Citrus Sinensis ID: 028069

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSRITRAPFRTLHVVSAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD
Secondary Structure (PSIPRED)
ccEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHEHHcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSLTIantagsgsgsrilytnpttdpqhrrhgitfptstcssritrapfrTLHVVSAAKKLssrtgrfdsknrrgntgaittteedkKDQQQRTAEIgqdstninnnkfenagvivgvdgspmpelpglepdfwegpqwgaFGFFLQYLWAFGIVFALVACGIAVATynegatdfketpaykesvqsrdllegpdasnsdvfesnptevapsld
Flexible Loop (DISEMBL)
msltiantagsgsgsrilytnpttdpqhrrhgitfptstcssritrapfrtLHVVsaakklssrtgrfdsknrrgntgaittteedkkdqqQRTAeigqdstninnnkFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEgatdfketpaYKESVQSRDLlegpdasnsdvfesnptevapsld
Low Complexity Region (SEG)
MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSRITRAPFRTLHVVSAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD
Disordered region (IsUnstruct)
**********************************F***TCSSRITRAPFRTLHVV******************************************************ENAGVIVGVDG*****LPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATD****************************************
Disordered Region (DISOPRED)
**LT***TAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSS***RAPFRTLHVVS*********************************************TNINNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKE****************************PT*******
Disordered Region (DISEMBL)
***********GSGSRILYTNPTTDPQHRRHGITFPTSTCSSRITRAPFRTLHVVSAAKKLSSRTGRFDSKNRRGNTGAIT***************IGQDSTNINNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKETPAYKESVQSRDLLEGPDASNSDV*************
Disordered Region (DISPRO)
MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSRITRAPFRTLHVVSAAKK*****************************************TNINNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKETPAYKESVQSRDLLE**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSRITRAPFRTLHVVSAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
224130118	206	predicted protein [Populus trichocarpa]	0.929	0.966	0.597	3e-60
224113385	206	predicted protein [Populus trichocarpa]	0.929	0.966	0.592	1e-59
255583792	198	conserved hypothetical protein [Ricinus	0.892	0.964	0.552	5e-54
297734196	248	unnamed protein product [Vitis vinifera]	0.939	0.810	0.589	8e-54
449440937	199	PREDICTED: uncharacterized protein LOC10	0.906	0.974	0.566	9e-54
225455912	206	PREDICTED: uncharacterized protein LOC10	0.939	0.975	0.589	2e-53
22655144	212	unknown protein [Arabidopsis thaliana] g	0.906	0.915	0.487	2e-41
297839265	212	hypothetical protein ARALYDRAFT_339588 [	0.906	0.915	0.482	3e-41
115454897	199	Os03g0710600 [Oryza sativa Japonica Grou	0.719	0.773	0.511	4e-36
226495819	186	uncharacterized protein LOC100273166 [Ze	0.696	0.801	0.505	3e-32

>gi|224130118|ref|XP_002328658.1| predicted protein [Populus trichocarpa] gi|222838834|gb|EEE77185.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 156/221 (70%), Gaps = 22/221 (9%)

Query: 1   MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSR----ITRAPFRTLHVVS 56
           MSL IAN  G+G G RILYTNPT     R H  T   +TC  +    + R+P   LH+VS
Sbjct: 1   MSLFIAN--GNGGGGRILYTNPT-----RHHPYTH--TTCRPQFLFPLRRSPQDHLHIVS 51

Query: 57  AA-KKLSS--RTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAG 113
           A+ KKLSS  R G+FDSKNRR +T +    EE+K+D       +  +  N++ +  EN  
Sbjct: 52  ASNKKLSSVSRIGKFDSKNRRSSTTSTKDQEENKRDGSGGDENVNGEVKNVSTSVGEN-- 109

Query: 114 VIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGAT 173
                DG  +PELPG EPDFWEGPQW  FGFF+QY+WAFGIVFALVACGIAVATYN GA 
Sbjct: 110 ----YDGYFLPELPGDEPDFWEGPQWDGFGFFVQYMWAFGIVFALVACGIAVATYNGGAA 165

