEEEEC--CC-----------CCCCCcCEEEEcCCCcchHHHHHhhCC
Q 028010            2 VVGVL-AL----QGSFNEHIAALKRLG----VKGVEIR--KP-----------DQLQNVSSLIIPGGESTTMARLAEYHN   59 (215)
Q Consensus         2 ~v~il-~~----~G~~~s~~~~l~~~G----~~v~~~~--~~-----------~~l~~~d~lil~GG~~~~~~~l~~~~~   59 (215)
                      ||+|+ .+    .+||.|+.++|+++|    +++.++.  ..           +.+.++|+||+|||+.+.  ...   +
T Consensus        10 ~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~--~~~---~   84 (273)
T 2w7t_A           10 RIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR--GVD---G   84 (273)
T ss_dssp             EEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT--THH---H
T ss_pred             EEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc--Cch---h
Confidence            78998 66    789999998887665    4455542  11           124579999999997542  121   3


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCC----C---------ccccceeeeEEEeccCCCcceeeeeecccCc
Q 028010           60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLG----G---------QELVGGLDCTVHRNFFGSQIQSFEAELSVPA  126 (215)
Q Consensus        60 l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~----~---------~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~  126 (215)
                      ..++++.+.+.++|+||||+|||+|+.++|+...+    .         .+.+++++..+.+         +.   ...+
T Consensus        85 ~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~---------~~---~~~~  152 (273)
T 2w7t_A           85 KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNK---------MG---ANMH  152 (273)
T ss_dssp             HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCS---------SC---BCCE
T ss_pred             HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccc---------cC---Cccc
Confidence            46788888888999999999999999988753210    0         1122222211110         00   0125


Q ss_pred             ccCCCCCCcceeeeeeeCceeeecCC--CeEE--EEEeeCCCC------ccccCCcceeeecccCCCCC-ceEEEEeeC-
Q 028010          127 LASQEGGPETFRGVFIRAPAVLDVGP--DVDV--LADYPVPSN------KVLYSSSTVEIQEENAMPEK-KVIVAVRQG-  194 (215)
Q Consensus       127 ~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~--~Hs~~~~~~------~~~~~~~la~s~~~~~~~~~-~~~~~~~~~-  194 (215)
                      +||+++....     ..++++..++.  .+++  .|||.+.+.      ++. ..++|++++++   +. .++++++.+ 
T Consensus       153 ~g~~~v~~~~-----~~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g-~~v~A~s~d~~---~~g~~ieaie~~~  223 (273)
T 2w7t_A          153 LGACDVYIVE-----KSSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAG-LCISAVTDPTF---SSRCRVEAVENPS  223 (273)
T ss_dssp             EEEEEEEECC-----TTSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTT-CEEEEESCTTC---CTTCCEEEEECTT
T ss_pred             ccceEEEEec-----CCcHHHHHhCCCceEEeecccccccCHHHHHhhccCC-cEEEEEcCCcC---CCCCeEEEEEcCC
Confidence            7887654210     13455544442  4666  456666432      222 26789988720   00 378888865 


Q ss_pred             --CEEEEeeCCccCCCC
Q 028010          195 --NLLGTAFHPELTADT  209 (215)
Q Consensus       195 --~v~g~QFHPE~s~~~  209 (215)
                        +++|+|||||++...
T Consensus       224 ~p~~~GvQfHPE~~~~~  240 (273)
T 2w7t_A          224 LRFFLAVQFHPEFISTP  240 (273)
T ss_dssp             SSSEEEESSCGGGSCBT
T ss_pred             CCeEEEEeCCCCcCCCC
Confidence              477999999998754

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.87  E-value=1.3e-22  Score=174.84  Aligned_cols=170  Identities=19%  Similarity=0.333  Sum_probs=106.3

Q ss_pred             EEEEEecCCCh------------HHHHHHHHHCCCeEEEECCCCC-------CCCcCEEEEcCCCcc----hHHHHHhhC
Q 028010            2 VVGVLALQGSF------------NEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGEST----TMARLAEYH   58 (215)
Q Consensus         2 ~v~il~~~G~~------------~s~~~~l~~~G~~v~~~~~~~~-------l~~~d~lil~GG~~~----~~~~l~~~~   58 (215)
                      +|||+...+..            .++.++|+++|++++++....+       ++++|+||||||..+    .+..+.  .
T Consensus        32 ~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~--~  109 (315)
T 1l9x_A           32 IIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVA--K  109 (315)
T ss_dssp             EEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHH--H
T ss_pred             EEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHH--H
Confidence            68888764432            2678999999999999876432       247899999998643    233322  2


Q ss_pred             CHHHHHHHHHHc--CCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcc
Q 028010           59 NLFPALREFVKM--GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPET  136 (215)
Q Consensus        59 ~l~~~i~~~~~~--~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~  136 (215)
                      .+.+.++++.++  ++|+||||+|||+|+.++|+.     ..++..+. ...              ..|.. .  +..  
T Consensus       110 ~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~-----~~~~~~~~-~g~--------------~~p~~-~--~~~--  164 (315)
T 1l9x_A          110 IFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE-----CLLTATDT-VDV--------------AMPLN-F--TGG--  164 (315)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSS-----CCCEEEEE-EEE--------------EECCE-E--CST--
T ss_pred             HHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCc-----cccccccc-cCC--------------CCCee-e--ccC--
Confidence            355666666655  499999999999999999752     11111100 000              01110 0  000  


Q ss_pred             eeeeeeeCceeeecC----------CCeEEEEEeeCC--------CCccccCCcceeeecccCCCCCceEEEEee--CCE
Q 028010          137 FRGVFIRAPAVLDVG----------PDVDVLADYPVP--------SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNL  196 (215)
Q Consensus       137 ~~~~~~~~pl~~~~~----------~~~~~~Hs~~~~--------~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v  196 (215)
                       .   ..++++++++          ..++.+|++.+.        ..++.. .++|+++++    ..+++++++.  .++
T Consensus       165 -~---~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~-~v~A~s~dg----~ve~i~~i~~~~~~i  235 (315)
T 1l9x_A          165 -Q---LHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFF-NVLTTNTDG----KIEFISTMEGYKYPV  235 (315)
T ss_dssp             -T---TTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHE-EEEEEEESS----SCEEEEEEEESSSCE
T ss_pred             -C---CCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCC-EEEEEcCCC----CEEEEEEeccCCCCE
Confidence             0   1445666553          235679999886        233322 688998876    2344555554  589


Q ss_pred             EEEeeCCccCC
Q 028010          197 LGTAFHPELTA  207 (215)
Q Consensus       197 ~g~QFHPE~s~  207 (215)
                      +|+|||||++.
T Consensus       236 ~GVQfHPE~~~  246 (315)
T 1l9x_A          236 YGVQWHPEKAP  246 (315)
T ss_dssp             EEESSCTTHHH
T ss_pred             EEEEeCCCCCc
Confidence            99999999854

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.86  E-value=4.6e-23  Score=193.61  Aligned_cols=159  Identities=20%  Similarity=0.270  Sum_probs=104.2

Q ss_pred             EEEEEecCCChHH-HHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+||+|.+.|.. +.++|+++|+.++++....   ++  .++|+||++||+++.++.-.  ..+.   +...+.++|+|
T Consensus        31 ~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~--~~~~---~~i~~~g~PvL  105 (697)
T 2vxo_A           31 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDA--PWFD---PAIFTIGKPVL  105 (697)
T ss_dssp             CEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------C--CCCC---GGGTTSSCCEE
T ss_pred             EEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccc--hhHH---HHHHhCCCCEE
Confidence            6999999998886 5689999999998887532   23  47899999999876543211  1111   23346799999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--  153 (215)
                      |||+|||+|+.++|+              ++.+.             +.++.||+.+...      ..+++|++++..  
T Consensus       106 GIC~G~QlLa~~lGG--------------~v~~~-------------~~~e~G~~~v~~~------~~~~Lf~~l~~~~~  152 (697)
T 2vxo_A          106 GICYGMQMMNKVFGG--------------TVHKK-------------SVREDGVFNISVD------NTCSLFRGLQKEEV  152 (697)
T ss_dssp             EEEHHHHHHHHHTTC--------------CBCC--------------------CEEEEEC------TTSGGGTTCCSEEE
T ss_pred             EECHHHHHHHHHhCC--------------eEeec-------------CCCccceEEEEec------CCChhhhcCCccCc
Confidence            999999999999874              22221             1236677654421      246788888654  


Q ss_pred             eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCC
Q 028010          154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTA  207 (215)
Q Consensus       154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~  207 (215)
                      +++.|++.+...++.. .++|+|+        ..+++++  ++++||+|||||++.
T Consensus       153 v~~~H~~~V~~lp~g~-~vlA~s~--------~~i~ai~~~~~~i~GvQFHPE~~~  199 (697)
T 2vxo_A          153 VLLTHGDSVDKVADGF-KVVARSG--------NIVAGIANESKKLYGAQFHPEVGL  199 (697)
T ss_dssp             ECCCSSCCBSSCCTTC-EEEEEET--------TEEEEEEETTTTEEEESSCTTSSS
T ss_pred             ceeecccceecCCCCe-EEEEEeC--------CceEEEEeCCCCEEEEEecccCCC
Confidence            5556777765555443 6888884        2677776  579999999999985

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.83  E-value=1e-20  Score=162.11  Aligned_cols=168  Identities=10%  Similarity=-0.075  Sum_probs=105.8

Q ss_pred             CEEEEEecCCChHHHHHH----HHHCC--CeEEEECCC--C--------------C-----CCCcCEEEEcCCCcch--H
Q 028010            1 MVVGVLALQGSFNEHIAA----LKRLG--VKGVEIRKP--D--------------Q-----LQNVSSLIIPGGESTT--M   51 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~----l~~~G--~~v~~~~~~--~--------------~-----l~~~d~lil~GG~~~~--~   51 (215)
                      |||+||++.-+.....+.    |....  ++++.++..  +              +     .+++|++||+||+...  .
T Consensus        48 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~  127 (312)
T 2h2w_A           48 LEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPF  127 (312)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCG
T ss_pred             ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCC
Confidence            699999998877655443    33334  444444321  1              1     3679999999997421  2


Q ss_pred             HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCC
Q 028010           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE  131 (215)
Q Consensus        52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~  131 (215)
                      +...+-..+.+.++.+.++++|+||||+|+|+++.++++..            ++..              +..+.||..
T Consensus       128 ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~------------k~~~--------------~~K~~Gv~~  181 (312)
T 2h2w_A          128 EEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIP------------KYEL--------------PQKLSGVYK  181 (312)
T ss_dssp             GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCC------------CEEE--------------EEEEEEEEE
T ss_pred             ccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCc------------cccC--------------CCCEEEEEE
Confidence            22222123456777777789999999999999777765310            0110              011334433


Q ss_pred             CCCcceeeeeeeCceeeecCCCeEEEEEeeC-------CCCccccCCcceeeecccCCCCCceEEEEe-eCCEEEEeeCC
Q 028010          132 GGPETFRGVFIRAPAVLDVGPDVDVLADYPV-------PSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHP  203 (215)
Q Consensus       132 ~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~-------~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~QFHP  203 (215)
                      .+.   .   ..+|++.+++..|.+.||++.       ...+  .+++||+|+.|      ..+++.. .++++++||||
T Consensus       182 ~~~---~---~~~pL~~g~~~~f~vphsr~~e~~~~~v~~~p--ga~vLA~S~~~------~~q~~~~~~~~~~~vQgHP  247 (312)
T 2h2w_A          182 HRV---A---KDSVLFRGHDDFFWAPHSRYTEVKKEDIDKVP--ELEILAESDEA------GVYVVANKSERQIFVTGHP  247 (312)
T ss_dssp             EEE---S---SCCGGGTTCCSEEEEEEEEEEECCHHHHTTCC---CEEEEEETTT------EEEEEECSSSSEEEECSCT
T ss_pred             EEE---c---CCCccccCCCCceEeeEEeccccCHHHccCCC--CCEEEEcCCCC------cceEEEecCCCEEEEECCC
Confidence            221   1   267888888888999998432       2222  34899999987      3444444 45899999999


Q ss_pred             ccCCC
Q 028010          204 ELTAD  208 (215)
Q Consensus       204 E~s~~  208 (215)
                      |.+.+
T Consensus       248 Eyd~~  252 (312)
T 2h2w_A          248 EYDRY  252 (312)
T ss_dssp             TCCTT
T ss_pred             CCCHH
Confidence            99875

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.83  E-value=8.5e-21  Score=162.05  Aligned_cols=169  Identities=14%  Similarity=0.066  Sum_probs=106.1

Q ss_pred             CEEEEEecCCChHHHHHHHHH----CC--CeEEEECCC--C-------------------CCCCcCEEEEcCCCcch--H
Q 028010            1 MVVGVLALQGSFNEHIAALKR----LG--VKGVEIRKP--D-------------------QLQNVSSLIIPGGESTT--M   51 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~----~G--~~v~~~~~~--~-------------------~l~~~d~lil~GG~~~~--~   51 (215)
                      |||+||++.-+.....+.|.+    ..  ++++.++..  +                   +.+++|++||+||+...  .
T Consensus        36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~  115 (301)
T 2vdj_A           36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF  115 (301)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred             ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence            699999998877765544433    23  445444321  1                   13679999999996421  2


Q ss_pred             HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCC
Q 028010           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE  131 (215)
Q Consensus        52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~  131 (215)
                      +...+-..+.+.|+.+.++++|+||||+|+|+++.++++..            ++..              +..+.||..
T Consensus       116 ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~------------k~~~--------------~~K~~Gv~~  169 (301)
T 2vdj_A          116 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQ------------KYPL--------------KEKMFGVFE  169 (301)
T ss_dssp             GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCC------------CEEE--------------EEEEEEEEE
T ss_pred             ccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCc------------cccC--------------CCCEEEEEE
Confidence            22222123466777777789999999999999777765310            0000              011233322


Q ss_pred             CCCcceeeeeeeCceeeecCCCeEEEEEeeC-------CCCccccCCcceeeecccCCCCCceEEEEe-eCCEEEEeeCC
Q 028010          132 GGPETFRGVFIRAPAVLDVGPDVDVLADYPV-------PSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHP  203 (215)
Q Consensus       132 ~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~-------~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~QFHP  203 (215)
                      .+.   ..  ..+|++.+++..|...||++.       ...+  .+++||+|+.|      ..+++.. .++++++||||
T Consensus       170 ~~~---~~--~~~pL~~g~~~~f~~phsr~~~~~~~~v~~~p--ga~vLA~S~~~------~~~~~~~~~~~~~~vQgHp  236 (301)
T 2vdj_A          170 HEV---RE--QHVKLLQGFDELFFAVHSRHTEVRESDIREVK--ELTLLANSEEA------GVHLVIGQEGRQVFALGHS  236 (301)
T ss_dssp             EEE---CC--SSCGGGTTCCSEEEEEEEEEEECCHHHHHTCT--TEEEEEEETTT------EEEEEEEGGGTEEEECSCT
T ss_pred             EEe---cC--CCCccccCCCCceEeeeEeccCcCHHHccCCC--CCEEEEeCCCC------cceEEEecCCCEEEEECCC
Confidence            211   10  267888888888999998541       2222  34899999987      3444444 56999999999


Q ss_pred             ccCCC
Q 028010          204 ELTAD  208 (215)
Q Consensus       204 E~s~~  208 (215)
                      |.+.+
T Consensus       237 Eyd~~  241 (301)
T 2vdj_A          237 EYSCD  241 (301)
T ss_dssp             TCCTT
T ss_pred             CCCHH
Confidence            99875

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.80  E-value=5.8e-21  Score=162.67  Aligned_cols=85  Identities=14%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CEEEEE-ec---CCChHHHHHHHHHCCC----eEEEECC-------------CCC-------CCCcCEEEEcCCCcchHH
Q 028010            1 MVVGVL-AL---QGSFNEHIAALKRLGV----KGVEIRK-------------PDQ-------LQNVSSLIIPGGESTTMA   52 (215)
Q Consensus         1 m~v~il-~~---~G~~~s~~~~l~~~G~----~v~~~~~-------------~~~-------l~~~d~lil~GG~~~~~~   52 (215)
                      |||+|+ ++   +.++.++.++|+++|+    +++++..             +++       +.++|+||||||+++.  
T Consensus        26 ~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~~--  103 (289)
T 2v4u_A           26 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIR--  103 (289)
T ss_dssp             EEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSST--
T ss_pred             eEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCch--
Confidence            489999 66   2338899999998875    3343321             111       5678999999997652  


Q ss_pred             HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (215)
Q Consensus        53 ~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~   90 (215)
                      .+   .++.++|+++++.++|+||||+|+|+|+.++|+
T Consensus       104 ~~---~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg  138 (289)
T 2v4u_A          104 GT---LGKLQAISWARTKKIPFLGVXLGMQLAVIEFAR  138 (289)
T ss_dssp             TH---HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHH
T ss_pred             hH---HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhc
Confidence            22   245788999989999999999999999999975

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.74  E-value=1.7e-19  Score=164.73  Aligned_cols=78  Identities=17%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             cCCChHHHHHHHHH----CCCeEEEEC--CC--------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCc
Q 028010            8 LQGSFNEHIAALKR----LGVKGVEIR--KP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (215)
Q Consensus         8 ~~G~~~s~~~~l~~----~G~~v~~~~--~~--------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~P   73 (215)
                      +..+|.|+.++|++    .|+++.++.  ..        +.+.++|+||+|||+.+..  .   .+..+.++.+.+.++|
T Consensus       312 l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~--~---~g~i~~ir~a~e~~iP  386 (550)
T 1vco_A          312 MPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRG--I---EGKVRAAQYARERKIP  386 (550)
T ss_dssp             --CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTT--H---HHHHHHHHHHHHTTCC
T ss_pred             EEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcc--h---hhhHHHHHHHHHCCCc
Confidence            45678887777665    456776652  21        1256899999999976531  1   1346788888889999


