Citrus Sinensis ID: 028133

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MASMIVASSNAKPLSPLPITSQSPKPRIQIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccEcccccccccccEccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MASMIvassnakplsplpitsqspkpriqipqikipqKLLKLSSSALKSLSAVAVTslafsppsLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDkiyysplgnfmdERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ
Flexible Loop (DISEMBL)
MASMIVASsnakplsplpitsqspkpriqiPQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIaalseeivrkvlpvq
Low Complexity Region (SEG)
MASMIVASSNAKPLSPLPITsqspkpriqipqikipqkllklsssalkslsavavtslaFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQaaavmraaraeisaaLTKMKKETQLEVEQKLAVGRKKIeaelqealanleRQKEDTIKSLDSQIAALSEEIVRKVLPVQ
Disordered region (IsUnstruct)
**************************************LL******LKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFM**********************************************************************************************************
Disordered Region (DISOPRED)
************************************************SLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDN******************************************************************************I*SLDSQIAALSEEIVRKVLP**
Disordered Region (DISEMBL)
***********KPLSPLPITSQSPKPRIQIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNS**********LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ
Disordered Region (DISPRO)
*************LSPLPITSQSPKPRIQIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASMIVASSNAKPLSPLPITSQSPKPRIQIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAxxxxxxxxxxxxxxxxxxxxxxxxxxxxARAEISAALTKMKKETQLEVEQKLAVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIVRKVLPVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
P31853	222	ATP synthase subunit b',	N/A	no	0.830	0.797	0.728	3e-66
A8J785	209	ATP synthase subunit b',	N/A	no	0.840	0.856	0.353	5e-29
P48085	164	ATP synthase B' chain, cy	N/A	no	0.699	0.908	0.366	9e-18
Q112Z3	161	ATP synthase subunit b' O	yes	no	0.661	0.875	0.347	3e-16
Q8DLP6	138	ATP synthase subunit b' O	yes	no	0.624	0.963	0.333	5e-15
A6MVW7	155	ATP synthase subunit b',	N/A	no	0.652	0.896	0.333	5e-14
B0BZK9	142	ATP synthase subunit b' O	yes	no	0.647	0.971	0.304	7e-14
B1XHZ1	161	ATP synthase subunit b' O	yes	no	0.661	0.875	0.312	1e-13
Q1XDP2	156	ATP synthase subunit b',	N/A	no	0.690	0.942	0.346	2e-13
Q6B8R1	158	ATP synthase subunit b',	N/A	no	0.661	0.892	0.34	2e-13

>sp|P31853|ATPX_SPIOL ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 155/188 (82%), Gaps = 11/188 (5%)

Query: 29  QIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFS----PPSLAAEIEKAALFDFNLTLPII 84
           Q+P +K       L+ S LKS +A+  T L  S     PSLA EIEKA+LFDFNLTLPII
Sbjct: 41  QLPPLK------HLNLSVLKS-AAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPII 93

Query: 85  MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARA 144
           M EFL LMFALDKIYY+PLG+FMD+RD +IKE+L+ VKDTS EVKQLEEQA AVMRAARA
Sbjct: 94  MAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARA 153

Query: 145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEE 204
           EISAAL KMKKETQLEVE KLA GRKKIE ELQEAL +LE+QKEDTIKSLDSQI+ALS++
Sbjct: 154 EISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDD 213

Query: 205 IVRKVLPV 212
           IV+KVLPV
Sbjct: 214 IVKKVLPV 221

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.
Spinacia oleracea (taxid: 3562)

>sp|A8J785|ATPX_CHLRE ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 119/195 (61%), Gaps = 16/195 (8%)

Query: 17  LPITSQSPKPRIQIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFD 76
           L + + + KP+ Q+ Q+  P            +LSA+   +L   P    A  E   +FD
Sbjct: 26  LVVRASAQKPQQQLAQLAKP------------ALSAIVANALMAMP----AAAEAGKIFD 69

Query: 77  FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAA 136
           FNLTLP++  EFL+LM  L+K +++P+G  +DERDN I+ KL SVKD + +V +L  +A 
Sbjct: 70  FNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDKLVLEAE 129

Query: 137 AVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS 196
            ++++AR+++SA +   K   Q E+++     + KI AE++ ++A LE++    +KSLD+
Sbjct: 130 TILKSARSDVSAMINTKKAAKQSELDKTYNEAKAKITAEVESSIAGLEQESASMLKSLDA 189

Query: 197 QIAALSEEIVRKVLP 211
           Q+  +S E++++VLP
Sbjct: 190 QVDKISAEVLKRVLP 204

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 65  LAAEIEKA----ALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNS 120
           LA E E A     LFDF+ TLP++MV+ LVLM  L+ ++Y PL   +DER   I+   N 
Sbjct: 8   LAIETEAAKPEGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNE 67

Query: 121 VKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL 180
            +    +  +L  Q    +  AR   S      + E Q  V +KL   +KK ++EL  A 
Sbjct: 68  AEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASAT 127

Query: 181 ANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ 213
             LE QK++ +KSL+S++  LS +I+ K+L +Q
Sbjct: 128 NKLELQKDEALKSLESEVQTLSTKILEKLLGIQ 160

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Cyanophora paradoxa (taxid: 2762)

>sp|Q112Z3|ATPX_TRIEI ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 81/141 (57%)

Query: 70  EKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVK 129
           EK  LFD N TLP++ ++FL+L F LDKI+Y PLG  +D R + I+E     K+   + K
Sbjct: 15  EKGGLFDINATLPLMAIQFLLLAFVLDKIFYKPLGKAIDSRADYIRENQVKAKERLAKAK 74

Query: 130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED 189
           QL EQ        R +    +   + E +     K+AV +K+ + + ++A   +E+QKE 
Sbjct: 75  QLAEQYEQEFAQTRQKSQVVIVAAQAEAEKIAATKVAVAQKEAQVKREQAAQEIEKQKEV 134

Query: 190 TIKSLDSQIAALSEEIVRKVL 210
            ++ L+ Q+ +LS +I+ K+L
Sbjct: 135 ALEQLEEQVDSLSRQILEKLL 155

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|Q8DLP6|ATPX_THEEB ATP synthase subunit b' OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG PE=3 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 87/141 (61%), Gaps = 8/141 (5%)

Query: 74  LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKD----TSEEVK 129
           +FDF+ TLP++ V+FL+L   L+ + Y PLG  +D RD  I+  L   K+     +E  +
Sbjct: 1   MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAQ 60

Query: 130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED 189
           Q E++ A+  R A+A I  A  + +K    E+    A  ++ ++AEL +  A +++QK+ 
Sbjct: 61  QYEQELASTRRQAQALIEEARVEAQKIATAEI----AEAQQAVQAELLKIQAEIDQQKQA 116

Query: 190 TIKSLDSQIAALSEEIVRKVL 210
           T+++L+ Q+A+LSE+++ K++
Sbjct: 117 TLQALEGQVASLSEQLLAKLM 137

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|A6MVW7|ATPX_RHDSA ATP synthase subunit b', chloroplastic OS=Rhodomonas salina GN=atpG PE=3 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 86/147 (58%), Gaps = 8/147 (5%)

Query: 71  KAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDT---SEE 127
           +  LFDFN TLP+++++ L+LM  L+ I+Y+P+   +DERD  I++ L    +T   +E 
Sbjct: 10  EGGLFDFNATLPLMVLQILLLMVVLNAIFYTPIARVLDERDEYIRKNLTQASETLAKAEA 69

Query: 128 V-KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQ 186
           + KQ E+  A   R A+  I+++  + ++   +E++Q     +K  E  + EA   L  Q
Sbjct: 70  ITKQYEQDLAKERRDAQMIIASSQQEAQEIVAMEIKQ----AQKDTELLVNEATTQLNSQ 125

Query: 187 KEDTIKSLDSQIAALSEEIVRKVLPVQ 213
           KE  +++L+ Q+  LSE+I  K+L  Q
Sbjct: 126 KEKALQALEKQVNTLSEQIKNKLLSGQ 152

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Rhodomonas salina (taxid: 52970)

>sp|B0BZK9|ATPX_ACAM1 ATP synthase subunit b' OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 76/138 (55%)

Query: 74  LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEE 133
           +FDFN TLP++M +F +L+  L+ +++ PL   +DERD  I+      ++   + K L E
Sbjct: 1   MFDFNGTLPLMMFQFFLLVAVLNAVFFKPLTQAIDERDGFIRTNNTEARERLAKAKSLTE 60

Query: 134 QAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKS 193
           Q    +   R +    L   + E Q   + ++   +K+++AE+ +A A LE QK+     
Sbjct: 61  QYEQELAGTRKQSQQVLADAQAEAQKIAQTQITEAQKQVQAEVMKAQAELESQKQSAFSE 120

Query: 194 LDSQIAALSEEIVRKVLP 211
           L+ Q+  LS++I+ K+L 
Sbjct: 121 LEKQVDTLSQQILNKLLG 138

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|B1XHZ1|ATPX_SYNP2 ATP synthase subunit b' OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 79/141 (56%)

Query: 71  KAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQ 130
           +  LFDF+ TLP++ ++FLVL   L+K++Y P+G  +D+R + I+  L   K+  ++ + 
Sbjct: 18  EGGLFDFDATLPVMAIQFLVLAALLNKLFYKPIGQAIDDRSDYIRTNLVDAKERQQKAED 77

Query: 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDT 190
           L  Q    +R  R E    + K + E Q  V  ++   + +  AE ++A   +E Q+E  
Sbjct: 78  LAAQYEQELRDVRREAQDVIAKAQAEAQKVVADEVKSAQAEALAEREKAALEIEAQRESA 137

Query: 191 IKSLDSQIAALSEEIVRKVLP 211
            KSL+ Q+ +LS+ I  K++ 
Sbjct: 138 FKSLEQQVDSLSQAIASKLVG 158

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|Q1XDP2|ATPX_PORYE ATP synthase subunit b', chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 62  PPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSV 121
           P  LA EIE   LFDFN TLP++ ++FL LM  L+ I+Y P+   +DERD  I+  L + 
Sbjct: 5   PFLLAEEIE-GGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTA 63

Query: 122 KD----TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177
                   E   + EE  +   R A+ +I+++    +KE Q  V + +   +   E  + 
Sbjct: 64  SSMLVKADELAAKYEEDLSEARRNAQLKIASS----QKEAQNIVSEDIKKAQLNAEKLIA 119

Query: 178 EALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ 213
           EA   L  QKE+ +K+L++Q+  LS++I  K+L  Q
Sbjct: 120 EASKQLNVQKEEALKTLENQVDTLSDQIKVKLLSSQ 155

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Porphyra yezoensis (taxid: 2788)

>sp|Q6B8R1|ATPX_GRATL ATP synthase subunit b', chloroplastic OS=Gracilaria tenuistipitata var. liui GN=atpG PE=3 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 9/150 (6%)

Query: 65  LAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLN----S 120
           L+ E+E   LFDFN TLP++ ++F++L   L+ I+Y P+ N +DERD  I+  L     S
Sbjct: 12  LSTEVE-GGLFDFNATLPLMALQFIILTTILNFIFYKPVTNVLDERDEYIRNSLTTASAS 70

Query: 121 VKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL 180
           +    E  K  E+Q A   + A+  I  A  + ++   ++++   A G K +     EA 
Sbjct: 71  LVKADELTKTYEQQLAESRKKAQDIIKVAQEQAQQIVSVKIKDAQAYGEKLVS----EAF 126

Query: 181 ANLERQKEDTIKSLDSQIAALSEEIVRKVL 210
             L  QKED +K+L+ Q+  LS+ I  K+L
Sbjct: 127 HQLSIQKEDALKTLEMQVDTLSDLIKSKLL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.

