Citrus Sinensis ID: 028100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGtaysvdlpflrwktkpflagmCMVTVFGLVYQFSFFIHFQKyvlgrpvvitRPLIFAAAIISTISAVMSLLkdipdedgdkqfgfqsissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVdlsnnastysFYMFIWKLFYAEYLLIHFLR
Flexible Loop (DISEMBL)
MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Low Complexity Region (SEG)
MGTGlaitltlsltslaialslQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLifaaaiistisaVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered region (IsUnstruct)
****LAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDE***KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFL*
Disordered Region (DISOPRED)
*GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered Region (DISEMBL)
MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Disordered Region (DISPRO)
MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	1.0	0.544	0.490	2e-53
B7FA90	404	Probable homogentisate ph	no	no	0.995	0.527	0.450	6e-51
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.971	0.507	0.423	1e-43
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.990	0.518	0.419	4e-40
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.808	0.448	0.344	1e-14
Q0D576	379	Probable homogentisate ph	no	no	0.771	0.435	0.303	6e-12

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/214 (49%), Positives = 146/214 (68%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           + TG+AI  + S+ S  +   + S PL + L V F+LGTAYS++LP LRWK    +A MC
Sbjct: 180 VNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMC 239

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  ++ Q +F++H Q +V GRP++ TRPLIFA A +S  S V++L KDIPD +GDK 
Sbjct: 240 ILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKI 299

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG +S S  LG++ V   CV  L  AY V+++VGA+S F   K++S++GH  LA  LW R
Sbjct: 300 FGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWAR 359

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           A++VDLS+     S YMFIWKLFYAEYLL+ FL+
Sbjct: 360 AKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  200 bits (508), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 145/213 (68%)

Query: 2   GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM 61
            TG+A+    +  S  +  ++ S PL   L + F+LGTAYS++LPFLRWK    +A +C+
Sbjct: 192 ATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCI 251

Query: 62  VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQF 121
           + V  ++ Q +FF+H Q +V  RP V TRPLIFA A ++  S V++L KDIPD +GD+ F
Sbjct: 252 LAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIF 311

Query: 122 GFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRA 181
           G +S S +LG++ V  +CV  L  AY V++++GA+S+    K  +++GH+ LA +LW R+
Sbjct: 312 GIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRS 371

Query: 182 QTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           +++DL++  +  SFYMFIWKLFYAEYLLI  +R
Sbjct: 372 RSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 129/208 (62%)

Query: 7   ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 66
           IT +  +  L  A  + S PL + + +  ++ +AY+VDLP LRWK  P L  +  +    
Sbjct: 203 ITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVA 262

Query: 67  LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSI 126
           +     FF+H Q  V  RP    RPLIF  AI+S  + V++L KDIPD +GD++FG QS+
Sbjct: 263 VTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSL 322

Query: 127 SSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL 186
           S +LG + V  +CV  L   YGV+++VGA+S     K+++++GH+ LA +LW  A++VDL
Sbjct: 323 SLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDL 382

Query: 187 SNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           ++N   +SFYMFIWKL  AEY LI   R
Sbjct: 383 TSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 127/212 (59%)

Query: 3   TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 62
           TG+ I+      S        S PLI  L+V     TAYS+D+P LRWK  PF+A MCM+
Sbjct: 198 TGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMI 257

Query: 63  TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFG 122
           + + L    S+F H Q  VL RP+   R L F  A ++  S  ++L KDIPD +GDK+ G
Sbjct: 258 STWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHG 317

Query: 123 FQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQ 182
             S + +LG++    +CV     A+GV ++ GAS S    K+ + +G++ LA +LW +A+
Sbjct: 318 IDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAK 377

Query: 183 TVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           +VDLS+ AST SFYMFIWKL YA + L+  +R
Sbjct: 378 SVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 7/180 (3%)

Query: 37  LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAA 96
           LGT YSV  P LR K  P  A + + TV G +  F  + H  +  LG P   + P+ F  
Sbjct: 211 LGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFIT 267

Query: 97  AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 156
           + ++  + V+++ KD+PD +GD++F   ++++KLG  N+  L    L   Y VS I  A 
Sbjct: 268 SFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY-VSAISLAF 326

Query: 157 SSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIWKLFYAEYLLIHFL 213
              Q+ +  + I  H  LA  L  +   ++ +N    +   +Y FIW LFYAEYLL  FL
Sbjct: 327 YMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 37  LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAA 96
           LGT YSV  P  R K  P  A + + TV G +  F  + +  +  LG     + P+ F  
Sbjct: 204 LGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPVAFIT 260

Query: 97  AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG-- 154
             ++  + V+++ KD+PD +GD+++   ++++KLG  N+  L    L   Y  ++ V   
Sbjct: 261 CFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFL 320

Query: 155 ASSSFQLVKLVSIIGHSTLA----FLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL 208
              +F+   +V +  H+ LA    F  W+  Q     +  S Y  Y FIW LFYAEY+
Sbjct: 321 MPQAFRRTVMVPV--HAALAVGIIFQTWVLEQAKYTKDAISQY--YRFIWNLFYAEYI 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
295656253	401	homogentisate geranylgeranyl transferase	1.0	0.533	0.532	2e-57
219842170	411	homogentisate geranylgeranyl transferase	1.0	0.520	0.523	2e-56
374461300	239	aromatic prenyltransferase, partial [Epi	0.962	0.861	0.519	4e-56
171190284	317	homogentisate geranylgeranyl transferase	1.0	0.675	0.518	5e-55
359476155	397	PREDICTED: probable homogentisate phytyl	1.0	0.539	0.495	6e-55
224143266	284	predicted protein [Populus trichocarpa]	0.939	0.707	0.527	3e-54
374461278	407	aromatic prenyltransferase [Epimedium ac	1.0	0.525	0.495	2e-53
254596582	407	homogentisate phytyltransferase [Malus x	1.0	0.525	0.490	4e-53
377657555	394	homogentisate phytyltransferase [Brassic	0.990	0.538	0.504	3e-52
147858275	406	hypothetical protein VITISV_043992 [Viti	1.0	0.527	0.485	4e-52

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 145/214 (67%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           MG G AI     L S A+ +  QSPP+ F L++ FL G+AYSV+LP LRWK   FLA   
Sbjct: 188 MGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFS 247

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  +    +FF H QKYVLGRP+V  R L FA   IS  + V++L KDIPD DGD+ 
Sbjct: 248 ILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRD 307

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG QS S  LG++ V  LC+  L  AY  ++++GASSSF L KLV++IGH TLA +LW R
Sbjct: 308 FGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRR 367

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           A +V+L +N+S  SFYM IWKLFYAEYLLI F+R
Sbjct: 368 ANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 152/216 (70%), Gaps = 2/216 (0%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           M TG+ I     L SL + ++ QSPPL+  L++ F LG+ YS++LPFLRWK   FLA  C
Sbjct: 196 MATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASC 255

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  +V Q +FF+H QK+VLG+ + I R L+FA A +   SA ++L KDIPD +GD+ 
Sbjct: 256 ILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRD 315

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL--VKLVSIIGHSTLAFLLW 178
           +G QS S  LG+E VL LCV  L  AYG +V+ GASS   L  VKL+++IGHST+A++LW
Sbjct: 316 YGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILW 375

Query: 179 LRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           ++AQ VDL++  S  SFYMFIWKLFYAEY LI F+R
Sbjct: 376 MKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 147/206 (71%)

Query: 4   GLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT 63
           G AI     +TS A+ +  +SPPL++ ++  FLL TAYS+ LPFLRWK    L  +C+++
Sbjct: 21  GTAIVAISPITSFAMGIMFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIIS 80

Query: 64  VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF 123
           V  LV    FF+H QKYVLGRP +IT+P++FA A ++ IS V++++KDIPD DGD+ FG 
Sbjct: 81  VRALVIPLGFFLHMQKYVLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGL 140

Query: 124 QSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQT 183
           QS++ +LGKE V  L V  L  AYG +VIVGASS+    K+++++GH  LA +LW RA+T
Sbjct: 141 QSLTIRLGKEKVFWLGVSTLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRART 200

Query: 184 VDLSNNASTYSFYMFIWKLFYAEYLL 209
           V +S  AST SFY+F+WKL YAEYLL
Sbjct: 201 VVISEPASTLSFYLFVWKLLYAEYLL 226

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/214 (51%), Positives = 145/214 (67%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           M TG AI     L S+ + +  QSPP+++ L+V F  GTAYS+D+P  RWK   FLA MC
Sbjct: 104 METGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMC 163

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           +V V  +  Q + F H Q+YVLGRPV+ +R L FA   ++    V++L KDIPD DGD+ 
Sbjct: 164 IVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRD 223

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG Q+I+  LGK+ V  LC+  L  AYG +V++G+SSS  L KLV++ GH  LA +LW R
Sbjct: 224 FGIQTITVTLGKKRVFWLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSR 283

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           A +VDL +N S  SFYMFIWKLFYAEYLLI F+R
Sbjct: 284 AISVDLESNKSITSFYMFIWKLFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 143/214 (66%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           M TG  I     L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C
Sbjct: 184 METGSQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASC 243

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  +V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++
Sbjct: 244 ILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDRE 303

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG QS + KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+R
Sbjct: 304 FGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVR 363

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           AQ+VDLS+  +  SFYMFIWKLFYAEY LI  +R
Sbjct: 364 AQSVDLSSKEAVTSFYMFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 142/201 (70%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           MGTG+AI     L S A+ +  QSP L   L++  +LG+ YS++LPFLRWK + FLA  C
Sbjct: 84  MGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLGSVYSIELPFLRWKKQAFLAATC 143

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  +V Q +FF+H QK+VLG+  V+TR L+FA A +   SAV++L KDIPD DGD+ 
Sbjct: 144 IMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRD 203

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           +G QS S  LG+E V  LCV  L  AYG +V+VGASS+F   K ++I+GH TLAF+LWLR
Sbjct: 204 YGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLR 263

Query: 181 AQTVDLSNNASTYSFYMFIWK 201
           A++VDL++  S  SFYMFIWK
Sbjct: 264 ARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 150/214 (70%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           +GTG+ I    ++ S  +   + S PL++ L + F+LGTAYS++LP LRWK    +A MC
Sbjct: 194 IGTGILIVAAFAVMSFWLGWFVGSGPLLWALSISFILGTAYSINLPLLRWKRFALVAAMC 253

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  ++ Q +FF+H Q +V  RP ++TRPLIFA A +S  S V++L KDIPD +GD  
Sbjct: 254 ILAVRAVIVQLAFFLHIQTFVYRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAI 313

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG +S + +LG++ V  +CVY L  AYGV+V+VGA+S   L KLV+++GH  LA +LWL 
Sbjct: 314 FGIRSFTVRLGQKRVFWICVYLLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLASILWLN 373