Q ss_pred             EEEEehHHHHHHHhhcc
Q 028010           74 VWGTCAGLIFLANKAVG   90 (215)
Q Consensus        74 ilGIC~G~QlLa~~~~~   90 (215)
                      +||||+|||+|+.++++
T Consensus       387 iLGICLGmQlL~~a~Gg  403 (550)
T 1vco_A          387 YLGICLGLQIAVIEFAR  403 (550)
T ss_dssp             EEEETHHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHhCc
Confidence            99999999999999875

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.65  E-value=7.2e-17  Score=145.73  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             EEEEEe----cCCChHHHHHHHHHCC----CeEEE--ECC----------CCCCCCcCEEEEcCCCcchHHHHHhhCCHH
Q 028010            2 VVGVLA----LQGSFNEHIAALKRLG----VKGVE--IRK----------PDQLQNVSSLIIPGGESTTMARLAEYHNLF   61 (215)
Q Consensus         2 ~v~il~----~~G~~~s~~~~l~~~G----~~v~~--~~~----------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~   61 (215)
                      +|+++-    +..+|.|+.++|+.+|    .++.+  ++.          .+.++++|+||+|||+++.  ..   .++.
T Consensus       295 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~--~~---~g~i  369 (535)
T 3nva_A          295 NIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR--GA---EGKI  369 (535)
T ss_dssp             EEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST--TH---HHHH
T ss_pred             EEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc--cH---HHHH
Confidence            455543    5678999999998765    44444  332          1457889999999997653  11   2457


Q ss_pred             HHHHHHHHcCCcEEEEehHHHHHHHhhccC
Q 028010           62 PALREFVKMGKPVWGTCAGLIFLANKAVGQ   91 (215)
Q Consensus        62 ~~i~~~~~~~~PilGIC~G~QlLa~~~~~~   91 (215)
                      ++|+.+.++++|+||||+|||+|+.++|+.
T Consensus       370 ~~ir~a~~~~~PiLGIClG~Qll~va~Gg~  399 (535)
T 3nva_A          370 KAIKYAREHNIPFLGICFGFQLSIVEFARD  399 (535)
T ss_dssp             HHHHHHHHHTCCEEEETHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCcEEEECcchhHHHHHhhcc
Confidence            889999999999999999999999999863

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.59  E-value=7e-15  Score=145.32  Aligned_cols=86  Identities=27%  Similarity=0.351  Sum_probs=66.7

Q ss_pred             CEEEEEecCCCh--HHHHHHHHHCCCeEEEEC------CCCCCCCcCEEEEcCCCcc--hH--------HHHHhhCCHHH
Q 028010            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGEST--TM--------ARLAEYHNLFP   62 (215)
Q Consensus         1 m~v~il~~~G~~--~s~~~~l~~~G~~v~~~~------~~~~l~~~d~lil~GG~~~--~~--------~~l~~~~~l~~   62 (215)
                      +||+||.++|..  .++.++|+++|++++++.      ..++++++|+||+|||++.  .+        ..+. +..+.+
T Consensus      1048 pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~-~~~l~~ 1126 (1303)
T 3ugj_A         1048 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILF-NHRVRD 1126 (1303)
T ss_dssp             CEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHHHHHT-SHHHHH
T ss_pred             CEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchhhhccchhHHHHHHh-chhHHH
Confidence            489999998854  488999999999987763      4567889999999998642  11        1222 234566


Q ss_pred             HHHHHH-HcCCcEEEEehHHHHHHHh
Q 028010           63 ALREFV-KMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        63 ~i~~~~-~~~~PilGIC~G~QlLa~~   87 (215)
                      .+++++ +.++|+||||.|+|+|++.
T Consensus      1127 ~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A         1127 EFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp             HHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHHHHhCCCcEEEECHHHHHHHHh
Confidence            788765 5799999999999999987

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.58  E-value=3.1e-16  Score=143.15  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=59.0

Q ss_pred             cCCChHHHHHHHHHCCCe----EEEECC---------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            8 LQGSFNEHIAALKRLGVK----GVEIRK---------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         8 ~~G~~~s~~~~l~~~G~~----v~~~~~---------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      +..+|.|+.++|+++|++    +.+...         .+.+.++|+|++|||+.+..  .   .+..+.++.+.+.++|+
T Consensus       301 l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~--~---~g~~~~i~~a~~~~~Pi  375 (545)
T 1s1m_A          301 LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRG--V---EGMITTARFARENNIPY  375 (545)
T ss_dssp             SGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTT--H---HHHHHHHHHHHHTTCCE
T ss_pred             EEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCcc--c---hhhHHHHHHHHHCCCcE
Confidence            445788999999998853    343321         13367899999999976532  1   13467888888889999


Q ss_pred             EEEehHHHHHHHhhcc
Q 028010           75 WGTCAGLIFLANKAVG   90 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~   90 (215)
                      ||||+|||+|+.++|+
T Consensus       376 LGIClG~Qll~va~Gg  391 (545)
T 1s1m_A          376 LGICLGMQVALIDYAR  391 (545)
T ss_dssp             EEETHHHHHHHHHHHH
T ss_pred             EEECChHHHHHHHhCC
Confidence            9999999999999875

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=99.50  E-value=6.5e-15  Score=121.24  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=86.0

Q ss_pred             EEEEEecC-------CChHHHHHHHHHCCCeEEEECCC----CCCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHH
Q 028010            2 VVGVLALQ-------GSFNEHIAALKRLGVKGVEIRKP----DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVK   69 (215)
Q Consensus         2 ~v~il~~~-------G~~~s~~~~l~~~G~~v~~~~~~----~~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~   69 (215)
                      ||+|+.+.       ++..++.++|+++|++++.++..    +.+.++|+|++|||... .+..+.. .++.+.|+++++
T Consensus        33 ~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~-~gl~~~l~~~~~  111 (229)
T 1fy2_A           33 SAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRE-RGLLAPMADRVK  111 (229)
T ss_dssp             EEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECCSCHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECCCcHHHHHHHHHH-CChHHHHHHHHH
Confidence            79999886       45668899999999999888533    45678999999999764 4556654 789999999999


Q ss_pred             cCCcEEEEehHHHHHHHhhccC-C-----CCCccccceeeeEEEec
Q 028010           70 MGKPVWGTCAGLIFLANKAVGQ-K-----LGGQELVGGLDCTVHRN  109 (215)
Q Consensus        70 ~~~PilGIC~G~QlLa~~~~~~-~-----~~~~~~lG~~~~~v~~~  109 (215)
                      +|+|++|+|+|+|+|+..+.+. .     .+..++||++++.+.++
T Consensus       112 ~G~p~~G~sAG~~~l~~~~~~~~d~~~~~~~~~~gLgli~~~v~~H  157 (229)
T 1fy2_A          112 RGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPH  157 (229)
T ss_dssp             TTCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEECS
T ss_pred             cCCEEEEECHHHHhhcccceecCCCCcccCCcCCcCCCCCceecCC
Confidence            9999999999999999987432 0     12467899999888775

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.38  E-value=2.4e-13  Score=110.19  Aligned_cols=107  Identities=17%  Similarity=0.206  Sum_probs=82.5

Q ss_pred             EEEEEecC-C------ChHHHHHHHHHCCCeEEEEC----CC----CCCCCcCEEEEcCCCc-chHHHHHhhCCHHHHHH
Q 028010            2 VVGVLALQ-G------SFNEHIAALKRLGVKGVEIR----KP----DQLQNVSSLIIPGGES-TTMARLAEYHNLFPALR   65 (215)
Q Consensus         2 ~v~il~~~-G------~~~s~~~~l~~~G~~v~~~~----~~----~~l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~   65 (215)
                      ||+++.+. |      +..++.++|+++|++++.++    ++    +.+.++|+|++|||.. ..+..+.. .++.+.|+
T Consensus        29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~-~gl~~~l~  107 (206)
T 3l4e_A           29 TVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKR-TGADKLIL  107 (206)
T ss_dssp             EEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHH-HTHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHH-CChHHHHH
Confidence            78888742 2      34578999999999998884    33    3367899999999865 45666655 78999999


Q ss_pred             HHHHcCCcEEEEehHHHHHHHhhc--cC--------CCCCccccceeeeEEEec
Q 028010           66 EFVKMGKPVWGTCAGLIFLANKAV--GQ--------KLGGQELVGGLDCTVHRN  109 (215)
Q Consensus        66 ~~~~~~~PilGIC~G~QlLa~~~~--~~--------~~~~~~~lG~~~~~v~~~  109 (215)
                      +++++|+|++|||+|+|+|+..+.  +.        .....++||+++..+.+|
T Consensus       108 ~~~~~G~p~~G~sAGa~~l~~~i~~~~~~~~~~~~~~~~~~~GLGlv~~~i~pH  161 (206)
T 3l4e_A          108 EEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPH  161 (206)
T ss_dssp             HHHHTTCEEEEETHHHHTTSSBCGGGTTTSCGGGCSSCCCCBCCCCSSSEEETT
T ss_pred             HHHHcCCeEEEECHHHHHhcccceeccCCCCccccCCCCcCCcccCCCCEeECC
Confidence            999999999999999999998653  11        122457899998887754

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.17  E-value=7.5e-11  Score=94.13  Aligned_cols=85  Identities=26%  Similarity=0.466  Sum_probs=66.7

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCCC----------------------CCCCcCEEEEcCCCcchHHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD----------------------QLQNVSSLIIPGGESTTMARL   54 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~~----------------------~l~~~d~lil~GG~~~~~~~l   54 (215)
                      |||+||.++|.    +....+.|++.|++++++....                      +..++|+||+|||.+.  ..+
T Consensus        24 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~--~~l  101 (193)
T 1oi4_A           24 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSP--DYL  101 (193)
T ss_dssp             CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHH--HHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCH--HHh
Confidence            48999999884    3456889999999988875321                      1246899999999542  334


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+.++|+++.++++|+++||.|.++|+++
T Consensus       102 ~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A          102 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  134 (193)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            333457899999999999999999999999987

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=99.09  E-value=2.7e-10  Score=88.60  Aligned_cols=85  Identities=20%  Similarity=0.284  Sum_probs=66.7

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      |||+||.++|.    +....+.|++.|+++.++...                  +++  .++|.|++|||...  ..+..
T Consensus         3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~   80 (168)
T 3l18_A            3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP--EIVRL   80 (168)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH--HHHTT
T ss_pred             cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH--HHhcc
Confidence            79999999993    335678999999998876531                  122  25999999999642  23434


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.++++|+.+||.|.++|+++
T Consensus        81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           81 NEKAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence            4567899999999999999999999999986

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=98.91  E-value=1.5e-09  Score=85.73  Aligned_cols=84  Identities=18%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             EEEEEecCC----ChHHHHHHHHHCCCeEEEECCC------------------CC--CCCcCEEEEcCCCcchHHHHHhh
Q 028010            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAEY   57 (215)
Q Consensus         2 ~v~il~~~G----~~~s~~~~l~~~G~~v~~~~~~------------------~~--l~~~d~lil~GG~~~~~~~l~~~   57 (215)
                      +|.||..+|    .+....+.|++.|++++++...                  ++  ..+||+|++|||.+.  ..+..+
T Consensus        10 ~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~--~~l~~~   87 (177)
T 4hcj_A           10 ILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGC--ITLWDD   87 (177)
T ss_dssp             EEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGG--GGGTTC
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccH--HHHhhC
Confidence            456666655    2334678999999999886531                  12  247999999999653  234444


Q ss_pred             CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           58 HNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+.++|+++.++++|+.+||.|.++|+++
T Consensus        88 ~~~~~~l~~~~~~~k~iaaIC~g~~~La~a  117 (177)
T 4hcj_A           88 WRTQGLAKLFLDNQKIVAGIGSGVVIMANA  117 (177)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence            567899999999999999999999999986

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=98.89  E-value=3.2e-09  Score=85.36  Aligned_cols=85  Identities=21%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCCC-----------------------CCCCcCEEEEcCCCcchHHHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD-----------------------QLQNVSSLIIPGGESTTMARL   54 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~~-----------------------~l~~~d~lil~GG~~~~~~~l   54 (215)
                      ||+||.++|.    +....+.|++.|++++++....                       +..++|+||+|||.... ..+
T Consensus         4 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~-~~l   82 (205)
T 2ab0_A            4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGA-ECF   82 (205)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHH-HHH
T ss_pred             EEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccH-HHh
Confidence            8999999995    3345788999999988774311                       12468999999996432 234


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehHH-HHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAGL-IFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G~-QlLa~~   87 (215)
                      ..+..+.++|+++.++++++.+||.|. ++|+++
T Consensus        83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence            344567899999999999999999999 999875

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=98.89  E-value=5.2e-09  Score=83.00  Aligned_cols=85  Identities=22%  Similarity=0.275  Sum_probs=65.6

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCCC-------------------CC--CCcCEEEEcCCCcchHHHHHh
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD-------------------QL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~~-------------------~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      ||+||.++|.    +....+.|++.|++++++....                   ++  .++|.|++|||.... ..+..
T Consensus         7 kv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~   85 (190)
T 4e08_A            7 SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGS-NAMGE   85 (190)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHH-HHHHH
T ss_pred             EEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHH-HHhhh
Confidence            8999999884    3346789999999998874311                   11  368999999995322 23434


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.++++++.+||.|.++|+++
T Consensus        86 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           86 SSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            4567899999999999999999999999986

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=98.85  E-value=4e-09  Score=85.16  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=63.2

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCC-------CeEEEECCC------------------CCCCCcCEEEEcCCCcchHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMA   52 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G-------~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~   52 (215)
                      ||+||.++|.    +....+.|+..+       ++++++...                  ++++++|.||+|||......
T Consensus        10 ~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~~~   89 (209)
T 3er6_A           10 RVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPLES   89 (209)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHHHH
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEEEECCCCCchhh
Confidence            8999999983    334566776653       677666421                  13457999999999653322


Q ss_pred             HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        53 ~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus        90 ~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           90 LDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            22233467899999999999999999999999987

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=98.84  E-value=6.3e-09  Score=82.98  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=66.7

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCC-------------------CCC---CCcCEEEEcCCCcchHHHHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL---QNVSSLIIPGGESTTMARLA   55 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~-------------------~~l---~~~d~lil~GG~~~~~~~l~   55 (215)
                      ||+||.++|.    +....+.|++.|++++++...                   +++   .++|.||+|||.... ..+.
T Consensus         5 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~-~~l~   83 (197)
T 2rk3_A            5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA-QNLS   83 (197)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHH-HHHH
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhH-HHhh
Confidence            8999999994    345678999999998877421                   123   578999999996422 2344


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+.++|+++.++++++.+||.|.++|+++
T Consensus        84 ~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           84 ESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            44567899999999999999999999999987

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=98.81  E-value=1.1e-08  Score=80.86  Aligned_cols=86  Identities=22%  Similarity=0.358  Sum_probs=64.7

Q ss_pred             CEEEEEecCCCh----HHHHHHHHHCCCeEEEECCC-----------------------CCC--CCcCEEEEcCCCcchH
Q 028010            1 MVVGVLALQGSF----NEHIAALKRLGVKGVEIRKP-----------------------DQL--QNVSSLIIPGGESTTM   51 (215)
Q Consensus         1 m~v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~-----------------------~~l--~~~d~lil~GG~~~~~   51 (215)
                      |||+||.++|..    ....+.|+..|+++.++...                       +++  .++|.||+|||.... 
T Consensus        10 ~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~-   88 (190)
T 2vrn_A           10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP-   88 (190)
T ss_dssp             CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH-
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH-
Confidence            489999999853    34678899999988765321                       122  368999999996432 


Q ss_pred             HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus        89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence            233333457899999999999999999999999987

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=98.78  E-value=2.8e-08  Score=78.61  Aligned_cols=83  Identities=27%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             EEEEEecCC----ChHHHHHHHHH-CCCeEEEECCC------------------CCCC--CcCEEEEcCCCcchHHHHHh
Q 028010            2 VVGVLALQG----SFNEHIAALKR-LGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         2 ~v~il~~~G----~~~s~~~~l~~-~G~~v~~~~~~------------------~~l~--~~d~lil~GG~~~~~~~l~~   56 (215)
                      ||+||.++|    .+....+.|++ .|+++.++...                  +++.  ++|.||+|||....   +..
T Consensus         3 ~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~---~~~   79 (188)
T 2fex_A            3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE---KGT   79 (188)
T ss_dssp             EEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH---HTC
T ss_pred             EEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc---ccc
Confidence            899999988    45567889998 99998876531                  1222  79999999997422   233


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.++++++.+||.|.++|+++
T Consensus        80 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           80 AADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            4678899999999999999999999999987

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=98.78  E-value=1.3e-08  Score=82.39  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=64.3

Q ss_pred             EEEEEecCC----ChHHHHHHHH--------HCCCeEEEECCC------------------CCCC--CcCEEEEcCCCcc
Q 028010            2 VVGVLALQG----SFNEHIAALK--------RLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGEST   49 (215)
Q Consensus         2 ~v~il~~~G----~~~s~~~~l~--------~~G~~v~~~~~~------------------~~l~--~~d~lil~GG~~~   49 (215)
                      ||+||.++|    ++....+.|+        +.++++.++...                  +++.  ++|.||+|||...
T Consensus         7 ~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~   86 (212)
T 3efe_A            7 KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTW   86 (212)
T ss_dssp             CEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred             EEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence            899999988    3556788898        678888776431                  1233  7999999998643


Q ss_pred             hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        50 ~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..   ..+..+.++|+++.++++++.+||.|..+|+++
T Consensus        87 ~~---~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           87 SE---EIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             TS---GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             cc---ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            21   223457899999999999999999999999987

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=98.74  E-value=2.1e-08  Score=80.92  Aligned_cols=82  Identities=18%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             EEEEEecCC----ChHHHHHHHHHC-CCeEEEECCC-----------------CCCC-CcCEEEEcCCCcchHHHHHhhC
Q 028010            2 VVGVLALQG----SFNEHIAALKRL-GVKGVEIRKP-----------------DQLQ-NVSSLIIPGGESTTMARLAEYH   58 (215)
Q Consensus         2 ~v~il~~~G----~~~s~~~~l~~~-G~~v~~~~~~-----------------~~l~-~~d~lil~GG~~~~~~~l~~~~   58 (215)
                      ||+||.++|    ++....+.|++. |+++.++...                 +++. ++|.|++|||.....    .+.
T Consensus         5 kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~----~~~   80 (206)
T 3f5d_A            5 KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN----DNK   80 (206)
T ss_dssp             EEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC----CCH
T ss_pred             EEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh----cCH
Confidence            899999988    344678889887 8888765421                 2233 799999999864321    224


