Citrus Sinensis ID: 028108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MIFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHcccHHHHHccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTidtaldsddieeETEEKVDKVLSEIAGETAAQLPEAVRKersrvpaqrastSQQEQAIAEGVDDEEELEELRARLDKVRS
Flexible Loop (DISEMBL)
MIFYAKKIHTGLLLLLLCCVLDIQREEKNVqksikesakrndmgsaKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAgetaaqlpeavrkersrvpaqrastsqqeqaiaegvddeeeLEELRARLDKVRS
Low Complexity Region (SEG)
MIFYAKKIHTGllllllccvlDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVddeeeleelRARLDKVRS
Disordered region (IsUnstruct)
*IFYAKKIHTGLLLLLLCCVLDIQ****************************ILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFS**MTKAGIIEEMVND*********************************************************************************
Disordered Region (DISOPRED)
********************************************SAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE***************EVMKLVNNLMKAPEVAVTMQEFSK*MT**GIIEEMVNDTI**********EETEEKVDKVLSEIAGETAA***************************************LRARLDKVR*
Disordered Region (DISEMBL)
MIFYAKKIHTGLLLLLLCCVLDIQREE*******************KALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQL***********************************************
Disordered Region (DISPRO)
MIFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQ************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQxxxxxxxxxxxxxxxxxxxxxLDKVRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
Q9FFB3	229	Vacuolar protein sorting-	yes	no	0.910	0.847	0.798	1e-77
Q9LXH5	200	Putative vacuolar protein	no	no	0.901	0.96	0.718	2e-68
Q6NRM7	220	Charged multivesicular bo	N/A	no	0.708	0.686	0.476	1e-33
Q5BKM3	220	Charged multivesicular bo	yes	no	0.708	0.686	0.476	2e-33
Q58CS7	222	Charged multivesicular bo	yes	no	0.708	0.680	0.456	5e-29
Q5RAU5	222	Charged multivesicular bo	yes	no	0.708	0.680	0.463	6e-29
Q4R574	222	Charged multivesicular bo	N/A	no	0.708	0.680	0.456	7e-29
Q9Y3E7	222	Charged multivesicular bo	yes	no	0.708	0.680	0.463	7e-29
Q8CGS4	223	Charged multivesicular bo	yes	no	0.708	0.677	0.456	9e-29
Q9CQ10	224	Charged multivesicular bo	yes	no	0.708	0.674	0.456	9e-29

>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1

 Score =  289 bits (739), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 180/194 (92%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQ+EE+NVQK+IKE+AKRNDM SAKALAKEI+ SR+ VNRLYENKAQ+NSISMHLGE
Sbjct: 36  IRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAP++A TMQEFSKEMTKAG+IEE VN+ ID ALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+D+EEE +E+VDKVL+ IAGETAA+LP AVRKER +VPAQ+ASTS++E+A+AEGVDDEE
Sbjct: 156 SEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEE 215

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 216 ELEEIRARLAKVRS 229

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 163/192 (84%)

Query: 22  DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
           DI+REE+NV K+IK+S KRND+ +AKALA+EI+ SR+ V RLYENKAQ+NSISMHLGES+
Sbjct: 9   DIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESI 68

Query: 82  AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
           A A TVG+LSKS EVMKLVN+LMKAPE+AVTMQ FSKEMTK G+IEE V+D +D ALDS+
Sbjct: 69  ATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSE 128

Query: 142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEEL 201
           DIEEE EE+VDKVL+ IAGETAA+LPEAVRK++  VPAQ+A T   E AI EGVD EEEL
Sbjct: 129 DIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEEL 188

Query: 202 EELRARLDKVRS 213
           E +R RL  VRS
Sbjct: 189 EAIRYRLANVRS 200

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3 PE=2 SV=3

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 105/151 (69%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQRE++ V++SIKESAK+ +  +   LAKE++ S+KAVN+LY +KA +NS+ M +  
Sbjct: 34  IRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + NL+K PE+  TM+E SKEM KAGIIEEM+ DT +   D
Sbjct: 94  QLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMED 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            D++EE+ E ++D++L E+      + P  V
Sbjct: 154 QDEMEEQAEMEIDRILFEVTAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Xenopus laevis (taxid: 8355)

>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=chmp3 PE=2 SV=4

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 105/151 (69%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQRE++ V++SIKESAK+ +  +   LAKE++ S+KAVN+LY +KA +NS+ M +  
Sbjct: 34  IRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + NL+K PE+  TM++ SKEM KAGIIEEM+ DT +   D
Sbjct: 94  QLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMED 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            D++EE+ E ++D++L EI      + P  V
Sbjct: 154 QDEMEEQAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Xenopus tropicalis (taxid: 8364)

>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2 SV=4

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 103/151 (68%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +  
Sbjct: 34  IRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D
Sbjct: 94  QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            +++EE  E ++D++L EI      + P  V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Bos taurus (taxid: 9913)

>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2 SV=3

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 104/151 (68%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +  
Sbjct: 34  IRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D
Sbjct: 94  QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            +++EEE E ++D++L EI      + P  V
Sbjct: 154 QEEMEEEAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Pongo abelii (taxid: 9601)

>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis GN=CHMP3 PE=2 SV=3

 Score =  127 bits (318), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 103/151 (68%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +  
Sbjct: 34  IRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D
Sbjct: 94  QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDD 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            +++EE  E ++D++L EI      + P  V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Macaca fascicularis (taxid: 9541)

>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1 SV=3

 Score =  127 bits (318), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 104/151 (68%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +  
Sbjct: 34  IRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D
Sbjct: 94  QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            +++EEE E ++D++L EI      + P  V
Sbjct: 154 QEEMEEEAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor. Isoform 2 prevents stress-mediated cell death and accumulation of reactive oxygen species when expressed in yeast cells.

Homo sapiens (taxid: 9606)

>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3 PE=1 SV=3

 Score =  126 bits (317), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 103/151 (68%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +  
Sbjct: 34  IRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D
Sbjct: 94  QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            +++EE  E ++D++L EI      + P  V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1 SV=3

 Score =  126 bits (317), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 103/151 (68%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +  
Sbjct: 34  IRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 93

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
            +A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D
Sbjct: 94  QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDD 153

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAV 170
            +++EE  E ++D++L EI      + P  V
Sbjct: 154 QEEMEEAAEMEIDRILFEITAGALGKAPSKV 184

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Selectively binds to phosphatidylinositol 3,5-bisphosphate PtdIns(3,5)P2 and PtdIns(3,4)P2 in preference to other phosphoinositides tested. Involved in late stages of cytokinesis. Plays a role in endosomal sorting/trafficking of EGF receptor.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
358248916	227	uncharacterized protein LOC100797244 [Gl	0.901	0.845	0.814	4e-79
356516916	227	PREDICTED: vacuolar protein sorting-asso	0.901	0.845	0.809	7e-79
224097760	229	predicted protein [Populus trichocarpa]	0.910	0.847	0.860	2e-77
297808285	229	SNF7 family protein [Arabidopsis lyrata	0.910	0.847	0.804	6e-77
15237175	229	vacuolar protein sorting-associated prot	0.910	0.847	0.798	6e-76
24417394	225	unknown [Arabidopsis thaliana]	0.910	0.862	0.798	6e-76
297734917	259	unnamed protein product [Vitis vinifera]	0.906	0.745	0.809	8e-76
225436486	228	PREDICTED: vacuolar protein sorting-asso	0.906	0.846	0.809	1e-75
449510503	228	PREDICTED: vacuolar protein sorting-asso	0.906	0.846	0.793	1e-74
359806596	228	uncharacterized protein LOC100780989 [Gl	0.906	0.846	0.793	2e-74

>gi|358248916|ref|NP_001239962.1| uncharacterized protein LOC100797244 [Glycine max] gi|255641642|gb|ACU21093.1| unknown [Glycine max]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/194 (81%), Positives = 178/194 (91%), Gaps = 2/194 (1%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREEKNVQK+I+E+AKRNDMGSAKALAKE++ SRK VNRLYENKAQ+NSISMHLGE
Sbjct: 36  IRDIQREEKNVQKAIREAAKRNDMGSAKALAKELVRSRKTVNRLYENKAQMNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAPE+AVTMQEFSKEMTKAG+IEE+VND IDTALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVTMQEFSKEMTKAGVIEEIVNDAIDTALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIE+E EE+VDKVL+ IAGETAAQLPEAVRKER ++P Q  S   +E+ IAEGVDDEE
Sbjct: 156 SEDIEDEIEEEVDKVLTAIAGETAAQLPEAVRKERVKLPGQ--SVGAEEEVIAEGVDDEE 213

Query: 200 ELEELRARLDKVRS 213
           E+EE+RARL KVRS
Sbjct: 214 EMEEIRARLAKVRS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516916|ref|XP_003527138.1| PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Glycine max]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 179/194 (92%), Gaps = 2/194 (1%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREEKNVQK+I+E+AKRNDMGSAKALAKE++ SR+ VNRLYENKAQ+NSISMHLGE
Sbjct: 36  IRDIQREEKNVQKAIREAAKRNDMGSAKALAKELVRSRQTVNRLYENKAQMNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAPE+AVTMQEFSKEMTKAG+IEE+VND +D+ALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDSALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIE+E EE+VDKVL+ IAGETAAQLPEAVRKER ++PAQ  S   +E AIAEGVDDEE
Sbjct: 156 SEDIEDEIEEEVDKVLTAIAGETAAQLPEAVRKERVKLPAQ--SVGAEEDAIAEGVDDEE 213