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           A++VDL+N  +  SFYMFIWKLFYAEYLLI  +R
Sbjct: 374 AKSVDLTNKTAITSFYMFIWKLFYAEYLLIPLVR 407

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/214 (49%), Positives = 149/214 (69%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           +GTG+ I  +  + S  +   + S PL + L V F+LGTAYS++LP LRWK    +A MC
Sbjct: 194 VGTGIMIVTSFLIMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVVAAMC 253

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  ++ Q +FF+H Q +V  RP   +RPLIFA A +S  S V++L KDIPD DGDK 
Sbjct: 254 ILAVRAVIVQLAFFLHMQMHVYKRPAAFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKI 313

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG +S + ++G++ V  +C+  L  AYGV+V++GASS F L K V+++GH+ LA +LW R
Sbjct: 314 FGIRSFTVRMGQKRVFWICISLLEMAYGVAVLLGASSGFMLSKCVTVLGHTILALVLWNR 373

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           A++VDL++ A+  SFYMFIWKLFYAEYLLI  +R
Sbjct: 374 AKSVDLNSKAAITSFYMFIWKLFYAEYLLIPLVR 407

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 145/212 (68%)

Query: 3   TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 62
           TG+AI  + S+ S  +   + S PL + L V F+LGTAYS++LP LRWK    +A MC++
Sbjct: 183 TGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCIL 242

Query: 63  TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFG 122
            V  ++ Q +F++H Q +V GRPV+ TRPLIFA A +S  S V++L KDIPD +GDK FG
Sbjct: 243 AVRAIIVQIAFYLHIQTHVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFG 302

Query: 123 FQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQ 182
            +S S  LG+E V   CV  L  AY V+++VGA+S F   K++S++GH  LA  LW RA+
Sbjct: 303 IRSFSVTLGQERVFWTCVSLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAK 362

Query: 183 TVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           +VDLS+     S YMFIWKLFYAEYLL+ FL+
Sbjct: 363 SVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 394

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/214 (48%), Positives = 148/214 (69%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           +GTG+ I  + ++ S  +   + S PL + L V F+LGTAYS+DLP LRWK    +A MC
Sbjct: 193 VGTGVGIVTSFAVMSFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMC 252

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  ++ Q +F++H Q +V GRP V +RPLIFA A +S  S V++L KDIPD +GDK 
Sbjct: 253 ILAVRAVIVQIAFYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKI 312

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG +S S +LG++ V  +C+  L  AYG +V VGA+SS    KLV+++GH+ LA +LW R
Sbjct: 313 FGIRSFSVRLGQKRVFWICILLLEMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTR 372

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           A+++DL + A+  SFYMFIW+LFYAEY LI  +R
Sbjct: 373 AKSIDLKSKAAITSFYMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.883	0.480	0.486	2.3e-46
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.883	0.460	0.412	2.1e-38
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.883	0.464	0.412	5.5e-38
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.859	0.468	0.333	6.2e-17

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 92/189 (48%), Positives = 126/189 (66%)

Query:    26 PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 85
             PL + L V F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +F++H Q +V GRP
Sbjct:   205 PLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query:    86 VVITRPLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 145
             ++ TRPL            V++L KDIPD +GDK FG +S S  LG++ V   CV  L  
Sbjct:   265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324

Query:   146 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 205
             AY V+++VGA+S F   K++S++GH  LA  LW RA++VDLS+     S YMFIWKLFYA
Sbjct:   325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYA 384

Query:   206 EYLLIHFLR 214
             EYLL+ FL+
Sbjct:   385 EYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 78/189 (41%), Positives = 114/189 (60%)

Query:    26 PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 85
             PL + + +  ++ +AY+VDLP LRWK  P L  +  +    +     FF+H Q  V  RP
Sbjct:   222 PLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRP 281

Query:    86 VVITRPLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 145
                 RPL            V++L KDIPD +GD++FG QS+S +LG + V  +CV  L  
Sbjct:   282 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEM 341

Query:   146 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 205
              YGV+++VGA+S     K+++++GH+ LA +LW  A++VDL++N   +SFYMFIWKL  A
Sbjct:   342 TYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTA 401

Query:   206 EYLLIHFLR 214
             EY LI   R
Sbjct:   402 EYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 78/189 (41%), Positives = 111/189 (58%)

Query:    26 PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 85
             PL + + +  +   AY+VDLP LRWK  P L  +  +    +     FF+H Q  V  RP
Sbjct:   219 PLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRP 278

Query:    86 VVITRPLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 145
                 RPL            V++L KDIPD +GD++FG QS+S +LG + V  +CV  L  
Sbjct:   279 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEM 338

Query:   146 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 205
             AYGV+++VGA+S     K+++++GH+ LA +LW  A++ DL++N    SFYMFIWKL  A
Sbjct:   339 AYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTA 398

Query:   206 EYLLIHFLR 214
             EY LI   R
Sbjct:   399 EYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 6.2e-17, P = 6.2e-17
 Identities = 64/192 (33%), Positives = 93/192 (48%)

Query:    26 PLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGR 84
             P I  L  +   LGT YSV  P LR K  P  A + + TV G +  F  + H  +  LG 
Sbjct:   206 PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGL 262

Query:    85 PVVITRPLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 144
             P   + P+            V+++ KD+PD +GD++F   ++++KLG  N+  L    L 
Sbjct:   263 PFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLL 322

Query:   145 FAYGVSVIVGASSSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIWK 201
               Y VS I  A    Q+ +  + I  H  LA  L  +   ++ +N    +   +Y FIW 
Sbjct:   323 VNY-VSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWN 381

Query:   202 LFYAEYLLIHFL 213
             LFYAEYLL  FL
Sbjct:   382 LFYAEYLLFPFL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.145   0.455    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       184   0.00078  110 3  11 21  0.45    31
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  156 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.13u 0.08s 16.21t   Elapsed:  00:00:01
  Total cpu time:  16.13u 0.08s 16.21t   Elapsed:  00:00:01
  Start:  Fri May 10 02:34:12 2013   End:  Fri May 10 02:34:13 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-81
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-39
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-06

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  244 bits (624), Expect = 1e-81
 Identities = 108/214 (50%), Positives = 147/214 (68%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
           + TG+AI  + ++ S  +   + S PL + L V F+LGTAYS++LP LRWK     A  C
Sbjct: 67  VATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASC 126

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           ++ V  +V Q +FF+H Q +VLGRP V TRPLIFA A +   S V++L KDIPD +GD+ 
Sbjct: 127 ILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRI 186

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
           FG +S S +LG++ V  LCV  L  AY  +++VGASSSF   K+++++GH  LA +LW R
Sbjct: 187 FGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQR 246

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 214
           AQ+VDLS+ A+  SFYMFIWKLFYAEY LI  +R
Sbjct: 247 AQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  137 bits (346), Expect = 2e-39
 Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 3   TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV 62
            G  I +   + +L +A  L  P L+  + +  L+GTAYS  LP +R K  P LA +C+ 
Sbjct: 99  QGQRIVIITGILALILAA-LLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIF 155

Query: 63  TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFG 122
           TV G++     F+HFQ ++LG  V+I   +      +   +  +++ KDIPD +GD+Q+ 
Sbjct: 156 TVRGVIVNLGLFLHFQ-WLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQ 214

Query: 123 FQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQ 182
             + + +LGK+ V +L  + L   Y   + VG  S   +     I+ H  L  LLW R+Q
Sbjct: 215 ITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ 274

Query: 183 TVDLSNNASTYSFYMFIWKLFYAEYLL 209
            VDL +  +   FY FIWKLF+ EYLL
Sbjct: 275 RVDLQDKQAIAQFYQFIWKLFFLEYLL 301

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 16/205 (7%)

Query: 1   MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 60
               L + L L L  L +AL L    L+ GL+   L G  YS   P LR K +P L  + 
Sbjct: 69  PREALLLGLALLLLGLLLALLLGPLLLLLGLLGLLL-GLLYS---PPLRLKRRPLLGELV 124

Query: 61  MVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQ 120
           +   FGL+     +             I  PL+  A  +  +S  + L  DI D +GD++
Sbjct: 125 VGLAFGLLILLGAYA--------VGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRK 176

Query: 121 FGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLR 180
            G +++  +LG++  L L    L  A  + +++    +     L+ ++    LA  L + 
Sbjct: 177 AGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAP----LLLLLAVLLLALALLVA 232

Query: 181 AQTVDLSNNASTYSFYMFIWKLFYA 205
           A+ +   N       ++FI  LF  
Sbjct: 233 ARLLRRRNPEEPARTFLFIALLFGL 257

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.84
PRK12872	285	ubiA prenyltransferase; Reviewed	99.83
PRK13105	282	ubiA prenyltransferase; Reviewed	99.82
PRK13595	292	ubiA prenyltransferase; Provisional	99.81
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.8
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.8
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.79
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.78
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.78
PRK05951	296	ubiA prenyltransferase; Reviewed	99.78
PRK13591	307	ubiA prenyltransferase; Provisional	99.77
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.77
PLN00012	375	chlorophyll synthetase; Provisional	99.77
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.75
PRK12884	279	ubiA prenyltransferase; Reviewed	99.75
PRK12882	276	ubiA prenyltransferase; Reviewed	99.75
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.75
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.74
PLN02922	315	prenyltransferase	99.73
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.72
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.7
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.68
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.67
PRK12875	282	ubiA prenyltransferase; Reviewed	99.65
PRK13106	300	ubiA prenyltransferase; Reviewed	99.63
PRK12888	284	ubiA prenyltransferase; Reviewed	99.62
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.62
PRK12895	286	ubiA prenyltransferase; Reviewed	99.61
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.6
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.6
PRK12886	291	ubiA prenyltransferase; Reviewed	99.53
PRK12876	300	ubiA prenyltransferase; Reviewed	99.51
PRK12874	291	ubiA prenyltransferase; Reviewed	99.5
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.5
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.47
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.47
PRK12871	297	ubiA prenyltransferase; Reviewed	99.37
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.35
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.34
PRK13592	299	ubiA prenyltransferase; Provisional	99.33
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.24
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.2
PRK12873	294	ubiA prenyltransferase; Reviewed	99.2
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.03
PLN02776	341	prenyltransferase	97.74
PRK08238	479	hypothetical protein; Validated	97.09
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	97.04
KOG4581	359	consensus Predicted membrane protein [Function unk	93.95
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	90.73
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	88.75