Gracilaria tenuistipitata var. liui (taxid: 285951)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
118485650	220	unknown [Populus trichocarpa]	0.976	0.945	0.751	5e-75
118486525	220	unknown [Populus trichocarpa]	0.990	0.959	0.752	7e-75
449441904	216	PREDICTED: ATP synthase subunit b', chlo	0.882	0.870	0.768	2e-66
224141905	165	predicted protein [Populus trichocarpa]	0.774	1.0	0.872	2e-66
357466171	209	ATP synthase [Medicago truncatula] gi|35	0.967	0.985	0.657	1e-65
255548890	571	hypothetical protein RCOM_0923760 [Ricin	0.967	0.360	0.712	2e-65
224089272	165	predicted protein [Populus trichocarpa]	0.774	1.0	0.854	2e-65
461595	222	RecName: Full=ATP synthase subunit b', c	0.830	0.797	0.728	2e-64
225430312	215	PREDICTED: uncharacterized protein LOC10	0.985	0.976	0.682	2e-63
351722297	215	uncharacterized protein LOC100527009 [Gl	0.985	0.976	0.680	4e-61

>gi|118485650|gb|ABK94675.1| unknown [Populus trichocarpa]

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 189/225 (84%), Gaps = 17/225 (7%)

Query: 1   MASMIVASSNAKPL-----SPLPITSQSPKPRIQIPQIKIPQ-------KLLKLSSSALK 48
           MA+MI+ +S  KPL     S LP  S   KP++QIP++  P+       +LL LS+S LK
Sbjct: 1   MANMIMGTS--KPLITLSSSSLPTNS---KPKLQIPRLSFPKLLKITKPQLLSLSTSTLK 55

Query: 49  SLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMD 108
           SLS +A TSL F+PPSLA EIEKAALFDFNLTLPIIMVEFLVLM ALDKI++SPLGNFMD
Sbjct: 56  SLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNFMD 115

Query: 109 ERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVG 168
           ERD AIKEKL+SVKDTSEEVKQLEEQAAAVMRAARAEISAAL KMKKETQ EVEQKLA G
Sbjct: 116 ERDAAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEG 175

Query: 169 RKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ 213
           RKKIEAELQEALA L+ QKE+TIK+LDSQIAALS+EIV+KVLPVQ
Sbjct: 176 RKKIEAELQEALAKLDTQKEETIKALDSQIAALSDEIVKKVLPVQ 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486525|gb|ABK95102.1| unknown [Populus trichocarpa]

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 167/222 (75%), Positives = 190/222 (85%), Gaps = 11/222 (4%)

Query: 1   MASMIVASSNAKPLSPLPITS--QSPKPRIQIPQIKIPQ-------KLLKLSSSALKSLS 51
           MA+MI+ASS  KPL  L  +S   + KP++QIPQ+  P+       +LL LS+S LKSLS
Sbjct: 1   MANMIMASS--KPLITLSSSSLPTNNKPKLQIPQLSFPKILKITKPQLLSLSTSTLKSLS 58

Query: 52  AVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERD 111
            +A TSL F+PPSLA EIEKAALFDFNLTLPIIMVEFLVLM ALDKI+++PLGNFMDERD
Sbjct: 59  LIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFTPLGNFMDERD 118

Query: 112 NAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKK 171
           +AIKEKL+SVKDTSEEVKQLEEQAAAVMRAARAEISAAL KMKKETQ EVEQKLA GRKK
Sbjct: 119 SAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEGRKK 178

Query: 172 IEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ 213
           IEA+LQEALA LE QKE+T+K+LDSQIAALS+ IV+KVLPVQ
Sbjct: 179 IEADLQEALAKLETQKEETMKALDSQIAALSDGIVKKVLPVQ 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441904|ref|XP_004138722.1| PREDICTED: ATP synthase subunit b', chloroplastic-like [Cucumis sativus] gi|449499259|ref|XP_004160768.1| PREDICTED: ATP synthase subunit b', chloroplastic-like [Cucumis sativus]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 166/190 (87%), Gaps = 2/190 (1%)

Query: 24  PKPRIQIPQ-IKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLP 82
           PK    IPQ +K PQ +  LS+S LKSLS  A TSL+F+PPSLA EIEKAALFDFNLTLP
Sbjct: 28  PKTLTLIPQFLKKPQSI-SLSTSTLKSLSLFAATSLSFAPPSLAEEIEKAALFDFNLTLP 86

Query: 83  IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA 142
           I+M +FL+LM  LDK+Y+SPLG FMDERD AIKEKLNSVKDTSEEVKQL++QAAAVMRAA
Sbjct: 87  IMMAQFLLLMVGLDKLYFSPLGKFMDERDTAIKEKLNSVKDTSEEVKQLDDQAAAVMRAA 146

Query: 143 RAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALS 202
           RAEISAALTKMKKETQ EVE+KLA GRK+I+ ELQEALANLE QK +TIKSLD+QIAALS
Sbjct: 147 RAEISAALTKMKKETQAEVEEKLAEGRKRIDVELQEALANLENQKAETIKSLDAQIAALS 206

Query: 203 EEIVRKVLPV 212
           ++IV+KVLPV
Sbjct: 207 DDIVKKVLPV 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141905|ref|XP_002324301.1| predicted protein [Populus trichocarpa] gi|222865735|gb|EEF02866.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/165 (87%), Positives = 154/165 (93%)

Query: 47  LKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNF 106
           LKSLS +A TSL F+PPSLA EIEKAALFDFNLTLPIIMVEFLVLM ALDKI++SPLGNF
Sbjct: 1   LKSLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNF 60

Query: 107 MDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLA 166
           MDERD AIKEKL+SVKDTSEEVKQLEEQAAAVMRAARAEISAAL KMKKETQ EVEQKLA
Sbjct: 61  MDERDAAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLA 120

Query: 167 VGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211
            GRKKIEAELQEALA L+ QKE+TIK+LDSQIAALS+EIV+KVLP
Sbjct: 121 EGRKKIEAELQEALAKLDTQKEETIKALDSQIAALSDEIVKKVLP 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466171|ref|XP_003603370.1| ATP synthase [Medicago truncatula] gi|355492418|gb|AES73621.1| ATP synthase [Medicago truncatula] gi|388517653|gb|AFK46888.1| unknown [Medicago truncatula]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/213 (65%), Positives = 169/213 (79%), Gaps = 7/213 (3%)

Query: 1   MASMIVASSNAKPLSPLPITSQSPKPRIQIPQIKIPQKLLKLSSSALKSLSAVAVT-SLA 59
           MASMI+ASS  KP+  +P  S    P++   Q   P   LKL  S LKS++  A + S  
Sbjct: 1   MASMIMASS--KPIIRVPTNSLPSTPKLPSLQTITPN--LKLQLSKLKSMTLAATSLSFV 56

Query: 60  FSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLN 119
           F+PPSLA   EKAALFDFNLTLPII+VEFL LMFALDK+Y++PLG FMD RD  I+ KLN
Sbjct: 57  FAPPSLA--FEKAALFDFNLTLPIIVVEFLFLMFALDKLYFTPLGTFMDNRDAEIRGKLN 114

Query: 120 SVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEA 179
           SV +TSEEVK+LEEQA AV+RAARAEI+ AL +MKKETQ EVE+K+A GRKK++AELQEA
Sbjct: 115 SVTNTSEEVKELEEQANAVLRAARAEIAVALNQMKKETQAEVEEKIAEGRKKVDAELQEA 174

Query: 180 LANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212
           LANLE+QKE+T+K+LDSQIAALS++IV KVLPV
Sbjct: 175 LANLEKQKEETVKALDSQIAALSQDIVNKVLPV 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548890|ref|XP_002515501.1| hypothetical protein RCOM_0923760 [Ricinus communis] gi|223545445|gb|EEF46950.1| hypothetical protein RCOM_0923760 [Ricinus communis]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/219 (71%), Positives = 185/219 (84%), Gaps = 13/219 (5%)

Query: 4   MIVASSNAKPLSPLPITSQSP-KPRIQIPQI----KIPQ----KLLKLSSSALKSLSAVA 54
           +I+ASS  KPL  + ++S  P KP++QI Q+    K+P+    +L  LSSS LKS+S +A
Sbjct: 357 VIMASS--KPL--ISLSSGLPTKPKLQISQLAHLTKLPKINKTQLASLSSSTLKSISLLA 412

Query: 55  VTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAI 114
            TS  F+PPSLAAEIEKAALFDFNLTLPI+M +FL+LM ALDKIY+SPLG FMDERD AI
Sbjct: 413 ATSFTFAPPSLAAEIEKAALFDFNLTLPIMMAQFLILMVALDKIYFSPLGKFMDERDAAI 472

Query: 115 KEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEA 174
           KEKL+SVKDTS EVKQLEEQAAAVMRAARAEI+AAL+KMKKETQ E+E++LA  +KKIEA
Sbjct: 473 KEKLSSVKDTSSEVKQLEEQAAAVMRAARAEIAAALSKMKKETQTELEERLAAEKKKIEA 532

Query: 175 ELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPVQ 213
           ELQEAL NLE+QKE+TIKSLDSQIAALS+EIV+KVLP Q
Sbjct: 533 ELQEALGNLEKQKEETIKSLDSQIAALSDEIVKKVLPAQ 571

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089272|ref|XP_002308670.1| predicted protein [Populus trichocarpa] gi|222854646|gb|EEE92193.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/165 (85%), Positives = 154/165 (93%)

Query: 47  LKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNF 106
           LKSLS +A TSL F+PPSLA EIEKAALFDFNLTLPIIMVEFLVLM ALDKI+++PLGNF
Sbjct: 1   LKSLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMVALDKIWFTPLGNF 60

Query: 107 MDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLA 166
           MDERD+AIKEKL+SVKDTSEEVKQLEEQAAAVMRAARAEISAAL KMKKETQ EVEQKLA
Sbjct: 61  MDERDSAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLA 120

Query: 167 VGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211
            GRKKIEA+LQEALA LE QKE+T+K+LDSQIAALS+ IV+KVLP
Sbjct: 121 EGRKKIEADLQEALAKLETQKEETMKALDSQIAALSDGIVKKVLP 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|461595|sp|P31853.2|ATPX_SPIOL RecName: Full=ATP synthase subunit b', chloroplastic; AltName: Full=ATP synthase F(0) sector subunit b'; AltName: Full=ATPase subunit II; Flags: Precursor gi|394755|emb|CAA50520.1| CF(o)II ATP synthase subunit 9 [Spinacia oleracea]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 155/188 (82%), Gaps = 11/188 (5%)

Query: 29  QIPQIKIPQKLLKLSSSALKSLSAVAVTSLAFS----PPSLAAEIEKAALFDFNLTLPII 84
           Q+P +K       L+ S LKS +A+  T L  S     PSLA EIEKA+LFDFNLTLPII
Sbjct: 41  QLPPLK------HLNLSVLKS-AAITATPLTLSFLLPYPSLAEEIEKASLFDFNLTLPII 93

Query: 85  MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARA 144
           M EFL LMFALDKIYY+PLG+FMD+RD +IKE+L+ VKDTS EVKQLEEQA AVMRAARA
Sbjct: 94  MAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARA 153

Query: 145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEE 204
           EISAAL KMKKETQLEVE KLA GRKKIE ELQEAL +LE+QKEDTIKSLDSQI+ALS++
Sbjct: 154 EISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDD 213

Query: 205 IVRKVLPV 212
           IV+KVLPV
Sbjct: 214 IVKKVLPV 221

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430312|ref|XP_002285183.1| PREDICTED: uncharacterized protein LOC100250997 [Vitis vinifera]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/217 (68%), Positives = 176/217 (81%), Gaps = 7/217 (3%)

Query: 1   MASMIVASSNA--KPLSPLPITSQSPKPRIQIPQIKIPQ--KLLKLSSSALKSLSAVAVT 56
           MA+MIVAS+         LP T+ +P+P+  +P I +P+  KLL L S+A   ++A   T
Sbjct: 1   MANMIVASTKTLITSSPSLPPTTTTPRPKFHLPHISLPRLPKLLSLKSAA--LIAATTTT 58

Query: 57  SLAFSP-PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIK 115
           SL+ +P PS+A EIEKAALF+FNLTLPI+M +FL+LM ALDKIYYSPLG FMDER+ AIK
Sbjct: 59  SLSLAPLPSMAEEIEKAALFEFNLTLPIMMAQFLLLMVALDKIYYSPLGKFMDERNAAIK 118

Query: 116 EKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAE 175
           EKLNSVKDTS EVKQLEEQAAAVM+A RAEISAAL +MKKET  EVE KLA GRKK+EAE
Sbjct: 119 EKLNSVKDTSGEVKQLEEQAAAVMKAVRAEISAALNQMKKETAAEVEMKLAEGRKKVEAE 178

Query: 176 LQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212
           LQEALA LE+QKEDTIK+LDSQIAALS++IV KVLP+
Sbjct: 179 LQEALAVLEKQKEDTIKALDSQIAALSQQIVNKVLPL 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722297|ref|NP_001237239.1| uncharacterized protein LOC100527009 [Glycine max] gi|255631358|gb|ACU16046.1| unknown [Glycine max]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 175/216 (81%), Gaps = 6/216 (2%)

Query: 1   MASMIVASSNAKPLSPLPITSQSPKPRIQIPQIKIPQK---LLKLSSSALKSLSAVA-VT 56
           MA+MI+AS+  KPL P+  +S+SP P++ I QI +P+     LKL  S  + LS +  + 
Sbjct: 1   MANMIMAST--KPLVPVCTSSRSPTPKLPILQISLPKAPTLKLKLPISKPQMLSLLGGIA 58

Query: 57  SLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE 116
            L  + PSLA E EKAALFDFNLTLPIIMVEFL+LM ALDKI+++PLG FMDERD AI+E
Sbjct: 59  PLVLARPSLAEEFEKAALFDFNLTLPIIMVEFLLLMVALDKIWFTPLGKFMDERDAAIRE 118

Query: 117 KLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176
           KL+SVKDTSEEVKQLEE+A AVM AARAEI+AAL  MKKETQ EVEQK+A GRKK+EAEL
Sbjct: 119 KLSSVKDTSEEVKQLEEKANAVMAAARAEIAAALNTMKKETQAEVEQKIAEGRKKVEAEL 178