Query: 200 ELEELRARLDKVRS 213
           E+EE+RARL KVRS
Sbjct: 214 EMEEIRARLAKVRS 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097760|ref|XP_002311070.1| predicted protein [Populus trichocarpa] gi|222850890|gb|EEE88437.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/194 (86%), Positives = 183/194 (94%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + D+QREEK+V K+IKE+AKRNDMGSAKALAKEI+MSRKAVNRLYENKAQLNSISMHLGE
Sbjct: 36  IRDVQREEKSVHKAIKEAAKRNDMGSAKALAKEIVMSRKAVNRLYENKAQLNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAPE+A TMQEFS+EMTKAG+IEEMV D +D+ALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPEMAATMQEFSREMTKAGVIEEMVTDAVDSALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIEEE EE+VDKVL+EIAGETAAQLPEAVRKER RVPAQ ASTS +E+AIAEGVDDEE
Sbjct: 156 SEDIEEEIEEEVDKVLTEIAGETAAQLPEAVRKERVRVPAQEASTSHEEEAIAEGVDDEE 215

Query: 200 ELEELRARLDKVRS 213
           ELEELRARL KVRS
Sbjct: 216 ELEELRARLAKVRS 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808285|ref|XP_002872026.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317863|gb|EFH48285.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 156/194 (80%), Positives = 181/194 (93%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQ+EE+NVQK+IKE+AKRNDM SAKALAKEI+ SR+ VNRLYENKAQ+NSISMHLGE
Sbjct: 36  IRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAP++A TMQEFSKEMTKAG+IEE VN+ ID ALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+D+E+E +E+VDKVL+ IAGETAA+LPEAVRKER +VPAQ+ASTS++E+AIAEGVDDEE
Sbjct: 156 SEDMEDEIDEEVDKVLTAIAGETAAELPEAVRKERIKVPAQKASTSREEEAIAEGVDDEE 215

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 216 ELEEIRARLAKVRS 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237175|ref|NP_197686.1| vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana] gi|75170194|sp|Q9FFB3.1|VP241_ARATH RecName: Full=Vacuolar protein sorting-associated protein 24 homolog 1; Short=AtVPS24-1; AltName: Full=Charged multivesicular body protein 3 homolog 1; AltName: Full=ESCRT-III complex subunit VPS24 homolog 1 gi|10177242|dbj|BAB10616.1| unnamed protein product [Arabidopsis thaliana] gi|15451068|gb|AAK96805.1| Unknown protein [Arabidopsis thaliana] gi|22136128|gb|AAM91142.1| unknown protein [Arabidopsis thaliana] gi|332005717|gb|AED93100.1| vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 180/194 (92%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQ+EE+NVQK+IKE+AKRNDM SAKALAKEI+ SR+ VNRLYENKAQ+NSISMHLGE
Sbjct: 36  IRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAP++A TMQEFSKEMTKAG+IEE VN+ ID ALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+D+EEE +E+VDKVL+ IAGETAA+LP AVRKER +VPAQ+ASTS++E+A+AEGVDDEE
Sbjct: 156 SEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEE 215

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 216 ELEEIRARLAKVRS 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24417394|gb|AAN60307.1| unknown [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 180/194 (92%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQ+EE+NVQK+IKE+AKRNDM SAKALAKEI+ SR+ VNRLYENKAQ+NSISMHLGE
Sbjct: 32  IRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGE 91

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAP++A TMQEFSKEMTKAG+IEE VN+ ID ALD
Sbjct: 92  SVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALD 151

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+D+EEE +E+VDKVL+ IAGETAA+LP AVRKER +VPAQ+ASTS++E+A+AEGVDDEE
Sbjct: 152 SEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEE 211

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 212 ELEEIRARLAKVRS 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734917|emb|CBI17151.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 174/194 (89%), Gaps = 1/194 (0%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREEK VQK+I+E+AKRNDM SAK LA EI+ SR+ VNRL+ENKAQLNSISMHLGE
Sbjct: 67  IRDIQREEKGVQKAIREAAKRNDMVSAKTLAMEIVRSRRTVNRLHENKAQLNSISMHLGE 126

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAPEVAVTMQEFSKEMTKAG+IEE+VND +DTALD
Sbjct: 127 SVAIARTVGHLSKSAEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGVIEEIVNDAVDTALD 186

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIEEE EE+VDKVL+ IAGETAAQLPEAVRKER + PAQ A  +  E+AIAEG DDEE
Sbjct: 187 SEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQPAQTAE-ADDEEAIAEGADDEE 245

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 246 ELEEIRARLAKVRS 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436486|ref|XP_002275903.1| PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 174/194 (89%), Gaps = 1/194 (0%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREEK VQK+I+E+AKRNDM SAK LA EI+ SR+ VNRL+ENKAQLNSISMHLGE
Sbjct: 36  IRDIQREEKGVQKAIREAAKRNDMVSAKTLAMEIVRSRRTVNRLHENKAQLNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAPEVAVTMQEFSKEMTKAG+IEE+VND +DTALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGVIEEIVNDAVDTALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIEEE EE+VDKVL+ IAGETAAQLPEAVRKER + PAQ A  +  E+AIAEG DDEE
Sbjct: 156 SEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERVKQPAQTAE-ADDEEAIAEGADDEE 214

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 215 ELEEIRARLAKVRS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510503|ref|XP_004163684.1| PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Cucumis sativus]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/194 (79%), Positives = 175/194 (90%), Gaps = 1/194 (0%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREEKNVQK+I+++AKRNDM SAKALAKEI+ S+K VNRL+ENKAQLNSISMHLGE
Sbjct: 36  IRDIQREEKNVQKAIRDAAKRNDMVSAKALAKEIVRSKKTVNRLHENKAQLNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNLMKAPE+A TMQEFSKEMTKAG+IEE VND +D+ALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLMKAPEMAKTMQEFSKEMTKAGVIEEFVNDAVDSALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIEEE EE+VDKVL+ IAGETAAQLPEAVRKE+ + PA      ++E+AIAEGVDDEE
Sbjct: 156 SEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKEKMKQPAH-VQEVREEEAIAEGVDDEE 214

Query: 200 ELEELRARLDKVRS 213
           ELEE+RARL KVRS
Sbjct: 215 ELEEIRARLAKVRS 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806596|ref|NP_001241270.1| uncharacterized protein LOC100780989 [Glycine max] gi|255638843|gb|ACU19725.1| unknown [Glycine max]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/194 (79%), Positives = 176/194 (90%), Gaps = 1/194 (0%)

Query: 20  VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGE 79
           + DIQREEKNVQK+I+E+AKRNDMGSAKALAKE++ SRK VNRLYENKAQ+NSISMHLGE
Sbjct: 36  IRDIQREEKNVQKAIREAAKRNDMGSAKALAKELVRSRKTVNRLYENKAQMNSISMHLGE 95

Query: 80  SVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALD 139
           SVAIARTVGHLSKS EVMKLVNNL+KAPE+AVTMQEFSKEMTKAG+IEE+VND +DTALD
Sbjct: 96  SVAIARTVGHLSKSAEVMKLVNNLIKAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDTALD 155

Query: 140 SDDIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEE 199
           S+DIE+E EE+VDKVL+ IAGETAAQLPEA RKER + PAQ    +++E   AEGVDDEE
Sbjct: 156 SEDIEDEIEEEVDKVLTAIAGETAAQLPEAARKERVKQPAQSVGAAEEEAI-AEGVDDEE 214

Query: 200 ELEELRARLDKVRS 213
           E+EE+RARL KVRS
Sbjct: 215 EMEEIRARLAKVRS 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2172686	229	VPS24.1 [Arabidopsis thaliana	0.901	0.838	0.765	1.1e-71
TAIR|locus:2075924	200	VPS24.2 [Arabidopsis thaliana	0.901	0.96	0.687	2.6e-63
UNIPROTKB|E1C230	218	VPS24 "Uncharacterized protein	0.816	0.798	0.436	3.6e-34
FB|FBgn0037231	223	vps24 "Charged multivesicular	0.784	0.748	0.447	1.5e-33
UNIPROTKB|E2RDX0	292	CHMP3 "Uncharacterized protein	0.816	0.595	0.429	2e-33
UNIPROTKB|F1SVC7	217	CHMP3 "Uncharacterized protein	0.816	0.801	0.429	2e-33
UNIPROTKB|I3LFQ9	221	CHMP3 "Uncharacterized protein	0.816	0.787	0.429	2e-33
UNIPROTKB|Q9Y3E7	222	CHMP3 "Charged multivesicular	0.788	0.756	0.429	2.5e-33
UNIPROTKB|Q58CS7	222	CHMP3 "Charged multivesicular	0.788	0.756	0.432	4.1e-33
MGI|MGI:1913950	224	Chmp3 "charged multivesicular	0.887	0.843	0.406	1.1e-32

TAIR|locus:2172686 VPS24.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 147/192 (76%), Positives = 170/192 (88%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQ+EE+NVQK+IKE+AKRNDM SAKALAKEI+ SR+ VNRLYENKAQ+NSISMHLGESV
Sbjct:    38 DIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESV 97

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             AIARTVGHLSKS EVMKLVNNLMKAP++A TMQEFSKEMTKAG+IEE VN+ ID ALDS+
Sbjct:    98 AIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSE 157

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVXXXXXX 201
             D+EEE +E+VDKVL+ IAGETAA+LP AVRKER +VPAQ+ASTS++E+A+AEGV      
Sbjct:   158 DMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEEL 217

Query:   202 XXXRARLDKVRS 213
                RARL KVRS
Sbjct:   218 EEIRARLAKVRS 229

GO:0005634 "nucleus" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2075924 VPS24.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 132/192 (68%), Positives = 156/192 (81%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DI+REE+NV K+IK+S KRND+ +AKALA+EI+ SR+ V RLYENKAQ+NSISMHLGES+
Sbjct:     9 DIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESI 68

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A A TVG+LSKS EVMKLVN+LMKAPE+AVTMQ FSKEMTK G+IEE V+D +D ALDS+
Sbjct:    69 ATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSE 128

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVXXXXXX 201
             DIEEE EE+VDKVL+ IAGETAA+LPEAVRK++  VPAQ+A T   E AI EGV      
Sbjct:   129 DIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEEL 188