Q ss_pred             CHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           59 NLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        59 ~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+.++|+++.++++++.+||.|.++|+++
T Consensus        81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           81 KLLHFVKTAFQKNIPIAAICGAVDFLAKN  109 (206)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence            57899999999999999999999999987

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=98.73  E-value=1.4e-08  Score=82.10  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=63.9

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHC--CCeEEEECCC------------------CCCCCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRL--GVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~--G~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~l~~   56 (215)
                      |||+||.++|.    +....+.|+..  +++++++...                  ++.+.+|.||+|||...  ..+..
T Consensus         5 ~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~~~--~~~~~   82 (211)
T 3mgk_A            5 YRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGT--REKVN   82 (211)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCSTHH--HHHTT
T ss_pred             eEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCcch--hhhcC
Confidence            48999999994    33467888877  4777666431                  23345899999999642  23333


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.++++++.+||.|..+|+++
T Consensus        83 ~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           83 DDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             CHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence            3457899999999999999999999999986

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=98.73  E-value=1.8e-08  Score=82.67  Aligned_cols=84  Identities=19%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             EEEEEecCCC----hHHHHHHHHH-CCCeEEEECCC------------------CCCCCcCEEEEcCCCcchHHHHHhhC
Q 028010            2 VVGVLALQGS----FNEHIAALKR-LGVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAEYH   58 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~-~G~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~l~~~~   58 (215)
                      ||+||.++|-    +....+.|++ .|++++++...                  +++.++|.|++|||...  ..+..+.
T Consensus         7 ~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~--~~~~~~~   84 (231)
T 3noq_A            7 QIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV--GALMEDP   84 (231)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH--HHHTTCH
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh--hhhccCH
Confidence            8999999994    3345778887 67887765421                  24467999999999643  2333335


Q ss_pred             CHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           59 NLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        59 ~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+.++|+++.++++++.+||.|..+|+++
T Consensus        85 ~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           85 QALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             HHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            67899999999999999999999999987

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=98.70  E-value=1.7e-08  Score=81.35  Aligned_cols=85  Identities=22%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             EEEEEecCCCh----HHHHHHHHHCCCeEEEECCC-------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010            2 VVGVLALQGSF----NEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         2 ~v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      ||+||.++|..    ....+.|++.|++++++...                   +++  .++|.|++|||.... ..+..
T Consensus        11 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~l~~   89 (208)
T 3ot1_A           11 RILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGA-QAFAD   89 (208)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHH-HHHHT
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHH-HHHhh
Confidence            89999999943    34678999999998876432                   112  368999999996422 23444


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHH-HHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGL-IFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~-QlLa~~   87 (215)
                      +..+.++|+++.++++++.+||.|. .+|+++
T Consensus        90 ~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           90 STALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             CHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            4567899999999999999999999 888875

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.63  E-value=7.1e-08  Score=84.79  Aligned_cols=84  Identities=26%  Similarity=0.413  Sum_probs=66.3

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCCC----------------------------------C--CCCcCEE
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD----------------------------------Q--LQNVSSL   41 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~~----------------------------------~--l~~~d~l   41 (215)
                      ||+||.++|.    +....+.|++.|++++++....                                  +  ..++|.|
T Consensus        14 kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   93 (396)
T 3uk7_A           14 TVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGL   93 (396)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEE
T ss_pred             eEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEE
Confidence            8999999984    3356789999999998875321                                  1  1468999


Q ss_pred             EEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        42 il~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ++|||...  ..+..+..+.++|+++.++++++.+||.|.++|+++
T Consensus        94 ivpGG~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           94 VIPGGRAP--EYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             EECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             EECCCcch--hhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence            99999642  234444567899999999999999999999999987

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=98.62  E-value=4.9e-08  Score=78.35  Aligned_cols=82  Identities=20%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCC------CeEEEECCC-----------------CC--CCCcCEEEEcCCCcchHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLG------VKGVEIRKP-----------------DQ--LQNVSSLIIPGGESTTMA   52 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G------~~v~~~~~~-----------------~~--l~~~d~lil~GG~~~~~~   52 (215)
                      ||+||.++|.    +....+.|+..+      ++++++...                 ++  ..++|.||+|||......
T Consensus         7 ~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~~~   86 (202)
T 3gra_A            7 RVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTPLK   86 (202)
T ss_dssp             EEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCCSC
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchhhc
Confidence            8999999994    234566776654      666665321                 12  357999999998643211


Q ss_pred             HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        53 ~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                         . ..+.++|+++.++++++.+||.|..+|+++
T Consensus        87 ---~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           87 ---Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             ---C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             ---c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence               1 467899999999999999999999999987

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=98.59  E-value=9.8e-08  Score=79.37  Aligned_cols=85  Identities=18%  Similarity=0.262  Sum_probs=63.5

Q ss_pred             CEEEEEecCCC----hHHHHHHH-HHCCCeEEEECCC------------------CCC-CCcCEEEEcCCC-cchHHHHH
Q 028010            1 MVVGVLALQGS----FNEHIAAL-KRLGVKGVEIRKP------------------DQL-QNVSSLIIPGGE-STTMARLA   55 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l-~~~G~~v~~~~~~------------------~~l-~~~d~lil~GG~-~~~~~~l~   55 (215)
                      |||+||.++|.    +....+.| +..|++++++...                  +++ ..||.||+|||. ..  ..+.
T Consensus        24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~--~~l~  101 (253)
T 3ewn_A           24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGT--LAAA  101 (253)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHH--HHHT
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccch--hhhc
Confidence            48999999994    33456778 5668888776421                  122 246999999997 32  2333


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+.++|+++.+++++|.+||.|..+|+++
T Consensus       102 ~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A          102 SDAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             TCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            33567899999999999999999999999987

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=98.57  E-value=8.9e-08  Score=78.33  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=64.7

Q ss_pred             EEEEEec-----CCC----hHHHHHHHHHCCCeEEEECCC------------------------------------CC--
Q 028010            2 VVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP------------------------------------DQ--   34 (215)
Q Consensus         2 ~v~il~~-----~G~----~~s~~~~l~~~G~~v~~~~~~------------------------------------~~--   34 (215)
                      ||+||.+     +|.    +....+.|++.|++++++...                                    ++  
T Consensus         8 kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~   87 (232)
T 1vhq_A            8 KIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQAD   87 (232)
T ss_dssp             EEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCC
T ss_pred             eEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcC
Confidence            8999999     784    234578899999998876421                                    11  


Q ss_pred             CCCcCEEEEcCCCcch--HHHH-------HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           35 LQNVSSLIIPGGESTT--MARL-------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        35 l~~~d~lil~GG~~~~--~~~l-------~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      .+++|+||+|||....  +..+       ..+..+.++|+++.++++++.+||.|.++|++++
T Consensus        88 ~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL  150 (232)
T 1vhq_A           88 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF  150 (232)
T ss_dssp             GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred             cccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence            1358999999996531  1111       1234578999999999999999999999999985

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.57  E-value=8e-08  Score=74.94  Aligned_cols=87  Identities=22%  Similarity=0.327  Sum_probs=60.4

Q ss_pred             CEEEEEecC---CC-hHHHHHHHHHCCCeEEEECCC-------------------CCC----CCcCEEEEcCC--Ccch-
Q 028010            1 MVVGVLALQ---GS-FNEHIAALKRLGVKGVEIRKP-------------------DQL----QNVSSLIIPGG--ESTT-   50 (215)
Q Consensus         1 m~v~il~~~---G~-~~s~~~~l~~~G~~v~~~~~~-------------------~~l----~~~d~lil~GG--~~~~-   50 (215)
                      |||+||.++   |. .-+..+.+.+.|++++++...                   +++    .++|.||+|||  .+.. 
T Consensus         3 ~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~   82 (175)
T 3cne_A            3 KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQ   82 (175)
T ss_dssp             CEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGG
T ss_pred             cEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHH
Confidence            489999998   61 112233333788988876432                   123    46899999999  5222 


Q ss_pred             -HHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           51 -MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        51 -~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                       +.....+..+.++|+++.++++++.+||.|.++|+++
T Consensus        83 ~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           83 QYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             HHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence             1111123457899999999999999999999999987

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.54  E-value=1.6e-07  Score=87.50  Aligned_cols=88  Identities=19%  Similarity=0.192  Sum_probs=68.4

Q ss_pred             CEEEEEecCCC-----hHHHHHHHHHCCCeEEEECCC---------CC--CCCcCEEEEcCCCcch------HHHHHhhC
Q 028010            1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP---------DQ--LQNVSSLIIPGGESTT------MARLAEYH   58 (215)
Q Consensus         1 m~v~il~~~G~-----~~s~~~~l~~~G~~v~~~~~~---------~~--l~~~d~lil~GG~~~~------~~~l~~~~   58 (215)
                      +||+||.-+|+     +..+.++|++.|+++.++...         ++  ...||+||||||....      .+.|..+.
T Consensus       538 rKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~  617 (688)
T 3ej6_A          538 LRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAG  617 (688)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTT
T ss_pred             CEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCH
Confidence            38999999883     345689999999999998542         11  2369999999996431      13454445


Q ss_pred             CHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           59 NLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        59 ~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      ...++++++.+.+|||.+||.|.++|..+-
T Consensus       618 ~a~~fV~e~~~hgKpIAAIchgp~lL~~AG  647 (688)
T 3ej6_A          618 RPSQILTDGYRWGKPVAAVGSAKKALQSIG  647 (688)
T ss_dssp             HHHHHHHHHHHTTCCEEEEGGGHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCEEEEeCccHHHHHHcC
Confidence            578999999999999999999999999873

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.53  E-value=2.2e-07  Score=81.63  Aligned_cols=85  Identities=25%  Similarity=0.355  Sum_probs=66.4

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC----------------------------------CC--CCCcCE
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQ--LQNVSS   40 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~----------------------------------~~--l~~~d~   40 (215)
                      +||+||.++|.    +....+.|++.|++++++...                                  ++  ..++|.
T Consensus       206 ~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  285 (396)
T 3uk7_A          206 KRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDA  285 (396)
T ss_dssp             CEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred             ceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCE
Confidence            38999999984    335678999999998877421                                  01  236899


Q ss_pred             EEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        41 lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ||+|||...  ..+..+..+.++|+++.++++++.+||.|.++|+++
T Consensus       286 livpGg~~~--~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          286 LVIPGGRAP--EYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             EEECCBSHH--HHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             EEECCCcch--hhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence            999999742  234444567899999999999999999999999987

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.53  E-value=2e-07  Score=81.33  Aligned_cols=84  Identities=24%  Similarity=0.336  Sum_probs=65.2

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECCC--------------------CCCC--CcCEEEEcCCCcchHHHHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP--------------------DQLQ--NVSSLIIPGGESTTMARLA   55 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~--------------------~~l~--~~d~lil~GG~~~~~~~l~   55 (215)
                      ||+||.++|.    +....+.|+..|++++++...                    ++++  ++|.||+|||...  ..+.
T Consensus        12 kV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~--~~l~   89 (365)
T 3fse_A           12 KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAP--DKMR   89 (365)
T ss_dssp             EEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHH--HHHT
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcch--hhcc
Confidence            8999999984    335678999999988776421                    1122  5899999999742  2343


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+.++|+++.++++++.+||.|..+|+++
T Consensus        90 ~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           90 RNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence            44567899999999999999999999999987

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=98.52  E-value=1.4e-07  Score=77.86  Aligned_cols=87  Identities=22%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             EEEEEec-----CCC----hHHHHHHHHHCCCeEEEECCC------------------------------------CCC-
Q 028010            2 VVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP------------------------------------DQL-   35 (215)
Q Consensus         2 ~v~il~~-----~G~----~~s~~~~l~~~G~~v~~~~~~------------------------------------~~l-   35 (215)
                      ||+|+..     +|.    +....+.|++.|++++++...                                    +++ 
T Consensus        25 kV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~  104 (242)
T 3l3b_A           25 NSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIR  104 (242)
T ss_dssp             EEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCC
T ss_pred             EEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCC
Confidence            8999987     774    224578999999998876421                                    111 


Q ss_pred             -CCcCEEEEcCCCcch--HHH--------HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           36 -QNVSSLIIPGGESTT--MAR--------LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        36 -~~~d~lil~GG~~~~--~~~--------l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                       +++|+||+|||....  +..        +..+..+.++|+++.++++|+.+||.|.++|+++.
T Consensus       105 ~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             GGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             cccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence             368999999996432  111        12224578899999999999999999999999874

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.50  E-value=9.4e-08  Score=89.56  Aligned_cols=85  Identities=25%  Similarity=0.193  Sum_probs=66.5

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      +||+||..+|.    +..+.++|++.|+++.++...                  ++.  ..||+|||||| ..  ..|..
T Consensus       601 rKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~--~~Lr~  677 (753)
T 3ttv_A          601 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NI--ADIAD  677 (753)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CG--GGTTT
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-Ch--HHhhh
Confidence            48999999983    446789999999998887531                  112  24899999999 32  23444


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      +..+.++|+++.+.+|||.+||.|.++|+++.
T Consensus       678 d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AG  709 (753)
T 3ttv_A          678 NGDANYYLMEAYKHLKPIALAGDARKFKATIK  709 (753)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGT
T ss_pred             CHHHHHHHHHHHhcCCeEEEECchHHHHHHcC
Confidence            45578999999999999999999999999873

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=98.46  E-value=2.7e-07  Score=74.74  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             EEEEEec----------CCC----hHHHHHHHHHCCCeEEEECCC-------------------------------CCC-
Q 028010            2 VVGVLAL----------QGS----FNEHIAALKRLGVKGVEIRKP-------------------------------DQL-   35 (215)
Q Consensus         2 ~v~il~~----------~G~----~~s~~~~l~~~G~~v~~~~~~-------------------------------~~l-   35 (215)
                      ||+|+..          +|.    +....+.|++.|++++++...                               +++ 
T Consensus         7 kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~   86 (224)
T 1u9c_A            7 RVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDD   86 (224)
T ss_dssp             EEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGG
T ss_pred             eEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcC
Confidence            8999998          663    334678899999998876421                               111 


Q ss_pred             -CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           36 -QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        36 -~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                       .++|+||+|||.... ..+..+..+.++|+++.+++++|.+||.|.++|+.+
T Consensus        87 ~~~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A           87 AHGFDAIFLPGGHGTM-FDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             GSSCSEEEECCCTTHH-HHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhhCCEEEECCCcchH-HHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence             368999999997532 223333457899999999999999999999999987

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=98.42  E-value=3.8e-07  Score=72.68  Aligned_cols=85  Identities=21%  Similarity=0.292  Sum_probs=60.1

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECC--C-------------------CCC-------CCcCEEEEcCCCc
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK--P-------------------DQL-------QNVSSLIIPGGES   48 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~--~-------------------~~l-------~~~d~lil~GG~~   48 (215)
                      |||+||.++|-    +....+.|++.|+++.++..  .                   +++       ++||+||+|||..
T Consensus         5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~   84 (194)
T 4gdh_A            5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGL   84 (194)
T ss_dssp             CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHH
T ss_pred             CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCch
Confidence            49999999994    33567889999988765421  0                   011       2379999999954


Q ss_pred             chHHHHHhhCCHHHHHHHHHHc-CCcEEEEehHHHHHHH
Q 028010           49 TTMARLAEYHNLFPALREFVKM-GKPVWGTCAGLIFLAN   86 (215)
Q Consensus        49 ~~~~~l~~~~~l~~~i~~~~~~-~~PilGIC~G~QlLa~   86 (215)
                      .. ..+..+..+.++|+++.++ ++++..||.|..++..
T Consensus        85 ~~-~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~~a  122 (194)
T 4gdh_A           85 GA-KTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAKT  122 (194)
T ss_dssp             HH-HHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHHHH
T ss_pred             hH-hHhhhCHHHHHHHHHhhhcCCceEEeecccccchhh
Confidence            32 3454445678899998764 7999999999855443

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=98.33  E-value=1.2e-06  Score=82.44  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             CEEEEEecCCCh----HHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGSF----NEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~   56 (215)
                      |||+||.++|..    ....+.|+..|++++++...                  +++  ..+|+||+|||... ...+..
T Consensus       535 rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~-~~~l~~  613 (715)
T 1sy7_A          535 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA-AETLSK  613 (715)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHH-HHHHHT
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCccc-Hhhhcc
Confidence            489999999843    34678899999999887531                  112  35899999999532 223433


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      +..+.++|+++.+++++|.+||.|..+|+.++
T Consensus       614 ~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~Al  645 (715)
T 1sy7_A          614 NGRALHWIREAFGHLKAIGATGEAVDLVAKAI  645 (715)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCEEEEECHHHHHHHHcc
Confidence            34578999999999999999999999999983

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=98.29  E-value=1.2e-06  Score=72.32  Aligned_cols=50  Identities=12%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        37 ~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +||+|++|||... +..+..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus        98 ~yD~l~vpGG~~~-~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           98 DYKVFFASAGHGA-LFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hCCEEEEcCCCch-hhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence            5899999999753 2334444567899999999999999999999999876

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=98.27  E-value=1.5e-06  Score=71.94  Aligned_cols=50  Identities=16%  Similarity=0.309  Sum_probs=41.6

Q ss_pred             CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        37 ~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +||+|++|||... +..+..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus       105 ~yD~l~ipGG~g~-~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          105 DYGLMFVCGGHGA-LYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hCCEEEEeCCCch-hhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence            5899999999743 2344444567899999999999999999999999886