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=6.5e-65  Score=448.93  Aligned_cols=214  Identities=50%  Similarity=0.905  Sum_probs=207.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 028100            1 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY   80 (214)
Q Consensus         1 ~~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~   80 (214)
                      .++|+.++.++.++|+.+++..|++|+++++..++++|++||+|+||+|+||+|+++++|+.++|+.++|+|+|.|++++
T Consensus        67 ~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~  146 (280)
T PLN02878         67 VATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH  146 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHH
Confidence            37899999999999999999999889999998999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 028100           81 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ  160 (214)
Q Consensus        81 ~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~  160 (214)
                      ++|++..+++++++.+.++++|+.+++++||+||+||||++|+||+|+++|+|+++++|+.++.+||++++.+|++++..
T Consensus       147 ~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~  226 (280)
T PLN02878        147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFL  226 (280)
T ss_pred             HhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99988888889999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcC
Q 028100          161 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR  214 (214)
Q Consensus       161 ~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~~ey~l~p~~~  214 (214)
                      +++.+|+.||++++..+|+|+++||++||++++|||||||||||+||+++|+.|
T Consensus       227 ~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        227 WSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=5.3e-53  Score=378.80  Aligned_cols=209  Identities=34%  Similarity=0.611  Sum_probs=195.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++++.++.++.++|+.+++..| ++.++..+++.+++++||  .||+|+||+|+++++|++.++|.++++|.|.|.+...
T Consensus        98 ~~a~~~~~~~~~lal~la~~~~-~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~  174 (308)
T PRK12887         98 RQGQRIVIITGILALILAALLG-PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL  174 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999865 677777778999999999  5999999999999999999999999999998876544


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       +.+..+++++++.++++.+++.+++++||+||+||||+.|+||+|+++|+|++.++|+.++.++|+..++.|+.+...+
T Consensus       175 -~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~  253 (308)
T PRK12887        175 -GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV  253 (308)
T ss_pred             -hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence             5555677888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcC
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR  214 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~~ey~l~p~~~  214 (214)
                      ++..++.||++++..+|+|++++|++||+||+|||||||||||+||+++|+.|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        254 NPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999975

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.84  E-value=1.7e-19  Score=159.39  Aligned_cols=144  Identities=19%  Similarity=0.221  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++..+...+..+++.++...+.+.......++.+++++||  .||+|+||++++++..+....+.....+     +...
T Consensus        83 ~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~-----~~~~  155 (283)
T TIGR01476        83 REVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMA-----GHAI  155 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHH-----HHHH
Confidence            57788888889999999888776654544557888899999  5999999999988876554322111111     1111


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA  155 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~  155 (214)
                      .+ +  .+...++....+++++.+++..||+||+||||+.|+||+|+++|+|++.+++..++.++|...+....
T Consensus       156 ~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  226 (283)
T TIGR01476       156 FA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLL  226 (283)
T ss_pred             hC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12 2  33444555566778899999999999999999999999999999999999999999888877764333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=1.1e-18  Score=153.65  Aligned_cols=152  Identities=20%  Similarity=0.282  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCcc-ccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Q 028100            7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP   85 (214)
Q Consensus         7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPl-RlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~   85 (214)
                      .......+|+.+.....+++......++.++++.||.  ||. |+||.|..+|.++...+|.....+.+.+.     +  
T Consensus        86 l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~-----~--  156 (285)
T PRK12872         86 LNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY-----Q--  156 (285)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc-----c--
Confidence            3444445555554444557666666678889999995  665 79999999999999888755544332221     1  


Q ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 028100           86 VVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLV  165 (214)
Q Consensus        86 ~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~  165 (214)
                      ..++...+....+.....+..++.||+||+||||+.|+||+|+++|+|++.+++..+....++..+........++....
T Consensus       157 ~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (285)
T PRK12872        157 LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLV  236 (285)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            12334455566677778899999999999999999999999999999999999999999988888765555433333333


Q ss_pred             HH
Q 028100          166 SI  167 (214)
Q Consensus       166 ~~  167 (214)
                      ..
T Consensus       237 ~~  238 (285)
T PRK12872        237 LL  238 (285)
T ss_pred             HH
Confidence            33

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.82  E-value=2.2e-18  Score=153.51  Aligned_cols=130  Identities=23%  Similarity=0.212  Sum_probs=98.4

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHHH
Q 028100           14 TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI   93 (214)
Q Consensus        14 lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l~   93 (214)
                      .++.+... ++++.+....++++.++.||  .||.|+|++|+.++++..........+|.+..      +.  ..+...+
T Consensus        95 ~~l~l~~~-~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~------~~--~~~~~~~  163 (282)
T PRK13105         95 FLVVLLAV-GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVLA------GA--PFTAALW  163 (282)
T ss_pred             HHHHHHHH-hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHHh------hc--cccHHHH
Confidence            45555443 45665555568999999999  59999999999999765554332222333221      22  2334556


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 028100           94 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  154 (214)
Q Consensus        94 ~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g  154 (214)
                      +....+.+++.+++++||+||+||||+.|+||+|+++|+|++.+++..+..++++..+..|
T Consensus       164 l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        164 AVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666778889999999999999999999999999999999999999999999988877544

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.81  E-value=3.1e-18  Score=153.07  Aligned_cols=167  Identities=22%  Similarity=0.308  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHH
Q 028100           13 LTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL   92 (214)
Q Consensus        13 ~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l   92 (214)
                      .+++++++..+ +.......++.+++++||  .||+|+|++|+++|+|... .+  .+.+.    +..+.|.+.  +...
T Consensus       107 ~~~l~la~~l~-~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~~-~g--~p~~~----~~~~~g~~~--~~~~  174 (292)
T PRK13595        107 PFLLYLALLLP-PAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSNAA-YA--LPLAL----PALALGAPV--PWPP  174 (292)
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHHHH-HH--HHHHH----HHHHcCCcc--hHHH
Confidence            34667777755 444445557889999999  5999999999999998632 22  12211    222223221  1122


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Q 028100           93 IFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHST  172 (214)
Q Consensus        93 ~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~  172 (214)
                       +  ....+++.+.+++||+||+||||+.|+||+|+++|+|++.++|..+..++-....  ....+....   ......+
T Consensus       175 -l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~--~~~~~~~~~---~~~~~~~  246 (292)
T PRK13595        175 -L--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW--PVSRLTALA---LWLICGG  246 (292)
T ss_pred             -H--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH--HhcchHHHH---HHHHHHH
Confidence             2  2235677999999999999999999999999999999999999866655422222  111222221   2222222


Q ss_pred             HHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 028100          173 LAFLLWLRAQTVDLSNNASTYSFYMFIWKLFY  204 (214)
Q Consensus       173 l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~  204 (214)
                      .+.-+|     -|.+..++=..+=.|+|--+-
T Consensus       247 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  273 (292)
T PRK13595        247 MALALW-----RRPTPETAHRLYPLSIVTPWI  273 (292)
T ss_pred             HHHHHh-----cCCCHHHHhccchHHHHHhHH
Confidence            222233     555555555556666775443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.80  E-value=4.7e-18  Score=154.37  Aligned_cols=147  Identities=16%  Similarity=0.269  Sum_probs=104.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF   74 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g-------~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f   74 (214)
                      ++++.....+..+|+.++..++       +++.+...+++.+++++||.  ||+|+||+++.++..+....+.....+  
T Consensus        95 ~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~--  170 (331)
T PRK12392         95 KEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFLS--  170 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHHH--
Confidence            4566777777777766666543       23333444578889999995  999999999888776444433222111  


Q ss_pred             HHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 028100           75 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  154 (214)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g  154 (214)
                         .....+   ..+.+.+.......+++.+++++||++|+||||+.|+||+|+++|+|++++++.....+..+..+..+
T Consensus       171 ---~~a~~g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~  244 (331)
T PRK12392        171 ---ANALFS---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLA  244 (331)
T ss_pred             ---HHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHH
Confidence               111223   23445555666677889999999999999999999999999999999999999877767766666666


Q ss_pred             Hhhh
Q 028100          155 ASSS  158 (214)
Q Consensus       155 ~~~~  158 (214)
                      ....
T Consensus       245 ~~~~  248 (331)
T PRK12392        245 WSWG  248 (331)
T ss_pred             HHhc
Confidence            6543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.80  E-value=9e-18  Score=150.65  Aligned_cols=141  Identities=19%  Similarity=0.296  Sum_probs=101.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQ------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI   75 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g------~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~   75 (214)
                      +++......+..+|+.++....      +++.+...+++.+++++||.  ||+|+||++++|+..+....+.....+.+ 
T Consensus        99 ~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~~~~~~~~-  175 (306)
T TIGR02056        99 PEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIALPWWAGH-  175 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence            3555566666666666655432      24445555678889999995  99999999999987655443322222211 


Q ss_pred             HHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHH
Q 028100           76 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  152 (214)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~  152 (214)
                       .   +.+   .++...++....+++++.++++.||++|+||||+.|+||+|+++|+|++.+++..++...|...+.
T Consensus       176 -a---~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~  245 (306)
T TIGR02056       176 -A---LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA  245 (306)
T ss_pred             -H---HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence             1   112   234455566667788999999999999999999999999999999999999999888887766554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.79  E-value=1.6e-17  Score=141.88  Aligned_cols=124  Identities=29%  Similarity=0.459  Sum_probs=97.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++++.....+.++++.+++..+ ++......++.+++++||   ||+|+||++++++.++..+.+.....|.+..     
T Consensus        70 ~~~~~~~~~~~~l~l~l~~~~~-~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~-----  140 (257)
T PF01040_consen   70 RQALIFALILLLLGLLLALLLG-PWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA-----  140 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc-----
Confidence            4677788888899999887766 555555556777889999   9999999999999988887765544444421     


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  137 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~  137 (214)
                       +.  ..+.+.+....+..++...+...+|++|+||||+.|+||+|+++|+|++..
T Consensus       141 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  141 -GG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             -CC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence             22  124455566566678888888999999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.78  E-value=5.9e-17  Score=143.73  Aligned_cols=191  Identities=20%  Similarity=0.271  Sum_probs=148.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++|+.+.+.+.++++.+++..+... +.....+.++.++|.      ++||.+.+++.++..+.+.....|....     
T Consensus        94 ~~a~~~~~~~~~~~~~~a~~l~~~~-~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a~-----  161 (289)
T COG0382          94 KEALLLAILLLLLGLALALLLNPLA-FLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAAV-----  161 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHHH-----
Confidence            5789999999999999999977433 555568999999994      8999999999999888776655555422     