Query: 174 DFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           DFKETPAYKES+QSRDLLE P+ASNSDVF+SNPTEVAPSL+
Sbjct: 166 DFKETPAYKESIQSRDLLEEPEASNSDVFDSNPTEVAPSLE 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113385|ref|XP_002332599.1| predicted protein [Populus trichocarpa] gi|222834250|gb|EEE72727.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 155/221 (70%), Gaps = 22/221 (9%)

Query: 1   MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTSTCSSR----ITRAPFRTLHVVS 56
           MSL IAN  G+G G RILYTNPT     R H  T   + C  +    + R+P   LH+VS
Sbjct: 1   MSLFIAN--GNGGGGRILYTNPT-----RHHPYTH--TPCRPQFLFPLRRSPQDHLHIVS 51

Query: 57  AA-KKLSS--RTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAG 113
           A+ KKLSS  R G+FDSKNRR +T +    EE+K+D       +  +  N++ +  EN  
Sbjct: 52  ASNKKLSSVSRIGKFDSKNRRSSTTSTKDQEENKRDGSGGDENVNGEVKNVSTSVGEN-- 109

Query: 114 VIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGAT 173
                DG  +PELPG EPDFWEGPQW  FGFF+QY+WAFGIVFALVACGIAVATYN GA 
Sbjct: 110 ----YDGYFLPELPGDEPDFWEGPQWDGFGFFVQYMWAFGIVFALVACGIAVATYNGGAA 165

Query: 174 DFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           DFKETPAYKES+QSRDLLE P+ASNSDVF+SNPTEVAPSL+
Sbjct: 166 DFKETPAYKESIQSRDLLEEPEASNSDVFDSNPTEVAPSLE 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583792|ref|XP_002532648.1| conserved hypothetical protein [Ricinus communis] gi|223527608|gb|EEF29721.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 148/221 (66%), Gaps = 30/221 (13%)

Query: 1   MSLTIANTAGSGSGSRILYTNPTTDP--QHRRHGITFPTSTCSSRITRAPFRTLHVVSAA 58
           M+L IA   G  SG RI+ TNPT      H R  I FP          AP R  H++ +A
Sbjct: 1   MALFIATGHGGCSGGRIICTNPTKHHPYTHHRPQIVFPL---------APRRAHHIIVSA 51

Query: 59  KKL--SSRTGRFDSKNRRGNTGAITTTEEDKK--DQQQRTAEIGQDS-TNINNNKFENAG 113
           KKL  S+RTGRFDSKN+R    +ITT ++D    D ++  A+I   S  ++ +N ++   
Sbjct: 52  KKLPSSARTGRFDSKNKRS---SITTKDQDDNTDDNEEVNADISSSSSVDVEDNYYD--- 105

Query: 114 VIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGAT 173
                    + +LP  E +FWEGPQW A GFFLQYLWAFGIVFAL+ACGIAVATYNEGAT
Sbjct: 106 --------ILSKLPKDETEFWEGPQWDALGFFLQYLWAFGIVFALIACGIAVATYNEGAT 157

Query: 174 DFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           DFK+TPAYKESVQS++LLE PDAS SDVFESNPTE+APSLD
Sbjct: 158 DFKDTPAYKESVQSQELLEEPDASTSDVFESNPTEIAPSLD 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734196|emb|CBI15443.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 153/219 (69%), Gaps = 18/219 (8%)

Query: 1   MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTS--TCSSRITRAPFRTLHVVSAA 58
           MSLTIA TA +  G  +  T+P+T    RRH +  P+   T  +  T    RT H+V  A
Sbjct: 43  MSLTIAGTAVARGGVGLTTTSPSTHLPIRRHFL-LPSLPFTLITTTTTTRSRTSHIV-FA 100

Query: 59  KKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVIVGV 118
           KKLSSRTGRFDSKNRR  T    TT+E +++Q++  AEI +  +       EN GV  G 
Sbjct: 101 KKLSSRTGRFDSKNRRSGT----TTKEGQQEQREE-AEIKEIGST------ENVGVADGD 149