Query:   202 XXXRARLDKVRS 213
                R RL  VRS
Sbjct:   189 EAIRYRLANVRS 200

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

UNIPROTKB|E1C230 VPS24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 76/174 (43%), Positives = 111/174 (63%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++SIK++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:    36 DIQREEEKVKRSIKDAAKKGQKDVCVILAKELIRSRKAVSKLYASKAHMNSVLMGMKNQL 95

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:    96 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMEDEE 155

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGV 195
             ++EEE E ++DK+L EI      + P  V        A  A+ +  E+   E +
Sbjct:   156 EMEEEAEMEIDKILFEITAGALGKAPSKVTDALPEPEAMGAAAAVDEEEDIEAM 209

GO:0015031 "protein transport" evidence=IEA

FB|FBgn0037231 vps24 "Charged multivesicular body protein 3" [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 76/170 (44%), Positives = 119/170 (70%)

Query:    23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
             IQREE+ V++S+K++A++ND  +   LAKEI+ +RKA+NR+Y +KA LNSI M +   ++
Sbjct:    37 IQREEEKVKRSLKQAAQKNDRDTCVILAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLS 96

Query:    83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
               R  G L KSTEV++ + +L++ PE+A  M++ SKEM KAGIIEEM+++T+D+  +S++
Sbjct:    97 TLRVAGSLQKSTEVLQAMQSLVRYPELAGIMRDMSKEMMKAGIIEEMLDETMDSLEESEE 156

Query:   143 IEEETEEKVDKVLSEIA-GETA-AQLP-EAVRKERSRVPAQRASTSQQEQ 189
             +EEE  ++VDKVL EI  G+   A LP EA   +++   A R    Q ++
Sbjct:   157 LEEEASKEVDKVLWEITDGKLGEAPLPPEATPADKASASAARVEAEQDDE 206

GO:0015031 "protein transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|E2RDX0 CHMP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/177 (42%), Positives = 112/177 (63%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:   107 DIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 166

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:   167 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 226

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRK---ERSRVPAQRASTSQQEQAIAEGV 195
             ++EE  E ++DK+L EI      + P  V     E     A  AS  ++E+   E +
Sbjct:   227 EMEEAAEMEIDKILFEITAGALGKAPSKVTDALPEPEPSGAMAASEDEEEEEALEAM 283

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1SVC7 CHMP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/177 (42%), Positives = 112/177 (63%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:    32 DIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 91

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:    92 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 151

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRK---ERSRVPAQRASTSQQEQAIAEGV 195
             ++EE  E ++DK+L EI      + P  V     E     A  AS  ++E+   E +
Sbjct:   152 EMEEAAEMEIDKILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEALEAM 208

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|I3LFQ9 CHMP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/177 (42%), Positives = 112/177 (63%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:    36 DIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 95

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:    96 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 155

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRK---ERSRVPAQRASTSQQEQAIAEGV 195
             ++EE  E ++DK+L EI      + P  V     E     A  AS  ++E+   E +
Sbjct:   156 EMEEAAEMEIDKILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEALEAM 212

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9Y3E7 CHMP3 "Charged multivesicular body protein 3" [Homo sapiens (taxid:9606)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 73/170 (42%), Positives = 110/170 (64%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:    36 DIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 95

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:    96 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 155

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKE--RSRVPAQRASTSQQEQ 189
             ++EEE E ++D++L EI      + P  V         P   A++  +E+
Sbjct:   156 EMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEE 205

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

UNIPROTKB|Q58CS7 CHMP3 "Charged multivesicular body protein 3" [Bos taurus (taxid:9913)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 74/171 (43%), Positives = 111/171 (64%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:    36 DIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 95

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:    96 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 155

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRK---ERSRVPAQRASTSQQEQ 189
             ++EE  E ++D++L EI      + P  V     E   + A  AS  ++E+
Sbjct:   156 EMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPLGAMAASEDEEEE 206

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1913950 Chmp3 "charged multivesicular body protein 3" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 78/192 (40%), Positives = 117/192 (60%)

Query:    22 DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
             DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct:    36 DIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 95

Query:    82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
             A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct:    96 AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 155

Query:   142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVXXXXXX 201
             ++EE  E ++D++L EI   TA  L +A  K    +P    + +       E        
Sbjct:   156 EMEEAAEMEIDRILFEI---TAGALGKAPSKVTDALPEPEPAGAMAASEEGEEEEDEEDL 212

Query:   202 XXXRARLDKVRS 213
                ++RL  +RS
Sbjct:   213 EAMQSRLATLRS 224

GO:0000910 "cytokinesis" evidence=ISO

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030496 "midbody" evidence=ISO

GO:0051036 "regulation of endosome size" evidence=ISO

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFB3	VP241_ARATH	No assigned EC number	0.7989	0.9107	0.8471	yes	no
Q9LXH5	VP242_ARATH	No assigned EC number	0.7187	0.9014	0.96	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VIII1654	hypothetical protein (229 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.2975.1	hypothetical protein (249 aa)					•	•	•		0.899
	grail3.0029023702	hypothetical protein (179 aa)						•	•		0.516
	estExt_fgenesh4_pm.C_LG_VIII0063	hypothetical protein (237 aa)					•	•	•		0.499
	estExt_fgenesh4_pm.C_LG_X0988	hypothetical protein (236 aa)					•	•	•		0.490
	eugene3.00050070	hypothetical protein (222 aa)					•	•	•		0.480
	fgenesh4_pm.C_LG_VII000158	hypothetical protein (222 aa)					•	•	•		0.476
	estExt_fgenesh4_pm.C_LG_X0978	hypothetical protein (447 aa)						•	•		0.453
	grail3.0145004603	hypothetical protein (207 aa)					•	•	•		0.408
	eugene3.00061076	hypothetical protein (253 aa)					•	•	•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
pfam03357	169	pfam03357, Snf7, Snf7	1e-23
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	7e-06

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 91.9 bits (229), Expect = 1e-23
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 23  IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVA 82
           ++++ K ++  IK+ AK+ +  +A  L K+     K +++L    A L  + M +  +  
Sbjct: 20  LEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKT 79

Query: 83  IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDD 142
               +  +    + MK +N  M   ++   M E   +M KA  I EM++DT+D A + D 
Sbjct: 80  NQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEED- 138

Query: 143 IEEETEEKVDKVLSEIAGETAAQLPEAV 170
            EEE + ++D +L EI  E   +LP A 
Sbjct: 139 -EEELDAELDALLDEIGDEELVELPSAP 165

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 5/188 (2%)

Query: 26  EEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR 85
           E K  Q  + E AK+      + LA+E+   RKA +RL  + ++L S+   L E V + +
Sbjct: 19  EAKKGQVLLNEIAKKAPNR--RRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQ 76

Query: 86  TVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEE 145
             G ++K+   M  + ++ +  ++  T    + E+ +  +        +       +  E
Sbjct: 77  VSGDMAKAAMYMNELESIRRIMQLFETQFL-ALELVQLRLETMDELMDVVVGDPVLEDLE 135

Query: 146 ETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELR 205
           E +E V+KVL EI  E   +  +++        +  A+ S + + I E  +   E + L+
Sbjct: 136 ELDELVNKVLPEIGLEL-DESEQSLPANVVENGSVPAAVSPEARKILEEAEKIAE-DRLQ 193

Query: 206 ARLDKVRS 213
            RL ++ +
Sbjct: 194 ERLRELPA 201

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	100.0
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	100.0
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	100.0
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.91
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.67
PTZ00464	211	SNF-7-like protein; Provisional	99.46
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.26
KOG1656	221	consensus Protein involved in glucose derepression	99.2
COG5491	204	VPS24 Conserved protein implicated in secretion [C	98.7
KOG2910	209	consensus Uncharacterized conserved protein predic	98.68
KOG2911	439	consensus Uncharacterized conserved protein [Funct	98.24
KOG1655	218	consensus Protein involved in vacuolar protein sor	98.08
PTZ00464	211	SNF-7-like protein; Provisional	97.49
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	97.02
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	96.97
PRK10698	222	phage shock protein PspA; Provisional	96.28
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	95.5
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	93.89
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	93.66
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	93.57
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	93.36
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.14
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	87.24
COG1937	89	Uncharacterized protein conserved in bacteria [Fun	83.96
KOG2910	209	consensus Uncharacterized conserved protein predic	82.47

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-53  Score=346.66  Aligned_cols=208  Identities=30%  Similarity=0.431  Sum_probs=179.5

Q ss_pred             chhhhhhhhHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            2 IFYAKKIHTGLLL-----------LLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQL   70 (213)
Q Consensus         2 ~~~~~~~~~~~~r-----------~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L   70 (213)
                      |||+|+.+.+.+|           .|+|+..+++-+||++..+||+.||+|+++++||+||+|||+|+|+.+|+.++++|
T Consensus         3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqi   82 (224)
T KOG3230|consen    3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQI   82 (224)
T ss_pred             cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7898887766654           67888888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHH
Q 028108           71 NSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEK  150 (213)
Q Consensus        71 ~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~  150 (213)
                      .+|++++||.++...++.+|+++|+.|..||+.||+|+++++|++|++|++.||+.+|||+|++|++++++++|||+|++
T Consensus        83 qaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~l  162 (224)
T KOG3230|consen   83 QAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDL  162 (224)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcchhhhcCchhhhhhccccccccc-cchhHHhhhhccCCChHhHHHHHHHHHhhh
Q 028108          151 VDKVLSEIAGETAAQLPEAVRKERSRVPAQRA-STSQQEQAIAEGVDDEEELEELRARLDKVR  212 (213)
Q Consensus       151 v~kVldE~g~~~~~~lp~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr  212 (213)
                      |+|||||||++++++|.++|.. ..+.|+... -.+++..+..+. ..+.+ |+|++||++||
T Consensus       163 vnqVLDEiGvdl~~qL~~~P~~-~~~~~~a~~ig~~~a~~~gs~~-~~~~d-ddLqaRL~~Lr  222 (224)
T KOG3230|consen  163 VNQVLDEIGVDLASQLSSLPSA-AGSLPIAKTIGGKKAEAAGSEF-HSDAD-DDLQARLDNLR  222 (224)
T ss_pred             HHHHHHHHcccHHHHhccCccc-ccccchhhccCCcccccccccc-CCCch-hHHHHHHHHHh
Confidence            9999999999999999998884 233332210 111011111111 12233 89999999998