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       +..  .+.+.+++..+..+++.+.+++||+||+||||+.|+||.|+++|+|++.+++.... .........+...... 
T Consensus       162 -~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~-  236 (289)
T COG0382         162 -GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL-  236 (289)
T ss_pred             -hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc-
Confidence             211  33455666677789999999999999999999999999999999999999998777 4444444444432211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhh
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI  210 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwklf~~ey~l~  210 (214)
                       ...-..++...+..+++|.+.+|.++++....++..-..+-.......
T Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (289)
T COG0382         237 -GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL  284 (289)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence             146677888888999999999999988888888888777666655543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.78  E-value=2.4e-17  Score=146.13  Aligned_cols=144  Identities=17%  Similarity=0.165  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHH----HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHH
Q 028100            3 TGLAITLTLSL----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ   78 (214)
Q Consensus         3 ~~~~iv~~~~~----lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~   78 (214)
                      +++.....+..    +|+++.... +++.....+++.+++++||  .||.|+|+++ +|+..+....|.....+.+.. +
T Consensus        88 ~~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~g-lge~~~~~~~G~~~~~~~~~~-~  162 (293)
T PRK06080         88 QVKRAAIAFFGLAALLGLYLVAVS-GWWLLLLGLLCIAAAILYT--GGPKPYGYTG-LGELFVGVFFGLVIVLGTYYL-Q  162 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhc--CCCCccCCCC-cHHHHHHHHHHHHHHHHHHHH-h
Confidence            44444444444    445554443 3555655567888999999  5999999998 577766666664444433211 2


Q ss_pred             HHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100           79 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  157 (214)
Q Consensus        79 ~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~  157 (214)
                      +      ...+.+.++......+++..+.+.||+||+||||+.|+||+|+++|+|++.+++..+..++|+..+...+..
T Consensus       163 ~------~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        163 A------GTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             c------CCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1      123456667777888999999999999999999999999999999999999999999999999888776654

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.78  E-value=1.1e-16  Score=142.82  Aligned_cols=164  Identities=15%  Similarity=0.213  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Q 028100           24 SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS  103 (214)
Q Consensus        24 ~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~~l~~~~~f~~~fa  103 (214)
                      +++.+...+++..+++.||.  ||+|+|+++ +|...+....|.....|.+.. ++   +   .++.+.+.......+.+
T Consensus       115 ~~~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~---~---~~~~~~~~~sl~~~l~~  184 (296)
T PRK05951        115 GIGAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WL---G---NLSSPNLLAGVPLGLLM  184 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-Hh---C---cccHHHHHHHHHHHHHH
Confidence            35555555688999999995  999999987 777666666665555555433 22   1   12334445555667778


Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 028100          104 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQT  183 (214)
Q Consensus       104 ~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~h~~l~~~l~~~~~~  183 (214)
                      ..+...||+||+|+||+.|+||+|+++|+|++ ++.......+|+..+...+....++.......++-.....+.++.++
T Consensus       185 ~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~  263 (296)
T PRK05951        185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRK  263 (296)
T ss_pred             HHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88899999999999999999999999999999 77667777788877766666533444455566666666666677777


Q ss_pred             ccCCCchhHHHHHHH
Q 028100          184 VDLSNNASTYSFYMF  198 (214)
Q Consensus       184 vd~~~~~~~~~fy~~  198 (214)
                      .|.++++...+.++.
T Consensus       264 ~~~~~~~~~~~~~~~  278 (296)
T PRK05951        264 FPPDPDEATVQLFML  278 (296)
T ss_pred             CcccccHHHHHHHHH
Confidence            787777777777765

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.77  E-value=1.8e-17  Score=148.95  Aligned_cols=176  Identities=16%  Similarity=0.135  Sum_probs=122.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC--CCCc--cccccchhhHHHHHHHHhhhhhhHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV--DLPF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHF   77 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~--~lPP--lRlKr~pll~~l~I~~v~~~iv~~g~f~~~   77 (214)
                      +.+....+.+.++|+++++..| ++.+  .+++.+.++.||.  ..||  +|+|+.+..||+.++...|.....+    .
T Consensus        99 ~~a~~ls~la~llGl~La~~~g-~~ll--~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~----~  171 (307)
T PRK13591         99 KIGLLVSLLAFLLGTYILAMDG-MLLL--AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI----A  171 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHH--HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHH----H
Confidence            3467778888899999998855 4432  3578889999994  2225  5999999999999988887533211    1


Q ss_pred             HHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100           78 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  157 (214)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~  157 (214)
                      +... +.   + .+......+.....++++++||++|+||||+.|+||+|+++|+|++.++...+..++|+..+...+..
T Consensus       172 g~~~-~~---~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g  246 (307)
T PRK13591        172 GSYC-GS---L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFG  246 (307)
T ss_pred             Hhhh-hh---H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 10   1 11112222333344788899999999999999999999999999999999999999998888666665


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 028100          158 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNN  189 (214)
Q Consensus       158 ~~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~~  189 (214)
                      -.++...+.+-+-.+-...+|+-+++.|-+++
T Consensus       247 ~l~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~  278 (307)
T PRK13591        247 VIAFEPIILLYSFVCGLICIQVYSSPFENEPS  278 (307)
T ss_pred             HhccCchhhHHHHHHHHHHHHHHcCCcccCcH
Confidence            44555555555555555666766766655543

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.77  E-value=6.5e-17  Score=145.55  Aligned_cols=141  Identities=21%  Similarity=0.285  Sum_probs=106.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+..+|+.++...+ ++.....+++.+++++||.  ||+++||++++++..+....+.+...+-     +..
T Consensus       110 ~~a~~~~~~l~~~~~~l~~~l~-~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g-----~~~  181 (314)
T PRK07566        110 RWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAG-----AAA  181 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHH-----HHH
Confidence            5677788888888988888866 5545444567888999995  9999999999898876554432222211     111


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  151 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i  151 (214)
                      .+ +...+...++.....++.+.++...||++|+|+||+.|+||+|+++|+|++.+++..++...|...+
T Consensus       182 ~~-~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~  250 (314)
T PRK07566        182 FG-AGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI  250 (314)
T ss_pred             hc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence            12 1123445556666667788899999999999999999999999999999999999888888887764

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.77  E-value=8.1e-17  Score=148.50  Aligned_cols=139  Identities=19%  Similarity=0.287  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHH
Q 028100            3 TGLAITLTLSLTSLAIALSLQ------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH   76 (214)
Q Consensus         3 ~~~~iv~~~~~lg~~la~~~g------~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~   76 (214)
                      ++......+..+++.++..+.      ++..+...+++.+++++||.  ||+++||++++|++.+.+..+.+..++.  +
T Consensus       169 ~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~~lp~~~g--~  244 (375)
T PLN00012        169 EVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAG--Q  244 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHHHHHHHHHH--H
Confidence            344433444444444444431      23344444568888999995  9999999999999764333321111111  1


Q ss_pred             HHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100           77 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  151 (214)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i  151 (214)
                         .+.|   .++...++....+++++.++++.||++|+||||+.|+||+|+++|+|++.+++..++.+.+...+
T Consensus       245 ---a~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        245 ---ALFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             ---HHcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence               1212   23445556666778899999999999999999999999999999999999999876766655433

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.75  E-value=5.7e-17  Score=145.78  Aligned_cols=140  Identities=18%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 028100            7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPV   86 (214)
Q Consensus         7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~   86 (214)
                      ......++|+++.... +|+++....++.+++++||.  ||+|+|++| +|...+....|.+...|.|.. |+      .
T Consensus       102 ~~~~a~~~Gl~L~~~~-g~~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv-~t------~  170 (304)
T PRK07419        102 FLLLGLLGILAIALQS-DWTVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVAAALYS-QT------P  170 (304)
T ss_pred             HHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-hc------C
Confidence            3344556667777664 47777666789999999995  999999999 588777777775555555422 32      2


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100           87 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  157 (214)
Q Consensus        87 ~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~  157 (214)
                      .++...+......++.+..+...||+||+|.||+.|+||+|+++|+|++.++...+...+|+..+......
T Consensus       171 ~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g  241 (304)
T PRK07419        171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLG  241 (304)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556667777788899999999999999999999999999999999999999999999999888665554

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=2.6e-16  Score=138.51  Aligned_cols=140  Identities=20%  Similarity=0.280  Sum_probs=104.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++++.....+.++|+.++...+ +......+++.++++.||.     ++||++++++.++....+.....|..     ..
T Consensus        82 ~~a~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~-----~~  150 (279)
T PRK12884         82 REALLLAILLFILGLIAAYLIS-PLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGI-----AV  150 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHH-----Hh
Confidence            5678888888999999888876 4444444567888999995     79999999998877766533332222     11


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  156 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~  156 (214)
                       +...   .+.+.......+++.+.++.||+||+||||+.|+||+|+++|+|++.+++.......++..+..+..
T Consensus       151 -~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~  221 (279)
T PRK12884        151 -GELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLF  221 (279)
T ss_pred             -CCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2221   1344444556677888899999999999999999999999999999999988887777665544443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=2.3e-16  Score=139.02  Aligned_cols=132  Identities=21%  Similarity=0.263  Sum_probs=94.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++|+.+++.++ +.......++.+++++||.     |+||+|.++|.++....|....+|..      .
T Consensus        83 ~~a~~~~~~l~~~g~~~~~~l~-~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~------~  150 (276)
T PRK12882         83 RGALAFSILLFAAGVALAFLLP-PLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA------A  150 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH------H
Confidence            5788888999999999988866 4334434466777999995     89999999999877666543333321      1


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY  147 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y  147 (214)
                      .+...  +.+.+.......+.....++.||+||+||||+.|+||+|+++|+|++.+++........
T Consensus       151 ~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~  214 (276)
T PRK12882        151 VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAV  214 (276)
T ss_pred             hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHH
Confidence            13111  11222333344456778899999999999999999999999999999998776655443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.75  E-value=1.2e-16  Score=142.41  Aligned_cols=140  Identities=15%  Similarity=0.131  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Q 028100            7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPV   86 (214)
Q Consensus         7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~   86 (214)
                      ...+..++|.++....| |+++....++.+.++.||.  ||+++|++| +|...+....|.+...|.|. .|+      .
T Consensus        89 ~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-vqt------~  157 (285)
T TIGR02235        89 FLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAALY-AQS------Q  157 (285)
T ss_pred             HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHHH-HhC------C
Confidence            33445566677777644 7777666789999999995  999999999 57777777777555555542 233      2


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100           87 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  157 (214)
Q Consensus        87 ~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~  157 (214)
                      .++...+......++.+..+...||+||+|.||+.|+||+|+++|+|++.++...++..+|+..+..-...
T Consensus       158 ~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  228 (285)
T TIGR02235       158 SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG  228 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556667777888999999999999999999999999999999999999999999999999877554543

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.74  E-value=6.6e-16  Score=137.59  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 028100           10 TLSLTSLAIALSLQSP------PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLG   83 (214)
Q Consensus        10 ~~~~lg~~la~~~g~~------~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~   83 (214)
                      .+.++|+++.+..| +      ++.....++.+.+++||.  ||.|+|++| +|...+....|.+...|.+. .|+    
T Consensus        89 ~a~~~Gi~l~~~~~-~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y-vq~----  159 (284)
T TIGR00751        89 LGALSGLVLALLAA-PNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQY-LQA----  159 (284)
T ss_pred             HHHHHHHHHHHhcc-cchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHH-Hhc----
Confidence            34456677766644 4      454555588999999995  999999999 67777777777555555542 233    