Query: 177 QEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212
           QEAL++LE QKE+TIKSLDSQIAALS+EIV KVLP 
Sbjct: 179 QEALSSLENQKEETIKSLDSQIAALSQEIVNKVLPT 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
TAIR|locus:2116485	219	PDE334 "PIGMENT DEFECTIVE 334"	0.713	0.694	0.651	1.4e-46
UNIPROTKB|P27183	143	atpG "ATP synthase subunit b'"	0.643	0.958	0.233	3.1e-12
TIGR_CMR|BA_5551	168	BA_5551 "ATP synthase F0, B su	0.615	0.779	0.229	5.3e-08
TIGR_CMR|CHY_2549	159	CHY_2549 "ATP synthase F0, B s	0.591	0.792	0.206	2.3e-07
TIGR_CMR|CJE_0097	141	CJE_0097 "ATP synthase F0, B'	0.615	0.929	0.219	3.1e-05

TAIR|locus:2116485 PDE334 "PIGMENT DEFECTIVE 334" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 99/152 (65%), Positives = 115/152 (75%)

Query:    60 FSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLN 119
             F+PPS+A  +EKA LFDFNLTLPII+VEFL LMFALDK+YYSPLGNFMD+RD +IKEKL 
Sbjct:    67 FAPPSMAEAMEKAQLFDFNLTLPIIVVEFLFLMFALDKVYYSPLGNFMDQRDASIKEKLA 126

Query:   120 SVKDTSEEVKQLEEQXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXX 179
             SVKDTS EVK+L+EQ               L KMKKETQ+EVE+KLA GRKK+       
Sbjct:   127 SVKDTSTEVKELDEQAAAVMRAARAEIAAALNKMKKETQVEVEEKLAEGRKKVEEELKEA 186

Query:   180 XXXXXRQKEDTIKSLDSQIAALSEEIVRKVLP 211
                   QKE+TIK+LDSQIAALSE+IV+KVLP
Sbjct:   187 LASLESQKEETIKALDSQIAALSEDIVKKVLP 218

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|P27183 atpG "ATP synthase subunit b'" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/137 (23%), Positives = 68/137 (49%)

Query:    74 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEE 133
             +FDF+ TLP++ ++F+VL F L+ I+Y P+   +DER + I+      ++   + K + +
Sbjct:     1 MFDFDATLPLMALQFVVLAFLLNAIFYKPMNKVLDERADYIRTNEEDARERLAKAKAITQ 60

Query:   134 QXXXXXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKS 193
             +               +   + E +    +K+A  +++              Q++  + S
Sbjct:    61 EYEQQITDARRQSQAVIADAQAEARRLAAEKIAEAQRESQRQKETAAQEIEAQRQSALSS 120

Query:   194 LDSQIAALSEEIVRKVL 210
             L+ ++AALS +I+ K+L
Sbjct:   121 LEQEVAALSNQILHKLL 137

GO:0045260 "plasma membrane proton-transporting ATP synthase complex" evidence=IDA

TIGR_CMR|BA_5551 BA_5551 "ATP synthase F0, B subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 30/131 (22%), Positives = 60/131 (45%)

Query:    80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXX 139
             T+   +  FL+L+  L K  + PL   M ER+  +  ++++ +  + E K+L E+     
Sbjct:    14 TIAYTLFIFLLLLVMLRKFAWGPLMGIMKEREEHVANEIDAAERNNAEAKKLVEEQREML 73

Query:   140 XXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIA 199
                       + + KK+   + +  +A  +++             R+KE  I +L  Q+A
Sbjct:    74 KQSRVEAQELIERAKKQAVDQKDVIVAAAKEEAESIKASAVQEIQREKEQAIAALQEQVA 133

Query:   200 ALSEEIVRKVL 210
             +LS +I  KV+
Sbjct:   134 SLSVQIASKVI 144

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|CHY_2549 CHY_2549 "ATP synthase F0, B subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/126 (20%), Positives = 55/126 (43%)

Query:    85 MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXXXXXXXXX 144
             ++ F VL+F L  + Y P+   +++R  +I+E L       EE ++++ +          
Sbjct:    12 LINFFVLLFILKILLYKPVLKTIEDRKKSIEESLEKAAKAQEEAERIKAEYDGMIAKARE 71

Query:   145 XXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQIAALSEE 204
                  + K +K  Q E E+ +A  +++             ++KE  ++ L  +I  L+  
Sbjct:    72 EAREIIAKAQKTAQAEKEEIIATAQREAQSLLADAKATIAQEKEKALRELRQEIGNLAVL 131

Query:   205 IVRKVL 210
                K+L
Sbjct:   132 AAGKIL 137

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|CJE_0097 CJE_0097 "ATP synthase F0, B' subunit" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 100 (40.3 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 29/132 (21%), Positives = 57/132 (43%)

Query:    78 NLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQXXX 137
             ++ L  I + FL ++  L+ + Y PL  FMDER+++IK   N VK+ S+EV  + ++   
Sbjct:     8 SIMLATIAI-FLAMIVTLNSMLYKPLLKFMDERNDSIKNDENKVKENSQEVLCVNDELEV 66

Query:   138 XXXXXXXXXXXXLTKMKKETQLEVEQKLAVGRKKIXXXXXXXXXXXXRQKEDTIKSLDSQ 197
                                 + E EQ L   ++++             QK++  + L+  
Sbjct:    67 IHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELERKMASFYADLAIQKKELQEHLNIH 126

Query:   198 IAALSEEIVRKV 209
             +  L + +   +
Sbjct:   127 LPELKQALQNNI 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.336    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       147   0.00091  103 3  10 23  0.49    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  519 (55 KB)
  Total size of DFA:  131 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.31u 0.13s 20.44t   Elapsed:  00:00:01
  Total cpu time:  20.31u 0.13s 20.44t   Elapsed:  00:00:01
  Start:  Fri May 10 04:01:23 2013   End:  Fri May 10 04:01:24 2013

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31853	ATPX_SPIOL	No assigned EC number	0.7287	0.8309	0.7972	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1630.1	SubName- Full=Putative uncharacterized protein; (165 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0023015401	SubName- Full=Putative uncharacterized protein; (216 aa)						•			0.899
	fgenesh4_pm.C_LG_II000842	inorganic pyrophosphatase (EC-3.6.1.1) (215 aa)						•			0.899
	fgenesh4_pg.C_LG_VII001101	SubName- Full=Putative uncharacterized protein; (213 aa)						•			0.899
	eugene3.00090843	inorganic pyrophosphatase (EC-3.6.1.1) (298 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XIV0223	SubName- Full=Putative uncharacterized protein; (216 aa)						•			0.899
	estExt_fgenesh4_pg.C_LG_XIII0040	vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)						•			0.899
	estExt_fgenesh4_pg.C_1520062	SubName- Full=Putative uncharacterized protein; (768 aa)						•			0.899
	estExt_fgenesh4_pg.C_1330100	vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_X3050	vacuolar H+-translocating inorganic pyrophosphatase (636 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_I4261	SubName- Full=Putative uncharacterized protein; (296 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	213
CHL00118	156	CHL00118, atpG, ATP synthase CF0 B' subunit; Valid	3e-25
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	2e-24
PRK07353	140	PRK07353, PRK07353, F0F1 ATP synthase subunit B';	2e-20
PRK08476	141	PRK08476, PRK08476, F0F1 ATP synthase subunit B';	7e-14
PRK13453	173	PRK13453, PRK13453, F0F1 ATP synthase subunit B; P	1e-10
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	2e-10
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	4e-09
PRK14473	164	PRK14473, PRK14473, F0F1 ATP synthase subunit B; P	5e-07
PRK14471	164	PRK14471, PRK14471, F0F1 ATP synthase subunit B; P	4e-06
TIGR01144	147	TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b	1e-04
PRK14474	250	PRK14474, PRK14474, F0F1 ATP synthase subunit B; P	1e-04
PRK13461	159	PRK13461, PRK13461, F0F1 ATP synthase subunit B; P	6e-04

>gnl|CDD|214369 CHL00118, atpG, ATP synthase CF0 B' subunit; Validated

 Score = 95.8 bits (239), Expect = 3e-25
 Identities = 54/150 (36%), Positives = 83/150 (55%)

Query: 63  PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVK 122
             + AE     LFDFN TLP++ ++FL+LM  L+ I Y PL   +DER   I++ L    
Sbjct: 7   ILILAEEGAGGLFDFNATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKAS 66

Query: 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALAN 182
           +   +  +L +Q    +  AR E    +T+ +KE +  VE +L   +K I++ L EA   
Sbjct: 67  EILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQ 126

Query: 183 LERQKEDTIKSLDSQIAALSEEIVRKVLPV 212
           LE QKE  +KSL+ Q+  LS++I  K+L  
Sbjct: 127 LEAQKEKALKSLEEQVDTLSDQIEEKLLIK 156

Length = 156

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 93.1 bits (232), Expect = 2e-24
 Identities = 44/131 (33%), Positives = 68/131 (51%)

Query: 80  TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVM 139
           TL   ++ FL+L+  L    Y PLG  +DER   I   +   ++  ++   L  +A   +
Sbjct: 1   TLETNLINFLILVGLLIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQL 60

Query: 140 RAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA 199
             ARAE S  +   KKE Q   E+ LA  +K  E  L+ A A +E++KE  +  L  Q+A
Sbjct: 61  AQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVA 120

Query: 200 ALSEEIVRKVL 210
           AL+ +I  K+L
Sbjct: 121 ALAVQIAEKLL 131

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 42/137 (30%), Positives = 81/137 (59%)

Query: 74  LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEE 133
           LFDF+ TLP++ V+F++L F L+ ++Y P+G  ++ER++ I+      K+   E ++LE 
Sbjct: 1   LFDFDATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEA 60

Query: 134 QAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKS 193
           Q    + +AR +  A + + + E      + LA  + + +A  ++A   +E+QK+  +  
Sbjct: 61  QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQ 120

Query: 194 LDSQIAALSEEIVRKVL 210
           L+ Q+ ALS +I+ K+L
Sbjct: 121 LEQQVDALSRQILEKLL 137

Length = 140

>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated

 Score = 65.9 bits (161), Expect = 7e-14
 Identities = 36/127 (28%), Positives = 65/127 (51%)

Query: 83  IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA 142
              V FL+L+  L+   Y PL  FMD R+ +IK  L  VK  S +V ++E +   +++ A
Sbjct: 12  ATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNA 71

Query: 143 RAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALS 202
           R E +    K   + + E E+K+   + ++E++ +     L  QK++  + L SQ+    
Sbjct: 72  REEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFK 131

Query: 203 EEIVRKV 209
           E +  K+
Sbjct: 132 EALNAKL 138

Length = 141

>gnl|CDD|184060 PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional

 Score = 57.6 bits (139), Expect = 1e-10
 Identities = 32/131 (24%), Positives = 66/131 (50%)

Query: 80  TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVM 139
           T+ + ++ F+VL+  L K  + PL + MD+R+  I   ++  +      ++LEE+    +
Sbjct: 20  TVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKL 79

Query: 140 RAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA 199
           +  + E+   L   K + + + EQ +     +    ++ A + +  QKE  I  +++Q++
Sbjct: 80  KETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVS 139

Query: 200 ALSEEIVRKVL 210
            LS  I  KVL
Sbjct: 140 ELSVLIASKVL 150

Length = 173

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 33/126 (26%), Positives = 65/126 (51%)

Query: 85  MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARA 144
           ++ F++L++ L K  + P+   +DER   I + L   +   EE + L  +    +  AR 
Sbjct: 13  LIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEARE 72

Query: 145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEE 204
           + S  + + KKE +   E+  A   +++E   + A A +E +KE  ++ L +++A L+  
Sbjct: 73  QASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVA 132

Query: 205 IVRKVL 210
           I  K+L
Sbjct: 133 IAEKLL 138

Length = 161

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 31/135 (22%), Positives = 67/135 (49%)

Query: 76  DFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQA 135
           + N TL   ++ FL+L++ + K  + P+   ++ER   I + L + +   +E++  + + 
Sbjct: 2   NLNGTLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKY 61

Query: 136 AAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLD 195
            A +  ARAE +  + + KK     +E+  A    +      +A A +E++++   + L 
Sbjct: 62  EAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELR 121

Query: 196 SQIAALSEEIVRKVL 210
            Q+A L+     K+L
Sbjct: 122 KQVADLAVAGAEKIL 136

Length = 156

>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 33/126 (26%), Positives = 64/126 (50%)

Query: 85  MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARA 144
           ++ FL+L+F L    Y P+ N ++ER   I+E L   +   E++   +    A +  AR 
Sbjct: 15  LINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQ 74

Query: 145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEE 204
           E +  + + ++  + +  + +A  R++ E   +EA A  E++++  +  L SQIA L   
Sbjct: 75  EAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTL 134