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.27  E-value=8.7e-07  Score=82.64  Aligned_cols=87  Identities=20%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CEEEEEec--CCC----hHHHHHHHHHCCCeEEEECCC---------C--CCCCcCEEEEcCCCcc--------------
Q 028010            1 MVVGVLAL--QGS----FNEHIAALKRLGVKGVEIRKP---------D--QLQNVSSLIIPGGEST--------------   49 (215)
Q Consensus         1 m~v~il~~--~G~----~~s~~~~l~~~G~~v~~~~~~---------~--~l~~~d~lil~GG~~~--------------   49 (215)
                      +||+||.-  .|.    ...+.++|++.|++++++...         +  +...||+||||||...              
T Consensus       530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~  609 (688)
T 2iuf_A          530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAG  609 (688)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTT
T ss_pred             CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccc
Confidence            38999988  663    346789999999999988642         1  1236999999999532              


Q ss_pred             -hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        50 -~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                       ..+.|..+....++|+++.+.+|||.+||.|.++|..+
T Consensus       610 ~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          610 SGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             SCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             cchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence             02344444557899999999999999999999999876

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=98.23  E-value=1.6e-06  Score=71.26  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        37 ~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      ++|+||+|||.... ..+..+..+.++|+++.+++++|.+||.|..+|+.+-
T Consensus        98 ~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag  148 (243)
T 1rw7_A           98 DYQIFFASAGHGTL-FDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLT  148 (243)
T ss_dssp             GEEEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred             hCcEEEECCCCCch-hhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcC
Confidence            58999999997532 2333345678999999999999999999999998873

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=98.15  E-value=2.9e-06  Score=71.79  Aligned_cols=53  Identities=21%  Similarity=0.305  Sum_probs=41.3

Q ss_pred             CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        35 l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      .+++|+||+|||.... ..+..+..+.++|+++.+++++|.+||.|..+|+.+.
T Consensus       143 ~~~yD~livPGG~g~~-~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~  195 (291)
T 1n57_A          143 DSEYAAIFVPGGHGAL-IGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  195 (291)
T ss_dssp             TCSEEEEEECCSGGGG-SSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             cccCCEEEecCCcchh-hhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence            3578999999995432 1233334578999999999999999999999888763

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=98.14  E-value=8.4e-07  Score=72.94  Aligned_cols=82  Identities=17%  Similarity=0.222  Sum_probs=56.9

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCC--CeEEEECCC-----------------CCCCCcCEEEEcCC-CcchHHHHHhh
Q 028010            2 VVGVLALQGS----FNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLIIPGG-ESTTMARLAEY   57 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G--~~v~~~~~~-----------------~~l~~~d~lil~GG-~~~~~~~l~~~   57 (215)
                      ||+||.++|.    +....+.|+..+  +++.++...                 ++..++|.||+||| ...  ..+..+
T Consensus        22 kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~--~~l~~~   99 (236)
T 3bhn_A           22 KVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGI--PAALQD   99 (236)
T ss_dssp             EEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEESSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHH--HHHHTC
T ss_pred             EEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEECCCcEEecCCcEEecCcccccccCCCEEEEcCCccCH--hhhccC
Confidence            8999999994    334567787765  677665411                 12346899999999 432  223333


Q ss_pred             CCHHHHHHHHHHcCC-cEEEEehHHHHHHHh
Q 028010           58 HNLFPALREFVKMGK-PVWGTCAGLIFLANK   87 (215)
Q Consensus        58 ~~l~~~i~~~~~~~~-PilGIC~G~QlLa~~   87 (215)
                      ..+.++|  ..++++ ++.+||.|..+|+++
T Consensus       100 ~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A          100 ENFMSAL--KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             HHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred             HHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence            4566777  445566 999999999999987

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=97.77  E-value=1.6e-05  Score=67.27  Aligned_cols=105  Identities=16%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             EEEEEec-CCCh----HHHHHHHHHCCC-eEEEECCC--C---------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010            2 VVGVLAL-QGSF----NEHIAALKRLGV-KGVEIRKP--D---------QLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~~-~G~~----~s~~~~l~~~G~-~v~~~~~~--~---------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i   64 (215)
                      ||+++-. .+..    ..+.++|+++|+ ++..+...  +         .+.++|+|+++||....+-.+-...++.+.|
T Consensus        58 ~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L  137 (291)
T 3en0_A           58 IIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRI  137 (291)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHH
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHH
Confidence            6778754 3332    246678999999 67666431  1         2457999999999765433333347889999


Q ss_pred             HHHHHcC-CcEEEEehHHHHHHHhhc--cC---CCC-----CccccceeeeEE
Q 028010           65 REFVKMG-KPVWGTCAGLIFLANKAV--GQ---KLG-----GQELVGGLDCTV  106 (215)
Q Consensus        65 ~~~~~~~-~PilGIC~G~QlLa~~~~--~~---~~~-----~~~~lG~~~~~v  106 (215)
                      ++++++| .|+.|.|+|+.+++...-  +.   .+.     ..++||+++..+
T Consensus       138 ~~~~~~G~~~~~GtSAGA~i~~~~m~~~g~s~~~p~~~~v~~~~GLGll~~~~  190 (291)
T 3en0_A          138 RQRVHNGEISLAGTSAGAAVMGHHMIAGGSSGEWPNRALVDMAVGLGIVPEIV  190 (291)
T ss_dssp             HHHHHTTSSEEEEETHHHHTTSSEEEEEECCSSCCCGGGEEEEECCCSSTTEE
T ss_pred             HHHHHCCCeEEEEeCHHHHhhhHheEcCCCCccCcccCceeecCcccccCCCc
Confidence            9999999 999999999999987632  11   010     135788888753

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=95.70  E-value=0.026  Score=46.34  Aligned_cols=70  Identities=20%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             cCCChHHHHHHHHHCCCeEEEEC-------CC---CCCCCcCEEEEcCCCcchHH-----HHH--hhCCHHHHHHHHHHc
Q 028010            8 LQGSFNEHIAALKRLGVKGVEIR-------KP---DQLQNVSSLIIPGGESTTMA-----RLA--EYHNLFPALREFVKM   70 (215)
Q Consensus         8 ~~G~~~s~~~~l~~~G~~v~~~~-------~~---~~l~~~d~lil~GG~~~~~~-----~l~--~~~~l~~~i~~~~~~   70 (215)
                      +.+....+.++|+..+++++.+.       .+   +.+.+||.||+.+-......     +..  ......+.|++++++
T Consensus        38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~  117 (256)
T 2gk3_A           38 YEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN  117 (256)
T ss_dssp             EEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh
Confidence            43455668899999999999883       23   24568999999874322111     000  003457899999999


Q ss_pred             CCcEEEE
Q 028010           71 GKPVWGT   77 (215)
Q Consensus        71 ~~PilGI   77 (215)
                      |..+++|
T Consensus       118 GGgll~i  124 (256)
T 2gk3_A          118 GGGLLMI  124 (256)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9999999

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*

Probab=94.13  E-value=0.047  Score=45.59  Aligned_cols=69  Identities=26%  Similarity=0.441  Sum_probs=48.9

Q ss_pred             CEEEEEecCCC-hHHHHHHHHHCCCeEEEECCC-CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         1 m~v~il~~~G~-~~s~~~~l~~~G~~v~~~~~~-~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      |||+|+.-.+. ...+.+.|++.|+++.+.... +.+.++|.+|.-||-++....          .+.+... +|++||=
T Consensus        30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~a----------a~~~~~~-~PilGIN   98 (278)
T 1z0s_A           30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRI----------LQKLKRC-PPIFGIN   98 (278)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHH----------HTTCSSC-CCEEEEE
T ss_pred             eEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHH----------HHHhCCC-CcEEEEC
Confidence            79999876554 556888999999998876542 344678999999996654222          2222224 9999998


Q ss_pred             hH
Q 028010           79 AG   80 (215)
Q Consensus        79 ~G   80 (215)
                      .|
T Consensus        99 ~G  100 (278)
T 1z0s_A           99 TG  100 (278)
T ss_dssp             CS
T ss_pred             CC
Confidence            77

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=92.65  E-value=0.33  Score=40.39  Aligned_cols=61  Identities=13%  Similarity=0.033  Sum_probs=42.2

Q ss_pred             HHHHHHHCC-CeEEEECCC----------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           15 HIAALKRLG-VKGVEIRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        15 ~~~~l~~~G-~~v~~~~~~----------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      +.+.|++.| ++|++..++          +.|.++|.||+--... ...     ....+.|++++++|++++|+..+.
T Consensus        25 l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~-~l~-----~~~~~~l~~yV~~Ggglv~~H~a~   96 (281)
T 4e5v_A           25 LKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGD-SWP-----EETNRRFLEYVQNGGGVVIYHAAD   96 (281)
T ss_dssp             HHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSS-CCC-----HHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred             HHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCC-cCC-----HHHHHHHHHHHHcCCCEEEEeccc
Confidence            456778888 899887653          3578999999733211 111     112467888999999999999754

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*

Probab=90.44  E-value=0.33  Score=40.01  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             CEEEEEecCCC-----hHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHc--CCc
Q 028010            1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM--GKP   73 (215)
Q Consensus         1 m~v~il~~~G~-----~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~--~~P   73 (215)
                      |||+|+..+..     ...+.+.|++.|+++       +..++|.+|.-||-++...          ..+.....  ++|
T Consensus         1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v-------~~~~~D~vv~lGGDGT~l~----------aa~~~~~~~~~~P   63 (272)
T 2i2c_A            1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEY-------DDVEPEIVISIGGDGTFLS----------AFHQYEERLDEIA   63 (272)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTSSCEE-------CSSSCSEEEEEESHHHHHH----------HHHHTGGGTTTCE
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEe-------CCCCCCEEEEEcCcHHHHH----------HHHHHhhcCCCCC
Confidence            89999877432     113556678889887       1356899999999665432          22333333  899


Q ss_pred             EEEEehHH
Q 028010           74 VWGTCAGL   81 (215)
Q Consensus        74 ilGIC~G~   81 (215)
                      ++||=.|.
T Consensus        64 ilGIn~G~   71 (272)
T 2i2c_A           64 FIGIHTGH   71 (272)
T ss_dssp             EEEEESSS
T ss_pred             EEEEeCCC
Confidence            99997663

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=90.04  E-value=0.73  Score=37.88  Aligned_cols=70  Identities=13%  Similarity=0.002  Sum_probs=46.2

Q ss_pred             EEEEEecCC----ChHHHHHHHHHCCCeEEEECCC------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (215)
Q Consensus         2 ~v~il~~~G----~~~s~~~~l~~~G~~v~~~~~~------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~   71 (215)
                      ||.|+. ..    .-..+.++|+..|++|+++...      ++|.+||.||++--...   .+.  ....+.|++++++|
T Consensus         6 ~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~---~l~--~~~~~~L~~yV~~G   79 (259)
T 3rht_A            6 RVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAE---RMT--AQAIDQLVTMVKAG   79 (259)
T ss_dssp             CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGG---GBC--HHHHHHHHHHHHTT
T ss_pred             eEEEEC-CCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccc---cCC--HHHHHHHHHHHHhC
Confidence            677774 22    2234677999999999988753      23568999999742211   111  12357889999988


Q ss_pred             CcEEEE
Q 028010           72 KPVWGT   77 (215)
Q Consensus        72 ~PilGI   77 (215)
                      .-++.+
T Consensus        80 GgLi~~   85 (259)
T 3rht_A           80 CGLVML   85 (259)
T ss_dssp             CEEEEE
T ss_pred             CeEEEe
Confidence            777666

>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*

Probab=87.97  E-value=0.66  Score=43.19  Aligned_cols=63  Identities=16%  Similarity=0.141  Sum_probs=47.2

Q ss_pred             HHHHHHHCCCeEEEECC-----CCCCCCcCEEEEcC-CC---cchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010           15 HIAALKRLGVKGVEIRK-----PDQLQNVSSLIIPG-GE---STTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus        15 ~~~~l~~~G~~v~~~~~-----~~~l~~~d~lil~G-G~---~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      +.++|..++++++.+..     .+.++++|.||.+| ..   +...-+..  ....+.||+++.+|.-++||.-
T Consensus       473 ilEALsg~~~dV~FIsfdDI~e~e~L~d~DVIIn~G~A~TalSgg~~W~~--p~~~~aLR~fV~~GGgLIgVGe  544 (759)
T 2zuv_A          473 ILESLSGMRVNVRFISFDDVLAHGIDSDIDVIINGGPVDTAFTGGDVWTN--PKLVETVRAWVRGGGAFVGVGE  544 (759)
T ss_dssp             HHHHHHTSSSEEEEEEHHHHHHHCCCTTCCEEEEEECTTSTTTCGGGGGC--HHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHhcCCCceEEecHHHhccccccccCCEEEecCcchhcccCccccCC--HHHHHHHHHHHHcCCcEEEeCC
Confidence            78899999999999863     15578999999999 32   22212222  3457899999999999999873

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=86.86  E-value=1.6  Score=31.13  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=41.9

Q ss_pred             EEecCCCh--HHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            5 VLALQGSF--NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         5 il~~~G~~--~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      ++.+..+.  ..+...|...|++++-    +.+..+|.+|+.-|..+ ..++..      ..|+.+.+.|+|++||=
T Consensus         8 FISh~~~d~~~~L~~~l~~~~f~~~~----~~I~~~~~vIvL~G~~t~~s~wv~------~EI~~A~~~gkpIigV~   74 (111)
T 1eiw_A            8 YITEGEVEDYRVFLERLEQSGLEWRP----ATPEDADAVIVLAGLWGTRRDEIL------GAVDLARKSSKPIITVR   74 (111)
T ss_dssp             EECCCCSHHHHHHHHHHHHHCSCEEE----CCSSSCSEEEEEGGGTTTSHHHHH------HHHHHHTTTTCCEEEEC
T ss_pred             EEecccHhHHHHHHHHHhCCCCeeec----CccccCCEEEEEeCCCcCCChHHH------HHHHHHHHcCCCEEEEE
Confidence            34444433  3445555556787775    77889999888776543 334553      45667777899999983

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=86.63  E-value=2.2  Score=39.76  Aligned_cols=58  Identities=17%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010           14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      ...++|.++|+.+.++...+++++|+.||+|.-....       ..+.+.|++++++|.-++..+
T Consensus       429 ~~y~aL~~~gi~vD~v~~~~dL~~Yklvv~P~~~~~~-------~~~~~~L~~yV~~GG~lv~t~  486 (675)
T 3tty_A          429 KYYDALYKQNIQTDMISVEEDLSKYKVVIAPVMYMVK-------PGFAERVERFVAQGGTFVTTF  486 (675)
T ss_dssp             HHHHHHHTTTCCEEEECTTSCCTTCSEEEETTCCBCC-------TTHHHHHHHHHHTTCEEEEET
T ss_pred             HHHHHHHHcCceEEEecCcCCcccCCEEEEeccEecC-------HHHHHHHHHHHhcCCEEEEEc
Confidence            5678999999999999988899999999999854321       234677889999887666554

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=86.42  E-value=0.078  Score=40.26  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus        36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      .+.|.||+.||-...--.... ....++|.+..+.++.+.|||+
T Consensus        83 ~~~D~vVllGGLAMPk~~v~~-e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A           83 GNVDVLVLLGGLSMPGIGSDI-EDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             CCEEEEEEEGGGGSTTTSCCH-HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEeccccCCCCCCCH-HHHHHHHHHhhcCCCCEEEEEh
Confidence            589999999995421101100 1234667776666777999997

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A

Probab=86.22  E-value=1.6  Score=36.41  Aligned_cols=69  Identities=16%  Similarity=0.132  Sum_probs=43.1

Q ss_pred             EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC-C---------------------------CCCCcCEEEEcCCC
Q 028010            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-D---------------------------QLQNVSSLIIPGGE   47 (215)
Q Consensus         2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~-~---------------------------~l~~~d~lil~GG~   47 (215)
                      ||+|+...+.      ...+.+.|++.|+++.+.... +                           ...++|.+|.-||-
T Consensus         6 ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGD   85 (307)
T 1u0t_A            6 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGD   85 (307)
T ss_dssp             EEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCC
Confidence            7898887553      235678899999987654211 0                           11357999999986


Q ss_pred             cchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010           48 STTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus        48 ~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      ++...          .++.+...++|++||=.|
T Consensus        86 GT~l~----------a~~~~~~~~~pvlgi~~G  108 (307)
T 1u0t_A           86 GTFLR----------AAELARNASIPVLGVNLG  108 (307)
T ss_dssp             HHHHH----------HHHHHHHHTCCEEEEECS
T ss_pred             HHHHH----------HHHHhccCCCCEEEEeCC
Confidence            65432          223333457999999765

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=85.65  E-value=1.5  Score=35.79  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             HHHHHHCCCeEEEEC--CC------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010           16 IAALKRLGVKGVEIR--KP------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus        16 ~~~l~~~G~~v~~~~--~~------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      .+.|+..|++|+.+.  +.      +.|+++|.||+-|....  ..+.  ....+.+++++++|+.++|+=.|
T Consensus        38 ~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~--~~l~--~~~~~al~~~V~~GgG~vgiH~a  106 (252)
T 1t0b_A           38 ASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH--DEVK--DEVVERVHRRVLEGMGLIVLHSG  106 (252)
T ss_dssp             HHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG--GGSC--HHHHHHHHHHHHTTCEEEEEGGG
T ss_pred             HHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC--CcCC--HHHHHHHHHHHHcCCCEEEEccc
Confidence            677888999998865  32      13578999998542111  0111  12356788999999999999665

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=81.86  E-value=1.3  Score=34.07  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=32.2

Q ss_pred             CEEEEEecC-----C-----ChHHHHHHHHHCCCeEEE---ECCC-CC--------CCCcCEEEEcCCCc
Q 028010            1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-DQ--------LQNVSSLIIPGGES   48 (215)
Q Consensus         1 m~v~il~~~-----G-----~~~s~~~~l~~~G~~v~~---~~~~-~~--------l~~~d~lil~GG~~   48 (215)
                      |||+||...     |     |-..+.+.|++.|+++..   +.+. +.        ++++|.||.+||.+
T Consensus         4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g   73 (172)
T 3kbq_A            4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLG   73 (172)
T ss_dssp             CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred             CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence            689998853     3     222467889999998754   3332 11        23589999999854

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}

Probab=80.89  E-value=1.3  Score=36.48  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=44.0