Q ss_pred             CCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100           84 RPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  157 (214)
Q Consensus        84 ~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~  157 (214)
                        ..++...++......+.+..+...|++||+|+||+.|+||+|+++|+|++.++...++..+|...+......
T Consensus       160 --~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~  231 (284)
T TIGR00751       160 --HRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLAT  231 (284)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              123444555566677888999999999999999999999999999999999999999999998777655543

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02922 prenyltransferase

Probab=99.73  E-value=7.3e-16  Score=139.21  Aligned_cols=131  Identities=20%  Similarity=0.289  Sum_probs=100.9

Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC-CC---cCcHHHHHHHHH
Q 028100           23 QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGR-PV---VITRPLIFAAAI   98 (214)
Q Consensus        23 g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~-~~---~~~~~l~~~~~f   98 (214)
                      ++|+++....++.+.+++||.  ||+|+|++|+ |-..+....|.+...|.| ..|+..++. +.   .++...+.....
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l~v~g~y-~~~~~~~~~~~~~~~~~~~~~~l~slp  196 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPLATTAFY-LALASGAGGSEMAILPLTPTVLSASVL  196 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHHHHHHHH-HHhcccccccccccccccHHHHHHHHH
Confidence            457777766789999999995  9999999995 555555555644445544 223311111 01   234566778888


Q ss_pred             HHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028100           99 ISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  157 (214)
Q Consensus        99 ~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~  157 (214)
                      +.+.+..+...||+||+|.||+.|+||+|+++|+|++.++...++..+|+..+...+..
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  255 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK  255 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999888666554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.72  E-value=5.4e-16  Score=140.05  Aligned_cols=145  Identities=13%  Similarity=0.124  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcC--
Q 028100            7 ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGR--   84 (214)
Q Consensus         7 iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~--   84 (214)
                      ...++.++|++++...| ++.+....++.+++++||.  ||+++||+| +|...+....|.....|.+. .|+...+.  
T Consensus        97 ~~~ia~~~Gl~L~~~~g-~~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g~~y-v~t~~~~~~~  171 (317)
T PRK13387         97 MYVVAAILGVYLCMNTS-WLLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLLAVY-INTNTITIES  171 (317)
T ss_pred             HHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHHHHH-HhcCCCchHH
Confidence            34455556666887755 6666666689999999995  999999999 88887777777554444432 23211010  


Q ss_pred             -----C-CcC--c----HHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHH
Q 028100           85 -----P-VVI--T----RPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  152 (214)
Q Consensus        85 -----~-~~~--~----~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~  152 (214)
                           + .++  +    .++++......+....+...||+||+|+||+.|+||+|+++|+|++.++...+...+|+..+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~  251 (317)
T PRK13387        172 LLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAV  251 (317)
T ss_pred             HHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHH
Confidence                 0 000  0    012235666778888899999999999999999999999999999999999999999987765


Q ss_pred             HHHh
Q 028100          153 VGAS  156 (214)
Q Consensus       153 ~g~~  156 (214)
                      .-..
T Consensus       252 ~v~~  255 (317)
T PRK13387        252 IVLM  255 (317)
T ss_pred             HHHH
Confidence            5444

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.70  E-value=3.4e-15  Score=132.05  Aligned_cols=177  Identities=15%  Similarity=0.185  Sum_probs=120.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++++.++...+......+ ..+..+.+.|+      .+||+..+++++.....+.....|....  +  
T Consensus        83 ~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a~--~--  151 (282)
T TIGR01475        83 KEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAGWVAV--I--  151 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHHHHHH--h--
Confidence            46667777777777777776553333333 35666789998      4899999999876655554333333211  1  


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       |. .......+.......+++...++.||++|+||||+.|+||+|+++|+|++.+++.....+.+......+......+
T Consensus       152 -g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~  229 (282)
T TIGR01475       152 -GT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY  229 (282)
T ss_pred             -CC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence             22 1111223334445567888899999999999999999999999999999999988888777777776666543222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS  194 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~  194 (214)
                         .-..+..+.+..++++.+.+|.+|+++..+
T Consensus       230 ---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~  259 (282)
T TIGR01475       230 ---IALLALILIGLILAYEHYIVDPGDQSKIQR  259 (282)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence               122355555667788888999888876654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.68  E-value=4.8e-15  Score=132.40  Aligned_cols=181  Identities=20%  Similarity=0.132  Sum_probs=123.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++..+...+.++|+.+.+..+. .......++.++...|+      .+||+..++++.....    .+.+...+.. .+
T Consensus        92 ~~A~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~----~~~~~l~g~~-av  159 (289)
T PLN02809         92 FQGVGFLGAQLLLGLGILLQLNN-YSRILGASSLLLVFTYP------LMKRFTFWPQAFLGLT----FNWGALLGWA-AV  159 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHh------HHHhcCcchHHHHHHH----HHHHHHHHHH-HH
Confidence            57888899999999999988764 33333446777889998      4999999888753332    2233322211 12


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                      -|.. .. .+.........+++.+-.+.++.+|+|+||+.|++|+|+++|+|+..+++. ....++......|...  ..
T Consensus       160 ~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~  234 (289)
T PLN02809        160 KGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GL  234 (289)
T ss_pred             hCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cC
Confidence            1321 11 222223333445677778999999999999999999999999998888875 5555666666666543  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH-HHHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIW  200 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~-fy~~iw  200 (214)
                      +.... .+|++.+..+++|.+.+|++|+++..+ |.+..|
T Consensus       235 ~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~~  273 (289)
T PLN02809        235 GWPYY-AGLAAAAGHLAWQIQTVDLSSRADCNRKFVSNKW  273 (289)
T ss_pred             cHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence            33333 489999999999999999999887644 444333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.67  E-value=8.5e-15  Score=129.34  Aligned_cols=132  Identities=15%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++|+.++...+ +.......++.+++++||.     ++||++.++|.++....|.....|....     
T Consensus        82 ~~a~~~~~~l~~~~~~l~~~l~-~~~~~l~~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~-----  150 (279)
T PRK09573         82 KEAKIFSITLFIVGLILSIFIN-IYAFLIALLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV-----  150 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH-----
Confidence            5788888899999999888766 4434334467778999995     7999999999998888775544443221     


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  149 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~  149 (214)
                       +.   ...+. +......+++.++++.||+||+|+||+.|+||+|+++|+|++.+++.....+....
T Consensus       151 -~~---~~~~~-~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~  213 (279)
T PRK09573        151 -FN---VLRII-ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVL  213 (279)
T ss_pred             -cc---chHHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHH
Confidence             21   11222 33334456778899999999999999999999999999999999886555544333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.65  E-value=5.9e-15  Score=131.50  Aligned_cols=130  Identities=23%  Similarity=0.369  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCcCcH
Q 028100           11 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR   90 (214)
Q Consensus        11 ~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~~~~   90 (214)
                      +..+++.+....+ +......+...+++++||.  ||+|+|++|+.+..+ .... .+...+-|. .++   +   ..++
T Consensus       100 ~~~l~l~l~~~~~-~~~~~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~-~g~~-~~~~~~~y~-~~t---g---~~~~  167 (282)
T PRK12875        100 SGALALAFLLVLP-PAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDSLS-NGLY-ILPGVAAYA-LVS---G---SLPP  167 (282)
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcC--CCccchhccHHHHHH-HHHH-HHHHHHHHH-HHc---C---CCcH
Confidence            4455555554422 3333334567899999995  999999999877643 1111 111111111 111   1   2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 028100           91 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  154 (214)
Q Consensus        91 ~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g  154 (214)
                      ..++..  ..+++.++.++||+||+|+||+.|+||+|+++|+|++.+++......+-...+.+|
T Consensus       168 ~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        168 LLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            443333  25788999999999999999999999999999999999888766555544444444

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=3.7e-14  Score=127.40  Aligned_cols=188  Identities=15%  Similarity=0.143  Sum_probs=118.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++..+.....+.++.++...+......+. ++.++...|+      .+||+..++++.+....+.....|.....+...
T Consensus        96 ~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~~  168 (300)
T PRK13106         96 SEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYP------YMKRYTAFANYHLASIQGLAVFSGAVAVLGLYA  168 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            467777766667777777766643433333 4556677898      489999999998777766544444432211100


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                      .......+.+.++......+++.+.+++||++|+|+||+.|+||+|+++| |++.+++..+....-......|......+
T Consensus       169 ~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~  247 (300)
T PRK13106        169 NSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP  247 (300)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence            00000111222233334567889999999999999999999999999999 88888877666665555555555432111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK  201 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~~iwk  201 (214)
                      .-.   .+=.+....+.+|.+.+|.+ ++.-+.|.+..|-
T Consensus       248 ~y~---~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~i  283 (300)
T PRK13106        248 IAI---AATILHGLIMAYAYYLASKK-GDFGRAFYYNIYS  283 (300)
T ss_pred             HHH---HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence            111   12224455566788888877 6666777776654

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.62  E-value=1.1e-13  Score=123.24  Aligned_cols=177  Identities=14%  Similarity=0.083  Sum_probs=116.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++++.....+...++.++...+..... ...++++....|+      ..||+..+++.......+.....|....     
T Consensus        86 ~~a~~~~~~~~~~~l~l~~~l~~~~~~-l~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~~l~g~~a~-----  153 (284)
T PRK12888         86 RTAWTGALVALAVFLGAAALLNPLCLA-LAPLAVAPLVVYP------YAKRFTNFPHAILGLAQAVGPVGAWIAV-----  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHH------HhhcccchhhHHHHHHHHHHHHHHHHHH-----
Confidence            466777777777777777665532232 2335566678998      5899988888765544443332332211     


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       ...  .+.+.++......+++.+.++.+|++|+|+||+.|+||+|+++|+|++.+++.....+.++.....|......+
T Consensus       154 -~g~--~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~  230 (284)
T PRK12888        154 -TGT--WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA  230 (284)
T ss_pred             -cCC--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence             112  23334455556678899999999999999999999999999999999998776665555555555555532221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHH-HHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY  196 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~-~fy  196 (214)
                      .-.+   +=.+.+..+.+|.+.+|.+|++... .|+
T Consensus       231 ~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        231 LWWI---GLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHH---HHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            1111   2235566677899999999877664 654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.62  E-value=5.9e-14  Score=124.42  Aligned_cols=173  Identities=14%  Similarity=0.126  Sum_probs=115.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++..+...+.++|+.+++..+ +..+....++.++.+.|+      -.||+..++........+.....|....     
T Consensus        92 ~~a~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~l~~~~a~-----  159 (285)
T PRK12847         92 KQALILLFILLLIALVILLLLN-KTTIYLSFIAVILIVLYP------LMKRFFYWPQLFLGFTFNMGILMAFAAV-----  159 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcc------ccccCCcccHHHHHHHHHHHHHHHHHHH-----
Confidence            5778888889999998888765 444444557778899998      3888887777654333332222222111     