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-47  Score=316.52  Aligned_cols=206  Identities=56%  Similarity=0.747  Sum_probs=185.5

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV   87 (213)
Q Consensus         8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~   87 (213)
                      .+|+.-|.|+|+++.|+++|++.+..||++||+||.++||+|||++|+.|+++.|+|..||||+||+++|..+.+|..++
T Consensus        22 kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~  101 (227)
T KOG3229|consen   22 KIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVA  101 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHH
Confidence            34556679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCc
Q 028108           88 GHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLP  167 (213)
Q Consensus        88 ~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp  167 (213)
                      |+|.+||.+|+.||++|.+|+|+.||++|++|++++||++||++|+|+++.|.++++|++|++|++||.+|..+..+++|
T Consensus       102 G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p  181 (227)
T KOG3229|consen  102 GSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAP  181 (227)
T ss_pred             hhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCC
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             hhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108          168 EAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS  213 (213)
Q Consensus       168 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~  213 (213)
                      .+|......+|.....+...+.+++++.++++++.+|+.||++|||
T Consensus       182 ~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  182 LAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             cchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            9888754455543222222334555565567789999999999997

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-41  Score=274.61  Aligned_cols=195  Identities=26%  Similarity=0.381  Sum_probs=172.1

Q ss_pred             chhhhhhhhHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            2 IFYAKKIHTGLLLL-----------LLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQL   70 (213)
Q Consensus         2 ~~~~~~~~~~~~r~-----------l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L   70 (213)
                      ||+|| .+.+++|+           |+|.-++++++|++|+.+||+.|+.||.++||+|||+||..|||..|-|.+++++
T Consensus         3 iF~Kk-tvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki   81 (208)
T KOG3231|consen    3 IFKKK-TVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKI   81 (208)
T ss_pred             cccCC-CHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            67665 66666655           4455556777999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHH
Q 028108           71 NSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEK  150 (213)
Q Consensus        71 ~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~  150 (213)
                      .+++.|-..+.++.+++++|+.+++.|+.||+.|+++++..+|++|++.+++|+|.+|||+|++|+.+|..+++||.+.+
T Consensus        82 ~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~ai  161 (208)
T KOG3231|consen   82 TSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAI  161 (208)
T ss_pred             hhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcchhhhcCchhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108          151 VDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS  213 (213)
Q Consensus       151 v~kVldE~g~~~~~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~  213 (213)
                      |+||||||||++++++.++|+..+  .|.  .+.         +   ....+|+.+.|++||+
T Consensus       162 VNqVLDEIGIEisgKma~~P~a~s--~~~--~st---------~---kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  162 VNQVLDEIGIEISGKMAKAPSARS--LPS--AST---------S---KATISDIERQLAALRS  208 (208)
T ss_pred             HHHHHHHhhhhhcchhccCCccCC--CCc--ccc---------C---CCcHHHHHHHHHHhcC
Confidence            999999999999999999997421  111  110         0   1234789999999996

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-40  Score=266.88  Aligned_cols=185  Identities=15%  Similarity=0.255  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108           13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSK   92 (213)
Q Consensus        13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~   92 (213)
                      .++|.|+.++|+++||..+.++|+|+++||++.|||||.+.||.+++.-+|+++.+++++|.+|+||+.+|.+++++|.+
T Consensus        18 sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~g   97 (203)
T KOG3232|consen   18 SKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAG   97 (203)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCchhhhh
Q 028108           93 STEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPEAVRK  172 (213)
Q Consensus        93 s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp~~p~~  172 (213)
                      +++.|....+.|||++|+.+|+.|++||+.+++..++|+++|++++....|++++|.++.+|+||+|++++..||+-..+
T Consensus        98 VvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~  177 (203)
T KOG3232|consen   98 VVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVP  177 (203)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999974221


Q ss_pred             hccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108          173 ERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS  213 (213)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~  213 (213)
                       .+.++              +.+..+++ |+|.+||++||+
T Consensus       178 -a~~~~--------------t~~~~~e~-d~L~qRLaaLR~  202 (203)
T KOG3232|consen  178 -AISVK--------------TSAVVDEE-DDLTQRLAALRA  202 (203)
T ss_pred             -CcCCC--------------Cccccchh-hHHHHHHHHHhc
Confidence             11111              11112344 899999999995

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.91  E-value=5e-24  Score=172.83  Aligned_cols=163  Identities=23%  Similarity=0.319  Sum_probs=132.9

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            8 IHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV   87 (213)
Q Consensus         8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~   87 (213)
                      -.+.+.+.|++++.+|+.+.+++..+||+++++|+...|++|++..++.+++..+++.+..+|++|..+++++..+..+.
T Consensus         5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~   84 (171)
T PF03357_consen    5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVV   84 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchh--hhc
Q 028108           88 GHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGET--AAQ  165 (213)
Q Consensus        88 ~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~--~~~  165 (213)
                      .+|+.++++|+.+|+.++++++..+|++|..+++.++.++++|++.++..  ++.++++.+++++++++|++.+.  ...
T Consensus        85 ~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~~~~~  162 (171)
T PF03357_consen   85 KALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEEEKQQ  162 (171)
T ss_dssp             SS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--SS-
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhhcccc
Confidence            99999999999999999999999999999999999999999999998754  23456788999999999999988  889


Q ss_pred             Cchhhhh
Q 028108          166 LPEAVRK  172 (213)
Q Consensus       166 lp~~p~~  172 (213)
                      ||++|++
T Consensus       163 lp~~P~~  169 (171)
T PF03357_consen  163 LPSVPST  169 (171)
T ss_dssp             SS---HH
T ss_pred             CCcCCCC
Confidence            9999986

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.67  E-value=2.6e-15  Score=126.57  Aligned_cols=189  Identities=22%  Similarity=0.231  Sum_probs=122.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108           16 LLCCVLDIQREEKNVQKSIKESAKRN--DMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKS   93 (213)
Q Consensus        16 l~R~i~~l~~eEkkl~~~IKkaakkg--~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s   93 (213)
                      ++|++.++-++.|...+....+.++-  +....++|++.+++.|++..|+...+++|+++...+.....|..+.+-    
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~----   80 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGD----   80 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            44555554444444443333333222  556688999999998888888887777777777766666666655555    


Q ss_pred             HHHHHHHHhhCC-hHHHHHHHHHHHHHHHHhhhHH---HHHhhhhhhccC--CCChhHHHHHHHHHHHHHHcchhhhcCc
Q 028108           94 TEVMKLVNNLMK-APEVAVTMQEFSKEMTKAGIIE---EMVNDTIDTALD--SDDIEEETEEKVDKVLSEIAGETAAQLP  167 (213)
Q Consensus        94 ~~~M~~~n~~m~-l~~l~~~M~~f~ke~~~~~~~~---emm~d~~d~~~~--~~~~eee~d~~v~kVldE~g~~~~~~lp  167 (213)
                         |..++..|| ++.|.++|+.|+.++.-++...   |+|.+.++..++  ..++.+++|++|++|++|+|+++.....
T Consensus        81 ---~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          81 ---MAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence               455566666 8899999999999998899998   788777776664  4457789999999999999999884444


Q ss_pred             hhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108          168 EAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS  213 (213)
Q Consensus       168 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~  213 (213)
                      ++|...-.+.+.++...|++..+..+.  +....+.|++||..|++
T Consensus       158 ~~~~~~~~~~~~~a~~~~ea~~ileea--~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVENGSVPAAVSPEARKILEEA--EKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhcccccccccChhhhhhHHHH--HhhHHHHHHHHHHhccc
Confidence            333310001111222222222222211  12234899999999874

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.46  E-value=1.1e-11  Score=105.58  Aligned_cols=169  Identities=12%  Similarity=0.122  Sum_probs=120.4

Q ss_pred             chhhhh-----hhhHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHcCC---hhhHHHHHHHHHHHHHHHH----HHHHH
Q 028108            2 IFYAKK-----IHTGLLLLLLCCVLDIQREEKNVQKS---IKESAKRND---MGSAKALAKEILMSRKAVN----RLYEN   66 (213)
Q Consensus         2 ~~~~~~-----~~~~~~r~l~R~i~~l~~eEkkl~~~---IKkaakkg~---~~~arilAkelvr~Rk~~~----~l~~~   66 (213)
                      |||+++     ..+..+..|......+++..+++..+   .|+.++++.   ....|.-|..++|.||...    +++..
T Consensus         4 lFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q   83 (211)
T PTZ00464          4 LFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQ   83 (211)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788765     44445555555555555555554443   233333221   1235888999999888544    57888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHH
Q 028108           67 KAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEE  146 (213)
Q Consensus        67 ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee  146 (213)
                      ..+|..+...+.++.....+..+|+.++++|+.+|+.|++.+|..+|.++.-+++..+=+++++...+...  ++.+|+|
T Consensus        84 ~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~DEdE  161 (211)
T PTZ00464         84 QFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDIDEDE  161 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCHHH
Confidence            88999999999999999999999999999999999999999999999999999999988888888755311  1234556


Q ss_pred             HHHHHHHHHHHHcc----hhhhcCchhhhh
Q 028108          147 TEEKVDKVLSEIAG----ETAAQLPEAVRK  172 (213)
Q Consensus       147 ~d~~v~kVldE~g~----~~~~~lp~~p~~  172 (213)
                      .+++++.+..|...    ...+..|++|+.
T Consensus       162 Le~ELe~Le~e~~~e~~~~~l~~~~~~p~~  191 (211)
T PTZ00464        162 MLGELDALDFDMEKEADASYLADALAVPGT  191 (211)
T ss_pred             HHHHHHHHHHHHhccccchhhhccccCCCC
Confidence            66666666666533    223456777775