Q ss_pred             EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC---------C-----C-CCCcCEEEEcCCCcchHHHHHhhCCH
Q 028010            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP---------D-----Q-LQNVSSLIIPGGESTTMARLAEYHNL   60 (215)
Q Consensus         2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~---------~-----~-l~~~d~lil~GG~~~~~~~l~~~~~l   60 (215)
                      ||+|+...+.      ...+.+.|++.|+++.+....         .     . ..++|.||..||-++..         
T Consensus         7 ki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l---------   77 (292)
T 2an1_A            7 CIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNML---------   77 (292)
T ss_dssp             EEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHH---------
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHH---------
Confidence            7888876442      335678899999998765310         0     0 12479999999966543         


Q ss_pred             HHHHHHHHHcCCcEEEEehH
Q 028010           61 FPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus        61 ~~~i~~~~~~~~PilGIC~G   80 (215)
                       +.++.+...++|++||=.|
T Consensus        78 -~a~~~~~~~~~P~lGI~~G   96 (292)
T 2an1_A           78 -GAARTLARYDINVIGINRG   96 (292)
T ss_dssp             -HHHHHHTTSSCEEEEBCSS
T ss_pred             -HHHHHhhcCCCCEEEEECC
Confidence             2333444467999999655

>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A

Probab=80.68  E-value=7.5  Score=29.33  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             CEEEEEecCCChH-------HHHHHHHHCC-C---eEEEECCCCC------------CCCcCEEEEcC----CCcchHHH
Q 028010            1 MVVGVLALQGSFN-------EHIAALKRLG-V---KGVEIRKPDQ------------LQNVSSLIIPG----GESTTMAR   53 (215)
Q Consensus         1 m~v~il~~~G~~~-------s~~~~l~~~G-~---~v~~~~~~~~------------l~~~d~lil~G----G~~~~~~~   53 (215)
                      +||+|+.-+=|..       ...+.|++.| +   ++.+++.|-.            -.+||++|..|    |....++.
T Consensus        13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~   92 (156)
T 3nq4_A           13 ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEY   92 (156)
T ss_dssp             CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHH
T ss_pred             CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHH
Confidence            4788888655533       3567888999 6   5666654421            14699999888    44444444


Q ss_pred             HHhhCCHHHHHHHHHHcCCcE-EEE
Q 028010           54 LAEYHNLFPALREFVKMGKPV-WGT   77 (215)
Q Consensus        54 l~~~~~l~~~i~~~~~~~~Pi-lGI   77 (215)
                      ...+ -..-+.+-.++.++|+ +||
T Consensus        93 Va~~-v~~Gl~~v~L~~~vPV~~GV  116 (156)
T 3nq4_A           93 VAGG-ASNGLASVAQDSGVPVAFGV  116 (156)
T ss_dssp             HHHH-HHHHHHHHHHHHCCCEEEEE
T ss_pred             HHHH-HHHHHHHHHhccCCCEEEEE
Confidence            4321 1223445556678995 344

>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*

Probab=80.27  E-value=5  Score=30.34  Aligned_cols=86  Identities=12%  Similarity=0.019  Sum_probs=50.5

Q ss_pred             CEEEEEecCCChH-------HHHHHHHHCCCeEEEECCCC------------CC-----CCcCEEEEcC----CCcchHH
Q 028010            1 MVVGVLALQGSFN-------EHIAALKRLGVKGVEIRKPD------------QL-----QNVSSLIIPG----GESTTMA   52 (215)
Q Consensus         1 m~v~il~~~G~~~-------s~~~~l~~~G~~v~~~~~~~------------~l-----~~~d~lil~G----G~~~~~~   52 (215)
                      +||+|+.-+=|..       ...+.|++.|.++.+++.|-            .-     .+||++|..|    |....++
T Consensus        13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd   92 (157)
T 2i0f_A           13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFD   92 (157)
T ss_dssp             CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTH
T ss_pred             cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHH
Confidence            3788888665433       35678889998777776541            11     4699999888    4443344


Q ss_pred             HHHhhCCHHHHHHHHHHcCCcE-EEEe---hHHHHHHHh
Q 028010           53 RLAEYHNLFPALREFVKMGKPV-WGTC---AGLIFLANK   87 (215)
Q Consensus        53 ~l~~~~~l~~~i~~~~~~~~Pi-lGIC---~G~QlLa~~   87 (215)
                      .... .-...+++-.++.++|+ +||-   -=-|.+.++
T Consensus        93 ~Va~-~v~~gl~~vsl~~~vPV~~GVLT~~~~eQA~~Ra  130 (157)
T 2i0f_A           93 IVSN-ESCRALTDLSVEESIAIGNGILTVENEEQAWVHA  130 (157)
T ss_dssp             HHHH-HHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence            3332 11233455566789994 4443   234555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d2nv0a1	195	c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac	4e-35
d2abwa1	218	c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei	8e-35
d1q7ra_	202	c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus	2e-34
d1jvna2	232	c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain	1e-08
d1k9vf_	200	c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i	9e-05
d1ka9h_	195	c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i	0.001

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

 Score =  121 bits (303), Expect = 4e-35
 Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           +       + +G  E F GVFIRAP +L+ G +V+VL+++                    
Sbjct: 119 D------LTIKGLDEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA +QG  LG +FHPELT D R   +F
Sbjct: 153 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLF 183

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  120 bits (302), Expect = 8e-35
 Identities = 76/226 (33%), Positives = 101/226 (44%), Gaps = 31/226 (13%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEI---RKPDQLQNVSSLIIPGGESTTMAR--LA 55
           + +GVL+LQG F  HI    +L +  + I   R    L     L+IPGGESTT+ R    
Sbjct: 3   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 62

Query: 56  EYHNLFPALRE-FVKMGKPVWGTCAGLIFLANKAVGQKLGG----QELVGGLDCTVHRNF 110
           E   L+ AL      + KP+WGTCAG I L+      KL      +   GGLD T+ RNF
Sbjct: 63  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 122

Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP-AVLDVGPDVDVLADYPVPSNKVLY 169
           +GSQ  SF   L++   +      +      IRAP     +  +V VLA +         
Sbjct: 123 YGSQNDSFICSLNII--SDSSAFKKDLTAACIRAPYIREILSDEVKVLATF--------- 171

Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                     +      +I AV Q N LGT FHPEL   T +   F
Sbjct: 172 ---------SHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYF 208

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 33/215 (15%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ A++  G + V ++K +QL+ +  L++PGGESTTM RL + + L
Sbjct: 7   MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGL 66

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 67  MEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 123

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
           E       S +G  + F GVFIRAP +++ G  VDVLA Y                    
Sbjct: 124 E------LSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYNDR----------------- 160

Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
                  IVA RQG  LG +FHPELT D R    F
Sbjct: 161 -------IVAARQGQFLGCSFHPELTDDHRLMQYF 188

>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 19/205 (9%)

Query: 10  GSFNEH--IAALKRLGVKGVEIRKPD--QLQNVSSLIIPG-GESTTMARLAEYHNLFPAL 64
            S N      A++ LG +   ++ P    +   S LI+PG G                 +
Sbjct: 13  ESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPI 72

Query: 65  REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSV 124
           RE+++ GKP+ G C GL  L   +V         +  +D  + R     +        S 
Sbjct: 73  REYIESGKPIMGICVGLQALFAGSVESP--KSTGLNYIDFKLSRFDDSEKPVPEIGWNSC 130

Query: 125 PALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPE 184
               +   G + ++  +           + +   +      K+  +              
Sbjct: 131 IPSENLFFGLDPYKRYYFVHSF--AAILNSEKKKNLENDGWKIAKAK----------YGS 178

Query: 185 KKVIVAVRQGNLLGTAFHPELTADT 209
           ++ I AV + N+  T FHPE +   
Sbjct: 179 EEFIAAVNKNNIFATQFHPEKSGKA 203

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 38/216 (17%)

Query: 1   MVVGVLALQGSFNEH--IAALKRLGVK----GVEIRKPDQLQNVSSLIIPGGES-TTMAR 53
           M +G++++ G  N       +KR         +E+ +  +      L IPG        R
Sbjct: 1   MRIGIISV-GPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMR 59

Query: 54  LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS 113
               ++L   +R+ V+  + V G C G+  L  ++             L           
Sbjct: 60  RLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEE---APGVKGLSLIEGNVVKLRSR 116

Query: 114 QIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSST 173
           ++               +         F+     +     V    +Y             
Sbjct: 117 RLPHMG-----WNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYD------------ 159

Query: 174 VEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT 209
                      +    AVR+G +LG  FHPE ++  
Sbjct: 160 ----------GEIFPSAVRKGRILGFQFHPEKSSKI 185

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 27/193 (13%), Positives = 42/193 (21%), Gaps = 31/193 (16%)

Query: 18  ALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVW 75
           AL+  G      + P   +    L++PG       M    E   +    R   +    + 
Sbjct: 19  ALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLG 78

Query: 76  GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPE 135
                 +          + G  LV G               +                  
Sbjct: 79  ICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNAL---------------- 122

Query: 136 TFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGN 195
            F G F           +       P    K  Y                     + + N
Sbjct: 123 EFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYEG-------------TPFTALLAKEN 169

Query: 196 LLGTAFHPELTAD 208
           LL   FHPE +  
Sbjct: 170 LLAPQFHPEKSGK 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	100.0
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	100.0
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	100.0
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	100.0
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	100.0
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.98
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.96
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.95
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.95
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.92
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.92
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.9
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.86
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.77
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.71
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.66
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.63
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.57
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	99.08
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	98.87
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	98.85
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.82
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	98.81
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	98.81
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	98.65
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	98.57
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	98.27
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	97.72
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	97.5
d1z0sa1	249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	95.39
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.66
d1kwga3	197	A4 beta-galactosidase middle domain {Thermus therm	91.16
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	91.04
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.51
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	87.52
d2gk3a1	246	Putative cytoplasmic protein STM3548 {Salmonella t	84.36
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.83
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	80.97
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	80.86

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.2e-37  Score=249.70  Aligned_cols=180  Identities=38%  Similarity=0.623  Sum_probs=135.8

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G   80 (215)
                      |||+||+++||+.|+.++|+++|+++++++.+++++++|+||||||..+....+.++.++.+.|++++++++|+||||+|
T Consensus         2 ~~igv~~~~G~~~~~~~al~~~G~~~~~i~~~~~l~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G   81 (195)
T d2nv0a1           2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAG   81 (195)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred             cEEEEEecCChHHHHHHHHHHCCCcEEEECCHHHHhhCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeecccc
Confidence            59999999999999999999999999999999999999999999987655444445567889999999999999999999


Q ss_pred             HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEEE
Q 028010           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVLA  158 (215)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~H  158 (215)
                      ||+|++.+++   +...++|++++.+.+...                +| .+..      +..+..++++++  .+++.|
T Consensus        82 ~Qll~~~~~g---~~~~~lg~~~~~~~~~~~----------------~~-~~~~------~~~~~~~~~~~~~~~~~~~h  135 (195)
T d2nv0a1          82 LIILAKEIAG---SDNPHLGLLNVVVERNSF----------------GR-QVDS------FEADLTIKGLDEPFTGVFIR  135 (195)
T ss_dssp             HHHHSBCCC-------CCCCCSCEEEECCCS----------------CT-TTSE------EEEEECCTTCSSCEEEEEES
T ss_pred             HHHHHhhhcc---cccccccccccccccccc----------------cc-ccee------eeeeecccCCCCCceEEEEe
Confidence            9999998865   345778888887765422                11 1110      123344555544  356666


Q ss_pred             EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      +++....++.. .++|+++.        .+++++++|++|+|||||+|++.++++||
T Consensus       136 ~~~~~~~~~~~-~vla~~~~--------~~~a~~~~ni~g~QFHPE~s~~~~~~~~F  183 (195)
T d2nv0a1         136 APHILEAGENV-EVLSEHNG--------RIVAAKQGQFLGCSFHPELTEDHRVTQLF  183 (195)
T ss_dssp             CCEEEEECTTC-EEEEEETT--------EEEEEEETTEEEESSCTTSSSCCHHHHHH
T ss_pred             eeEEEecCCCc-eeeeeECC--------EEEEEEECCEEEEEeCCcccCCcHHHHHH
Confidence            66554444322 46665543        34577899999999999999999999987

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.3e-38  Score=252.19  Aligned_cols=179  Identities=37%  Similarity=0.586  Sum_probs=132.2

Q ss_pred             CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCA   79 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~PilGIC~   79 (215)
                      |||+||+++||+.|+.++|+++|+++++++++++++++|+||||||..+. +..+ +..++.++|++++++++|+||||+
T Consensus         7 mkIgii~~~Gn~~s~~~al~~~G~~~~~v~~~~~l~~~D~lIlPGG~~~~~~~~l-~~~~l~~~I~~~~~~gkPiLGICl   85 (202)
T d1q7ra_           7 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLI-DRYGLMEPLKQFAAAGKPMFGTCA   85 (202)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHH-HHTTCHHHHHHHHHTTCCEEEETT
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCcEEEECCHHHHhcCCEEEECCCCcHHHHHHh-hhhHHHHHHhhhccccceeeeeeh
Confidence            89999999999999999999999999999999999999999999987543 4444 447888999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEE
Q 028010           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL  157 (215)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~  157 (215)
                      |||+|++.+++   ...+++|++++++.....                ++.....       ...+.+.+++.  .+++.
T Consensus        86 G~Qll~~~~~~---~~~~~lg~~~~~v~~~~~----------------~~~~~~~-------~~~~~~~~~~~~~~~~~~  139 (202)
T d1q7ra_          86 GLILLAKRIVG---YDEPHLGLMDITVERNSF----------------GRQRESF-------EAELSIKGVGDGFVGVFI  139 (202)
T ss_dssp             HHHHHEEEEES---SCCCCCCCEEEEEECHHH----------------HCCCCCE-------EEEEEETTTEEEEEEEES
T ss_pred             hhHHhhhhccc---cceeeccccccccccccc----------------ccccccc-------eeccccccccCCcceEEE
Confidence            99999998765   346789999998876432                1111000       12223333322  23334


Q ss_pred             EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      |..++...++. +.++|+++.        .+++++++|+||+|||||+|++.++.+||
T Consensus       140 ~~~~~~~~~~~-~~~~a~~~~--------~~~a~~~gni~G~QFHPEkS~~~~il~~F  188 (202)
T d1q7ra_         140 RAPHIVEAGDG-VDVLATYND--------RIVAARQGQFLGCSFHPELTDDHRLMQYF  188 (202)
T ss_dssp             SCCEEEEECTT-CEEEEEETT--------EEEEEEETTEEEESSCGGGSSCCHHHHHH
T ss_pred             eeccccccccc-eeEEeecCC--------EEEEEEeCCEEEEEeCCccCCChHHHHHH
Confidence            43333322222 145665543        35678899999999999999998888876

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.1e-36  Score=245.13  Aligned_cols=194  Identities=35%  Similarity=0.515  Sum_probs=129.6

Q ss_pred             CEEEEEecCCChHHHHHHHHHCC---CeEEEECCCCCCCCcCEEEEcCCCcc--hHHHHHhhCCHHHHHHHHH-HcCCcE
Q 028010            1 MVVGVLALQGSFNEHIAALKRLG---VKGVEIRKPDQLQNVSSLIIPGGEST--TMARLAEYHNLFPALREFV-KMGKPV   74 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~~l~~~G---~~v~~~~~~~~l~~~d~lil~GG~~~--~~~~l~~~~~l~~~i~~~~-~~~~Pi   74 (215)
                      ||||||+++||+.|+.++|+++|   +++..++++++++++|+||||||.+.  .+..+.....+.+.|.++. +.++|+
T Consensus         3 ikIGvl~l~G~~~~~~~al~~lg~~~~~v~~~~~~~~l~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPi   82 (218)
T d2abwa1           3 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI   82 (218)
T ss_dssp             EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred             CEEEEEeCCCcHHHHHHHHHHcCCCceEEEEeCCHHHHhhCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeE
Confidence            79999999999999999999998   46778888889999999999997543  2222222233445555544 579999


Q ss_pred             EEEehHHHHHHHhhccCCC----CCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010           75 WGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~  150 (215)
                      ||||+|||||++.+++...    ....+++.++.++.++..++.          ++..|..+..   .   .....+...
T Consensus        83 lGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~---~~~~~~~~~  146 (218)
T d2abwa1          83 WGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQ----------NDSFICSLNI---I---SDSSAFKKD  146 (218)
T ss_dssp             EEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC--------------CCEEEEECEE---C---CCCTTCCTT
T ss_pred             EEecHHHHHHHHhccCCccccccccccccccccccceecccCCc----------ccccccceee---c---cCCccccCc
Confidence            9999999999998765321    123456777777776543321          1222221111   0   122223332


Q ss_pred             CC--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010          151 GP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF  215 (215)
Q Consensus       151 ~~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~  215 (215)
                      .+  .+|+.|+|.......   ..++++.++  ..+..++++++++|++|+|||||+|++.|+|+||
T Consensus       147 ~~~~~~y~~h~~~~~~~~~---~~~a~~~~~--~~g~~~i~av~~~ni~G~QFHPE~s~d~r~~~~F  208 (218)
T d2abwa1         147 LTAACIRAPYIREILSDEV---KVLATFSHE--SYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYF  208 (218)
T ss_dssp             CEEEEESCCEEEEECCTTC---EEEEEEEET--TTEEEEEEEEEETTEEEESSCGGGSSCCHHHHHH
T ss_pred             ccceeEEeeEEEEeecCCh---hhheeeccc--cCCCeEEEEEecCCEEEEEcCCeecCCchHHHHH
Confidence            22  457789987654433   345554432  0114678999999999999999999999999997

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-34  Score=231.01  Aligned_cols=178  Identities=20%  Similarity=0.253  Sum_probs=130.5