Query: 205 IVRKVL 210
              +VL
Sbjct: 135 TASRVL 140

Length = 164

>gnl|CDD|184695 PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 33/123 (26%), Positives = 68/123 (55%)

Query: 88  FLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147
           FL+L+  L K  + P+   + ER+++IK  L S ++  +E++ L+     +++ ARAE  
Sbjct: 18  FLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERD 77

Query: 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVR 207
           A L + ++  +  +       + + +  +++A A++E +K   +  + +Q+A LS EI  
Sbjct: 78  AILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAE 137

Query: 208 KVL 210
           KVL
Sbjct: 138 KVL 140

Length = 164

>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 29/125 (23%), Positives = 59/125 (47%)

Query: 86  VEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAE 145
           + F++L++   K  + PL   ++ R   I + L S +   +E    +++A  +++ A+ E
Sbjct: 3   ISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDE 62

Query: 146 ISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEI 205
               +    K     +E+  A  R++ E    +A A +E +KE   + L  Q+A LS   
Sbjct: 63  AQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLG 122

Query: 206 VRKVL 210
             K++
Sbjct: 123 AEKII 127

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase [Energy metabolism, ATP-proton motive force interconversion]. Length = 147

>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 85  MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQ-----------LEE 133
           ++ FL+L++ L +  Y P+   M +R   I  +    +   +E  Q           LE+
Sbjct: 12  IINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ 71

Query: 134 QAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI 191
           Q A+ M  A+         +  E + +V        +++E E QE    L++Q    +
Sbjct: 72  QRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQM 129

Length = 250

>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 22/136 (16%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 76  DFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQ 134
           + N+ T+   ++ F++L+  L   ++  +   +D R + I  K+    +  ++ ++L+ +
Sbjct: 2   EINIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLK 61

Query: 135 AAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL 194
               ++ A+ E    + + K + +   E+ +    ++ +  ++ A    +R+KE     +
Sbjct: 62  NERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEI 121

Query: 195 DSQIAALSEEIVRKVL 210
            +Q   L+  +  K L
Sbjct: 122 KNQAVDLAVLLSSKAL 137

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	99.98
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	99.97
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	99.97
PRK07352	174	F0F1 ATP synthase subunit B; Validated	99.97
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	99.97
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	99.97
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	99.97
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	99.97
CHL00019	184	atpF ATP synthase CF0 B subunit	99.97
PRK05759	156	F0F1 ATP synthase subunit B; Validated	99.97
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	99.96
PRK06568	154	F0F1 ATP synthase subunit B; Validated	99.96
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	99.96
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	99.96
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	99.96
PRK06231	205	F0F1 ATP synthase subunit B; Validated	99.96
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	99.96
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	99.96
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.96
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	99.95
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	99.95
PRK08475	167	F0F1 ATP synthase subunit B; Validated	99.95
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	99.95
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	99.94
PRK09173	159	F0F1 ATP synthase subunit B; Validated	99.93
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	99.93
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	99.9
PRK07352	174	F0F1 ATP synthase subunit B; Validated	99.23
PRK06568	154	F0F1 ATP synthase subunit B; Validated	99.13
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	99.09
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	99.09
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	99.07
PRK08475	167	F0F1 ATP synthase subunit B; Validated	99.06
CHL00019	184	atpF ATP synthase CF0 B subunit	99.05
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	99.04
PRK06231	205	F0F1 ATP synthase subunit B; Validated	99.03
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	99.02
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	99.02
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	99.02
PRK08404	103	V-type ATP synthase subunit H; Validated	99.02
PRK09173	159	F0F1 ATP synthase subunit B; Validated	99.01
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	99.0
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	99.0
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	98.97
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	98.96
PRK05759	156	F0F1 ATP synthase subunit B; Validated	98.94
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	98.94
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	98.92
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	98.9
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	98.86
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	98.85
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	98.85
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	98.84
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	98.83
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	98.8
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	98.51
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	98.17
PRK08404	103	V-type ATP synthase subunit H; Validated	98.12
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	98.04
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	98.0
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	97.94
PF05405	163	Mt_ATP-synt_B: Mitochondrial ATP synthase B chain	97.92
PRK06328	223	type III secretion system protein; Validated	97.78
PRK03963	198	V-type ATP synthase subunit E; Provisional	97.77
PRK09098	233	type III secretion system protein HrpB; Validated	97.76
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.75
PRK06937	204	type III secretion system protein; Reviewed	97.62
PRK01558	198	V-type ATP synthase subunit E; Provisional	97.58
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	97.54
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	97.46
PRK03963	198	V-type ATP synthase subunit E; Provisional	97.35
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.34
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	97.22
PRK02292	188	V-type ATP synthase subunit E; Provisional	97.18
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	97.14
PRK01194	185	V-type ATP synthase subunit E; Provisional	97.13
PRK06669	281	fliH flagellar assembly protein H; Validated	97.13
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	97.13
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	97.07
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	96.94
PRK01558	198	V-type ATP synthase subunit E; Provisional	96.92
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	96.76
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	96.66
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	96.42
KOG1772	108	consensus Vacuolar H+-ATPase V1 sector, subunit G	96.26
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	96.23
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.16
PF02326	86	YMF19: Plant ATP synthase F0; InterPro: IPR003319	96.06
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	96.06
PRK12704	520	phosphodiesterase; Provisional	96.06
PRK00409	782	recombination and DNA strand exchange inhibitor pr	96.02
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	95.98
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	95.83
PRK09098	233	type III secretion system protein HrpB; Validated	95.83
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	95.81
PRK00106	535	hypothetical protein; Provisional	95.65
MTH00169	67	ATP8 ATP synthase F0 subunit 8; Provisional	95.43
PRK12705	508	hypothetical protein; Provisional	95.41
PRK02292	188	V-type ATP synthase subunit E; Provisional	95.4
PRK01194	185	V-type ATP synthase subunit E; Provisional	95.27
MTH00025	70	ATP8 ATP synthase F0 subunit 8; Validated	94.97
PRK06669	281	fliH flagellar assembly protein H; Validated	94.84
PRK00106	535	hypothetical protein; Provisional	94.82
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	94.65
KOG1772	108	consensus Vacuolar H+-ATPase V1 sector, subunit G	94.35
KOG3976	247	consensus Mitochondrial F1F0-ATP synthase, subunit	94.24
PRK00409	782	recombination and DNA strand exchange inhibitor pr	94.13
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	93.8
PRK15322	210	invasion protein OrgB; Provisional	93.68
PF06936	190	Selenoprotein_S: Selenoprotein S (SelS); InterPro:	93.27
PRK06328	223	type III secretion system protein; Validated	93.24
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	92.76
PRK12705	508	hypothetical protein; Provisional	92.35
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	92.25
PRK04654	214	sec-independent translocase; Provisional	91.7
PRK06397	111	V-type ATP synthase subunit H; Validated	91.03
PRK00247	429	putative inner membrane protein translocase compon	90.64
PF04120	132	Iron_permease: Low affinity iron permease ; InterP	90.41
PF06936	190	Selenoprotein_S: Selenoprotein S (SelS); InterPro:	90.27
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	90.22
KOG1962	216	consensus B-cell receptor-associated protein and r	89.86
PRK15354	224	type III secretion system protein SsaK; Provisiona	89.08
PRK11637	428	AmiB activator; Provisional	88.56
COG4741	175	Predicted secreted endonuclease distantly related	87.93
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	87.24
COG1970	130	MscL Large-conductance mechanosensitive channel [C	86.51
PRK04098	158	sec-independent translocase; Provisional	86.39
COG3599	212	DivIVA Cell division initiation protein [Cell divi	86.2
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.08
PRK09039	343	hypothetical protein; Validated	85.69
PF01741	128	MscL: Large-conductance mechanosensitive channel,	85.48
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	85.33
PRK15322	210	invasion protein OrgB; Provisional	84.9
PRK06032	199	fliH flagellar assembly protein H; Validated	84.85
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	84.4
PRK01919	169	tatB sec-independent translocase; Provisional	84.11
PRK10930	419	FtsH protease regulator HflK; Provisional	83.57
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	82.75
COG3599	212	DivIVA Cell division initiation protein [Cell divi	82.27
PRK00888	105	ftsB cell division protein FtsB; Reviewed	82.16
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	81.64
PRK09731	178	putative general secretion pathway protein YghD; P	80.15
COG5521	275	Predicted integral membrane protein [Function unkn	80.03

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=99.98  E-value=1.1e-30  Score=211.73  Aligned_cols=142  Identities=37%  Similarity=0.551  Sum_probs=139.5

Q ss_pred             hcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           71 KAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL  150 (213)
Q Consensus        71 ~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii  150 (213)
                      .||+|+||+|++|+++||++|+|+|++|+|+|+.++|++|++.|.+++++|++.+.+++..+++|+.++.+|+.++.+|+
T Consensus        15 ~~~~~~~n~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii   94 (156)
T CHL00118         15 AGGLFDFNATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI   94 (156)
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          151 TKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       151 ~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      ++++.+++.+++++++++++++++++++++.+|+.++.++..+|++++.++|.++++|||+.
T Consensus        95 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~kil~~  156 (156)
T CHL00118         95 TQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKLLIK  156 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999974

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=99.97  E-value=4.3e-30  Score=203.85  Aligned_cols=139  Identities=30%  Similarity=0.557  Sum_probs=137.6

Q ss_pred             cCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           74 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus        74 l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      ||+||+|++|++|||++|+|+|++|+|+||.++|++|++.|.++++++++.+.++++.+.+|+..+.+|+.++.+|++++
T Consensus         1 ~~~~~~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a   80 (140)
T PRK07353          1 LFDFDATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA   80 (140)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +.+++.+++++++++++++++++++++.+|+.++.++..+|++++.++|.++++||||+
T Consensus        81 ~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kll~~  139 (140)
T PRK07353         81 EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKLLAA  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999986

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=99.97  E-value=1.4e-29  Score=209.99  Aligned_cols=150  Identities=19%  Similarity=0.274  Sum_probs=142.0

Q ss_pred             cCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           60 FSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYS-PLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAV  138 (213)
Q Consensus        60 ~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~k-pI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~  138 (213)
                      .+++++++   +||+|+||+|.||++|||+||+|+|++|+|+ ||.++|++|++.|.+++++|++.++++++.+++|+.+
T Consensus        11 ~~~~~~~~---~g~~~~~~~t~~~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~   87 (184)
T PRK13455         11 AASPALAA---GGPFFSLSNTDFVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERK   87 (184)
T ss_pred             ccchHhhc---CCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455553   5889999999999999999999999999765 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          139 MRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       139 L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +.+|+.++++|+++++.+++.+.++++++++.++++++++++.+|+.+++++.++++.++.++|+++++|+|++
T Consensus        88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~  161 (184)
T PRK13455         88 QREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAK  161 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=99.97  E-value=2e-29  Score=207.38  Aligned_cols=148  Identities=21%  Similarity=0.214  Sum_probs=141.3

Q ss_pred             hhhhhhhhhcccCCccch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           63 PSLAAEIEKAALFDFNLT-LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRA  141 (213)
Q Consensus        63 ~a~A~e~~~g~l~~~n~t-l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~  141 (213)
                      .++|+|  +||+|++||+ ++|++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++.+++|+.+|.+
T Consensus         5 ~~~~~~--~~~~~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~   82 (174)
T PRK07352          5 LLLATE--AEGGFGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQ   82 (174)
T ss_pred             HHHHHh--ccCCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345655  5888999986 5579999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          142 ARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       142 Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      |+.++++|+++++.+++.++++++++|++++++++++++.+|+.++.++..+|+.++.++|+++++|+|++
T Consensus        83 a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~kil~~  153 (174)
T PRK07352         83 AQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPG  153 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999975

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=99.97  E-value=1.7e-29  Score=207.80  Aligned_cols=142  Identities=23%  Similarity=0.339  Sum_probs=138.8

Q ss_pred             hcccCCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           71 KAALFDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA  149 (213)
Q Consensus        71 ~g~l~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I  149 (213)
                      +.++|+||| ++||++|||+||+|+|++|+|+||.++|++|+++|.+++++|++.+.++++.+++|+.++.+++.++.+|
T Consensus         8 ~~~~l~~~~~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i   87 (173)
T PRK13460          8 GLSLLDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAI   87 (173)
T ss_pred             CCCccCCcHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999997 7889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +++++.+++.++++++++|++++++++++++.+|+.+++++..+|+.++.++|+++++|+|++
T Consensus        88 i~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~  150 (173)
T PRK13460         88 VAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEK  150 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999975

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=99.97  E-value=2.3e-29  Score=207.29  Aligned_cols=142  Identities=16%  Similarity=0.290  Sum_probs=138.6

Q ss_pred             hcccCCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           71 KAALFDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA  149 (213)
Q Consensus        71 ~g~l~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I  149 (213)
                      .||+|++|| ++||++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++.+++|+.++.+++.++++|
T Consensus        10 ~~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~i   89 (175)
T PRK14472         10 SGGLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKI   89 (175)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999997 6779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +++++.+++.++++++++|+.+++++++.++.+|+.+++++..+|++++.++|+++++|+|++
T Consensus        90 i~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~  152 (175)
T PRK14472         90 IREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRT  152 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999975