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.26  E-value=1.4e-09  Score=91.25  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=107.2

Q ss_pred             Cchhhhhh--------------hhHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHcCChhhHHHHHHHHHHHHHH
Q 028108            1 MIFYAKKI--------------HTGLLLLLLCCVLDIQREEKNVQKSI-------KESAKRNDMGSAKALAKEILMSRKA   59 (213)
Q Consensus         1 ~~~~~~~~--------------~~~~~r~l~R~i~~l~~eEkkl~~~I-------Kkaakkg~~~~arilAkelvr~Rk~   59 (213)
                      ++|||+|.              +.+.|-.|-.++..|++.++.|..+|       |+.+++|+..    -|..+.|.||.
T Consensus         3 ~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~----~Al~~LkrKK~   78 (191)
T PTZ00446          3 FWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMS----NAKILLKRKKL   78 (191)
T ss_pred             cccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHH
Confidence            47888763              55677777777777777776666655       4455666643    36777777665


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108           60 V----NRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID  135 (213)
Q Consensus        60 ~----~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d  135 (213)
                      .    .+++....+|+.+...+..+.....+..+|+.++++|+.+|+.|++.++..+|.++.-+++..+=+++++...+.
T Consensus        79 ~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~  158 (191)
T PTZ00446         79 YEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL  158 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4    445555666666777788999999999999999999999999999999999999999999998888888875432


Q ss_pred             hccCCCChhHHHHHHHHHH
Q 028108          136 TALDSDDIEEETEEKVDKV  154 (213)
Q Consensus       136 ~~~~~~~~eee~d~~v~kV  154 (213)
                      +..    +|+|.+++++..
T Consensus       159 ~~~----DEdELe~ELe~L  173 (191)
T PTZ00446        159 NNV----DDDEIDKELDLL  173 (191)
T ss_pred             CCC----CHHHHHHHHHHH
Confidence            222    344445544443

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=3.8e-09  Score=88.60  Aligned_cols=151  Identities=16%  Similarity=0.250  Sum_probs=109.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 028108           21 LDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMH---LGESVAIARTVGHLSKSTEVM   97 (213)
Q Consensus        21 ~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~---lqt~~s~~~~~~sm~~s~~~M   97 (213)
                      .+=+--++++..++...|++.-+..-|.--..|-|+|.+-..|...-..|..+..|   |..+.+...+..+|+..+++|
T Consensus        35 KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~Am  114 (221)
T KOG1656|consen   35 KKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAM  114 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            33344577888888887887777766665556666666667776666666666666   677888889999999999999


Q ss_pred             HHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccCCCChhHHHHHHHHHHHHHHcchhhh---cCchhhh
Q 028108           98 KLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID--TALDSDDIEEETEEKVDKVLSEIAGETAA---QLPEAVR  171 (213)
Q Consensus        98 ~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d--~~~~~~~~eee~d~~v~kVldE~g~~~~~---~lp~~p~  171 (213)
                      +.+.+.||..++..+|++...|.+.+.-+.+.|+.=+.  ..+|+++...|-|++=+..||.--+++..   .||++|+
T Consensus       115 K~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs  193 (221)
T KOG1656|consen  115 KAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS  193 (221)
T ss_pred             HHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence            99999999999999999999999999888888887653  22554444455555555555544443332   4555554

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=98.70  E-value=1.4e-06  Score=73.92  Aligned_cols=141  Identities=15%  Similarity=0.147  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108           23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVN--RLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLV  100 (213)
Q Consensus        23 l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~--~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~  100 (213)
                      ++++-++....+|...++|.....++-.+.-.+.|....  ++..++++|+.+.+||++..++-....+|..+   =+.+
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v---~~~~   81 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQV---SGDM   81 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH
Confidence            788889999999999999988665555566666666655  99999999999999999999888887766655   3333


Q ss_pred             HhhCChHHHHHHHHHHHHHHHHhhhHHHHHh---hhhhhccCCCC--hhHHHHHHHHHHHHHHcchhhhcC
Q 028108          101 NNLMKAPEVAVTMQEFSKEMTKAGIIEEMVN---DTIDTALDSDD--IEEETEEKVDKVLSEIAGETAAQL  166 (213)
Q Consensus       101 n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~---d~~d~~~~~~~--~eee~d~~v~kVldE~g~~~~~~l  166 (213)
                      -+..-+-.=-..+..+.+.++.+-..=|.+.   ++++..++...  +..+.++.++..+..+-=+++-.|
T Consensus        82 ~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel  152 (204)
T COG5491          82 AKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLEL  152 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhh
Confidence            3321111111334466777888777777777   66665555544  333444555555555544444333

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=98.68  E-value=1.2e-05  Score=67.09  Aligned_cols=149  Identities=15%  Similarity=0.209  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHH
Q 028108           13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRL-YENKAQLNSISMHLGES---VAIARTVG   88 (213)
Q Consensus        13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l-~~~ka~L~sV~~~lqt~---~s~~~~~~   88 (213)
                      .++|-+..++++......+...|++++.|..+.|+.+    ++.+++...| -+..-||..|.-.+++.   .-..+++.
T Consensus        25 Rdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlll----LKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~  100 (209)
T KOG2910|consen   25 RDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLL----LKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVME  100 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555666666666677888888888776654    4455554444 34556676666555543   33447889


Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCch
Q 028108           89 HLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPE  168 (213)
Q Consensus        89 sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp~  168 (213)
                      .++.-+.+++.+|+.|++..+.++|++-....+-.+-+++|+.+.|..     ++++++.++++-+..|.-.+  .++|.
T Consensus       101 gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese~~~e--~e~Pe  173 (209)
T KOG2910|consen  101 GLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESELEVE--AELPE  173 (209)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHhhhh--hhcCC
Confidence            999999999999999999999999999999999999999999998873     34556777777776666554  67899


Q ss_pred             hhhh
Q 028108          169 AVRK  172 (213)
Q Consensus       169 ~p~~  172 (213)
                      +|+.
T Consensus       174 vPs~  177 (209)
T KOG2910|consen  174 VPST  177 (209)
T ss_pred             CCCC
Confidence            9886

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00015  Score=67.25  Aligned_cols=143  Identities=12%  Similarity=0.152  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108           13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSK   92 (213)
Q Consensus        13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~   92 (213)
                      .-.|.|++..|+++=++...+.+.+.|.|...-|..|.+..-+.-|...+.....-+|.+|-.++.++.+..-+-.+++.
T Consensus       242 ~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~Ayks  321 (439)
T KOG2911|consen  242 RAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKS  321 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcch
Q 028108           93 STEVMKLVNN-LMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGE  161 (213)
Q Consensus        93 s~~~M~~~n~-~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~  161 (213)
                      .+.+|+..+. -..+.++..+|.+..--+....-    ++++|.+..-..  .+..|+.+.+=|+++-.|
T Consensus       322 Gs~alK~il~~~~s~ekVed~Ldev~et~d~~~E----V~~~la~~~~~~--~d~~de~lEkEL~~L~~D  385 (439)
T KOG2911|consen  322 GSEALKAILAQGGSTEKVEDVLDEVNETLDRQEE----VEDALASYNVNN--IDFEDEDLEKELEDLEAD  385 (439)
T ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHH----HHHHHhcCCCCC--CccchHHHHHHHHHHHhc
Confidence            9999999999 45667799999998877776444    455555433221  112344445555555433

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00083  Score=56.53  Aligned_cols=141  Identities=16%  Similarity=0.178  Sum_probs=104.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108           15 LLLCCVLDIQREEKNVQKSIKESAKRND-MGSAKALAKEILMSRKAV----NRLYENKAQLNSISMHLGESVAIARTVGH   89 (213)
Q Consensus        15 ~l~R~i~~l~~eEkkl~~~IKkaakkg~-~~~arilAkelvr~Rk~~----~~l~~~ka~L~sV~~~lqt~~s~~~~~~s   89 (213)
                      .++.-|.+|+.+=-+++.+|++. .-|. ..+.|--|=.+++.||..    ..|+.-+=.|+.+.+-.++...+...+.+
T Consensus        30 Sve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~A  108 (218)
T KOG1655|consen   30 SVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAA  108 (218)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            67777888888888888888877 4444 456676666666666543    33444555566777777777888888899


Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHc
Q 028108           90 LSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIA  159 (213)
Q Consensus        90 m~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g  159 (213)
                      |+..++.|+..-+.+|..+|...=+++.-=++..+-++|.+.-....-   +.++++.+.+++-..+|.-
T Consensus       109 mK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p---eide~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen  109 MKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP---DIDEADLDAELDALGQELD  175 (218)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CcCHHHHHHHHHHHHhHhh
Confidence            999999999999999999999888888777888888888888776543   2345566777777766653

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.49  E-value=0.038  Score=47.30  Aligned_cols=86  Identities=10%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHcCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            8 IHTGLLLLLLCCVLDIQREEKNVQKSIKES---AKRND-------MGSAKALAKEILMSRKAVNRLYENKAQLNSISMHL   77 (213)
Q Consensus         8 ~~~~~~r~l~R~i~~l~~eEkkl~~~IKka---akkg~-------~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~l   77 (213)
                      -.++.+..|++.|.+|+.+..+.+..|++.   ++.+.       ...-|.|=+++-+..++..++-.....|+......
T Consensus        22 ~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~  101 (211)
T PTZ00464         22 RIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTK  101 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666665555555554322   11111       11234555555566666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028108           78 GESVAIARTVGHLSKS   93 (213)
Q Consensus        78 qt~~s~~~~~~sm~~s   93 (213)
                      .+..+|..-+.+|+..
T Consensus       102 ~vv~amk~g~kaLK~~  117 (211)
T PTZ00464        102 VQVDAMKQAAKTLKKQ  117 (211)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666666655