Query: 119 DGSP---MPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDF 175
           D      +PELPG +PDFWEGPQW A GFF+QYLWAFGIVFAL+ACGIAV TYNEGATDF
Sbjct: 150 DDDDGYFLPELPGDKPDFWEGPQWDALGFFVQYLWAFGIVFALIACGIAVVTYNEGATDF 209

Query: 176 KETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           K+TP Y+ESVQSRDLLE P+ SNSDVFESNPTE APSL+
Sbjct: 210 KKTPVYQESVQSRDLLEEPETSNSDVFESNPTEEAPSLE 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440937|ref|XP_004138240.1| PREDICTED: uncharacterized protein LOC101218989 [Cucumis sativus] gi|449528110|ref|XP_004171049.1| PREDICTED: uncharacterized protein LOC101223826 [Cucumis sativus]

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 155/219 (70%), Gaps = 25/219 (11%)

Query: 1   MSLTIANTAGS-GSGSRILYTNPTTDPQH----RRHGITFPTSTCSSRITRAPFRTLHVV 55
           M LTI N   + G+   ILY   T  P +    RR+ +  P+            RTLH+V
Sbjct: 1   MPLTITNGGATVGTSGGILYRTFTRTPSNYFLFRRNALFHPSKEA---------RTLHLV 51

Query: 56  SAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVI 115
            A KK S RTGRFDSKNR+ +T   T  E+++++++ RTA +   S  +     ENAGV+
Sbjct: 52  QA-KKSSFRTGRFDSKNRKSST---TIKEQEEEEERNRTAGVEMGSPVV-----ENAGVV 102

Query: 116 VGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDF 175
             VD + +P+LPGL+PDFWEGPQW AFGFFL+YLWAFGIVFA++ACGIAV TYNEGATDF
Sbjct: 103 FDVDEN-LPQLPGLQPDFWEGPQWDAFGFFLEYLWAFGIVFAIIACGIAVTTYNEGATDF 161

Query: 176 KETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           KETPAYKESVQ+R++LE P+ASN DVFESNPTEVAPSL+
Sbjct: 162 KETPAYKESVQTREILE-PEASNPDVFESNPTEVAPSLE 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455912|ref|XP_002276428.1| PREDICTED: uncharacterized protein LOC100261000 [Vitis vinifera]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 153/219 (69%), Gaps = 18/219 (8%)

Query: 1   MSLTIANTAGSGSGSRILYTNPTTDPQHRRHGITFPTS--TCSSRITRAPFRTLHVVSAA 58
           MSLTIA TA +  G  +  T+P+T    RRH +  P+   T  +  T    RT H+V  A
Sbjct: 1   MSLTIAGTAVARGGVGLTTTSPSTHLPIRRHFL-LPSLPFTLITTTTTTRSRTSHIV-FA 58

Query: 59  KKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNNKFENAGVIVGV 118
           KKLSSRTGRFDSKNRR  T    TT+E +++Q++  AEI +  +       EN GV  G 
Sbjct: 59  KKLSSRTGRFDSKNRRSGT----TTKEGQQEQREE-AEIKEIGST------ENVGVADGD 107

Query: 119 DGSP---MPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVATYNEGATDF 175
           D      +PELPG +PDFWEGPQW A GFF+QYLWAFGIVFAL+ACGIAV TYNEGATDF
Sbjct: 108 DDDDGYFLPELPGDKPDFWEGPQWDALGFFVQYLWAFGIVFALIACGIAVVTYNEGATDF 167

Query: 176 KETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           K+TP Y+ESVQSRDLLE P+ SNSDVFESNPTE APSL+
Sbjct: 168 KKTPVYQESVQSRDLLEEPETSNSDVFESNPTEEAPSLE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22655144|gb|AAM98162.1| unknown protein [Arabidopsis thaliana] gi|48310646|gb|AAT41859.1| At1g73885 [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/232 (48%), Positives = 142/232 (61%), Gaps = 38/232 (16%)