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=99.97  E-value=3.5e-29  Score=203.97  Aligned_cols=140  Identities=26%  Similarity=0.404  Sum_probs=136.4

Q ss_pred             ccCCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           73 ALFDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALT  151 (213)
Q Consensus        73 ~l~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~  151 (213)
                      ++|++|| +++|++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.++++++.+.+|+..+.+|+.+++.|++
T Consensus         2 ~~~~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~   81 (164)
T PRK14473          2 EKLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA   81 (164)
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789996 567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +++.+++.++++++++|+.+++++++.++.+|+.++..+..+|++++.++|+.+++|+|++
T Consensus        82 ~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~  142 (164)
T PRK14473         82 QAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGA  142 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999986

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=99.97  E-value=4.8e-29  Score=202.22  Aligned_cols=138  Identities=16%  Similarity=0.340  Sum_probs=135.5

Q ss_pred             CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus        75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      |++|| |++|++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++.+++|+..+.+|+.++.+|++++
T Consensus         1 M~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a   80 (159)
T PRK13461          1 MEINIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEY   80 (159)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67887 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +.+++.++++++++|+.++++++++++.+|+.++.++..+|++++.++|+.+++|+|++
T Consensus        81 ~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~  139 (159)
T PRK13461         81 KSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEE  139 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999985

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=99.97  E-value=9.7e-29  Score=205.12  Aligned_cols=143  Identities=18%  Similarity=0.196  Sum_probs=138.8

Q ss_pred             hhcccCCccchHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           70 EKAALFDFNLTLPI-IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        70 ~~g~l~~~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      +.||+||||+++++ ++|||+||+|+|+||+|+||.++|++|++.|.+++++|++.+.++++.+.+|+.++.+|+.++++
T Consensus        15 ~~~~~f~~n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~   94 (184)
T CHL00019         15 PSAGSFGFNTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADE   94 (184)
T ss_pred             cccCccCCcchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45779999998775 79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      |+++++.+++.++++++++|+.++++++++|+.+|+.++.++..++++++.++|+++|+|+|++
T Consensus        95 ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~  158 (184)
T CHL00019         95 IRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNS  158 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999975

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=99.97  E-value=1.3e-28  Score=198.41  Aligned_cols=138  Identities=22%  Similarity=0.328  Sum_probs=136.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK  154 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak  154 (213)
                      |+||+|+||++|||+||+|+|++|+|+||.++|++|++.|.+.++++++.+.++++.+++|+.++.+|+.++.+|+++++
T Consensus         1 ~~~~~~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~   80 (156)
T PRK05759          1 MNLNGTLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAK   80 (156)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          155 KETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       155 ~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      .+++.++++++.+++.+++++++.++.+|+.++..+..++++++.++|+.+++|+|++
T Consensus        81 ~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~  138 (156)
T PRK05759         81 KRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGR  138 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999985

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=99.96  E-value=2e-28  Score=203.04  Aligned_cols=145  Identities=16%  Similarity=0.296  Sum_probs=139.1

Q ss_pred             hhhhcccCCccc-----hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           68 EIEKAALFDFNL-----TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA  142 (213)
Q Consensus        68 e~~~g~l~~~n~-----tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~A  142 (213)
                      +++.|||++||+     ++||++|+|+||+|+|+||+||||.++|++|++.|.++++++++.+.++++++++|+..|.++
T Consensus        16 ~~~~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~A   95 (181)
T PRK13454         16 AASAPGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADA   95 (181)
T ss_pred             ccCCCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788988887     466889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          143 RAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       143 r~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      |.++.+|+++++.+++.+.++++++++.++++++++++.+|+.++.++.++|++.+.++|..+++||+++
T Consensus        96 r~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL~~~  165 (181)
T PRK13454         96 RAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGGK  165 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999763

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=99.96  E-value=4.2e-28  Score=196.11  Aligned_cols=136  Identities=16%  Similarity=0.196  Sum_probs=132.2

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK  154 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak  154 (213)
                      |+|.-++||++|+|+||+|+|++|+|+||.++|++|.+.|.+++++|++.++++++++++|+..|.+|+.++++|+++|+
T Consensus         1 ~~~~~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~   80 (154)
T PRK06568          1 MNFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESN   80 (154)
T ss_pred             CCchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133          155 KETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL  210 (213)
Q Consensus       155 ~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL  210 (213)
                      .+++...++++.+++.++++++++|+.+|++++.++..+|+++++++|+.+++|..
T Consensus        81 ~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~  136 (154)
T PRK06568         81 EVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYF  136 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999864

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=99.96  E-value=3.5e-28  Score=198.12  Aligned_cols=138  Identities=24%  Similarity=0.381  Sum_probs=133.7

Q ss_pred             CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus        75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      +++|| ++||++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++..++|+..+.+|+.++++|++++
T Consensus         4 l~~~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A   83 (164)
T PRK14471          4 LTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA   83 (164)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +.+++..+++++++|+.++++++++++.+|+.++.++..+|++++.++|+.+++|+|++
T Consensus        84 ~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~kil~~  142 (164)
T PRK14471         84 REIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVLRK  142 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999975

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=99.96  E-value=3.7e-28  Score=199.93  Aligned_cols=137  Identities=23%  Similarity=0.409  Sum_probs=133.5

Q ss_pred             Cccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK  154 (213)
Q Consensus        76 ~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak  154 (213)
                      ++|| |+||++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+++++..+++|+.++.+++.++++|+++++
T Consensus        15 ~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~   94 (173)
T PRK13453         15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAK   94 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455 788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          155 KETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       155 ~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      .+++.++++++++|+.++++++++++.+|+.++.++..+|++++.++|+.+++|+|++
T Consensus        95 ~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~  152 (173)
T PRK13453         95 VQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRK  152 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999975

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=99.96  E-value=1.4e-27  Score=201.45  Aligned_cols=134  Identities=16%  Similarity=0.249  Sum_probs=131.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      +++||++|+|+||||+|+||+||||.++|++|+++|.++++++++.+.++++++++|+..|.+||.++++|+++++.+++
T Consensus        54 ~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~  133 (204)
T PRK09174         54 SQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAK  133 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      .+.++++.+++.++++++++++.+|+.++.++..+|++.+.++|..+++|+|+.
T Consensus       134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~  187 (204)
T PRK09174        134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGG  187 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999999999999999999985

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=99.96  E-value=2.6e-27  Score=199.92  Aligned_cols=141  Identities=14%  Similarity=0.229  Sum_probs=134.8

Q ss_pred             cccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           72 AALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALT  151 (213)
Q Consensus        72 g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~  151 (213)
                      +++|+-.|+++|++|||+||+|+|++|+|+|+.++|++|++.|.+++++|++.++++++.+++|+.++.+|+.++++|++
T Consensus        42 ~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~  121 (205)
T PRK06231         42 NELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID  121 (205)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444345788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +++.+++.++++++++|+.++++++++++.+|+.+++++..+|++++.++|+++++|+|++
T Consensus       122 ~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k  182 (205)
T PRK06231        122 QANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKK  182 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999975

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=99.96  E-value=6.5e-27  Score=186.88  Aligned_cols=137  Identities=28%  Similarity=0.448  Sum_probs=133.4

Q ss_pred             cCCccch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           74 LFDFNLT-LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTK  152 (213)
Q Consensus        74 l~~~n~t-l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~  152 (213)
                      |+++||+ ++|++|||+||+|+|++|+||||.++|++|++.|.+++++|++.+++++...++|+..+.+||.++..++++
T Consensus         2 mi~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~   81 (141)
T PRK08476          2 MLDVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQK   81 (141)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789975 688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133          153 MKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL  210 (213)
Q Consensus       153 Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL  210 (213)
                      ++.+|+.+.++++++++.+++++++.+..+++.++.++..+|+.++.+++.++..|+-
T Consensus        82 a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~~~~  139 (141)
T PRK08476         82 AIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNAKLS  139 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999874

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=99.96  E-value=3.4e-27  Score=204.68  Aligned_cols=138  Identities=20%  Similarity=0.343  Sum_probs=134.6

Q ss_pred             CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus        75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      |.+|| |++|++|||+||+|+|++|+|+||.++|++|+++|.+.+++|++.+.++++.+++|+.++.+++.++++|++++
T Consensus         1 M~id~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A   80 (250)
T PRK14474          1 MLIDWFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA   80 (250)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56775 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +.+++.++++++++|++++++++++++.+++.+++++..+|++++.++++++++|+|++
T Consensus        81 ~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~  139 (250)
T PRK14474         81 QEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALAD  139 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999975

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.96  E-value=3.8e-27  Score=203.71  Aligned_cols=138  Identities=23%  Similarity=0.305  Sum_probs=135.0

Q ss_pred             CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus        75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      |++|| |++|++|||+||+|+|++|+|+||.++|++|++.|.+.+++|++.+.++++.+++|+.++.+|+.++.+|++++
T Consensus         1 M~id~~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A   80 (246)
T TIGR03321         1 MLIDWFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKA   80 (246)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57886 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +.+++.++++++++|+.++++++++++.+|+.++.++..++++++.++|+++|+|+|++
T Consensus        81 ~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~  139 (246)
T TIGR03321        81 KEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTD  139 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999975

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=99.95  E-value=1e-26  Score=190.37  Aligned_cols=140  Identities=15%  Similarity=0.183  Sum_probs=135.2

Q ss_pred             ccCCccchHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           73 ALFDFNLTLPIIMVEFLVLMFAL--DKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL  150 (213)
Q Consensus        73 ~l~~~n~tl~~~lInFlIL~~iL--~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii  150 (213)
                      ..|+++.++||++|||+|++++|  .+|+|+||.++|++|++.|.+++++|++.+.++++.+.+|+..|.+|+.++.+|+
T Consensus         3 ~~~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii   82 (167)
T PRK14475          3 SFFNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAML   82 (167)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778889999999999999977  5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          151 TKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       151 ~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      ++++.+++.+.++++++++++++++++.|+.+|+.++.++..++++++.++|+++|+|+|++
T Consensus        83 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~  144 (167)
T PRK14475         83 AAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAA  144 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999975

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=99.95  E-value=1.6e-26  Score=188.39  Aligned_cols=139  Identities=26%  Similarity=0.388  Sum_probs=135.4

Q ss_pred             cCCccch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           74 LFDFNLT-LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTK  152 (213)
Q Consensus        74 l~~~n~t-l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~  152 (213)
                      +|+++++ +||++++|++|+|++++|+|||+.++|++|+++|.+++++|++.+.+++.+.++|++.+.+||.+++.|+++
T Consensus         1 ~~~~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~   80 (161)
T COG0711           1 GMNFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQ   80 (161)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677888 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          153 MKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       153 Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      |+.+++...++++.+++.+.++++..+..+|+.++.++..+|+.++.++++.+++++++.
T Consensus        81 A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~  140 (161)
T COG0711          81 AKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGK  140 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998863

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=99.95  E-value=4.4e-26  Score=186.81  Aligned_cols=131  Identities=18%  Similarity=0.203  Sum_probs=126.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      |++||++|||+||+|+|++|+|+||.++|++|++.|.++++++++.+.++++.+++|++++.+|+.++++|+++++.+++
T Consensus        23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe  102 (167)
T PRK08475         23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY  102 (167)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133          159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP  211 (213)
Q Consensus       159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~  211 (213)
                      .++++++++++.+++++++.++.+++.+++++..++++++.+-+.+-  ++++
T Consensus       103 ~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~~~--~~~~  153 (167)
T PRK08475        103 ILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELFES--KKVS  153 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcC
Confidence            99999999999999999999999999999999999999999988776  5543

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.95  E-value=1.1e-26  Score=181.50  Aligned_cols=132  Identities=33%  Similarity=0.507  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQL  159 (213)
Q Consensus        80 tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~  159 (213)
                      |+||++|||+||+|+|++|+|||+.++|++|++.|.+.++++++.+.++++...+|+..+.+++.++.+++++++.+++.
T Consensus         1 tl~~~~i~Flil~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~   80 (132)
T PF00430_consen    1 TLFWQLINFLILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEK   80 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133          160 EVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP  211 (213)
Q Consensus       160 e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~  211 (213)
                      +.++++.++++++++++.++..+|+.++.++..++++++.++|+++++|+|+
T Consensus        81 ~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~kll~  132 (132)
T PF00430_consen   81 EKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDLAVDIAEKLLN  132 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=99.94  E-value=1.9e-25  Score=178.56  Aligned_cols=129  Identities=22%  Similarity=0.331  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           84 IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQ  163 (213)
Q Consensus        84 ~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~  163 (213)
                      ++|||+||+|+|++|+|+||.++|++|++.|.++++++++.+.++++.+++|+..+.+|+.++.+|+++++.+++...++
T Consensus         1 q~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~   80 (147)
T TIGR01144         1 QLISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEE   80 (147)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          164 KLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       164 il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      ++++++.+++++++.++.+|+.++..+..+|+.++.++|+.+++|+|++
T Consensus        81 ~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~  129 (147)
T TIGR01144        81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIER  129 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=99.93  E-value=4.6e-24  Score=173.02  Aligned_cols=133  Identities=15%  Similarity=0.184  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           80 TLPIIMVEFLVLMFALDKIYY-SPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus        80 tl~~~lInFlIL~~iL~kfl~-kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      .+||++|+|++|+|+|++|.| +||.++|++|++.|.+++++|++.+.++++.+.+|+..+.+|+.++++|+++++.+++
T Consensus         3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~   82 (159)
T PRK09173          3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE   82 (159)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999955 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      ...+++..++++++++++..++.+|+.++.++..++++++.++|+++++|+|++
T Consensus        83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~~  136 (159)
T PRK09173         83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLAE  136 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999986