Q ss_pred             CEEEEEecCC-ChHHHHHHHHHCCCe-----EEEECCCCCCCCcCEEEEcC-CC-cchHHHHHhhCCHHHHHHHHHHcCC
Q 028010            1 MVVGVLALQG-SFNEHIAALKRLGVK-----GVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGK   72 (215)
Q Consensus         1 m~v~il~~~G-~~~s~~~~l~~~G~~-----v~~~~~~~~l~~~d~lil~G-G~-~~~~~~l~~~~~l~~~i~~~~~~~~   72 (215)
                      |||+||++.. |+.|+.++|+++|.+     +.+.+. ++.+.+|+||||| |. ++.+..|.+ .++.+.|++++++++
T Consensus         1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~~-~~~~~~D~lIlPG~G~f~~~~~~l~~-~~~~~~i~~~~~~~~   78 (200)
T d1k9vf_           1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVES-PRNDLYDLLFIPGVGHFGEGMRRLRE-NDLIDFVRKHVEDER   78 (200)
T ss_dssp             CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEESS-SCSCCCSEEEECCCSCHHHHHHHHHH-TTCHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeCC-hHhhccCeEEEcChHHHHHHHHhhhc-ccccccccccccccc
Confidence            9999999854 889999999999853     333333 4557899999999 64 567777865 688999999999999


Q ss_pred             cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-C
Q 028010           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-G  151 (215)
Q Consensus        73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-~  151 (215)
                      |+||||+|||+|++.+++.  +...+++..+.++.+..          ..+.|+++|+...            ..... .
T Consensus        79 PiLGIClG~QlL~~~~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~------------~~~~~~~  134 (200)
T d1k9vf_          79 YVVGVCLGMQLLFEESEEA--PGVKGLSLIEGNVVKLR----------SRRLPHMGWNEVI------------FKDTFPN  134 (200)
T ss_dssp             EEEEETHHHHTTEEEETTS--TTCCCCCCEEEEEEECS----------CSSCSEEEEEEEE------------ESSSSCC
T ss_pred             eEEEEecceeEEeeecccC--ccccccccccccccccc----------ccccccccccccc------------ccccCCc
Confidence            9999999999999887543  34556777777766542          1357888885321            11111 2


Q ss_pred             CCeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010          152 PDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW  211 (215)
Q Consensus       152 ~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~  211 (215)
                      ..+|+.|+|.....+.   .+++++.+.    +..+.++++++|+||+|||||+|++.|+
T Consensus       135 ~~~~~~hs~~~~~~~~---~~~~~~~~~----~~~~~a~v~~~ni~GvQFHPEkS~~~G~  187 (200)
T d1k9vf_         135 GYYYFVHTYRAVCEEE---HVLGTTEYD----GEIFPSAVRKGRILGFQFHPEKSSKIGR  187 (200)
T ss_dssp             EEEEEEESEEEEECGG---GEEEEEEET----TEEEEEEEEETTEEEESSBGGGSHHHHH
T ss_pred             eEEEEeeeeeeccccc---ceEEEEEEC----CeEEEEEEEcCCEEEEeCCCcccchhHH
Confidence            2578999987754443   345555553    2567788999999999999999976554

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=3.3e-33  Score=221.49  Aligned_cols=185  Identities=21%  Similarity=0.262  Sum_probs=134.5

Q ss_pred             CEEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGT   77 (215)
Q Consensus         1 m~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGI   77 (215)
                      |||+||++. ||..++.++|+++|+++++++++++++++|.+|+||+..  +.+..+.. .++...+......++|+|||
T Consensus         1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~~~i~~~d~lIlpG~g~~~~~~~~~~~-~~~~~~~~~~~~~g~pilGi   79 (195)
T d1ka9h_           1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQE-SGFVERVRRHLERGLPFLGI   79 (195)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSS-SCTHHHHHHHHHTTCCEEEC
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCHHHHHHHhhhhcCCCccccchhhhccc-cCCcccccccccccchhhhh
Confidence            999999984 488899999999999999999999999999999999643  34445443 56778888888999999999


Q ss_pred             ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-CCCeEE
Q 028010           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDV  156 (215)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-~~~~~~  156 (215)
                      |+|||+|+....+.  ....++.+...++.+...          ...++.+|+....         ....... ...+++
T Consensus        80 ClG~qll~~~~~e~--~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  138 (195)
T d1ka9h_          80 CVGMQVLYEGSEEA--PGVRGLGLVPGEVRRFRA----------GRVPQMGWNALEF---------GGAFAPLTGRHFYF  138 (195)
T ss_dssp             THHHHTTSSEETTS--TTCCCCCSSSSEEEECCS----------SSSSEEEEEECEE---------CGGGGGGTTCEEEE
T ss_pred             hhhhheeeeccccc--cccCCceeeecccccccc----------ccccccccccccc---------cccccccccccccc
Confidence            99999999876542  234455555555554321          2455666643221         1111122 345788


Q ss_pred             EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc------cccC
Q 028010          157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW------YIIF  215 (215)
Q Consensus       157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~------~~~~  215 (215)
                      .|+|.....+.   ...+++.++     ..++++++++|+||+|||||+|++.|+      .+||
T Consensus       139 ~~~~~~~~~~~---~~~~~~~~~-----~~~~a~v~~~ni~GvQFHPEkS~~~G~~lL~nF~~~~  195 (195)
T d1ka9h_         139 ANSYYGPLTPY---SLGKGEYEG-----TPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRYF  195 (195)
T ss_dssp             EESEECCCCTT---CCEEEEETT-----EEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHHC
T ss_pred             ccceeeecccc---ceeeeecCC-----ceEEEEEEcCCEEEEeCCcccccHhHHHHHHHHHHhC
Confidence            89987766554   344455554     578899999999999999999987654      6666

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.8e-30  Score=212.73  Aligned_cols=164  Identities=15%  Similarity=0.074  Sum_probs=119.1

Q ss_pred             CEEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch-----HHHHHhhCCHHHHHHHH
Q 028010            1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREF   67 (215)
Q Consensus         1 m~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~-----~~~l~~~~~l~~~i~~~   67 (215)
                      |||.||+...  ...++.+.|++.|+++++++.      +++++++|+||++||+.++     .+++.   .+.++|+++
T Consensus         4 mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l~~~d~iii~Ggp~~~~d~~~~~~~~---~~~~~i~~~   80 (230)
T d1o1ya_           4 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK---YEFQLIEEI   80 (230)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH---HHHHHHHHH
T ss_pred             eEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcchhhCCEEEEcCCCcccccchhhhhhH---HHHHHHHHH
Confidence            8999997543  344788999999999998863      2456789999999986443     23443   457889999


Q ss_pred             HHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCcee
Q 028010           68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV  147 (215)
Q Consensus        68 ~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~  147 (215)
                      ++.++|+||||+|||+|+.++|              ++|.+++.            .++.|+....      ...++|+|
T Consensus        81 ~~~~~PilGIC~G~Qlla~alG--------------g~V~~~~~------------~~~~~~~~~~------~~~~~~l~  128 (230)
T d1o1ya_          81 LKKEIPFLGICLGSQMLAKVLG--------------ASVYRGKN------------GEEIGWYFVE------KVSDNKFF  128 (230)
T ss_dssp             HHHTCCEEEETHHHHHHHHHTT--------------CCEEECTT------------CCEEEEEEEE------ECCCCGGG
T ss_pred             HHhcceEEEeecCHHHHHHHhc--------------cccccccc------------cccccccccc------cccchhhh
Confidence            9999999999999999999997              35555432            2344443221      11467899


Q ss_pred             eecCCCeEEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010          148 LDVGPDVDVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD  208 (215)
Q Consensus       148 ~~~~~~~~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~  208 (215)
                      .++++.+.++|+|.+  ..++.  +.++|+|+.|       .+++++.+++||+|||||++.+
T Consensus       129 ~~~~~~~~~~~~H~d~~~lp~~--~~~la~s~~~-------~~qa~~~~~~~g~QfHPE~~~~  182 (230)
T d1o1ya_         129 REFPDRLRVFQWHGDTFDLPRR--ATRVFTSEKY-------ENQGFVYGKAVGLQFHIEVGAR  182 (230)
T ss_dssp             TTSCSEEEEEEEESEEECCCTT--CEEEEECSSC-------SCSEEEETTEEEESSBSSCCHH
T ss_pred             ccCCccceEEEecceeeeeccc--hhhhhhhcCC-------ceEEEEecCEeEEEeCCCCCHH
Confidence            999887666655544  33332  3789999887       3466778899999999998764

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=5.3e-29  Score=199.04  Aligned_cols=163  Identities=16%  Similarity=0.219  Sum_probs=113.1

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEECC---CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~---~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      |||+|+++...+. ++.++|+++|+++++++.   .+++.++|+||++||..+..+...+   +.++++...+.++|+||
T Consensus         2 ~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d~~~~~~~~~dgiIl~Gg~~~~~~~~~~---~~~l~~~~~~~~~PilG   78 (196)
T d2a9va1           2 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDK---LGSVGKYIDDHNYPILG   78 (196)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGG---HHHHHHHHHHCCSCEEE
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCHHHHhcCCcEEEeccccccccccch---hhhHHHHHhhcCceEEE
Confidence            4999999966544 788999999999888753   3567889999999986654433322   23455555568999999


Q ss_pred             EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--e
Q 028010           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V  154 (215)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~  154 (215)
                      ||+|||+|+.++++              ++.+..             .++.+|+.+..      ...+++|++++..  +
T Consensus        79 IC~G~Qll~~~~gg--------------~~~~~~-------------~~~~~~~~~~~------~~~~~l~~~~~~~~~~  125 (196)
T d2a9va1          79 ICVGAQFIALHFGA--------------SVVKAK-------------HPEFGKTKVSV------MHSENIFGGLPSEITV  125 (196)
T ss_dssp             ETHHHHHHHHHTTC--------------EEEEEE-------------EEEEEEEEEEE------SCCCGGGTTCCSEEEE
T ss_pred             eehhhhhhhhcccc--------------cccccc-------------ccccccceEEE------ecCCccccCCCCceEE
Confidence            99999999999863              232221             12334443221      1367888888665  4


Q ss_pred             EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCC
Q 028010          155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTA  207 (215)
Q Consensus       155 ~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~  207 (215)
                      ++.|++.+...++.. .++|+++.|       .+++++  ..|+||+|||||.+.
T Consensus       126 ~~~H~~~v~~~~~~~-~v~a~~~~~-------~v~ai~~~~~~i~gvQfHPE~~~  172 (196)
T d2a9va1         126 WENHNDEIINLPDDF-TLAASSATC-------QVQGFYHKTRPIYATQFHPEVEH  172 (196)
T ss_dssp             EEEEEEEEESCCTTE-EEEEECSSC-------SCSEEEESSSSEEEESSCTTSTT
T ss_pred             EecceeEEEeCCCcc-ceeeccccc-------chheEEECCCCEEEEEeCcccCC
Confidence            667777765555443 788998876       345554  348999999999654

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.7e-26  Score=185.16  Aligned_cols=172  Identities=19%  Similarity=0.198  Sum_probs=100.0

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCCCCC-----CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~~l-----~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ||+||++...+. ++.++|+++|+++++++.....     ..+|+++++||+....+...     ...++..++.++|+|
T Consensus         7 kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d~~~~~~~~~~~~giils~gp~~~~~~~~-----~~~~~~~~~~~~PiL   81 (205)
T d1gpma2           7 RILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENS-----PRAPQYVFEAGVPVF   81 (205)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTC-----CCCCGGGGTSSSCEE
T ss_pred             eEEEEECCchHHHHHHHHHHHCCCEEEEECCCCCHHHHhhcCCCeEEecCCCCccchhhh-----hhHHHHHHhCCCCEE
Confidence            899999965554 5679999999999888654322     26799999998754322111     123344566899999


Q ss_pred             EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeee--eeCceeeecCCC
Q 028010           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVF--IRAPAVLDVGPD  153 (215)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~--~~~pl~~~~~~~  153 (215)
                      |||+|||+|+.++|+              ++.+.             +.+++||+.+....-...+  .......+....
T Consensus        82 GIClG~Qlla~~~Gg--------------~v~~~-------------~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (205)
T d1gpma2          82 GVCYGMQTMAMQLGG--------------HVEAS-------------NEREFGYAQVEVVNDSALVRGIEDALTADGKPL  134 (205)
T ss_dssp             EETHHHHHHHHHHTC--------------EEECC-------------SSCEEEEEEEEECSCCTTTTTCCSEECTTSCEE
T ss_pred             EeccchhhhhhhcCC--------------ccccc-------------cccccCcceeccccccccccccccccccCCccc
Confidence            999999999999974              22221             1223333221110000000  011111111222


Q ss_pred             --eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCC-CCcc
Q 028010          154 --VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTA-DTRW  211 (215)
Q Consensus       154 --~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~-~~~~  211 (215)
                        ++..|++.....+... .++++++++     ...+.+.++.|+||+|||||++. +.|.
T Consensus       135 ~~~~~~h~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~ni~gvQFHPE~s~s~~G~  189 (205)
T d1gpma2         135 LDVWMSHGDKVTAIPSDF-ITVASTESC-----PFAIMANEEKRFYGVQFHPEVTHTRQGM  189 (205)
T ss_dssp             EEEEEEECSEEEECCTTC-EEEEECSSC-----SCSEEEETTTTEEEESBCTTSTTSTTHH
T ss_pred             eeeecccccccccccccc-eeeeccCCC-----ceEEEEeCCCCEEEEEeecccCCCccHH
Confidence              3444554444334332 455665554     33344556779999999999986 5554

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.92  E-value=1.7e-24  Score=172.23  Aligned_cols=169  Identities=15%  Similarity=0.194  Sum_probs=104.0

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCCC-C---CC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-Q---LQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-~---l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi   74 (215)
                      .|.|++..++|. .++++|+++|+++++++..+ +   ++  ++|+|+++||+.+..+...  ......+.++++.++|+
T Consensus         3 ~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~--~~~~~~i~~~~~~~~Pi   80 (195)
T d1qdlb_           3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED--IGVSLDVIKYLGKRTPI   80 (195)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHH--HTTHHHHHHHHTTTSCE
T ss_pred             EEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccc--cccchhhhhhhcCCCCE
Confidence            688999888865 46889999999998886432 2   22  5799999998765432211  12245667778889999


Q ss_pred             EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe
Q 028010           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV  154 (215)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~  154 (215)
                      ||||+|||+|+.++|+              ++.+...+.    .   -..+.+.|...         ...++|.++++.+
T Consensus        81 LGIClG~Qll~~~~G~--------------~v~~~~~~~----~---~~~~~~~~~~~---------~~~~lf~~~~~~~  130 (195)
T d1qdlb_          81 LGVCLGHQAIGYAFGA--------------KIRRARKVF----H---GKISNIILVNN---------SPLSLYYGIAKEF  130 (195)
T ss_dssp             EEETHHHHHHHHHTTC--------------EEEEEEEEE----E---EEEEEEEECCS---------SCCSTTTTCCSEE
T ss_pred             EEeehhhhhhhhccCC--------------EEEeecccc----c---ccccccccccc---------cccccccCCCccc
Confidence            9999999999999973              333321000    0   00111122110         1345677776654


Q ss_pred             --EEEEEeeCCCCccccCCcc-eeeecccCCCCCceEEEEe--eCCEEEEeeCCccCC-CCc
Q 028010          155 --DVLADYPVPSNKVLYSSST-VEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTA-DTR  210 (215)
Q Consensus       155 --~~~Hs~~~~~~~~~~~~~l-a~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~-~~~  210 (215)
                        +.+|++.....+... ... +++++       ..+++++  +.|+||+|||||++. +.|
T Consensus       131 ~~~~~h~~~~~~~~~~~-~~~~~~~~~-------~~i~ai~~~~~~i~GvQFHPE~~~s~~G  184 (195)
T d1qdlb_         131 KATRYHSLVVDEVHRPL-IVDAISAED-------NEIMAIHHEEYPIYGVQFHPESVGTSLG  184 (195)
T ss_dssp             EEEEEEEEEEECCCTTE-EEEEEESSS-------CCEEEEEESSSSEEEESSBTTSTTCTTH
T ss_pred             eeeecceeeeeccccCc-ccceeccCC-------CcEEEEEECCCCEEEEEcCCCCCCCcch
Confidence              556666553333211 233 33333       2566665  458999999999877 444

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.90  E-value=5.9e-24  Score=169.07  Aligned_cols=158  Identities=18%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             EEEEEecCCChH-HHHHHHHHCCCeEEEECCCC-------CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (215)
Q Consensus         2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-------~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~   71 (215)
                      .|.|++..++|. .+++.|+++|+++++++...       .+  .+.|+|+++||++.....     .....+++.++.+
T Consensus         2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~-----~~~~~i~~~l~~~   76 (192)
T d1i7qb_           2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEA-----GCMPELLQRLRGQ   76 (192)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGS-----TTHHHHHHHHBTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCcccccccc-----ccchhhHHhhhcC
Confidence            478899877775 46889999999999886432       12  257899998887654221     1134567778889


Q ss_pred             CcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC
Q 028010           72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG  151 (215)
Q Consensus        72 ~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~  151 (215)
                      +|+||||+|||+|+.++|              +++.+.             +.++.||+....      ....++|.+.+
T Consensus        77 iPiLGIClG~Q~la~~~G--------------g~v~~~-------------~~~~~g~~~~~~------~~~~~l~~~~~  123 (192)
T d1i7qb_          77 LPIIGICLGHQAIVEAYG--------------GQVGQA-------------GEILHGKASAIA------HDGEGMFAGMA  123 (192)
T ss_dssp             BCEEEETHHHHHHHHHTT--------------CEEEEE-------------EEEEEEEEEEEE------ECCCGGGTTCC
T ss_pred             ccEEeeeHHHHHHHHHCC--------------CeEEEC-------------CcccccceEEEe------ecCCCceeecc
Confidence            999999999999999997              344442             123456543221      13556777775


Q ss_pred             CC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccC
Q 028010          152 PD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELT  206 (215)
Q Consensus       152 ~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s  206 (215)
                      ..  +++.|++.+...+... .++|+++.        .+++++  +.|+||+|||||..
T Consensus       124 ~~~~~~~~h~~~~~~~~~~~-~~~a~~~~--------~i~ai~~~~~~i~GvQFHPEs~  173 (192)
T d1i7qb_         124 NPLPVARYHSLVGSNIPADL-TVNARFGE--------MVMAVRDDRRRVCGFQFHPESI  173 (192)
T ss_dssp             SSEEEEEEEEEEEESCCTTS-EEEEEETT--------EEEEEEETTTTEEEESSCTTST
T ss_pred             ccceEEeeccccccccccee-eeecCCCC--------eeEEEEECCCCEEEEEeCCCcC
Confidence            54  5777888776555532 45666543        456665  45899999999954