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.18  Score=43.08  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             chhh--hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---
Q 028108            2 IFYA--KKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAK--EILMSRKAVNRLYENKAQLNSIS---   74 (213)
Q Consensus         2 ~~~~--~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAk--elvr~Rk~~~~l~~~ka~L~sV~---   74 (213)
                      +|++  ++-+..++|.+.+-||+=.|.=.+....|+..=++- ....|-.||  ++.-.|-..+-+++.+-+++-+-   
T Consensus         3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv-~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sK   81 (227)
T KOG3229|consen    3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKV-QKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESK   81 (227)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6777  778888888887777764443333333332221111 112222332  33444444555666655554332   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH---------HHHHHHHHhhhHHHHHhhhhhhccCCCChhH
Q 028108           75 MHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQ---------EFSKEMTKAGIIEEMVNDTIDTALDSDDIEE  145 (213)
Q Consensus        75 ~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~---------~f~ke~~~~~~~~emm~d~~d~~~~~~~~ee  145 (213)
                      .+|.      .+.-.|+..-.+..-.+.+=+-.++-+.|+         .--++|.+==++..+|++++|++++.-++.+
T Consensus        82 Aqln------Sv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~e  155 (227)
T KOG3229|consen   82 AQLN------SVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSE  155 (227)
T ss_pred             HHHh------hHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            2333      233333333333333333222222222222         2234555555777899999999999888888


Q ss_pred             HHHHHHHHHHHHHcchh-hhcCchhhhh
Q 028108          146 ETEEKVDKVLSEIAGET-AAQLPEAVRK  172 (213)
Q Consensus       146 e~d~~v~kVldE~g~~~-~~~lp~~p~~  172 (213)
                      +-++.++.-.|.|--.+ +..+|.+|..
T Consensus       156 emeEe~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  156 EMEEEADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             hHHHHHHHHHHHHHHHHhccccccCCcc
Confidence            89999999999997654 4557777775

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=96.97  E-value=0.004  Score=50.06  Aligned_cols=149  Identities=14%  Similarity=0.221  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH---HHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108           11 GLLLLLLCCVLDIQREEKNVQKSIKES---AKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTV   87 (213)
Q Consensus        11 ~~~r~l~R~i~~l~~eEkkl~~~IKka---akkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~   87 (213)
                      +.+..|...++.|+++.+++..+|++.   +++--...-+..|+.+.+.++...+.+   .++.....+|.+.......+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~---~~~~~~~~~l~~~~~~ie~a   77 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQL---EKLLNQLSNLESVLLQIETA   77 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999998864   444445566788888888887765544   46677778888888888888


Q ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHH-----HHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchh
Q 028108           88 GHLSKSTEVMKLVNNLMKAPEVAVTMQ-----EFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGET  162 (213)
Q Consensus        88 ~sm~~s~~~M~~~n~~m~l~~l~~~M~-----~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~  162 (213)
                      .....++.+|...++.  +.++.+.|.     ++-.++...--..+.++++|.+.+  ....+..|++++..|+++.-+.
T Consensus        78 ~~~~~v~~al~~~~~~--Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~--~~~~~~dd~ele~eL~~l~~e~  153 (171)
T PF03357_consen   78 QSNQQVVKALKQSSKA--LKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSM--DQVDDVDDEELEEELEQLEDEI  153 (171)
T ss_dssp             HHHHHHSSS----SHH--HHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCHHHHHHHHHHHHHHH
Confidence            8888888888888877  555554443     222222222222222333333210  1114556678888888887766


Q ss_pred             hhcC
Q 028108          163 AAQL  166 (213)
Q Consensus       163 ~~~l  166 (213)
                      ....
T Consensus       154 ~~~~  157 (171)
T PF03357_consen  154 EEEE  157 (171)
T ss_dssp             CTTS
T ss_pred             hhhh
Confidence            5554

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PRK10698 phage shock protein PspA; Provisional

Probab=96.28  E-value=0.63  Score=39.98  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 028108           13 LLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKA-------LAKEILMSRKAVNRLYE----NKAQLNSISMHLGESV   81 (213)
Q Consensus        13 ~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~ari-------lAkelvr~Rk~~~~l~~----~ka~L~sV~~~lqt~~   81 (213)
                      -+.+.|++..++..-.+...+-..|+.+|+-+-||-       |+..+...+.+....-.    ++.++..+..+++.+.
T Consensus        54 ~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak  133 (222)
T PRK10698         54 KKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR  133 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888889999999999999998888       88777777666554433    3555555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 028108           82 AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTK  122 (213)
Q Consensus        82 s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~  122 (213)
                      +-...-.+=..++.....+|..+.--.....|..|++=-++
T Consensus       134 ~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~k  174 (222)
T PRK10698        134 ARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERR  174 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            55555555555566666666665554455666666653333

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.88  Score=38.63  Aligned_cols=116  Identities=11%  Similarity=0.253  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH-HHh
Q 028108           45 SAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEM-TKA  123 (213)
Q Consensus        45 ~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~-~~~  123 (213)
                      -.|-|.+.+...|-+   +...+.+++.+-+.-+-+.+|.-++++|....+-|.--.    +.+|..-...-+..+ ++-
T Consensus        67 RtR~~i~kf~~~kaq---iqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq----~qkIm~eFekQse~Mdm~~  139 (224)
T KOG3230|consen   67 RTRRYIKKFQNMKAQ---IQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQ----IQKIMQEFEKQSEIMDMKE  139 (224)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHH
Confidence            456777777766544   556677888888887778888888888887765554322    344433333333333 346


Q ss_pred             hhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcCch
Q 028108          124 GIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQLPE  168 (213)
Q Consensus       124 ~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~lp~  168 (213)
                      +|+.+-|+|+|++.-++++-|+-+...++.|==.++-+++ .+|+
T Consensus       140 Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~-~~P~  183 (224)
T KOG3230|consen  140 EMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLS-SLPS  183 (224)
T ss_pred             HHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhc-cCcc
Confidence            7788999999987777777778888888887666765544 4554

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.89  E-value=2.6  Score=34.97  Aligned_cols=92  Identities=17%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHH
Q 028108           73 ISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVD  152 (213)
Q Consensus        73 V~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~  152 (213)
                      ..+++.-+-+|.....+|+...+.|.-=--.-+...+++.  ++..++ .-+|++..++|.||..-|.++.+.-+...++
T Consensus        91 M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~a--nmKMem-TeEMiNDTLDdild~sgDeeEs~aiVNqVLD  167 (208)
T KOG3231|consen   91 MNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKA--NMKMEM-TEEMINDTLDDILDGSGDEEESQAIVNQVLD  167 (208)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHH--HHHhhh-HHHHHHhhHHHHhcCCCcHHHHHHHHHHHHH
Confidence            3444444444444444555444445433333334444432  233333 2367889999999988888888888899999


Q ss_pred             HHHHHHcchhhhcCch
Q 028108          153 KVLSEIAGETAAQLPE  168 (213)
Q Consensus       153 kVldE~g~~~~~~lp~  168 (213)
                      .|=-|+...+. +.|+
T Consensus       168 EIGIEisgKma-~~P~  182 (208)
T KOG3231|consen  168 EIGIEISGKMA-KAPS  182 (208)
T ss_pred             Hhhhhhcchhc-cCCc
Confidence            99999987654 5553

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.66  E-value=3.7  Score=34.34  Aligned_cols=118  Identities=13%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHh
Q 028108           52 EILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVN  131 (213)
Q Consensus        52 elvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~  131 (213)
                      +.++.=+-..|+-...++++.-...-+-..+|..+..+|.++   |+.||=..=-.=+-++=.+|+-=--..++.+.+|.
T Consensus        64 e~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~a---lktmNLekis~~MDkFE~qFedldvqt~~me~~m~  140 (203)
T KOG3232|consen   64 EAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSA---LKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMS  140 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhcc
Confidence            334444445566666666665554444555666777777666   55555332222223444455555555666667776


Q ss_pred             hhhhhccCCCChhHHHHHHHHHHHHHHcchhhhcC-chhhhh
Q 028108          132 DTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQL-PEAVRK  172 (213)
Q Consensus       132 d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~l-p~~p~~  172 (213)
                      ++-.-.+..++.+.-....-+.-=-|+..++.... |..|.+
T Consensus       141 ~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~  182 (203)
T KOG3232|consen  141 GSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVK  182 (203)
T ss_pred             CcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCC
Confidence            65544444444444444444444445554444444 455554

>TIGR02977 phageshock_pspA phage shock protein A

Probab=93.57  E-value=4.1  Score=34.64  Aligned_cols=109  Identities=12%  Similarity=0.081  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 028108           14 LLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAV-----------NRLYENKAQLNSISMHLGESVA   82 (213)
Q Consensus        14 r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~-----------~~l~~~ka~L~sV~~~lqt~~s   82 (213)
                      +.++|++..++..-.+...+.+.|+++|+-+-||-.+..-.....+.           ...-.++.+|..+..++..+.+
T Consensus        55 k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~  134 (219)
T TIGR02977        55 KELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA  134 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777888888888999999999999887764432222222222           1122333444444444555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 028108           83 IARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTK  122 (213)
Q Consensus        83 ~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~  122 (213)
                      ....-.+=..++.....+|..+.--.+...+..|++=-++
T Consensus       135 k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       135 RQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            4443222233444455555554433344555555554433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=93.36  E-value=1.9  Score=35.28  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 028108           20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR----TVGHLSKSTE   95 (213)
Q Consensus        20 i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~----~~~sm~~s~~   95 (213)
                      -++-...-++...+|-..++.|+.+.||+-+.++|+-.+...=|--+-.-.+-+..++........    +-.++.+.  
T Consensus        15 ~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p~~l~eAi~si--   92 (165)
T PF03398_consen   15 QNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECPPELKEAISSI--   92 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSSCCHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHH--
Confidence            344455677888999999999999999999999999999999888888888888888776655432    33344433  