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=99.93  E-value=1.9e-24  Score=201.05  Aligned_cols=134  Identities=13%  Similarity=0.221  Sum_probs=132.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      ||++|++|||+||+|+|+||+|+||.++|++|++.|.+++++|++.+.++++++++|++.+++|+.++++|+++++.+++
T Consensus         2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~   81 (445)
T PRK13428          2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE   81 (445)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      .++++++++|++++++++++++.+|+.+++++..+++.++.++|++.++|+|++
T Consensus        82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~  135 (445)
T PRK13428         82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRN  135 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999974

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=99.90  E-value=1.1e-21  Score=158.63  Aligned_cols=134  Identities=13%  Similarity=0.179  Sum_probs=130.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      .++||++|+|+||||++++|+||||.++|++|++.|.+++++|++.+++++++.++|++++.+||.++++|..+++..+.
T Consensus        11 sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~   90 (155)
T PRK06569         11 SQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE   90 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      .+.+.-....++++...+.+-..++....+..+.+..+++.+++++|++|++|+
T Consensus        91 a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~k~~~~  144 (155)
T PRK06569         91 SEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKIAGT  144 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999999999999999999985

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=99.23  E-value=1.9e-09  Score=88.74  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=104.6

Q ss_pred             hhhhhhhhhcccCC-ccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 028133           63 PSLAAEIEKAALFD-FNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQ  134 (213)
Q Consensus        63 ~a~A~e~~~g~l~~-~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~e  134 (213)
                      .+-+++. -|.-++ |-|+++|++|.|++|+|++|+++-+-+.+   .+.+--+..++...++    .+++..+.+.+.+
T Consensus         8 ~~~~~~~-~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~e   86 (174)
T PRK07352          8 ATEAEGG-FGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQE   86 (174)
T ss_pred             HHhccCC-CCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3454542 355455 55789999999999999999999877754   3333333444444444    4677778899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          135 AAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS  196 (213)
Q Consensus       135 ae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~  196 (213)
                      +...+.+++.+++.++++...+++.+.++++..++.+++.+++.+..+++.+.....-++-.
T Consensus        87 a~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~  148 (174)
T PRK07352         87 AERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAE  148 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998887655444444

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=99.13  E-value=1.2e-08  Score=82.83  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=102.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           77 FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE-------KLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA  149 (213)
Q Consensus        77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~-------~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I  149 (213)
                      +-|+++.++|.|+||..++|+.+.+-+.+--+.-++.+.+       ...--++++..+.+.+.++..++++|+.+++.+
T Consensus         7 ~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~   86 (154)
T PRK06568          7 SFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKI   86 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588999999999999999999998876544444444433       233334677888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +++++.+++.+.+++++.|+.+++.+++.|..+++.+.....-++-++-
T Consensus        87 ~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~  135 (154)
T PRK06568         87 IQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEY  135 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887766665544

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=99.09  E-value=2e-08  Score=82.71  Aligned_cols=125  Identities=11%  Similarity=0.165  Sum_probs=103.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN-------FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~-------~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      +.+-|+++.++|.|++|.+++|+.+.+-+.+       -+++-++.-.+....-++++.++.+++.++..++.+++.++.
T Consensus        19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~   98 (173)
T PRK13453         19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQAR   98 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566899999999999999999999877654       333333333334444457888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA  199 (213)
Q Consensus       148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~  199 (213)
                      .+.++...+++.+.++++.+++.+++.+.+.+..+++.+.....-++-+++.
T Consensus        99 ~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll  150 (173)
T PRK13453         99 QQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVL  150 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998877666655553

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=99.09  E-value=2.1e-08  Score=82.51  Aligned_cols=123  Identities=22%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      .+-|+++.++|.+++|.+++|+.+.+-+.+   .+.+--+..++...++    .+++..+.+.+.++..++.+|+.++..
T Consensus        18 ~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~   97 (173)
T PRK13460         18 LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALK   97 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345888889999999999999998877654   3333333444444444    467788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +.++...+++.+.+++++.++.+++.+.+++..+++.+.....-++-+++
T Consensus        98 ~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~ki  147 (173)
T PRK13460         98 LKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKV  147 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988876655544443

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=99.07  E-value=3.5e-08  Score=79.88  Aligned_cols=124  Identities=17%  Similarity=0.238  Sum_probs=102.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      .++-|+++.++|.+++|..++|+.+.+-+.+   .+.+.-+..++...+++    +++..+.+.+.++...+.+++.+++
T Consensus        23 ~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~  102 (156)
T CHL00118         23 ATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAK  102 (156)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566888889999999999999998776653   44444444444444444    6777788888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      .+.++...+++.+.++++++++.+++.+++.+..+++.+......++-+++
T Consensus       103 ~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~ki  153 (156)
T CHL00118        103 EIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKL  153 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999888777766655

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=99.06  E-value=2.2e-08  Score=82.11  Aligned_cols=127  Identities=17%  Similarity=0.196  Sum_probs=100.2

Q ss_pred             hhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 028133           63 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNF---MDERDNAIKEKLNSV----KDTSEEVKQLEEQA  135 (213)
Q Consensus        63 ~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~---Ld~R~~~I~~~l~eA----e~~~~ea~~~~~ea  135 (213)
                      +|+|++++++...++-|+++.++|.+++|.+++|+.+.+-+.+.   +.+--+..++...++    +++++.+.+++.++
T Consensus        11 ~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA   90 (167)
T PRK08475         11 YAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKA   90 (167)
T ss_pred             HHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554322222366889988899999999999999998877653   333333333344444    46777788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          136 AAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED  189 (213)
Q Consensus       136 e~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~  189 (213)
                      ..++.+|+.+++.+.++...+++.+.++++..++.+++.++.++..++.++.-.
T Consensus        91 ~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~  144 (167)
T PRK08475         91 ELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLN  144 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999777653

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=99.05  E-value=5e-08  Score=80.97  Aligned_cols=119  Identities=15%  Similarity=0.106  Sum_probs=97.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEISAALT  151 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~  151 (213)
                      ++++.++|.|++|++|+|+++.+-+.+   .+.+.-+..++...+++    +++..+.+++.++...+.+|+.+++.+.+
T Consensus        29 ~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~  108 (184)
T CHL00019         29 TNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKE  108 (184)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999887754   44444444444444444    66777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ  197 (213)
Q Consensus       152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e  197 (213)
                      +...+++.+.++++++++.+++.+++.+..+++.+.....-+.-++
T Consensus       109 ~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~k  154 (184)
T CHL00019        109 NLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALG  154 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877654444333

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=99.04  E-value=8.9e-09  Score=75.44  Aligned_cols=83  Identities=22%  Similarity=0.294  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          127 EVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV  206 (213)
Q Consensus       127 ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia  206 (213)
                      .+.....+|+..+.+|+.++.+|+.+|+.+++..+++++.+|+.+.++++..|+.+++.++..+..+++.++.+|++...
T Consensus         3 ~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~~~~~   82 (85)
T TIGR02926         3 EIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAK   82 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhh
Q 028133          207 RKV  209 (213)
Q Consensus       207 ~Ki  209 (213)
                      +++
T Consensus        83 ~~~   85 (85)
T TIGR02926        83 EKI   85 (85)
T ss_pred             hcC
Confidence            764

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=99.03  E-value=4.7e-08  Score=82.74  Aligned_cols=126  Identities=16%  Similarity=0.176  Sum_probs=103.7

Q ss_pred             cccCCccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 028133           72 AALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARA  144 (213)
Q Consensus        72 g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~  144 (213)
                      +..+.|-|+++.++|.+++|.+++|+.+.+-+.+   .+.+.-+..++...+++    +++..+.+++.++..++.+|+.
T Consensus        46 ~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~  125 (205)
T PRK06231         46 PNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY  125 (205)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345677899999999999999999998887754   45555555555555554    6777888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ  197 (213)
Q Consensus       145 ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e  197 (213)
                      ++..+.+++..+|+.+.++++.+++.+++.+++++..+++.+.....-+.-+.
T Consensus       126 eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~k  178 (205)
T PRK06231        126 EALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEE  178 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988877655444443

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=99.02  E-value=6.6e-08  Score=78.32  Aligned_cols=123  Identities=14%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGNF---MDERDNAIKEK----LNSVKDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~---Ld~R~~~I~~~----l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      +|-|+++.++|.|++|.+++|+.+.+-+.+-   +.+--+..++.    ...-++++.++.+++.++..++.+|+.++..
T Consensus         7 ~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~   86 (159)
T PRK13461          7 TIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAEN   86 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4558888899999999999999988877542   33333333333    3334467788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +.++...+++.+.++++.+++.+++.++..+..+++.+.....-++-+++
T Consensus        87 ~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~ki  136 (159)
T PRK13461         87 VYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKA  136 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988876655554444

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=99.02  E-value=7.6e-08  Score=79.23  Aligned_cols=122  Identities=17%  Similarity=0.198  Sum_probs=98.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           77 FNLTLPIIMVEFLVLMFALDKIYYSPLGN-------FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA  149 (213)
Q Consensus        77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~-------~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I  149 (213)
                      +-|+++.++|.+++|.+++|+.+.+-+.+       .+++-++.-.+....-++++.++.+++.++..++.+|+.++..+
T Consensus        21 ~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~  100 (175)
T PRK14472         21 IFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL  100 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44888899999999999999998877654       33333333333333334688888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      .++...+|+.+.+++++.++.+++.+.+.+..+++.+.....-++-.++
T Consensus       101 ~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~ki  149 (175)
T PRK14472        101 RAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKI  149 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888876655544444

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=99.02  E-value=9.1e-08  Score=78.32  Aligned_cols=123  Identities=20%  Similarity=0.238  Sum_probs=97.4

Q ss_pred             ccchHHHHHHHHHHH--HHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           77 FNLTLPIIMVEFLVL--MFALDKIYYSPLGNF-------MDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        77 ~n~tl~~~lInFlIL--~~iL~kfl~kpI~~~-------Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      +-|++++++|+|+||  ..++|+++..-+.+-       +++-++.-.+....-.+++..+.+++.++..++.+|+.+++
T Consensus        11 ~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~   90 (167)
T PRK14475         11 EFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADAR   90 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458888888888877  578888887766543       33333322233333347788888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA  199 (213)
Q Consensus       148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~  199 (213)
                      .+.+++..+++.+.+++++.|+.+++.++..+..+++.+.....-+.-+++.
T Consensus        91 ~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil  142 (167)
T PRK14475         91 RMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVL  142 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998876655555544

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=99.02  E-value=1.9e-08  Score=76.43  Aligned_cols=86  Identities=14%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE  203 (213)
Q Consensus       124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~  203 (213)
                      .-..+.+...+|+..|.+|+.++..|+++|+.+++.++++++.+|+.+++++++.|+.+++.++..+..+++.++.+|+.
T Consensus         4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~   83 (103)
T PRK08404          4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV   83 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhh
Q 028133          204 EIVRKV  209 (213)
Q Consensus       204 ~ia~Ki  209 (213)
                      ..-.|+
T Consensus        84 ~a~~k~   89 (103)
T PRK08404         84 KAEENF   89 (103)
T ss_pred             HHHHHH
Confidence            765553

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=99.01  E-value=1.2e-07  Score=76.88  Aligned_cols=124  Identities=13%  Similarity=0.142  Sum_probs=93.0

Q ss_pred             CccchHHHHHHHHHHHHHHHH-HHHhhHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALD-KIYYSPLGN---FMDERDNAIKEK----LNSVKDTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~-kfl~kpI~~---~Ld~R~~~I~~~----l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      ++-|+++.+++.|++|+++.+ +.+.+-+.+   .+.+.-+..+..    ...-.+++.++.+.+.++..++.+|+.++.
T Consensus         3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~   82 (159)
T PRK09173          3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE   82 (159)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666666666666666645 566555433   333333333333    334457888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA  199 (213)
Q Consensus       148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~  199 (213)
                      .++++++.+++.+.++++..++.+++.++.++..++..+.....-+.-+++.
T Consensus        83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil  134 (159)
T PRK09173         83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLL  134 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988776655555443