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.1e-22  Score=164.08  Aligned_cols=84  Identities=18%  Similarity=0.281  Sum_probs=65.7

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCCCC---C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~---l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG   76 (215)
                      ||+||+| |.-.++.+.|+++|+.++++.....   +  .++|+|||+||+++..+.-    ...+.++++++.++||||
T Consensus        41 ~i~~~D~-G~k~~ilr~l~~~~~~~~v~p~~~~~~~i~~~~pdgivlS~GPg~P~~~~----~~~~~~~~~~~~~iPILG  115 (228)
T d1a9xb2          41 HVVAYDF-GAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCD----YAITAIQKFLETDIPVFG  115 (228)
T ss_dssp             EEEEEES-SCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTCH----HHHHHHHHHTTSCCCEEE
T ss_pred             eEEEEeC-CCcHHhHhHHHhcCceEEEcCCCCCHHHHHhcCCCEEEEeCCCCccccch----hHHHHHHHHHhCCCCEEE
Confidence            7999999 5445578999999999998876432   2  3689999999986542211    124677788888999999


Q ss_pred             EehHHHHHHHhhcc
Q 028010           77 TCAGLIFLANKAVG   90 (215)
Q Consensus        77 IC~G~QlLa~~~~~   90 (215)
                      ||+|||+|+.++|+
T Consensus       116 IClG~Qlia~~~Gg  129 (228)
T d1a9xb2         116 ICLGHQLLALASGA  129 (228)
T ss_dssp             ETHHHHHHHHHTTC
T ss_pred             EEcChHHHHHHcCC
Confidence            99999999999983

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.4e-19  Score=146.74  Aligned_cols=167  Identities=16%  Similarity=0.202  Sum_probs=91.7

Q ss_pred             HHHHHHHHCCCeEEEECCCCC-------CCCcCEEEEcCCCcc--hHHHHHhhCCHHHHH--HHHHHcCCcEEEEehHHH
Q 028010           14 EHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGEST--TMARLAEYHNLFPAL--REFVKMGKPVWGTCAGLI   82 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~~-------l~~~d~lil~GG~~~--~~~~l~~~~~l~~~i--~~~~~~~~PilGIC~G~Q   82 (215)
                      +++++++.+|+.++.+....+       ++..|+||+|||..+  ........+.+.+..  +.....++|+||||+|||
T Consensus        29 sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Q  108 (288)
T d1l9xa_          29 SYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFE  108 (288)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHH
T ss_pred             HHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHH
Confidence            788999999999988875422       346899999998532  111111111222322  222334689999999999


Q ss_pred             HHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec--CCCeEEEEEe
Q 028010           83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV--GPDVDVLADY  160 (215)
Q Consensus        83 lLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~--~~~~~~~Hs~  160 (215)
                      +|+.++|+....  ...+.. +...             +.............   ..  ....++..+  ...++..|++
T Consensus       109 ll~~~~gG~~~~--~~~~~~-~~~~-------------~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~~~H~~  167 (288)
T d1l9xa_         109 ELSLLISGECLL--TATDTV-DVAM-------------PLNFTGGQLHSRMF---QN--FPTELLLSLAVEPLTANFHKW  167 (288)
T ss_dssp             HHHHHHHSSCCC--EEEEEE-EEEE-------------CCEECSTTTTCSTT---TT--SCHHHHHHHHHSCCEEEEEEE
T ss_pred             HHHHHhCCEeec--cccCcC-Ccce-------------eEEecCCCccceeE---ee--cccchhhhccCCceEEEeccc
Confidence            999998752110  000000 0000             00011111111000   00  122234444  3457888999


Q ss_pred             eCCC--------CccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010          161 PVPS--------NKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT  206 (215)
Q Consensus       161 ~~~~--------~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s  206 (215)
                      .+..        .+... .++|++.++    ...++++++..  +++|+|||||++
T Consensus       168 ~v~~~~~~~~~~l~~~~-~v~a~s~d~----~~e~I~~ie~~~~pi~GvQfHPEk~  218 (288)
T d1l9xa_         168 SLSVKNFTMNEKLKKFF-NVLTTNTDG----KIEFISTMEGYKYPVYGVQWHPEKA  218 (288)
T ss_dssp             ECBHHHHHTCHHHHHHE-EEEEEEESS----SCEEEEEEEESSSCEEEESSCTTHH
T ss_pred             EEEecccchhhhcCCce-EEEEEECCC----CeEEEEEEEcCCCcEEEEEcCCCCC
Confidence            8742        12222 577888765    23466666643  799999999974

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.71  E-value=7e-18  Score=140.78  Aligned_cols=167  Identities=14%  Similarity=0.110  Sum_probs=102.6

Q ss_pred             CEEEEEecCCChHHHHH-HHHHCC---C--eEEEECCC----------------C---C--CCCcCEEEEcCCCcch--H
Q 028010            1 MVVGVLALQGSFNEHIA-ALKRLG---V--KGVEIRKP----------------D---Q--LQNVSSLIIPGGESTT--M   51 (215)
Q Consensus         1 m~v~il~~~G~~~s~~~-~l~~~G---~--~v~~~~~~----------------~---~--l~~~d~lil~GG~~~~--~   51 (215)
                      |||+||++.-+...... .++.+|   .  ++..+...                .   +  -.++||+||+|++.+.  +
T Consensus        20 L~I~iLNlMP~k~~TE~qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~~~f   99 (281)
T d2ghra1          20 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF   99 (281)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTTSCG
T ss_pred             eEEEEEecCCcchhhHHHHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCcccc
Confidence            69999999777665443 344444   3  33333211                0   1  1468999999997543  3


Q ss_pred             HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCC--ccccceeeeEEEeccCCCcceeeeeecccCcccC
Q 028010           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG--QELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS  129 (215)
Q Consensus        52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~--~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw  129 (215)
                      +...+-..+.+.++.+.+.++|+||||+|+|+++.++++.....  .+..|+.+..+                       
T Consensus       100 edv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~~~~-----------------------  156 (281)
T d2ghra1         100 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEV-----------------------  156 (281)
T ss_dssp             GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEE-----------------------
T ss_pred             cccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEEEee-----------------------
Confidence            34333345667777777789999999999999999997421000  00111111000                       


Q ss_pred             CCCCCcceeeeeeeCceeeecCCCeEEEEEeeCC-------CCccccCCcceeeecccCCCCCceEEEE-eeCCEEEEee
Q 028010          130 QEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVP-------SNKVLYSSSTVEIQEENAMPEKKVIVAV-RQGNLLGTAF  201 (215)
Q Consensus       130 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~-------~~~~~~~~~la~s~~~~~~~~~~~~~~~-~~~~v~g~QF  201 (215)
                                ....+|++.+++..|...||....       ..+. . .++|.|+.+      ...++. ..++++++|+
T Consensus       157 ----------~~~~~pL~~g~~d~f~~p~Sr~~~~~~d~v~~~p~-l-~vLa~S~~~------g~~~~~~~~~~~~~iQg  218 (281)
T d2ghra1         157 ----------REQHVKLLQGFDELFFAPHSRHTEVRESDIREVKE-L-TLLANSEEA------GVHLVIGQEGRQVFALG  218 (281)
T ss_dssp             ----------CCSSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTT-E-EEEEEETTT------EEEEEEEGGGTEEEECS
T ss_pred             ----------ccCCChhccCCcchhheeeeecccCCHHHHhhCCC-c-eEEeecCCc------ccEEEEECCCCEEEEeC
Confidence                      002578999998889988886421       2222 2 466666653      233443 4568999999


Q ss_pred             CCccCCC
Q 028010          202 HPELTAD  208 (215)
Q Consensus       202 HPE~s~~  208 (215)
                      |||.+.+
T Consensus       219 HPEYd~~  225 (281)
T d2ghra1         219 HSEYSCD  225 (281)
T ss_dssp             CTTCCTT
T ss_pred             CCCcchh
Confidence            9999764

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1e-16  Score=130.96  Aligned_cols=96  Identities=18%  Similarity=0.316  Sum_probs=68.8

Q ss_pred             EEEEE----ecCCChHHHHHHHHHCCC----eE--EEECC-------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010            2 VVGVL----ALQGSFNEHIAALKRLGV----KG--VEIRK-------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il----~~~G~~~s~~~~l~~~G~----~v--~~~~~-------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i   64 (215)
                      +|+++    .+.++|.|+.++|+.+|+    ++  ..++.       .+.+.++|+|++|||++..  ..   .+....+
T Consensus         5 ~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~R--G~---eGki~ai   79 (258)
T d1s1ma1           5 TIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYR--GV---EGMITTA   79 (258)
T ss_dssp             EEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSST--TH---HHHHHHH
T ss_pred             EEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcC--CH---HHHHHHH
Confidence            56765    477899999999998763    33  33432       3567899999999998742  11   2346778


Q ss_pred             HHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010           65 REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (215)
Q Consensus        65 ~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~  108 (215)
                      +.+.++++|+||||+|||++.-.+.      ...+|+-+...++
T Consensus        80 ~yARen~iPfLGIClGmQ~avIE~A------Rnvlg~~~A~S~E  117 (258)
T d1s1ma1          80 RFARENNIPYLGICLGMQVALIDYA------RHVANMENANSTE  117 (258)
T ss_dssp             HHHHHTTCCEEEETHHHHHHHHHHH------HHHHCCTTCEETT
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHH------HHhCCCCCCcCCC
Confidence            8888899999999999999988764      2345555555444

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=2.4e-15  Score=123.97  Aligned_cols=86  Identities=26%  Similarity=0.331  Sum_probs=64.3

Q ss_pred             EEEEEecCCC--hHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch------HH---HHHhhCCHHHHH
Q 028010            2 VVGVLALQGS--FNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT------MA---RLAEYHNLFPAL   64 (215)
Q Consensus         2 ~v~il~~~G~--~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~------~~---~l~~~~~l~~~i   64 (215)
                      ||+||.++|.  -.+...||+..|+++..+..      ..+|+++|+|++|||++..      ..   .+..+..+.+.+
T Consensus         8 kvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~   87 (262)
T d1t3ta2           8 KVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEF   87 (262)
T ss_dssp             EEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHH
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccccccceEEEeccccccccccchhHHHhhhhhhhHHHHHH
Confidence            8999999995  44688999999999888753      4578899999999997531      00   111112334555


Q ss_pred             HHHHH-cCCcEEEEehHHHHHHHh
Q 028010           65 REFVK-MGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        65 ~~~~~-~~~PilGIC~G~QlLa~~   87 (215)
                      .+++. .++++||||-|+|+|.+.
T Consensus        88 ~~f~~~~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          88 ETFFHRPQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             HHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHhhcCCceEEeechHHHHHHHh
Confidence            56665 589999999999999986

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=1e-15  Score=124.53  Aligned_cols=96  Identities=16%  Similarity=0.294  Sum_probs=65.8

Q ss_pred             EEEEE----ecCCChHHHHHHHHHCC----CeE--EEECCC--------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010            2 VVGVL----ALQGSFNEHIAALKRLG----VKG--VEIRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (215)
Q Consensus         2 ~v~il----~~~G~~~s~~~~l~~~G----~~v--~~~~~~--------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~   63 (215)
                      +|+|+    .+.++|.|+.++|+.+|    +++  ..++..        +.+.++|+|++|||++..  ..   .+....
T Consensus         5 ~IaiVGKY~~l~DaY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dGIlvPGGFG~r--G~---eGki~a   79 (250)
T d1vcoa1           5 KIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVR--GI---EGKVRA   79 (250)
T ss_dssp             EEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSST--TH---HHHHHH
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHHhcCCeEEecCCCCcc--ch---HHHHHH
Confidence            56664    37889999999999875    333  334321        236789999999998742  11   233567


Q ss_pred             HHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010           64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (215)
Q Consensus        64 i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~  108 (215)
                      ++.+.++++|+||||+|||++.-.+.      +..+|+-+...++
T Consensus        80 i~yARen~iPfLGIClGmQ~avIEfA------Rnvlgl~~A~s~E  118 (250)
T d1vcoa1          80 AQYARERKIPYLGICLGLQIAVIEFA------RNVAGLKGANSTE  118 (250)
T ss_dssp             HHHHHHTTCCEEEETHHHHHHHHHHH------HHTSCCTTCEETT
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHHH------HHHHHhhcccccc
Confidence            88888899999999999999988774      3445555555444

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.2e-10  Score=88.85  Aligned_cols=85  Identities=24%  Similarity=0.297  Sum_probs=66.3

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CC--CCCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~--l~~~d~lil~GG~~~~~~~l~~   56 (215)
                      |||+||.++|-    +....+.|++.|+++.++...                  ++  ..++|+|++|||....  .+..
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~--~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPE--RVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHH--HHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchh--hhcc
Confidence            99999999983    334578999999998876531                  12  2478999999996432  2323


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ++.+.++|+++.++++|+.+||.|..+|+++
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            3457899999999999999999999999986

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.5e-10  Score=85.26  Aligned_cols=86  Identities=20%  Similarity=0.236  Sum_probs=67.1

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC--C-----------------C---CCCcCEEEEcCCCcchHHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP--D-----------------Q---LQNVSSLIIPGGESTTMARL   54 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~--~-----------------~---l~~~d~lil~GG~~~~~~~l   54 (215)
                      +||+||.++|.    +....+.|++.|++++++...  +                 +   ..+||+|++|||.... ..+
T Consensus         2 Kkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~-~~l   80 (186)
T d1p5fa_           2 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA-QNL   80 (186)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHH-HHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCcccc-ccc
Confidence            58999999994    335678999999999887421  0                 1   1368999999996432 334


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+.++|+++.++++++.+||.|..+|+++
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence            444567899999999999999999999999986

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.6e-09  Score=80.89  Aligned_cols=85  Identities=27%  Similarity=0.493  Sum_probs=65.8

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC--------------------CC--CCCcCEEEEcCCCcchHHHH
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP--------------------DQ--LQNVSSLIIPGGESTTMARL   54 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~--------------------~~--l~~~d~lil~GG~~~~~~~l   54 (215)
                      +||+||.++|.    +....+.|++.|++++++...                    ++  .++||+||+|||...  ..+
T Consensus         2 KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~--~~l   79 (170)
T d1oi4a1           2 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSP--DYL   79 (170)
T ss_dssp             CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHH--HHH
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhh--hhh
Confidence            48999999984    334678999999998776421                    11  246899999999642  234


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+.++|+++.++++|+.+||.|..+|+++
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            344567899999999999999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.85  E-value=5.4e-09  Score=81.28  Aligned_cols=84  Identities=25%  Similarity=0.287  Sum_probs=65.0

Q ss_pred             CEEEEEecCC----ChHHHHHHHHH-CCCeEEEECCC------------------C--CCCCcCEEEEcCCCcchHHHHH
Q 028010            1 MVVGVLALQG----SFNEHIAALKR-LGVKGVEIRKP------------------D--QLQNVSSLIIPGGESTTMARLA   55 (215)
Q Consensus         1 m~v~il~~~G----~~~s~~~~l~~-~G~~v~~~~~~------------------~--~l~~~d~lil~GG~~~~~~~l~   55 (215)
                      .||+|+.++|    .+..+...|++ .|++++++...                  +  +..++|.||+|||.....   .
T Consensus         2 ~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~---~   78 (188)
T d2fexa1           2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK---G   78 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH---T
T ss_pred             CEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccc---c
Confidence            1999999988    35566778875 79998886531                  1  234799999999975321   1


Q ss_pred             hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      .+..+.++||++.++++++.+||.|..+|+++
T Consensus        79 ~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          79 TAADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence            23567899999999999999999999999986

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.82  E-value=2.3e-09  Score=80.86  Aligned_cols=84  Identities=24%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CC--CCCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~--l~~~d~lil~GG~~~~~~~l~~   56 (215)
                      .||+||.++|-    +....++|++.|+++.++...                  .+  ...||+||+|||...   .+..
T Consensus         4 rkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~---~l~~   80 (156)
T d1p80a1           4 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIA---DIAD   80 (156)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTH---HHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchH---HHhc
Confidence            38999999993    446789999999998776431                  11  136899999998543   2334


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.+++|||.+||.|.++|+.+
T Consensus        81 ~~~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          81 NGDANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             chHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            4456789999999999999999999999877

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=98.81  E-value=6.2e-09  Score=80.05  Aligned_cols=86  Identities=19%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CC--CCCcCEEEEcCCCcchHHHHHh
Q 028010            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAE   56 (215)
Q Consensus         1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~--l~~~d~lil~GG~~~~~~~l~~   56 (215)
                      .||+||.++|-    +....+.|++.|++++++...                  .+  ..++|++++|||.... ..+..
T Consensus         4 rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~-~~~~~   82 (184)
T d1sy7a1           4 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAA-ETLSK   82 (184)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHH-HHHHT
T ss_pred             cEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccc-ccccc
Confidence            38999999994    335678999999999887531                  11  1368999999985432 23333


Q ss_pred             hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +..+.++|+++.++++|+.+||.|.++|+++
T Consensus        83 ~~~~~~~l~~~~~~~k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          83 NGRALHWIREAFGHLKAIGATGEAVDLVAKA  113 (184)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             ccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence            3457889999999999999999999999997

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=2.7e-09  Score=84.98  Aligned_cols=89  Identities=21%  Similarity=0.287  Sum_probs=63.7

Q ss_pred             CEEEEEe-----cCCCh----HHHHHHHHHCCCeEEEECCC------------------------------------C--
Q 028010            1 MVVGVLA-----LQGSF----NEHIAALKRLGVKGVEIRKP------------------------------------D--   33 (215)
Q Consensus         1 m~v~il~-----~~G~~----~s~~~~l~~~G~~v~~~~~~------------------------------------~--   33 (215)
                      .||+|+-     ++|..    ......|++.|++++++.+.                                    +  
T Consensus         2 kKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v   81 (217)
T d1vhqa_           2 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   81 (217)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHC
Confidence            1898874     35532    24578999999999886421                                    0  