Q ss_pred             HHHHHHhhCChHHHHHH----HHHHHHHHHHhhhH--HHHHhhhhhhccCCCC-hhHHHHHHHHHHHHHHcch
Q 028108           96 VMKLVNNLMKAPEVAVT----MQEFSKEMTKAGII--EEMVNDTIDTALDSDD-IEEETEEKVDKVLSEIAGE  161 (213)
Q Consensus        96 ~M~~~n~~m~l~~l~~~----M~~f~ke~~~~~~~--~emm~d~~d~~~~~~~-~eee~d~~v~kVldE~g~~  161 (213)
                       +=...+.-++|++..+    +..|.++|...-+-  ...+++-+-.-+.... .++.++..+..|+.|+|++
T Consensus        93 -iyAa~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e~~i~  164 (165)
T PF03398_consen   93 -IYAAPRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKEYGIP  164 (165)
T ss_dssp             -HHHHHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHHCT-S
T ss_pred             -HHHhhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHHcCCC
Confidence             6666666788888654    44455555432111  2222222211121111 2345566666666666653

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.14  E-value=4.7  Score=33.98  Aligned_cols=54  Identities=11%  Similarity=-0.021  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHH
Q 028108           12 LLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYE   65 (213)
Q Consensus        12 ~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~   65 (213)
                      ..+.+.+++..+++.-.+...+.+.|+++|+-+.||-++........++..|-.
T Consensus        52 ~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~  105 (221)
T PF04012_consen   52 NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ  105 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445777888888888889999999999999999999888877777666655543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=87.24  E-value=17  Score=30.71  Aligned_cols=86  Identities=9%  Similarity=0.112  Sum_probs=47.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH--HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 028108           16 LLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKA--VNRLYE-------NKAQLNSISMHLGESVAIART   86 (213)
Q Consensus        16 l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~--~~~l~~-------~ka~L~sV~~~lqt~~s~~~~   86 (213)
                      ..+-|.+|......|....+..=++  ++.....|+.+++..+-  +.++++       ...++.+-...|.++..+..-
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~k--Ie~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~  102 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKK--IKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLEN  102 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778888877777776665443  33344556766655442  333333       233344444445555555554


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028108           87 VGHLSKSTEVMKLVNNL  103 (213)
Q Consensus        87 ~~sm~~s~~~M~~~n~~  103 (213)
                      ...=..+..+|+..|+.
T Consensus       103 a~~~~ev~~aLk~g~~a  119 (191)
T PTZ00446        103 MHLHKIAVNALSYAANT  119 (191)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44445555666666655

>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.96  E-value=14  Score=27.45  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108           56 SRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID  135 (213)
Q Consensus        56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d  135 (213)
                      .++...|+-+...|+.+|..-+..-.-...+...+..+..++..++..                     +.++-+.+.+.
T Consensus         8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~---------------------vl~~hl~~cv~   66 (89)
T COG1937           8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE---------------------VLEEHLKECVK   66 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            567888999999999999988888777777777777776556555543                     56777777775


Q ss_pred             hccCCCChhHHHHHHHH
Q 028108          136 TALDSDDIEEETEEKVD  152 (213)
Q Consensus       136 ~~~~~~~~eee~d~~v~  152 (213)
                      ....+.+.++..+++++
T Consensus        67 ~a~~~~~~~~~i~el~~   83 (89)
T COG1937          67 RAVEDGDEEESIDELIK   83 (89)
T ss_pred             HHhhccchHhHHHHHHH
Confidence            54443333444444443

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=82.47  E-value=30  Score=29.45  Aligned_cols=118  Identities=16%  Similarity=0.207  Sum_probs=70.2

Q ss_pred             chhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHHH
Q 028108            2 IFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSR-KAVNRLYENKAQ-----LNSISM   75 (213)
Q Consensus         2 ~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~R-k~~~~l~~~ka~-----L~sV~~   75 (213)
                      +|+|+    ..|-.-||.|..|.++.-++.+=.|+..+  ..+.=|.+|++|||-. |-..+|+-=+-+     |+.+.-
T Consensus         4 lfsK~----~~Itd~DrAIL~lK~QRdkl~qyqkR~e~--~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~   77 (209)
T KOG2910|consen    4 LFSKK----SRITDQDRAILSLKTQRDKLKQYQKRLEK--QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDN   77 (209)
T ss_pred             cccCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56662    33456688888888888888777776654  3566789999999863 333333222222     333333


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108           76 H---LGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID  135 (213)
Q Consensus        76 ~---lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d  135 (213)
                      +   |..+.+....+.-=+.+...++.-|..  +.+++..|.        .+=.+.+|+|+=+
T Consensus        78 qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~~--------ideV~rimddt~e  130 (209)
T KOG2910|consen   78 QLINLEQMVSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEFD--------IDEVDRIMDDTQE  130 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcC--------HHHHHHHHHhHHH
Confidence            3   445555555666666677777777776  555554332        1225556666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	213
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		5e-30
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		1e-27
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		2e-25

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 103/149 (69%)
Query: 22  DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
           DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct: 32  DIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 91
Query: 82  AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
           A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct: 92  AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 151
Query: 142 DIEEETEEKVDKVLSEIAGETAAQLPEAV 170
           ++EEE E ++D++L EI      + P  V
Sbjct: 152 EMEEEAEMEIDRILFEITAGALGKAPSKV 180

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 84/115 (73%)
Query: 22  DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
           DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct: 38  DIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 97
Query: 82  AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDT 136
           A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++
Sbjct: 98  AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES 152

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 93/146 (63%)
Query: 22  DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
           DIQREE+ V++S+K++AK+        LAKE + SRKAV++LY +KA  NS+       +
Sbjct: 32  DIQREEEKVKRSVKDAAKKGQKDVCIVLAKEXIRSRKAVSKLYASKAHXNSVLXGXKNQL 91
Query: 82  AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
           A+ R  G L KSTEV K   +L+K PE+  T +E SKE  KAGIIEEM+ DT ++  D +
Sbjct: 92  AVLRVAGSLQKSTEVXKAXQSLVKIPEIQATXRELSKEXXKAGIIEEMLEDTFESMDDQE 151
Query: 142 DIEEETEEKVDKVLSEIAGETAAQLP 167
           + EEE E ++D++L EI      + P
Sbjct: 152 EXEEEAEXEIDRILFEITAGALGKAP 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	1e-32
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	4e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  116 bits (291), Expect = 1e-32
 Identities = 79/192 (41%), Positives = 122/192 (63%), Gaps = 5/192 (2%)

Query: 22  DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
           DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct: 32  DIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 91

Query: 82  AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
           A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct: 92  AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 151

Query: 142 DIEEETEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEEL 201
           ++EEE E ++D++L EI      + P  V           A  + +++      ++EE L
Sbjct: 152 EMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEE-----EEEEAL 206

Query: 202 EELRARLDKVRS 213
           E +++RL  +RS
Sbjct: 207 EAMQSRLATLRS 218

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  109 bits (272), Expect = 4e-30
 Identities = 69/146 (47%), Positives = 102/146 (69%)

Query: 22  DIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESV 81
           DIQREE+ V++S+K++AK+        LAKE++ SRKAV++LY +KA +NS+ M +   +
Sbjct: 32  DIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQL 91

Query: 82  AIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSD 141
           A+ R  G L KSTEVMK + +L+K PE+  TM+E SKEM KAGIIEEM+ DT ++  D +
Sbjct: 92  AVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQE 151

Query: 142 DIEEETEEKVDKVLSEIAGETAAQLP 167
           ++EEE E ++D++L EI      + P
Sbjct: 152 EMEEEAEMEIDRILFEITAGALGKAP 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 33/252 (13%), Positives = 76/252 (30%), Gaps = 65/252 (25%)

Query: 21  LDIQREEK--NVQKSIKESAKRND------M-GSAK-ALAKEILMSRKAVNRLYENK--- 67
            ++ R +    +++++ E  +         + GS K  +A ++ +S K V    + K   
Sbjct: 129 YNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYK-VQCKMDFKIFW 186

Query: 68  -------------AQLNSISMHLGES-VAIARTVGHLSKSTEVMKL-VNNLMKAP----- 107
                          L  +   +  +  + +    ++      ++  +  L+K+      
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 108 -----EV--AVTMQEF---SKEM--TKAGIIEEMVNDTIDTALDSDDIEEE-TEEKVDKV 154
                 V  A     F    K +  T+   + + ++    T +  D      T ++V  +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 155 LSEIAGETAAQLPEAVRK----------ERSRVPAQR------ASTSQQEQAIAEGVDDE 198
           L +        LP  V            E  R            +  +    I   ++  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 199 EELEELRARLDK 210
           E   E R   D+
Sbjct: 367 EP-AEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	98.9
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.13
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.5
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	97.1
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	96.84
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	96.69
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	90.8
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	82.52
3twe_A	27	Alpha4H; unknown function; HET: PGE; 1.36A {Synthe	82.27

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-53  Score=357.63  Aligned_cols=203  Identities=40%  Similarity=0.574  Sum_probs=131.1

Q ss_pred             hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            5 AKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIA   84 (213)
Q Consensus         5 ~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~   84 (213)
                      .++..+...|+|+|++++|+++|++++.+||++||+||+++|||||++|||+|+++.+||++++||++|++||++++++.
T Consensus        15 ~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~   94 (218)
T 3frt_A           15 WSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL   94 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhh
Q 028108           85 RTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAA  164 (213)
Q Consensus        85 ~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~  164 (213)
                      +++++|++++++|+.||++||+|+|+++|++|++||+++||++|||+|+|++++++++++|++|++|+|||+|||.+   
T Consensus        95 ~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~---  171 (218)
T 3frt_A           95 RVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAG---  171 (218)
T ss_dssp             ----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHh---
Confidence            99999999999999999999999999999999999999999999999999998888889999999999999999965   