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=99.00  E-value=1.1e-07  Score=77.50  Aligned_cols=123  Identities=16%  Similarity=0.223  Sum_probs=100.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      .|-|+++.++|.|++|.+++|+.+.+-+.+   .+.+--+..++...+++    ++...+.+++.++..++.+|+.+++.
T Consensus        10 ~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~   89 (164)
T PRK14471         10 LFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEK   89 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345888999999999999999999887764   33333333444444443    56677788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +++++..+++.+.++++++++.+++.+++.+..+++.+.....-++-+++
T Consensus        90 ~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~ki  139 (164)
T PRK14471         90 MIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKV  139 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998887665555554

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=99.00  E-value=1.2e-07  Score=77.12  Aligned_cols=123  Identities=18%  Similarity=0.183  Sum_probs=100.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      .|-|+++.++|.|++|.+|+|+.+.+-+.+   .+.+--+..++...+++    +++..+.+++.++..++.+|+.++..
T Consensus        10 ~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~   89 (164)
T PRK14473         10 LLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARA   89 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355889999999999999999999887764   33333333444444443    66777788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +.++...+++.+.++++++++.+++.+++.+..+++.+.....-++-+.+
T Consensus        90 ~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~ki  139 (164)
T PRK14473         90 QEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRV  139 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888776655544443

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=98.97  E-value=2.2e-07  Score=75.79  Aligned_cols=121  Identities=18%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           77 FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEK-------LNSVKDTSEEVKQLEEQAAAVMRAARAEISAA  149 (213)
Q Consensus        77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~-------l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I  149 (213)
                      +-|.++.+++.++++++++|+.+.+-+.+.-+.-.+.+.+.       ...-+++..++.+++.++..++++|+.++..+
T Consensus         9 ~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~   88 (161)
T COG0711           9 ILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQI   88 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888889999999999999999888776555555554432       22234678888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ  197 (213)
Q Consensus       150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e  197 (213)
                      .++.+.+++.+.++++..++.+++..+.++..++..+..+....+-..
T Consensus        89 ~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aek  136 (161)
T COG0711          89 AEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEK  136 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988766554444

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=98.96  E-value=2.1e-07  Score=73.61  Aligned_cols=124  Identities=20%  Similarity=0.178  Sum_probs=100.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN-------FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~-------~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      +++-|+++.++|.+++|.+++|+.+.+-+.+       .+++-++.-.+....-.++...+.+.+.++..++.+++.++.
T Consensus         6 ~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~   85 (140)
T PRK07353          6 ATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEAD   85 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455777888899999999999988776653       333333333333444457788888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      ...+....+++.+.++++++++.+++.+.+.+..++..+......++-+++
T Consensus        86 ~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kl  136 (140)
T PRK07353         86 KLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKL  136 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999887776665554

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=98.94  E-value=2.2e-07  Score=74.71  Aligned_cols=123  Identities=15%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      ++-|+++.++|.|+||.+++++.+.+-+.+   .+.+--+.......++    .+++..+.++..++..++.+++.++..
T Consensus         6 ~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~   85 (156)
T PRK05759          6 TLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQ   85 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455888889999999999999988777654   3333333333334444    467788888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +.++...+++.+.++++..++.+++.+.+.+..+++.+.....-+.-.++
T Consensus        86 ~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~  135 (156)
T PRK05759         86 IIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKI  135 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888776655444443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=98.94  E-value=3.4e-07  Score=72.99  Aligned_cols=119  Identities=19%  Similarity=0.142  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           81 LPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus        81 l~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      ++.++|.|++|.+++|+.+.+-+.+   .+.+.-+..++...++    .++...+.+.+.++..++.+++.++..+.+++
T Consensus         2 ~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~   81 (147)
T TIGR01144         2 LISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEA   81 (147)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888899999999998877754   4444444444444444    46777788888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA  199 (213)
Q Consensus       154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~  199 (213)
                      ..+++.+.++++.+++.+++.+...+..+++.+.....-++-+.+.
T Consensus        82 ~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll  127 (147)
T TIGR01144        82 KAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKII  127 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877666655553

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=98.92  E-value=3.5e-07  Score=75.89  Aligned_cols=120  Identities=14%  Similarity=0.192  Sum_probs=93.1

Q ss_pred             chHHHHHHHHHHHHHHHHH-HHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDK-IYYSPL-------GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL  150 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~k-fl~kpI-------~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii  150 (213)
                      |+.+.++|.+++|++++++ ++.+-+       .+-+++-++.-.+....-.+++.++.+.+.+++.++.+|+.++..+.
T Consensus        31 ~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~  110 (184)
T PRK13455         31 VVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAA  110 (184)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777777777544 444433       33444444444444444457888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          151 TKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       151 ~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      ++.+.+++.+.++++++++.+++.+++++..+++.+..+..-++-+++
T Consensus       111 e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~ki  158 (184)
T PRK13455        111 EQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADV  158 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888876655554444

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=98.90  E-value=2.8e-07  Score=78.04  Aligned_cols=125  Identities=17%  Similarity=0.158  Sum_probs=88.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGNF-------MDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~-------Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      +|-|+++.++|.|++|..++|+.+.+-|.+.       |++-++.-.+....-.+++.++.+.+.++..++.+++.+++.
T Consensus        55 ~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~  134 (204)
T PRK09174         55 QLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKA  134 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667777777777777777777776655432       222222222223333466777778888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA  200 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~  200 (213)
                      ..++.+.+++.+.++++++++++++++++.+..++..+..+...++-.++..
T Consensus       135 ~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg  186 (204)
T PRK09174        135 KAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIG  186 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888888888888888888888888888888888888777777666666543

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=98.86  E-value=3.1e-07  Score=85.99  Aligned_cols=123  Identities=11%  Similarity=0.079  Sum_probs=98.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNA---IKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~---I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      ..|-|+++.++|.|++|.+|+|+.+.+-+.+-=+.-.+.   .++...+++    ++++.+.+.+.+++.++++|+.+++
T Consensus         2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~   81 (445)
T PRK13428          2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE   81 (445)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456688999999999999999999888776533333333   333333343    3556688999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ  197 (213)
Q Consensus       148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e  197 (213)
                      ++.++...+++.+.++++++++.+++.+++++..+++.+.....-+.-.+
T Consensus        82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~k  131 (445)
T PRK13428         82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGE  131 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998887654444433

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=98.85  E-value=4.7e-07  Score=78.81  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      .+-|+++.++|.|++|.+|+|+.+.+-+.+   .+.+.-+..++...+|    ++++.+..++..+...++.+|+.++..
T Consensus         7 t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~   86 (250)
T PRK14474          7 TVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADE   86 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455788889999999999999999887754   4444444444444555    467778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI  191 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~  191 (213)
                      +.++...+|+.+.++++.+++.+++.+++.+..+++.+.....
T Consensus        87 ~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la  129 (250)
T PRK14474         87 QRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQM  129 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888766543

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.85  E-value=1.9e-07  Score=72.60  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=90.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           77 FNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISAA  149 (213)
Q Consensus        77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~I  149 (213)
                      |-|.++.++|.|++|.+++++.+.+-+.+   .+++..+..++...++    .++...+.+++.+....+.+++.++..+
T Consensus         2 l~~~~i~Flil~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~   81 (132)
T PF00430_consen    2 LFWQLINFLILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKE   81 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788889999999999999998776643   4444444444444444    4667777888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS  196 (213)
Q Consensus       150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~  196 (213)
                      .++...+++.+.++++.+++.+++.....+..++..+......++-+
T Consensus        82 ~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~  128 (132)
T PF00430_consen   82 KEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDLAVDIAE  128 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887765544433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=98.84  E-value=7.2e-07  Score=74.05  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=100.5

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      .+.|+++.++|.|++|..++|+.+-+-+.+   .+++--+..++...++    +++...+.+.+.++..++.+++.++++
T Consensus        33 q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~  112 (181)
T PRK13454         33 QIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQA  112 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356888888899999989988888776654   3333333344444444    467788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI  198 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei  198 (213)
                      +.++.+.+++.+.+.++++++++++..++++..++..+..+....+-..+
T Consensus       113 ~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL  162 (181)
T PRK13454        113 ELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL  162 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888877775554

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=98.83  E-value=6e-07  Score=77.78  Aligned_cols=116  Identities=13%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      ++-|+++.++|.|++|.+|+|+.+.+-+.+   .+.+.-+..++...++    .+++.++.+++.++..++.+|+.++..
T Consensus         7 t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~   86 (246)
T TIGR03321         7 TVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQA   86 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345788889999999999999998887754   3333333344444444    467777888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI  191 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~  191 (213)
                      +.++...+|+.+.++++.+++.+++.+++.+..+++.+.....
T Consensus        87 ~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la  129 (246)
T TIGR03321        87 ERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEV  129 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877765443

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=98.80  E-value=2.1e-06  Score=68.57  Aligned_cols=72  Identities=21%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS  196 (213)
Q Consensus       125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~  196 (213)
                      ...+.+.+.++.....+++.+++...++..++++.+.+..+.++..+++.++.++..+++.+.......+..
T Consensus        65 e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~  136 (141)
T PRK08476         65 ETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNA  136 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333444444444444444444444444444444444445555555555555555555555554444444433

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=98.51  E-value=8.2e-07  Score=77.30  Aligned_cols=95  Identities=25%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------------
Q 028133          118 LNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQK---LAVGRKKIEAELQEALAN------------  182 (213)
Q Consensus       118 l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~i---l~~Ak~e~e~~~~~A~~~------------  182 (213)
                      +.++...++++.+...+++..+.+||.++++|+++|+.+++..++++   .++++.+.+++++.|+.+            
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e  104 (255)
T TIGR03825        25 VTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESE  104 (255)
T ss_pred             eccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44466666677777788888888888888888888888888887777   566777777777777665            


Q ss_pred             ---------------HHHHH---HHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          183 ---------------LERQK---EDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       183 ---------------I~~e~---~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                                     ++...   .....+++.++.+|++.+++||++.
T Consensus       105 ~~~~~~~~i~~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~  152 (255)
T TIGR03825       105 ALSIYQSTIDEANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGV  152 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           44433   4557788999999999999999864

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=98.17  E-value=0.00028  Score=53.93  Aligned_cols=95  Identities=18%  Similarity=0.333  Sum_probs=80.7

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 028133          117 KLNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKS-L  194 (213)
Q Consensus       117 ~l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~e-L  194 (213)
                      .+..++ ...+++++++++.++++.+|+.++.+|+.++..+++...++++..++++++.+......+-+.+....... -
T Consensus        11 eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ka~   90 (108)
T COG2811          11 EIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAA   90 (108)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444 45677888999999999999999999999999999999999999999999988888888888888877764 6


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 028133          195 DSQIAALSEEIVRKVLP  211 (213)
Q Consensus       195 ~~ei~~lA~~ia~KiL~  211 (213)
                      .+++...+++...++|.
T Consensus        91 ~~k~~~~a~~~~~~~l~  107 (108)
T COG2811          91 EGKVVEAALSEFLAILE  107 (108)
T ss_pred             hhHHHHHHHHHHHHHhc
Confidence            77888888888888775

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=98.12  E-value=0.00047  Score=52.36  Aligned_cols=85  Identities=16%  Similarity=0.280  Sum_probs=72.3

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          116 EKLNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL  194 (213)
Q Consensus       116 ~~l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL  194 (213)
                      ..+.+++ ++...+.+...++..++.+|+.++..+.+++..+|..+.++++..|+.+++.++..+..+++.+.......-
T Consensus         6 ~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a   85 (103)
T PRK08404          6 KEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKA   85 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445554 577778899999999999999999999999999999999999999999999999999999999988877666


Q ss_pred             HHHHHH
Q 028133          195 DSQIAA  200 (213)
Q Consensus       195 ~~ei~~  200 (213)
                      +..+..
T Consensus        86 ~~k~~~   91 (103)
T PRK08404         86 EENFET   91 (103)
T ss_pred             HHHHHH
Confidence            555544

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=98.04  E-value=0.00021  Score=52.26  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          118 LNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI  191 (213)
Q Consensus       118 l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~  191 (213)
                      +..++ ++...+.+.+.++..++.+|+.++..+++++..+|+.+.+.++.+|+.+++.+...+..+++.+.....
T Consensus         4 ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~   78 (85)
T TIGR02926         4 IKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMK   78 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44454 567778899999999999999999999999999999999999999999999999999999999887654

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=98.00  E-value=0.00027  Score=56.94  Aligned_cols=82  Identities=23%  Similarity=0.276  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133          131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL  210 (213)
Q Consensus       131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL  210 (213)
                      ...++++++.+|+.++++|+++|+.++++.+++...++..+..+...........+..+....+..++.+++..+++|||
T Consensus        11 ~~~~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~~kil   90 (166)
T TIGR02499        11 ALAQAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQALEQIL   90 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34488999999999999999999999999888888888888888777777888888889999999999999999999999


Q ss_pred             cC
Q 028133          211 PV  212 (213)
Q Consensus       211 ~~  212 (213)
                      +.
T Consensus        91 ~~   92 (166)
T TIGR02499        91 GE   92 (166)
T ss_pred             CC
Confidence            85

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=97.94  E-value=0.004  Score=50.66  Aligned_cols=64  Identities=3%  Similarity=-0.051  Sum_probs=32.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERD---NAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA  142 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~---~~I~~~l~eAe~~~~ea~~~~~eae~~L~~A  142 (213)
                      |+++.++|.|+++..++++.+.+-+.+.=+.-.   +.-+....++++.+++.++...++.....+.
T Consensus        15 w~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I   81 (155)
T PRK06569         15 WLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL   81 (155)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667777777777777766665544333323   3333334444444444444444433333333

>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.92  E-value=0.00066  Score=55.08  Aligned_cols=121  Identities=11%  Similarity=0.194  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           83 IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVE  162 (213)
Q Consensus        83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e  162 (213)
                      +.++.|+++++++++++.+++.+.+|+|.+.|.+.++.......+.-+..-+.......-......+.+-.+++...+.+
T Consensus        18 ~v~~~f~~f~~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ke~~~~~~e   97 (163)
T PF05405_consen   18 LVALCFIIFIIFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIEQVKKEQSLVEGTKMLFEASKENVALQLE   97 (163)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            35789999999999999999999999999999999999987777665555555556666555566666666655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          163 QKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE  203 (213)
Q Consensus       163 ~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~  203 (213)
                      ....+-+..+.++....-..+-......+...++.+.+-..
T Consensus        98 ~~~~~~~~~v~~evk~~Ld~~v~~e~~~r~~~Q~~l~~~v~  138 (163)
T PF05405_consen   98 AFYREQQAAVAQEVKRRLDYWVEYEQSVRRREQKHLVKWVI  138 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444444444444444444444444444445554444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.