Query: 1   MSLTIANTAGSGSGSRIL---YTNPTTDPQHRRHGITFPTSTCSSRITRAPFRT-LHVVS 56
           M+LT+++    G G+RI     T+ + +P      + FP           P RT LHVVS
Sbjct: 1   MALTVSS---GGGGARIRCNDLTDSSRNPFSTFRLVNFPN----------PSRTGLHVVS 47

Query: 57  AAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTN------INNNKFE 110
           AAKK S++TGRFDSK RR  T   TTT+E     QQ     G D  N      IN+   +
Sbjct: 48  AAKKPSTQTGRFDSKKRR--TLVPTTTKE-----QQEEGNEGFDGENPPSQIVINDEDGD 100

Query: 111 NAGVIVGVDGSP-------MPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGI 163
              V     G P       + +LPGLEPD +EG +W   GFF+QYLWAFGI+FAL++ G+
Sbjct: 101 RTVVNTRFRGDPKDAPKFAIKDLPGLEPDPFEGEKWDGLGFFVQYLWAFGILFALISGGL 160

Query: 164 AVATYNEGATDFKETPAYKESVQSRDLLEGPDASNS-DVFESNPTEVAPSLD 214
           A  TYNEGATDFKETP YKE++QSRDLL+  ++SNS DVFESNPTEVAPSL+
Sbjct: 161 AAGTYNEGATDFKETPVYKEAIQSRDLLDEAESSNSEDVFESNPTEVAPSLE 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839265|ref|XP_002887514.1| hypothetical protein ARALYDRAFT_339588 [Arabidopsis lyrata subsp. lyrata] gi|297333355|gb|EFH63773.1| hypothetical protein ARALYDRAFT_339588 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/232 (48%), Positives = 142/232 (61%), Gaps = 38/232 (16%)

Query: 1   MSLTIANTAGSGSGSRIL---YTNPTTDPQHRRHGITFPTSTCSSRITRAPFRT-LHVVS 56
           M+LT+++    G G+RI     T+ + +P      + FP+          P RT LHVVS
Sbjct: 1   MALTVSS---GGGGARIRCNDLTDSSRNPFSTFRLVNFPS----------PSRTCLHVVS 47

Query: 57  AAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTN------INNNKFE 110
           AAKK S++TGRFDSK RR  T   TTT+E     Q      G D  N      IN+   +
Sbjct: 48  AAKKPSTQTGRFDSKKRR--TLVPTTTKE-----QSEEGNGGYDGENPPSEIVINDEDGD 100

Query: 111 NAGVIVGVDGSP-------MPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGI 163
              V     G P       + +LPGLEPD +EG +W   GFF+QYLWAFGI+FAL++ G+
Sbjct: 101 RTVVNTRFRGDPKDAPKFALKDLPGLEPDPFEGEKWDGLGFFVQYLWAFGILFALISGGL 160

Query: 164 AVATYNEGATDFKETPAYKESVQSRDLLEGPDASNS-DVFESNPTEVAPSLD 214
           A  TYNEGATDFKETP YKE++QSRDLL+  ++SNS DVFESNPTEVAPSL+
Sbjct: 161 AAGTYNEGATDFKETPVYKEAIQSRDLLDEAESSNSEDVFESNPTEVAPSLE 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115454897|ref|NP_001051049.1| Os03g0710600 [Oryza sativa Japonica Group] gi|62733541|gb|AAX95658.1| hypothetical protein [Oryza sativa Japonica Group] gi|108710708|gb|ABF98503.1| expressed protein [Oryza sativa Japonica Group] gi|113549520|dbj|BAF12963.1| Os03g0710600 [Oryza sativa Japonica Group] gi|125545462|gb|EAY91601.1| hypothetical protein OsI_13236 [Oryza sativa Indica Group] gi|215697069|dbj|BAG91063.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 108/168 (64%), Gaps = 14/168 (8%)

Query: 52  LHVVSAAKK-LSSRTGRF---DSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNINNN 107
           LHV  A +  +SSRT R      KN+R   G++T       D+         D+      
Sbjct: 41  LHVARARRGGVSSRTQRRLEERGKNKRRGGGSVTAPAPPDMDE---------DAAAGEGV 91