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-hHh
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS-SFQ  160 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~-~~~  160 (214)
                       +.  ..+.+.++......+++.+.++.+|++|+|+||+.|++|+|+++|+|++.+++.......++..+. +... ...
T Consensus       160 -~g--~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  235 (285)
T PRK12847        160 -QN--QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSLHN  235 (285)
T ss_pred             -cC--CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcCcH
Confidence             22  233444455556678899999999999999999999999999999999999887776666555442 3222 111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 028100          161 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS  194 (214)
Q Consensus       161 ~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~  194 (214)
                      +.    -.++++....++++.+.+|.+|+++..+
T Consensus       236 ~~----y~~~~~~~~~l~~~~~~~~~~~~~~~~~  265 (285)
T PRK12847        236 IF----YLAILAAAGIFYYQYKLLDFDNPANCMY  265 (285)
T ss_pred             HH----HHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            11    1233344456777888898887654433

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.61  E-value=1.3e-13  Score=123.15  Aligned_cols=178  Identities=17%  Similarity=0.103  Sum_probs=118.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++++.....+.++++.++..++......+ ..+..+...|+      .+||+..+.++.+..+.+.....|...     +
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A-----v  151 (286)
T PRK12895         84 REAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA-----V  151 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HHHhCccccHHHHHHHHHhHHHHHHHH-----H
Confidence            57888888999999888887664333322 34555556666      799999999886655555322222211     1


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       +.+..++...++......+++.+.++++|.+|+|+||+.|+||+|+++|+|+..+++......+-......|....   
T Consensus       152 -~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---  227 (286)
T PRK12895        152 -IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---  227 (286)
T ss_pred             -cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence             2222222222334445567899999999999999999999999999999999987775555444444444554432   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhH-HHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFY  196 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~-~~fy  196 (214)
                       ...--.|=.+.+..+.+|.+.+|.+|.++. .+|+
T Consensus       228 -~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        228 -TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence             122234555666778889999999988877 5533

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.60  E-value=1.4e-13  Score=122.06  Aligned_cols=175  Identities=15%  Similarity=0.177  Sum_probs=110.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++|+.+++..+ +........+.++.+.|+      .+||+..+++.......+.....|.+.     +
T Consensus        87 ~~a~~~~~~~~~~~~~l~~~l~-~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~  154 (281)
T TIGR01474        87 RQAILFLLVQLLVALGVLLQLN-PLTILLGVASLALVATYP------FMKRITYWPQLVLGLAFGWGALMGWAA-----V  154 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhc------hhcccccccHHHHHHHHHHHHHHHHHH-----H
Confidence            5778888999999999988866 444444457788899998      499999888875444333333333221     1


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       ..  ..+.+.++......+++.+.++.+|++|+|+||+.|+||+|+++|+|+..+.+.......+.. ...+.....  
T Consensus       155 -~g--~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  228 (281)
T TIGR01474       155 -TG--DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL-ALAGLIAGL--  228 (281)
T ss_pred             -cC--CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH-HHHHHHhCC--
Confidence             11  223333334445567888999999999999999999999999999998765544433333332 233333211  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSF  195 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~f  195 (214)
                      +.... .+-.+.+..+.++...+|.+|+++..++
T Consensus       229 ~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (281)
T TIGR01474       229 GPVYY-LGLAAAALLLIRQIATLDIRDPENCLKL  261 (281)
T ss_pred             cHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            11111 2222345555566777777666654433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.60  E-value=1.7e-13  Score=120.77  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=89.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++..+...+.++|+.++...|. ..+.....+..++++||.     |+||++.++|..+....|.....|...     +
T Consensus        82 ~~a~~~~~~l~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~  150 (277)
T PRK12883         82 KAALYYSLLLFAVGLALAYLINI-EAFLFALGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-----V  150 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-----h
Confidence            46777788888899888887664 434334456778999995     899999889998877776443333321     1


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  142 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~l  142 (214)
                       +.   .+...+.. .+..++.+.+++.||++|+||||+.|+||+|+++|+|++.+++...
T Consensus       151 -~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        151 -GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             -cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence             21   11222221 2234556788999999999999999999999999999998876544

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.53  E-value=1.6e-12  Score=116.07  Aligned_cols=175  Identities=19%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.+.++.++...+...... ...+..+...|+      .+||+..+++.......+.....|.+ . +   
T Consensus        89 ~~A~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~Y~------~~Kr~t~~~~~~~g~~~~~~~l~g~~-a-~---  156 (291)
T PRK12886         89 GSAILFIVLSSLLMLFAAWFLNPLCLYL-SPPALFFLLLYS------YCKRFTALAHVVLGFCLALAPLGAWI-A-I---  156 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh------hhhccccccHHHHHHHHHHHHHHHHH-H-H---
Confidence            4566665556666666655555333333 334666789999      37999999987655554433222222 1 1   


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       ...  .+.+.++......++..+.++.++++|.|+||+.|+||+|+++|+|++.+++.......+......+......+
T Consensus       157 -~g~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (291)
T PRK12886        157 -RGT--IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP  233 (291)
T ss_pred             -cCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence             112  23333344444566788888999999999999999999999999999998876666666565555554432111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCC-chhHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYS  194 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~-~~~~~~  194 (214)
                      .-.+   +-.+....+.++.+.++.+| +++-.+
T Consensus       234 ~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~  264 (291)
T PRK12886        234 WFLA---GLAVTGILLLYEHWLLRGGDLTRLDAA  264 (291)
T ss_pred             HHHH---HHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence            1111   11123333335677777766 334434

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.51  E-value=5e-12  Score=113.75  Aligned_cols=186  Identities=17%  Similarity=0.191  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.+.++.++..++...... ..+++++...||      .+||+..+++.....+.+. -+++.+..    +
T Consensus        94 ~~A~~~~~~~~~~~~~l~~~ln~l~~~l-~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~-~~l~~~~A----v  161 (300)
T PRK12876         94 NFSMLLLTLCSFLFLSLCWLLNPLCFSL-AVLSTLLMIIYP------YTKRVTFLCHWILGLVYYL-AILMNFFA----I  161 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH------hHhcCCchhHHHHHHHHHH-HHHHHHHH----H
Confidence            5677777777777777777766333333 336677779999      6999999998743333332 22222211    1


Q ss_pred             hcCCCcCcH--HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028100           82 LGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  159 (214)
Q Consensus        82 ~~~~~~~~~--~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~  159 (214)
                      -+.+..+..  ..++.+.....+..+..++++.+|+|+||+.|+||+|+++|+|++.+++.....+.-...+..|.....
T Consensus       162 ~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l  241 (300)
T PRK12876        162 IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSN  241 (300)
T ss_pred             hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            122211100  112223334455667889999999999999999999999999998777765555554555555555322


Q ss_pred             hHH-HHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH-HHHH
Q 028100          160 QLV-KLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY-MFIW  200 (214)
Q Consensus       160 ~~~-~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy-~~iw  200 (214)
                      .+. -.....+.+ ......+|.+.+|-++++.-.+|+ +..|
T Consensus       242 ~~~~y~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~F~~N~~  283 (300)
T PRK12876        242 KKIFYLCSLVPLT-VILKTIKHYSLIDKKKSTLEQKFFLGNIY  283 (300)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHhcCH
Confidence            221 111221222 222234555767665555444444 3344

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.50  E-value=4.5e-12  Score=113.31  Aligned_cols=176  Identities=18%  Similarity=0.166  Sum_probs=112.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++++.++..++....... +..+.....|+      .+||+..++++......+.....|...     +
T Consensus        94 ~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~------~~KR~t~~~~~~~g~~~~~~~l~G~~a-----v  161 (291)
T PRK12874         94 KSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYS------YFKRFSSLAHLVLGLSLGLAPIAGVVA-----V  161 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh------hhcccccccHHHHHHHHHHHHHHHHHH-----H
Confidence            46777777777888888877665444444 45666788999      389999999887666555443344322     1


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       ++.  .+.+.++......+++.+.++.++++|+|+||+.|++|+|+++|+|++.++...............|...... 
T Consensus       162 -~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (291)
T PRK12874        162 -LGE--IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG-  237 (291)
T ss_pred             -cCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch-
Confidence             222  2222334444557899999999999999999999999999999999988775443333333333333222111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSF  195 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~f  195 (214)
                        .....+-.+-+..++++.+.++.+++++-+.|
T Consensus       238 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f  269 (291)
T PRK12874        238 --LFAYLGVIVSALILLYEHYLVRKDFKKIDKAF  269 (291)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence              11223444445566777777776555544443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.50  E-value=1.6e-12  Score=116.07  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=113.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++........++|+.++..++......+ ..+.++...|+      -.||+..++++......+..+..|...     +
T Consensus        93 ~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l~g~~a-----~  160 (290)
T PRK12870         93 KVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYP------LAKRVFPVPQLVLAIAWGFAVLISWSA-----V  160 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhh------hhhhccccceeeehHHHHhHHHHHHHH-----H
Confidence            57788888889999988888764333333 35666788998      278887777765555545433333221     1


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       ...  .+.+.++......+++.+.++.++++|+|+|++.|++|+|+++|+|+..+++.....+. ......|...... 
T Consensus       161 -~g~--~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~-~~l~~~~~~~~~~-  235 (290)
T PRK12870        161 -TGH--LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTV-GFLAILGVLLELH-  235 (290)
T ss_pred             -cCC--CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHH-HHHHHHHHHhCCc-
Confidence             111  23334455556678899999999999999999999999999999999988776333222 2222334432111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--cCCCchh-HHHHHHHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTV--DLSNNAS-TYSFYMFIWK  201 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~v--d~~~~~~-~~~fy~~iwk  201 (214)
                       .... .+-......+.++.+++  |.+|+++ -+-|.+..|-
T Consensus       236 -~~y~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~  276 (290)
T PRK12870        236 -LPFW-IGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI  276 (290)
T ss_pred             -HHHH-HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence             1111 12223344556677778  7777754 4556555554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.47  E-value=6.1e-12  Score=111.61  Aligned_cols=180  Identities=16%  Similarity=0.139  Sum_probs=111.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++|+.++...+ +......+.+.++.+.|+      ..||+..++++......+..+..|....     
T Consensus        89 ~~a~~~~~~l~~~~~~l~~~l~-~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~g~~~~~g~~a~-----  156 (282)
T PRK12848         89 KEALALFVVLVLVAFLLVLTLN-TLTIWLSVAALALAWIYP------FMKRYTHLPQVVLGAAFGWGIPMAFAAV-----  156 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH------hHHhcCcccHHHHHHHHHHHHHHHHHHH-----
Confidence            5677888888888888887765 333333346777789996      3788887887755555554333333221     