Q ss_pred             CCCCcCEEEEcCCCcchH---------HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhc
Q 028010           34 QLQNVSSLIIPGGESTTM---------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (215)
Q Consensus        34 ~l~~~d~lil~GG~~~~~---------~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~   89 (215)
                      +.++||+|++|||.+...         +.++.+..+.++++++.++|||+.+||.|.++|+...+
T Consensus        82 ~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~  146 (217)
T d1vhqa_          82 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD  146 (217)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred             CHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence            124699999999975321         11111234678999999999999999999999999864

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=2.7e-08  Score=77.66  Aligned_cols=85  Identities=22%  Similarity=0.275  Sum_probs=63.6

Q ss_pred             EEEEEecCCC----hHHHHHHHHHCCCeEEEECC---C--------------C------CCCCcCEEEEcCCCcchHHHH
Q 028010            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRK---P--------------D------QLQNVSSLIIPGGESTTMARL   54 (215)
Q Consensus         2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~---~--------------~------~l~~~d~lil~GG~~~~~~~l   54 (215)
                      |..|+.++|.    .....+.|++.|++++++..   .              +      +..++|+|++|||.... ..+
T Consensus         3 ~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~-~~l   81 (195)
T d2ab0a1           3 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGA-ECF   81 (195)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHH-HHH
T ss_pred             eEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcc-ccc
Confidence            6788888884    23467889999999877641   1              0      23579999999996432 234


Q ss_pred             HhhCCHHHHHHHHHHcCCcEEEEehH-HHHHHHh
Q 028010           55 AEYHNLFPALREFVKMGKPVWGTCAG-LIFLANK   87 (215)
Q Consensus        55 ~~~~~l~~~i~~~~~~~~PilGIC~G-~QlLa~~   87 (215)
                      ..+..+.++||++.++++++.+||.| ..+|+++
T Consensus        82 ~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          82 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             cccHHHHHHHHHHhhccceeeeeeccchhhhhhc
Confidence            44456789999999999999999999 5777765

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.57  E-value=3.4e-08  Score=78.54  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             HHHHHHHHHCCCeEEEECCC-------------------------------C--CCCCcCEEEEcCCCcchHHHHHhhCC
Q 028010           13 NEHIAALKRLGVKGVEIRKP-------------------------------D--QLQNVSSLIIPGGESTTMARLAEYHN   59 (215)
Q Consensus        13 ~s~~~~l~~~G~~v~~~~~~-------------------------------~--~l~~~d~lil~GG~~~~~~~l~~~~~   59 (215)
                      ....+.|++.|++|+++...                               .  +.++||+|++|||.+.. ..+..+..
T Consensus        29 ~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~-~~l~~~~~  107 (221)
T d1u9ca_          29 AVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTM-FDFPDNET  107 (221)
T ss_dssp             HHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHH-HHSTTCHH
T ss_pred             HHHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchh-hcchhhHH
Confidence            45678999999999987531                               0  13579999999997643 34545456


Q ss_pred             HHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           60 LFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        60 l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      +.++++++.+++||+.+||.|.++|+.+
T Consensus       108 l~~li~~~~~~~k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_         108 LQYVLQQFAEDGRIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHHHHhccCcceeecccceeeecc
Confidence            7889999999999999999999999875

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=7.1e-07  Score=71.44  Aligned_cols=73  Identities=12%  Similarity=0.201  Sum_probs=57.8

Q ss_pred             HHHHHHHHCCCeEEEECCC----------------------------------------C--CCCCcCEEEEcCCCcchH
Q 028010           14 EHIAALKRLGVKGVEIRKP----------------------------------------D--QLQNVSSLIIPGGESTTM   51 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~----------------------------------------~--~l~~~d~lil~GG~~~~~   51 (215)
                      .....|++.|++|++..+.                                        +  +.++||+|++|||... +
T Consensus        32 ~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ydav~ipGG~g~-~  110 (236)
T d1qvwa_          32 HPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGT-L  110 (236)
T ss_dssp             HHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGCSEEEECCSTTH-H
T ss_pred             HHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHHHHHhcccChhhCCHhHCCEEEEeCCccc-h
Confidence            3567899999999987521                                        0  1247999999999764 3


Q ss_pred             HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (215)
Q Consensus        52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~   87 (215)
                      ..+..+..+.++|+.+.++|+||.+||.|.++|+.+
T Consensus       111 ~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~  146 (236)
T d1qvwa_         111 FDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence            456555667889999999999999999999988765

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1.2e-05  Score=65.63  Aligned_cols=52  Identities=21%  Similarity=0.362  Sum_probs=42.6

Q ss_pred             CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (215)
Q Consensus        36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~   88 (215)
                      .+||+|++|||... +..+..+..+.++|+.+.++|+||..||.|...|..+.
T Consensus       140 ~dYdav~iPGGhG~-~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~  191 (279)
T d1n57a_         140 SEYAAIFVPGGHGA-LIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  191 (279)
T ss_dssp             CSEEEEEECCSGGG-GSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             ccccEEEecCCccc-hhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcc
Confidence            37999999999763 33455556678899999999999999999999987653

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.50  E-value=5.2e-05  Score=59.92  Aligned_cols=107  Identities=16%  Similarity=0.246  Sum_probs=76.0

Q ss_pred             EEEEEec---CCChHH----HHHHHHHCCCeEEEECCCCC----CCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHH
Q 028010            2 VVGVLAL---QGSFNE----HIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVK   69 (215)
Q Consensus         2 ~v~il~~---~G~~~s----~~~~l~~~G~~v~~~~~~~~----l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~   69 (215)
                      ||+++-.   +.++..    ..+.+..+|++++.++..++    +.++|+|++.||.... ...+. ..++.+.|+++++
T Consensus        33 ~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~~~~~l~~ad~I~v~GGn~~~l~~~l~-~t~l~~~l~~~~~  111 (229)
T d1fyea_          33 SAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESR-ERGLLAPMADRVK  111 (229)
T ss_dssp             EEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSCHHHHHHHCSEEEECCSCHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             eEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEecccccHHHHHhhCCEEEEcCCCHHHHHHHHH-hCCHHHHHHHHHH
Confidence            6777743   234332    34567788999988765443    4679999999997643 33444 3688999999999


Q ss_pred             cCCcEEEEehHHHHHHHhhccC------CCCCccccceeeeEEEec
Q 028010           70 MGKPVWGTCAGLIFLANKAVGQ------KLGGQELVGGLDCTVHRN  109 (215)
Q Consensus        70 ~~~PilGIC~G~QlLa~~~~~~------~~~~~~~lG~~~~~v~~~  109 (215)
                      +|+++.|.-+|+.+++..+...      .....++||+++..+.++
T Consensus       112 ~G~vi~G~SAGA~v~~~~~~~~~~~~~~~~~~~~glgl~~~~~~pH  157 (229)
T d1fyea_         112 RGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPH  157 (229)
T ss_dssp             TTCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEECS
T ss_pred             cCCeEEEeChhHhhcCccccccCCCCccCCcccccccccccccccc
Confidence            9999999999999988765321      122356788888776654

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.39  E-value=0.009  Score=47.21  Aligned_cols=70  Identities=29%  Similarity=0.454  Sum_probs=52.0

Q ss_pred             CEEEEEec-CCChHHHHHHHHHCCCeEEEECCC-CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus         1 m~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~-~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      ||++|+-- ++....+.+.|++.+.++..++.+ ++++++|.+|.-||-++.+..          ++.+ +..+|++||=
T Consensus         1 mr~~iv~k~d~~~k~i~e~l~~~~~~~~~~~~~~~~~~~~D~vi~iGGDGT~L~a----------~~~~-~~~~PilGIn   69 (249)
T d1z0sa1           1 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRI----------LQKL-KRCPPIFGIN   69 (249)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHH----------HTTC-SSCCCEEEEE
T ss_pred             CeEEEEECCchhHHHHHHHHHhcCCeEEEecCccccccCCCEEEEECCcHHHHHH----------HHHh-cCCCcEEEEC
Confidence            89998765 445667889999999999988754 456789999999996654322          2222 3468999998


Q ss_pred             hHH
Q 028010           79 AGL   81 (215)
Q Consensus        79 ~G~   81 (215)
                      .|.
T Consensus        70 ~G~   72 (249)
T d1z0sa1          70 TGR   72 (249)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.016  Score=38.29  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=46.2

Q ss_pred             EEEEEecCCChHHHHHHHHHCCCeEEEECCCC----------------------CCCCcCEEEEcCCCcchHHHHHhhCC
Q 028010            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD----------------------QLQNVSSLIIPGGESTTMARLAEYHN   59 (215)
Q Consensus         2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~----------------------~l~~~d~lil~GG~~~~~~~l~~~~~   59 (215)
                      ||+|+-+..+=.++++.|.+.|+++.+++...                      .++++|.+|++-|.+..         
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~~---------   77 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALA---------   77 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCTT---------
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCCCC---------
Confidence            68888887676789999999999998876421                      01357888886664422         


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 028010           60 LFPALREFVKMGKPVWG   76 (215)
Q Consensus        60 l~~~i~~~~~~~~PilG   76 (215)
                       ...++.+.++|+||.|
T Consensus        78 -~~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          78 -HPSLSAAADAGIEIVG   93 (93)
T ss_dssp             -SHHHHHHHHTTCEEEC
T ss_pred             -CHHHHHHHHcCCCeEC
Confidence             1355666678999986

>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: A4 beta-galactosidase middle domain
domain: A4 beta-galactosidase middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.16  E-value=0.37  Score=36.03  Aligned_cols=55  Identities=22%  Similarity=0.196  Sum_probs=40.7

Q ss_pred             HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010           14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (215)
Q Consensus        14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC   78 (215)
                      ...++|+++|+.+.++...+++++|+.||+|.=.-..          .+++++++++|..++.-+
T Consensus        36 ~~Y~al~~~gv~vDiv~~~~dls~Yklvv~P~l~~~~----------~~~l~~~v~~GG~lv~g~   90 (197)
T d1kwga3          36 LFYSALRRLGLDVDVVPPGASLRGYAFAVVPSLPIVR----------EEALEAFREAEGPVLFGP   90 (197)
T ss_dssp             HHHHHHHTTTCCEEEECTTSCCTTCSEEEESCCSSCC----------HHHHHHHHTCSSCEEECT
T ss_pred             HHHHHHHHcCCceeecCCCCCcccCCEEEEcchHhCC----------HHHHHHHHHCCCEEEEec
Confidence            3567999999999999988899999999999743221          134566777776655444

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.04  E-value=0.21  Score=40.07  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             CEEEEEecCCCh------HHHHHHHHHCCCeEEEECCC----------------------------CCCCCcCEEEEcCC
Q 028010            1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP----------------------------DQLQNVSSLIIPGG   46 (215)
Q Consensus         1 m~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~----------------------------~~l~~~d~lil~GG   46 (215)
                      .||+|+...+.-      ..+.+.|++.|+++.+....                            +..+++|.+|.-||
T Consensus         1 r~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGG   80 (302)
T d1u0ta_           1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG   80 (302)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcC
Confidence            378888876642      25678899999998764321                            11245799999999


Q ss_pred             CcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           47 ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        47 ~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      -++.+          ..++.+...++|+|||=.|.
T Consensus        81 DGT~L----------~a~~~~~~~~~PilGin~G~  105 (302)
T d1u0ta_          81 DGTFL----------RAAELARNASIPVLGVNLGR  105 (302)
T ss_dssp             HHHHH----------HHHHHHHHHTCCEEEEECSS
T ss_pred             ChHHH----------HHHHHhhccCCeEEEeCCCc
Confidence            66543          23344555689999998874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.51  E-value=0.45  Score=30.90  Aligned_cols=65  Identities=11%  Similarity=-0.020  Sum_probs=39.5

Q ss_pred             CEEEEEecCCChHH-HHHHHHHCCCeEEEEC---------------------CCCCCCCcCEEEEcCCCcchHHHHHhhC
Q 028010            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR---------------------KPDQLQNVSSLIIPGGESTTMARLAEYH   58 (215)
Q Consensus         1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~---------------------~~~~l~~~d~lil~GG~~~~~~~l~~~~   58 (215)
                      |||=++-..|.-.+ +++.|.+.|+.|.-.+                     +++.+.+.|.||.+.+.+...       
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~n-------   74 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDN-------   74 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTC-------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCCC-------
Confidence            66666666665443 4455666666554332                     334567889999887754322       


Q ss_pred             CHHHHHHHHHHcCCcEE
Q 028010           59 NLFPALREFVKMGKPVW   75 (215)
Q Consensus        59 ~l~~~i~~~~~~~~Pil   75 (215)
                         ..++++.+.|+|++
T Consensus        75 ---pel~~A~~~gIpv~   88 (89)
T d1j6ua1          75 ---PEIVRARMERVPIE   88 (89)
T ss_dssp             ---HHHHHHHHTTCCEE
T ss_pred             ---HHHHHHHHcCCCcc
Confidence               22455666899986

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.52  E-value=0.59  Score=35.76  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             HHHHHHHCCCeEEEEC--C-C-----CCCCCcCEEEEcCCCc-chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010           15 HIAALKRLGVKGVEIR--K-P-----DQLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (215)
Q Consensus        15 ~~~~l~~~G~~v~~~~--~-~-----~~l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~   81 (215)
                      +.+.|++.|+++.+..  . .     +.|+++|.||+-+-.. ...+.     ...+.|.+++++|++++|+=.++
T Consensus        32 ia~~l~~~g~~v~tat~~e~~~~~~~~~L~~~Dvli~~~~~~~~~l~~-----~q~~al~~~v~~G~G~VglH~a~  102 (240)
T d1t0ba_          32 IASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKD-----EVVERVHRRVLEGMGLIVLHSGH  102 (240)
T ss_dssp             HHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCH-----HHHHHHHHHHHTTCEEEEEGGGG
T ss_pred             HHHHhhcCCceEEEEEecCccccCCHHHHhcCCEEEEeCCCCCCcCCH-----HHHHHHHHHHHcCCCEEEEecCc
Confidence            4467888999987642  2 1     2357899999865321 11111     12467788899999999986553

>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: STM3548-like
domain: Putative cytoplasmic protein STM3548
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.36  E-value=0.51  Score=36.28  Aligned_cols=66  Identities=21%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCCeEEEECC-------C---CCCCCcCEEEEcCCCcchH----H-HH--HhhCCHHHHHHHHHHcCCcEE
Q 028010           13 NEHIAALKRLGVKGVEIRK-------P---DQLQNVSSLIIPGGESTTM----A-RL--AEYHNLFPALREFVKMGKPVW   75 (215)
Q Consensus        13 ~s~~~~l~~~G~~v~~~~~-------~---~~l~~~d~lil~GG~~~~~----~-~l--~~~~~l~~~i~~~~~~~~Pil   75 (215)
                      ..+.++|+..|+++..+..       |   +++.+||.||+.......+    + +.  .......++|++++++|.-++
T Consensus        33 ~~l~~aL~~~~~~v~~~~~~~~~~~fP~~~~~l~~yDvvIl~D~~a~~~~~~~~~~~~~~~~p~ql~~L~~fV~~GGGLi  112 (246)
T d2gk3a1          33 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLL  112 (246)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHhCCceEEEecchhhhhhCccCHHHHhcCCEEEEecCchhhcccCcchhhcccCCHHHHHHHHHHHHhCCCEE
Confidence            4578999999999998642       2   3456899999977432111    0 00  011345789999999998777


Q ss_pred             EEe
Q 028010           76 GTC   78 (215)
Q Consensus        76 GIC   78 (215)
                      .++
T Consensus       113 ~ig  115 (246)
T d2gk3a1         113 MIG  115 (246)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.83  E-value=1.2  Score=28.94  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             EEEEEecCCChHH-HHHHHHHCCCeEEEEC---------------------CCCCCCCcCEEEEcCCCcchHHHHHhhCC
Q 028010            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIR---------------------KPDQLQNVSSLIIPGGESTTMARLAEYHN   59 (215)
Q Consensus         2 ~v~il~~~G~~~s-~~~~l~~~G~~v~~~~---------------------~~~~l~~~d~lil~GG~~~~~~~l~~~~~   59 (215)
                      ||=++-..|.-.+ ++..|.+.|++|.-.+                     .++.+.+.|.+|++.+.+...        
T Consensus        10 ~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~n--------   81 (96)
T d1p3da1          10 QIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDN--------   81 (96)
T ss_dssp             EEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTC--------
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCCC--------
Confidence            5555656665543 3556666666554433                     233456789888877654321        


Q ss_pred             HHHHHHHHHHcCCcEE
Q 028010           60 LFPALREFVKMGKPVW   75 (215)
Q Consensus        60 l~~~i~~~~~~~~Pil   75 (215)
                        ..++++.+.|+|++
T Consensus        82 --pel~~A~~~gipii   95 (96)
T d1p3da1          82 --PELVTSKQKRIPVI   95 (96)
T ss_dssp             --HHHHHHHHTTCCEE
T ss_pred             --HHHHHHHHcCCCEE
Confidence              12445667899986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=80.97  E-value=1.3  Score=31.14  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=24.1

Q ss_pred             CEEEEEecCCChH-HHHHHHHHCCCeEEEEC
Q 028010            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR   30 (215)
Q Consensus         1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~   30 (215)
                      |||+|+-+ |+.. ++.+.|.+.|.++..++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d   30 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVS   30 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEEEEE
Confidence            99999987 6665 57789999999988765

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.86  E-value=0.79  Score=33.71  Aligned_cols=31  Identities=13%  Similarity=0.118  Sum_probs=23.0

Q ss_pred             CEEEEEec--CCChH----HHHHHHHHCCCeEEEECC
Q 028010            1 MVVGVLAL--QGSFN----EHIAALKRLGVKGVEIRK   31 (215)
Q Consensus         1 m~v~il~~--~G~~~----s~~~~l~~~G~~v~~~~~   31 (215)
                      |||+|+.+  .||-.    .+.+.+++.|+++++++.
T Consensus         3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~   39 (201)
T d1ydga_           3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKV   39 (201)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEc
Confidence            89999987  45433    356677899999988753