Q ss_pred             cCchhhhhhccccccccccchhHHhhhh-ccCCChHhHHHHHHHHHhhhC
Q 028108          165 QLPEAVRKERSRVPAQRASTSQQEQAIA-EGVDDEEELEELRARLDKVRS  213 (213)
Q Consensus       165 ~lp~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~L~~RL~aLr~  213 (213)
                      +|+.+|.++....|.+.   ++...+.. +++++++++++|++||++|||
T Consensus       172 ~l~~~p~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          172 ALGKAPSKVTDALPEPE---PPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             --------------------------------------------------
T ss_pred             HhhcCCCCCCCCCCCcc---ccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            45555443111122211   10011111 123345668999999999996

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=4.6e-42  Score=283.41  Aligned_cols=163  Identities=43%  Similarity=0.614  Sum_probs=130.7

Q ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            6 KKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR   85 (213)
Q Consensus         6 ~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~   85 (213)
                      ++-.+..+|+|+|++++|+++|++++.+||+++++||+++|||||++|||.|+++.+||.++++|++|+++|+++.++.+
T Consensus        16 ~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~   95 (179)
T 2gd5_A           16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR   95 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhc
Q 028108           86 TVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQ  165 (213)
Q Consensus        86 ~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~  165 (213)
                      ++++|++++++|+.+|++||+|+|+++|++|++|++++|+++|||+|+|++++++++++|++|++|++||+|+|+   ++
T Consensus        96 v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~---~~  172 (179)
T 2gd5_A           96 VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GA  172 (179)
T ss_dssp             HTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC-------
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH---hh
Confidence            999999999999999999999999999999999999999999999999999888888999999999999999996   47


Q ss_pred             Cchhhh
Q 028108          166 LPEAVR  171 (213)
Q Consensus       166 lp~~p~  171 (213)
                      ||.+|+
T Consensus       173 l~~~P~  178 (179)
T 2gd5_A          173 LGKAPS  178 (179)
T ss_dssp             ------
T ss_pred             cccCCC
Confidence            887775

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=98.90  E-value=1.7e-10  Score=75.96  Aligned_cols=49  Identities=20%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcchhhhcCchhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108          147 TEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS  213 (213)
Q Consensus       147 ~d~~v~kVldE~g~~~~~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~  213 (213)
                      +|++|+||+||+|++++.+||.+|.+. +  +.         . ..     ..+.|+|.+||++||+
T Consensus         2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~-~--~~---------~-~~-----~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            2 VDMLLQEMADEAGLDLNMELPQGQTGS-V--GT---------S-VA-----SAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCHHHHHHHHHTTCC---------CHH-H--HH---------H-HH-----HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhCchHHhhcccccccc-c--CC---------C-CC-----cccHHHHHHHHHHHhC
Confidence            688999999999999999999988751 1  00         0 11     1234899999999996

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.13  E-value=2.3e-06  Score=72.20  Aligned_cols=152  Identities=15%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             hhhhhhHHHHHHHH----HHHHhHHHHHHHHHH---HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            5 AKKIHTGLLLLLLC----CVLDIQREEKNVQKS---IKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHL   77 (213)
Q Consensus         5 ~~~~~~~~~r~l~R----~i~~l~~eEkkl~~~---IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~l   77 (213)
                      .++.+..++|+..|    .++.|+|+-.++..+   ++..+|+--..+=.--|+=+.   +...|.-+...+|....++|
T Consensus         4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilA---kelVR~Rk~~~rl~~~kaqL   80 (218)
T 3frt_A            4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLA---KEMIRSRKAVSKLYASKAHM   80 (218)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            35566666665555    555666666655544   333333321111111112111   23445555667788888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH--HHHHH---HHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHH
Q 028108           78 GESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTM--QEFSK---EMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVD  152 (213)
Q Consensus        78 qt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M--~~f~k---e~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~  152 (213)
                      ++...-.+...++..++..|+.+.+.  +..+.+.|  +++.+   +|++--+.-++++++|++++++.+++++.+++++
T Consensus        81 ~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d  158 (218)
T 3frt_A           81 NSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAE  158 (218)
T ss_dssp             HHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHH
Confidence            99888888888888888888888777  45555555  45544   4555555566788999999886655556677888


Q ss_pred             HHHHHHcch
Q 028108          153 KVLSEIAGE  161 (213)
Q Consensus       153 kVldE~g~~  161 (213)
                      .+++.+--+
T Consensus       159 ~~v~kVldE  167 (218)
T 3frt_A          159 MEIDRILFE  167 (218)
T ss_dssp             THHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            888877333

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.50  E-value=4.7e-05  Score=61.91  Aligned_cols=147  Identities=14%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108            9 HTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSR-KAVNRLYENKAQLNSISMHLGESVAIARTV   87 (213)
Q Consensus         9 ~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~R-k~~~~l~~~ka~L~sV~~~lqt~~s~~~~~   87 (213)
                      .+...+.|.+.++.|+|+-.++..+-|+.-..= ..+++--..+.+|.. +...|.-+...+|....++|++.....+..
T Consensus        12 lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~   90 (179)
T 2gd5_A           12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQ   90 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566777888888888888877665442110 112221111222211 223333445667777788888888877777


Q ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHH
Q 028108           88 GHLSKSTEVMKLVNNLMKAPEVAVTM-----QEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEI  158 (213)
Q Consensus        88 ~sm~~s~~~M~~~n~~m~l~~l~~~M-----~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~  158 (213)
                      .++..++.+|+..++.  +..+.+.|     ...-.+|++.-..-++++++|++++++..++++.+++++.+++.+
T Consensus        91 ~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A           91 LAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             HHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            7777777777776666  34444444     344455555555556668999998876555556667777777665

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=97.10  E-value=8.6e-05  Score=46.22  Aligned_cols=16  Identities=50%  Similarity=0.779  Sum_probs=13.9

Q ss_pred             hHhHHHHHHHHHhhhC
Q 028108          198 EEELEELRARLDKVRS  213 (213)
Q Consensus       198 ~~~~d~L~~RL~aLr~  213 (213)
                      ++++..||.||++|||
T Consensus        25 Eedi~~MqsRLaALRS   40 (40)
T 2xze_Q           25 EEALEAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            4567899999999997

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=96.84  E-value=0.003  Score=47.20  Aligned_cols=70  Identities=21%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             hCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccCCCChhHHHHHHHHHHHHHHcch----hhhcCchhhhh
Q 028108          103 LMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID--TALDSDDIEEETEEKVDKVLSEIAGE----TAAQLPEAVRK  172 (213)
Q Consensus       103 ~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d--~~~~~~~~eee~d~~v~kVldE~g~~----~~~~lp~~p~~  172 (213)
                      .|++.++..+|.++.-+++..+=+++++...+.  +.+|+++.++|-+.+-...+++--++    ....||++|++
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~   77 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSI   77 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Confidence            478999999999999999999999999988763  22332233333344444444442222    22358888876

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.00041  Score=46.03  Aligned_cols=12  Identities=33%  Similarity=0.689  Sum_probs=11.1

Q ss_pred             HHHHHHHHHhhh
Q 028108          201 LEELRARLDKVR  212 (213)
Q Consensus       201 ~d~L~~RL~aLr  212 (213)
                      .||||+||++||
T Consensus        40 ddDLQARLdsLR   51 (54)
T 2v6x_B           40 DDDLQARLNTLK   51 (54)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhc
Confidence            389999999998

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=90.80  E-value=0.13  Score=29.53  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=13.1

Q ss_pred             hHhHHHHHHHHHhhhC
Q 028108          198 EEELEELRARLDKVRS  213 (213)
Q Consensus       198 ~~~~d~L~~RL~aLr~  213 (213)
                      ++.+|.|-+||.+||+
T Consensus        14 eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           14 DEKEDKLAQRLRALRG   29 (29)
T ss_pred             chhhHHHHHHHHHHcC
Confidence            3445899999999995

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=82.52  E-value=18  Score=29.30  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 028108           25 REEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIA----RTVGHLSKSTEVMKLV  100 (213)
Q Consensus        25 ~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~----~~~~sm~~s~~~M~~~  100 (213)
                      ..-++...+|-+.++.|..+.||+-+.++||--+.+.=|--+---.+-+..|+.......    .+..++.+.   +=..
T Consensus        33 ~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~cp~~l~EAvssl---IyAa  109 (191)
T 3frr_A           33 ELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL---IWAA  109 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSCCGGGHHHHHHH---HHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH---HHhh
Confidence            345678889999999999999999999999999998888777777777777776665433    233344433   7677


Q ss_pred             Hhh-CChHHHHHH----HHHHHHHHHH
Q 028108          101 NNL-MKAPEVAVT----MQEFSKEMTK  122 (213)
Q Consensus       101 n~~-m~l~~l~~~----M~~f~ke~~~  122 (213)
                      .+. -++|+|..+    ...|.++|..
T Consensus       110 ~R~~~elpEL~~ir~~l~~KyGkeF~~  136 (191)
T 3frr_A          110 PRLQSEVAELKIVADQLCAKYSKEYGK  136 (191)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred             hcccccChHHHHHHHHHHHHhCHHHHH
Confidence            775 789998754    5556666654

>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*

Probab=82.27  E-value=0.77  Score=25.13  Aligned_cols=13  Identities=62%  Similarity=0.961  Sum_probs=11.4

Q ss_pred             hHHHHHHHHHhhh
Q 028108          200 ELEELRARLDKVR  212 (213)
Q Consensus       200 ~~d~L~~RL~aLr  212 (213)
                      +++|||+||..||
T Consensus         9 eledlqerlrklr   21 (27)
T 3twe_A            9 ELEDLQERLRKLR   21 (27)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4689999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00