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       +.  ..+.+.++......++........+++|+|+||+.|++|+|+++|+|++.+++....... ......+.....  
T Consensus       157 -~~--~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~--  230 (282)
T PRK12848        157 -QG--SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATL-ALLAWAGWLLGL--  230 (282)
T ss_pred             -hC--CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHH-HHHHHHHHHhcC--
Confidence             22  223333344344556677777888999999999999999999999999887764333332 222233333211  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhH-HHHHHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIW  200 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~-~~fy~~iw  200 (214)
                      +... ..+-.+....+.++.+.+|.+|+++. ..|++..|
T Consensus       231 ~~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~  269 (282)
T PRK12848        231 GWAY-YWGLLVAAALFVYQQKLIRDREREACFKAFLNNNW  269 (282)
T ss_pred             cHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence            1111 12223455556677889998877654 55555444

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.47  E-value=8.5e-12  Score=112.69  Aligned_cols=177  Identities=13%  Similarity=0.109  Sum_probs=107.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      +++......+.++|+.+....| ++.....+++.++.+.|+      -.||+..++......+.+.....|++.  ++  
T Consensus       119 ~~a~~~~~~~~~~g~~l~~~~~-~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~~Gl~~~~~~l~g~~a--~~--  187 (314)
T PRK12878        119 KQAKVFMVLQALVGLAVLLQFN-WFAIALGIASLAIVAAYP------FMKRITWWPQFFLGLAFSWGALMGWAA--HF--  187 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHHHHHH--Hh--
Confidence            4677778888888988888754 544444457788899997      388866555443222222222223222  11  


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~~~  161 (214)
                       | .  ++...+.......++..+.+..++++|+|+||+.|+||+|+++|+|++.+++.......... ...+......+
T Consensus       188 -g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~  262 (314)
T PRK12878        188 -G-S--LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM-GLAFWLAGVPL  262 (314)
T ss_pred             -C-C--CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH-HHHHHHhcCcH
Confidence             2 2  22233333334566788888999999999999999999999999999988875544444332 22332221122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  197 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~~~fy~  197 (214)
                      .-.+....   +...+.+|.+++|.+++++-.++++
T Consensus       263 ~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        263 LALLGLLA---AAAHLAWQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHHHHH---HHHHHHHHHHHcccCChHHHHHHHH
Confidence            22222222   2233667888888887776444443

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.37  E-value=8e-11  Score=105.65  Aligned_cols=167  Identities=13%  Similarity=0.114  Sum_probs=99.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchh---HHHHHHHHHHHHHHHHcCCCCccccccc----h---hhHHHHHHHHhhhhhhH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSP---PLIFGLIVWFLLGTAYSVDLPFLRWKTK----P---FLAGMCMVTVFGLVYQF   71 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~---~l~~~~~~~~~lg~~YS~~lPPlRlKr~----p---ll~~l~I~~v~~~iv~~   71 (214)
                      +++..+...+.++|+.++.....+   ..+...+.+.++++.|+       +||+    |   +.|+...    +. .+.
T Consensus        97 ~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~-------~~kr~~~~p~~~l~G~~~~----~~-~~~  164 (297)
T PRK12871         97 KNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQ-------VKKRNQKYPVAQLLGRTDF----TL-FPA  164 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccccccHHHHHHHHHH----HH-HHH
Confidence            456667777777777776654432   23333346778888998       4554    5   3454432    11 121


Q ss_pred             HHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHH
Q 028100           72 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  151 (214)
Q Consensus        72 g~f~~~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i  151 (214)
                      ..+.  ++   |   ..+...+....+..+++...++.||++|+|||++.|+||+|+++|+|++.+.......+.....+
T Consensus       165 ~g~~--~~---g---~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~  236 (297)
T PRK12871        165 AGYL--CY---G---QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI  236 (297)
T ss_pred             HHHH--Hh---C---CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH
Confidence            1122  11   2   22344455556667789999999999999999999999999999999998665544444433332


Q ss_pred             HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCchhH
Q 028100          152 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST  192 (214)
Q Consensus       152 ~~g~~~~~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~  192 (214)
                        +...  ..........=.+.+..+.+|.+..+-+||++.
T Consensus       237 --~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (297)
T PRK12871        237 --FFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKSQDAG  273 (297)
T ss_pred             --HHHH--HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence              2222  112111111113344456677777777777654

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.35  E-value=2.3e-10  Score=101.44  Aligned_cols=129  Identities=12%  Similarity=0.193  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY   80 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~-~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~   80 (214)
                      +++..+...+.++|+.++.. .+..+.....+........||.     ++||++. .|..+....|...+++-+.. +  
T Consensus        83 ~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~-~~~~v~~~~g~~~~l~g~~a-~--  153 (279)
T PRK12869         83 KEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTW-LNIVIGGFAGNAAALAGYAS-G--  153 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCCh-HHHHHHHHHHHHHHHHHHHH-H--
Confidence            56777888888888888876 5533333333455567889995     7999997 46666666554444433322 1  


Q ss_pred             HhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHH
Q 028100           81 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL  143 (214)
Q Consensus        81 ~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll  143 (214)
                        .+.  .+...++......++..+.....+..|.|.||+.|+||+|++.|+|++.+.+....
T Consensus       154 --~g~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~  212 (279)
T PRK12869        154 --TGS--LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISN  212 (279)
T ss_pred             --hCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHH
Confidence              111  23333444445555666665556778999999999999999999999987765443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.34  E-value=5.2e-11  Score=106.98  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCc
Q 028100            8 TLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVV   87 (214)
Q Consensus         8 v~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~~~~~   87 (214)
                      ...+.++++...... +|..+....+|.+.|+.|+  -+|.++.+.| +|-+.+....|.+...|.| +.|+      ..
T Consensus       105 ~~g~~llg~~~~~~s-~~~~l~lG~l~~~~g~~YT--gGp~PlgY~g-LGEi~~~vffG~l~v~g~~-yiqt------~~  173 (303)
T COG1575         105 LAGLALLGVILAALS-DWLVLLLGLLCIAAGILYT--GGPFPLGYMG-LGEIFVGVFFGPLIVLGAY-YIQT------GR  173 (303)
T ss_pred             HHHHHHHHHHHHHHh-hhHHHHHHHHHHHheeeec--cCCcCcccCC-HHHHHHHHHHHHHHHHHHH-HHhc------cc
Confidence            334445555555553 3554555568999999999  5999999999 4544444445544333333 2232      23


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 028100           88 ITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  156 (214)
Q Consensus        88 ~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~  156 (214)
                      ++...........+.+..+...|++.|+|-|++.|++|+|+|+|+|++..+-..++..+|+..++.-+.
T Consensus       174 ~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~  242 (303)
T COG1575         174 LSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVIL  242 (303)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777788888999999999999999999999999999999999999999999998877754333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.33  E-value=4.6e-11  Score=107.22  Aligned_cols=131  Identities=14%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-----cCCCCccccccchhhHHHHHHHHhhhhhhHH--HH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS--FF   74 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~Y-----S~~lPPlRlKr~pll~~l~I~~v~~~iv~~g--~f   74 (214)
                      ++++.......++++.++...      ...+...+..+.|     +.     ++||.++.+|+.++.+.+..+..|  ++
T Consensus        91 ~~A~~~si~L~~~~l~L~~l~------~i~i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~  159 (299)
T PRK13592         91 KDLAIALSFIVAVSVLLNVLF------MNNVGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLY  159 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhh
Confidence            345555555655565555442      1122455567888     87     899999999999999888544333  22


Q ss_pred             HH-HHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHH
Q 028100           75 IH-FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  146 (214)
Q Consensus        75 ~~-~~~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~  146 (214)
                      .. .+....|.|.. ....+.+.....+.+.++|+.||+|| ||||+. .+|+|+++|+|++.+++..+..+.
T Consensus       160 ~~~fg~~~~g~~~~-~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~  229 (299)
T PRK13592        160 TISFVCYKYNLPLL-SLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLD  229 (299)
T ss_pred             hhhhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHH
Confidence            11 11112233321 11112334455677899999999999 899965 999999999999999988776555

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.24  E-value=2.1e-09  Score=95.02  Aligned_cols=184  Identities=15%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             chHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH-HHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLL-GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK   79 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~-~g~~~l~~~~~~~~~l-g~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~   79 (214)
                      +++......+.++|+.+... .+ +.......++.++ .++||.     .+||++.. +..+....+...+++-+.. + 
T Consensus        82 ~~a~~~~~~~~~~g~~il~~~~~-~~~~~l~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~~a-~-  152 (280)
T TIGR01473        82 REALAFGLLLGVLGVAILAAFVN-PLAALLGLFGIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGWAA-V-  152 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHHHH-h-
Confidence            56777888888888874443 44 4433333345544 889995     58999866 5555555553333333211 1 


Q ss_pred             HHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028100           80 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  159 (214)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~  159 (214)
                         +..  .+.+.++......++...-...-..+|.|.||+.|+||+|+++|+|++.+++.......-....+.+.....
T Consensus       153 ---~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~  227 (280)
T TIGR01473       153 ---TGS--ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGT  227 (280)
T ss_pred             ---cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               111  223333333333333333322335689999999999999999999998876654443332333322322111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccCC-Cc-hhHHHHHHHHHH
Q 028100          160 QLVKLVSIIGHSTLAFLLWLRAQTVDLS-NN-ASTYSFYMFIWK  201 (214)
Q Consensus       160 ~~~~~~~~~~h~~l~~~l~~~~~~vd~~-~~-~~~~~fy~~iwk  201 (214)
                        +......+=..-+..++++.+.+|.+ |+ ++-+.|+.-.|-
T Consensus       228 --~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~  269 (280)
T TIGR01473       228 --GWLYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIY  269 (280)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence              11111111122333445556666554 33 234445444444

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.20  E-value=2.8e-09  Score=95.29  Aligned_cols=130  Identities=12%  Similarity=0.073  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhh-hhHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSL-QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV-YQFSFFIHFQK   79 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~-g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~i-v~~g~f~~~~~   79 (214)
                      +++........++|+.++... +.................||.     ++||++ .+|..+..+.+.. +..|.+.    
T Consensus        91 ~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~-~~~~~v~~~~g~~~~l~g~~a----  160 (296)
T PRK04375         91 REALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRT-PQNIVIGGAAGAMPPLIGWAA----  160 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCC-ccchHHHHHHHHhHHHHHHHH----
Confidence            567788888888888887553 322233222222335678984     799999 6777776665522 2223221    