Query: 108 KFENAGVIVGVDGSPMPELPGLE-PDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIAVA 166
            +E   +   V  +PMPELP  E PDFWEGPQW A GFF+QY+WAFG+ F LVACG AVA
Sbjct: 92  DWEGEPLGFEVSTTPMPELPDPEKPDFWEGPQWDALGFFVQYMWAFGVFFGLVACGFAVA 151

Query: 167 TYNEGATDFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           TYNEGATDF+ETP+YKESVQ+++  E  ++S SDVFE NPTEVAP+L+
Sbjct: 152 TYNEGATDFRETPSYKESVQTQEFPEESESSGSDVFEGNPTEVAPALE 199

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226495819|ref|NP_001141084.1| uncharacterized protein LOC100273166 [Zea mays] gi|194702566|gb|ACF85367.1| unknown [Zea mays] gi|413933300|gb|AFW67851.1| hypothetical protein ZEAMMB73_287926 [Zea mays]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 109/170 (64%), Gaps = 21/170 (12%)

Query: 51  TLHVVSAAKK-LSSRTGRF----DSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNIN 105
            LHV  A +  +SSRT R       K RRG   A         D  +  AE G  +    
Sbjct: 32  ALHVALARRGGVSSRTQRRLEERGGKKRRGGVAA--------PDVDEDAAEAGTAA---- 79

Query: 106 NNKFENAGVIVGVDGSPMPELPGLE-PDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIA 164
             ++E   +   V   PMPELP  E PDFWEGPQW A GFF+QY+WAFG+VF L+ACG+A
Sbjct: 80  --EWEGEPLGFEVSTEPMPELPNPEKPDFWEGPQWEALGFFVQYMWAFGVVFGLIACGVA 137

Query: 165 VATYNEGATDFKETPAYKESVQSRDLLEGPDASNSDVFESNPTEVAPSLD 214
           VATYN+GATDF++TPAYKES QS++  E  ++S++DVFE NPTEVAP+L+
Sbjct: 138 VATYNDGATDFRDTPAYKES-QSQEFPEESESSSADVFEGNPTEVAPALE 186

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:504956229	192	AT1G73885 "AT1G73885" [Arabido	0.728	0.812	0.488	4.7e-32

TAIR|locus:504956229 AT1G73885 "AT1G73885" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 83/170 (48%), Positives = 106/170 (62%)

Query:    45 TRAPFRTLHVVSAAKKLSSRTGRFDSKNRRGNTGAITTTEEDKKDQQQRTAEIGQDSTNI 104
             +R PF T  +V+      SRT     +   GN G      E+   Q     E G D T +
Sbjct:    23 SRNPFSTFRLVNFPNP--SRT----EQQEEGNEGF---DGENPPSQIVINDEDG-DRTVV 72

Query:   105 NNNKFENAGVIVGVDGSPMPELPGLEPDFWEGPQWGAFGFFLQYLWAFGIVFALVACGIA 164
             N  +F   G         + +LPGLEPD +EG +W   GFF+QYLWAFGI+FAL++ G+A
Sbjct:    73 NT-RFR--GDPKDAPKFAIKDLPGLEPDPFEGEKWDGLGFFVQYLWAFGILFALISGGLA 129

Query:   165 VATYNEGATDFKETPAYKESVQSRDLLEGPDASNS-DVFESNPTEVAPSL 213
               TYNEGATDFKETP YKE++QSRDLL+  ++SNS DVFESNPTEVAP++
Sbjct:   130 AGTYNEGATDFKETPVYKEAIQSRDLLDEAESSNSEDVFESNPTEVAPTI 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       214   0.00085  112 3  11 23  0.43    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.45u 0.10s 21.55t   Elapsed:  00:00:01
  Total cpu time:  21.45u 0.10s 21.55t   Elapsed:  00:00:01
  Start:  Fri May 10 01:20:03 2013   End:  Fri May 10 01:20:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00