Q ss_pred             HHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHH
Q 028100           80 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  145 (214)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~  145 (214)
                       + ..  .++...++......++.........+.|.|.||+.|+||+|+++|+|++.+++.....+
T Consensus       161 -~-~g--~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~  222 (296)
T PRK04375        161 -V-TG--SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVL  222 (296)
T ss_pred             -h-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHH
Confidence             1 22  23333444444555566555555556777778999999999999999988766444333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.20  E-value=2.1e-09  Score=96.64  Aligned_cols=184  Identities=13%  Similarity=0.057  Sum_probs=110.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQS---PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ   78 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~---~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~   78 (214)
                      +++.....++.++++.+....+.   +.......++++....|+      -+||+-.+..+......+.-...|+ ..  
T Consensus        91 ~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~------~~KR~t~~~~~vlg~~~a~~~l~gw-~A--  161 (294)
T PRK12873         91 KTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYP------SAKRWFAYPQAILALCWGFAVLIPW-AA--  161 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH------HHHhccccchHHHHHHHHhHHHHHH-HH--
Confidence            57888888888888888766531   222222335566788999      3888877666643333332222222 11  


Q ss_pred             HHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028100           79 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS  158 (214)
Q Consensus        79 ~~~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~  158 (214)
                        + .....+....+++.....+++.+-.++++++|.|+||+.|++|+|++.|++. ......+-.+........|....
T Consensus       162 --v-~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~-~~~~~~~~~~~~~ll~~~g~~~~  237 (294)
T PRK12873        162 --A-EGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNA-LKTVQICYFLTSIFLALAAFIAQ  237 (294)
T ss_pred             --H-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhh-HHHHHHHHHHHHHHHHHHHHHhC
Confidence              1 2222222233333345567888889999999999999999999999999754 44444333333333444555432


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhccCCC---chhHHHHHHHHHH
Q 028100          159 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSN---NASTYSFYMFIWK  201 (214)
Q Consensus       159 ~~~~~~~~~~~h~~l~~~l~~~~~~vd~~~---~~~~~~fy~~iwk  201 (214)
                      ..+  ... .+=.+.+..+.+|.+.+|.++   ++..+.|.+..|-
T Consensus       238 l~~--~y~-~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~  280 (294)
T PRK12873        238 VGF--IFW-PFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVIL  280 (294)
T ss_pred             CcH--HHH-HHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHH
Confidence            211  111 122344556678899999887   4566888887764

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.03  E-value=6.2e-08  Score=87.39  Aligned_cols=125  Identities=12%  Similarity=0.101  Sum_probs=83.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLI-FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY   80 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~-~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~   80 (214)
                      +++..+.....++|+.+....-++... ...+.......+|+.     ++||++..++.......+.....|...     
T Consensus        94 ~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a-----  163 (306)
T PRK13362         94 GEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA-----  163 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH-----
Confidence            467778888888888765442223322 222223345679995     799999988886555544333333322     


Q ss_pred             HhcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHH
Q 028100           81 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC  139 (214)
Q Consensus        81 ~~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~  139 (214)
                      + ++.  .+...+++...+.++...-...+++.|.|.|++.|++|+|++.|+|++.+..
T Consensus       164 ~-~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~  219 (306)
T PRK13362        164 V-TGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI  219 (306)
T ss_pred             H-cCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence            1 222  2334445555667777777788899999999999999999999999888744

>PLN02776 prenyltransferase

Probab=97.74  E-value=0.01  Score=54.75  Aligned_cols=124  Identities=15%  Similarity=0.089  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHH-HHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLL-GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK   79 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la-~~~g~~~l~~~~~~~~~l-g~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~   79 (214)
                      +++....+++.++|+.+. ...+......+ .++.++ ...|+      .+||+..+ |..+-.+.|.+-+++-|..   
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~-~~~~~ly~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~A---  144 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLG-AGNILLYAFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAA---  144 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHH---
Confidence            467777788888888554 34442222222 233444 45788      49999966 4444444443333333322   


Q ss_pred             HHhcCCCcCcHHHHHHHHHHHHHHH--HHHHHhcCCChhhhHhcCCccchhhh--chHHHHHHHHHH
Q 028100           80 YVLGRPVVITRPLIFAAAIISTISA--VMSLLKDIPDEDGDKQFGFQSISSKL--GKENVLRLCVYA  142 (214)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~f~~~fa~--~i~i~KDipDieGDr~~GirTl~v~l--G~k~~~~l~~~l  142 (214)
                       + +..  ++...+++...+.++..  .-.+.  ..|.|-|++.|++.+|+.-  |++.+..+....
T Consensus       145 -v-tg~--~~~~~~~Lf~~~~~Wq~pHf~~la--~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~  205 (341)
T PLN02776        145 -A-SGQ--LDAGAMVLAAALYFWQMPHFMALA--YMCRDDYAAGGYRMLSLADATGRRTALVALRNC  205 (341)
T ss_pred             -H-cCC--CCHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHhCCCcccCccccchHHHHHHHHHHH
Confidence             1 222  22333333333344433  22221  2234468899999999865  456555555333

>PRK08238 hypothetical protein; Validated

Probab=97.09  E-value=0.012  Score=56.41  Aligned_cols=105  Identities=25%  Similarity=0.324  Sum_probs=75.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV   81 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~   81 (214)
                      ++|..+...+.++|+.+++..+ +......+..+++..+||.     ++||++++++++++...+.-+..|..      .
T Consensus       273 ~~A~~~~~~l~~~~~~l~~~l~-~~~~~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~------a  340 (479)
T PRK08238        273 PFGLAAAPLLLLAGLALALALG-PAFLLVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAA------A  340 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHH------H
Confidence            5678888899999999998865 4555555577888899995     89999999999877665533333321      2


Q ss_pred             hcCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 028100           82 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF  123 (214)
Q Consensus        82 ~~~~~~~~~~l~~~~~f~~~fa~~i~i~KDipDieGDr~~Gi  123 (214)
                      .+    .+.+-|+.. +..++....++.|.-.|+++|++.|-
T Consensus       341 ~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        341 IG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             hc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            12    223444432 33456778899999999999999886

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=97.04  E-value=0.0054  Score=55.35  Aligned_cols=59  Identities=32%  Similarity=0.559  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhh
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG   66 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~   66 (214)
                      ++|......+..+|+.+++..+ +.........+++.++||.     ++||+|++++++++...+
T Consensus        93 ~~A~~~~~~l~~~~l~la~~l~-~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~  151 (295)
T PRK12324         93 SLAYILAVVLLVASLALAYLLS-PKLALVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFV  151 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHH
Confidence            5677888888888988888765 4444444577888899995     899999999998876654

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=93.95  E-value=0.079  Score=46.94  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             HHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028100          105 VMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF  159 (214)
Q Consensus       105 ~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~~ll~~~y~~~i~~g~~~~~  159 (214)
                      +|.=.|+-+|.|.||+.||-|+++..|+.....+...++...|....+.|.-.+.
T Consensus       244 ailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si  298 (359)
T KOG4581|consen  244 AILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSI  298 (359)
T ss_pred             HHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445789999999999999999999999999999999999999999888876543

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=90.73  E-value=5.8  Score=36.23  Aligned_cols=120  Identities=16%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhH-HHHHHHHH
Q 028100            2 GTGLAITLTLSLTSLAIALSLQSPPLIF-GLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF-SFFIHFQK   79 (214)
Q Consensus         2 ~~~~~iv~~~~~lg~~la~~~g~~~l~~-~~~~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~-g~f~~~~~   79 (214)
                      +++.......+++|+.+.+....+...+ .+...++=...||.     -+||+-.. |..|-...|...++ |+...   
T Consensus        99 ~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~-NiviGg~aGa~PpliGwaAv---  169 (304)
T COG0109          99 REALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQ-NIVIGGFAGAMPPLIGWAAV---  169 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCccc-ceeeeeccccccccceeeee---
Confidence            5677778888888888874433333333 33344455678996     79998743 33333333333332 22111   


Q ss_pred             HHhcCCCcCcHHHHHHHHHH----HHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHH
Q 028100           80 YVLGRPVVITRPLIFAAAII----STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC  139 (214)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~f~----~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~  139 (214)
                         .+.......+.+...|.    =+++.++..-+|      =|+.|+--+|+.-|++++.+-.
T Consensus       170 ---tg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t~~~I  224 (304)
T COG0109         170 ---TGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRTKRQI  224 (304)
T ss_pred             ---eCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHHHHHH
Confidence               11122222222222111    123333333332      3689999999999999887644

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=88.75  E-value=3.8  Score=37.31  Aligned_cols=178  Identities=16%  Similarity=0.137  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCCCccccccchhhHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 028100            5 LAITLTLSLTSLAIALSLQSPPLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLG   83 (214)
Q Consensus         5 ~~iv~~~~~lg~~la~~~g~~~l~~~~~-~~~~lg~~YS~~lPPlRlKr~pll~~l~I~~v~~~iv~~g~f~~~~~~~~~   83 (214)
                      +.|+...+-+...++...+-.+--+.+. -++.+-..|..      .||.-.+--..    -|.-.|+|...  +..+.+
T Consensus       151 qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl------~kr~TY~pq~v----LgltfnwGAll--Gw~A~~  218 (353)
T KOG1381|consen  151 QAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPL------MKRFTYWPQLV----LGLTFNWGALL--GWCALK  218 (353)
T ss_pred             HHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeeh------hhhcchhHHHH----Hhhhcchhhhh--cchhhc
Confidence            3455555556666666655444444333 45555556663      77776555442    12233343321  111112


Q ss_pred             CCCcCcHHHHHHHHHH-HHHHHHHHHHhcCCChhhhHhcCCccchhhhchHHHHHHHH-HHHHHHHHHHHHHHHhhhHhH
Q 028100           84 RPVVITRPLIFAAAII-STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV-YALFFAYGVSVIVGASSSFQL  161 (214)
Q Consensus        84 ~~~~~~~~l~~~~~f~-~~fa~~i~i~KDipDieGDr~~GirTl~v~lG~k~~~~l~~-~ll~~~y~~~i~~g~~~~~~~  161 (214)
                      ...  .++..+..-.- -.++..--.+-.=.|-+-|-+.|+++.+.|+|++.=.|++. ....++.+.  ..|..+-..|
T Consensus       219 g~~--~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La--~aG~~s~q~~  294 (353)
T KOG1381|consen  219 GSL--SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLA--AAGIASDQTW  294 (353)
T ss_pred             Ccc--ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHH--HhhhccCCCc
Confidence            221  12222211111 12333334556678999999999999999999998777763 222333222  3365554433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchhH-HHHHHHHHH
Q 028100          162 VKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWK  201 (214)
Q Consensus       162 ~~~~~~~~h~~l~~~l~~~~~~vd~~~~~~~-~~fy~~iwk  201 (214)
                       .-...  -...+.=|-++-.+||+.|++.. +.|=..+|-
T Consensus       295 -pyy~~--lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~nt  332 (353)
T KOG1381|consen  295 -PYYAA--LGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNT  332 (353)
T ss_pred             -hHHHH--HHHHHHHHHhheeeeecCChHHHHHHHHhcCcc
Confidence             11111  23344556788999999987755 344444443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00