>PRK06328 type III secretion system protein; Validated

Probab=97.78  E-value=0.00059  Score=58.53  Aligned_cols=84  Identities=15%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK  208 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K  208 (213)
                      -....+++..|.+++.++.++++++..+++..+++..+++.++--..-.+....+..+......++.+++.+|++.+++|
T Consensus        25 ~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~~~~~~e~~lv~Lal~ia~k  104 (223)
T PRK06328         25 FSALLDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQKLREQVKEALVPLAIASVKK  104 (223)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666666666666655555555554445555677778888889999999999999999


Q ss_pred             hccC
Q 028133          209 VLPV  212 (213)
Q Consensus       209 iL~~  212 (213)
                      |+++
T Consensus       105 Vi~~  108 (223)
T PRK06328        105 IIGK  108 (223)
T ss_pred             HHHH
Confidence            9874

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=97.77  E-value=0.0012  Score=55.03  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAE----LQEALANLERQKEDTIKSLDSQIAAL  201 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~----~~~A~~~I~~e~~~a~~eL~~ei~~l  201 (213)
                      +-.++++.++++++++|+.++++++++++.+++.+.+.++..++.+++..    +..++.+++.++-.++.++.+++.+-
T Consensus        10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~   89 (198)
T PRK03963         10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA   89 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999888888744    44456666666666666666666665


Q ss_pred             HHHHHH
Q 028133          202 SEEIVR  207 (213)
Q Consensus       202 A~~ia~  207 (213)
                      +..-..
T Consensus        90 a~~~l~   95 (198)
T PRK03963         90 VRERLA   95 (198)
T ss_pred             HHHHHH
Confidence            554433

>PRK09098 type III secretion system protein HrpB; Validated

Probab=97.76  E-value=0.0011  Score=57.32  Aligned_cols=88  Identities=16%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEE  204 (213)
Q Consensus       125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~  204 (213)
                      .+-+.+++++++.++.+|+.++++|+++|+.+.+..+++-..+...+...+.............+....++.++.+++..
T Consensus        42 ~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~~e~~Lv~lv~~  121 (233)
T PRK09098         42 DAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARRMRERLAEIVAA  121 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466788888899999999999999999999888888888877777766655444445445556677799999999999


Q ss_pred             HHHhhccC
Q 028133          205 IVRKVLPV  212 (213)
Q Consensus       205 ia~KiL~~  212 (213)
                      +++|+++.
T Consensus       122 ~v~kiv~~  129 (233)
T PRK09098        122 AVEQIVLG  129 (233)
T ss_pred             HHHHHHHh
Confidence            99999864

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.75  E-value=0.0021  Score=54.70  Aligned_cols=72  Identities=18%  Similarity=0.350  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA  200 (213)
Q Consensus       125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~  200 (213)
                      ++.+++.+.+++.++.+|+.+++.|+++|+.++    +.++++++.+++.+..++...++...+++.-+++.++.+
T Consensus        19 ~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EA----e~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~   90 (207)
T PRK01005         19 EETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEA----EKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVEN   90 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777778888888888877777777654    455555555555555566555555555555555555544

>PRK06937 type III secretion system protein; Reviewed

Probab=97.62  E-value=0.0021  Score=54.16  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK  208 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K  208 (213)
                      -...-++++++++||.++++|+++|++..+..+++-.++..++...+..+...+...+..+...++.+++.++++.+++|
T Consensus        26 ~~~~~~A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl~ia~k  105 (204)
T PRK06937         26 YQSLLSAEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVLEAVRK  105 (204)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888888888888888888888877777777777766665544444445556677889999999999999999


Q ss_pred             hccC
Q 028133          209 VLPV  212 (213)
Q Consensus       209 iL~~  212 (213)
                      |+++
T Consensus       106 il~~  109 (204)
T PRK06937        106 ILND  109 (204)
T ss_pred             HHhc
Confidence            9974

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=97.58  E-value=0.0024  Score=53.69  Aligned_cols=75  Identities=19%  Similarity=0.234  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          128 VKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV  206 (213)
Q Consensus       128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia  206 (213)
                      .++...+++.++.+|+.++++|+++|+++++..    +.+|+.+++.............+++..-.+++.+.+......
T Consensus        17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i----~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~   91 (198)
T PRK01558         17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKEL----KAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAAL   91 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666665433    444555555555555555555555555555555544333333

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=97.54  E-value=0.0034  Score=52.66  Aligned_cols=82  Identities=18%  Similarity=0.301  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133          131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL  210 (213)
Q Consensus       131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL  210 (213)
                      ...+++.++.+|+.++++|+.+|+.+++...+....++.++..+....-......+.+.....+.+.+..+..+..+++|
T Consensus        28 ~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~al~~lL  107 (191)
T PF06188_consen   28 AQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQALERLL  107 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888888888888888888555555555555555555566677777777788888888888888877


Q ss_pred             cC
Q 028133          211 PV  212 (213)
Q Consensus       211 ~~  212 (213)
                      .+
T Consensus       108 ~e  109 (191)
T PF06188_consen  108 DE  109 (191)
T ss_pred             Hc
Confidence            53

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=97.46  E-value=0.0086  Score=45.84  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE  203 (213)
Q Consensus       125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~  203 (213)
                      ..++.+....+...+.+|+.++.+++.+|+.++....++.-.+|++..+..++.++.+++.+..+...+-+.++.++..
T Consensus         9 l~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~   87 (108)
T COG2811           9 LREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILS   87 (108)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555666666666666666666666666666666666666666666666666666555555555555544

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=97.35  E-value=0.005  Score=51.27  Aligned_cols=72  Identities=15%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEIS----AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA  200 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea~----~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~  200 (213)
                      +..++++.+++.++++++.++.    .++.+++.+++.++.+++..++.++...+-.++.++   ..++..+++.++..
T Consensus        21 ~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el---~~~v~~~a~~~l~~   96 (198)
T PRK03963         21 YILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEEL---ISEVLEAVRERLAE   96 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            3344444445555444444444    666777777777777777777777777776666665   33333444444443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.34  E-value=0.0032  Score=53.49  Aligned_cols=69  Identities=14%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          118 LNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQ  186 (213)
Q Consensus       118 l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e  186 (213)
                      +.+|+ +..+-+.+++.+++.++.+|+.+++.|+++++.+++.++.++...++-...+.+..+++++..+
T Consensus        22 L~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~   91 (207)
T PRK01005         22 LKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENK   91 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33443 3445566777777888888888888888888888888888888888877777777777776554

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=97.22  E-value=0.013  Score=44.15  Aligned_cols=89  Identities=18%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALS  202 (213)
Q Consensus       123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA  202 (213)
                      ++..-+++++.+....|.+|+.++...++..+.+.+.++.....+...+.+........+...+.............+..
T Consensus        15 eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv   94 (105)
T PF03179_consen   15 EAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVV   94 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45555666666667777777777777777777777777777766666666666666666666666666666666666777


Q ss_pred             HHHHHhhcc
Q 028133          203 EEIVRKVLP  211 (213)
Q Consensus       203 ~~ia~KiL~  211 (213)
                      ..+.+.|+.
T Consensus        95 ~~ll~~V~~  103 (105)
T PF03179_consen   95 DMLLSRVCD  103 (105)
T ss_dssp             HHHHH----
T ss_pred             HHHHHHHcC
Confidence            777776654

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=97.18  E-value=0.019  Score=47.49  Aligned_cols=72  Identities=11%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA  200 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~  200 (213)
                      ++.+.+.++++.+|+.++.+|+++|+++++...+++..+++++.+....++......+.+...-..+.++.+
T Consensus        12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~   83 (188)
T PRK02292         12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLE   83 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777777777777777777777777777777776666555555555443333333333

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=97.14  E-value=0.022  Score=49.57  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------------------HHHHH
Q 028133          123 DTSEEVKQLEEQAAAVMRAARAEISAALTKM---KKETQLEVEQKLAVGRKK-----------------------IEAEL  176 (213)
Q Consensus       123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A---k~eAe~e~e~il~~Ak~e-----------------------~e~~~  176 (213)
                      +....+.+++.++..++.+|+.+++++++++   ..+++.+.++++.+|+++                       +..++
T Consensus        41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i~  120 (255)
T TIGR03825        41 EFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAIV  120 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444456666666666666666666666655   355555556666655555                       55667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133          177 QEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP  211 (213)
Q Consensus       177 ~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~  211 (213)
                      ..++............++-+-+..++-.+..+-|.
T Consensus       121 ~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~  155 (255)
T TIGR03825       121 EEAKDDYEEKIESAQPLIIELACALAEKVIGVSLA  155 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            78888888888888888888888888888877653

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=97.13  E-value=0.015  Score=48.52  Aligned_cols=61  Identities=13%  Similarity=0.025  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED  189 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~  189 (213)
                      +++..+++.++.+|+.++.+|+++++.+++...+.+...++.+++...++.....+-+.+.
T Consensus        12 ~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~   72 (185)
T PRK01194         12 KSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARS   72 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4567778888888888888888888888888888888888888876666555544444443

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=97.13  E-value=0.042  Score=48.38  Aligned_cols=88  Identities=19%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028133          124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEV-EQKLAVGRKKIEAELQEALA---NLERQKEDTIKSLDSQIA  199 (213)
Q Consensus       124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~-e~il~~Ak~e~e~~~~~A~~---~I~~e~~~a~~eL~~ei~  199 (213)
                      +...+.+++.+++....+++.++.++++++++++..+- ++..+++..+.+..+.....   .+..........+..++.
T Consensus        90 a~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~~~l~~~e~elv  169 (281)
T PRK06669         90 ASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKREEILESSEEEIV  169 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555554332 22233333333333333332   234455566677889999


Q ss_pred             HHHHHHHHhhcc
Q 028133          200 ALSEEIVRKVLP  211 (213)
Q Consensus       200 ~lA~~ia~KiL~  211 (213)
                      ++++.++++|++
T Consensus       170 ~Lal~iaekvi~  181 (281)
T PRK06669        170 ELALDIAKKVIK  181 (281)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999985

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.13  E-value=0.019  Score=47.20  Aligned_cols=78  Identities=19%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV  206 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia  206 (213)
                      ++++.++++++.+|+.+++.++++++.+++...+..+..++.+++..+.......+.+.....-..+.++.+-..+-+
T Consensus         4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~   81 (198)
T PF01991_consen    4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEV   81 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888899999999999999999999998888888888888777777776666666655555555444444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=97.07  E-value=0.022  Score=48.00  Aligned_cols=6  Identities=0%  Similarity=0.285  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 028133           93 FALDKI   98 (213)
Q Consensus        93 ~iL~kf   98 (213)
                      +++.++
T Consensus        14 ~~~G~~   19 (201)
T PF12072_consen   14 IGIGYL   19 (201)
T ss_pred             HHHHHH
Confidence            333333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=96.94  E-value=0.027  Score=42.43  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          127 EVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE  203 (213)
Q Consensus       127 ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~  203 (213)
                      ++-++..++..++.+|+.+...++.+|+.+|+.+.+....+...+.....................+...++..+-.
T Consensus         8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~   84 (105)
T PF03179_consen    8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKK   84 (105)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999888888777777766666666666665555555433

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=96.92  E-value=0.18  Score=42.37  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=62.5

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          119 NSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL  194 (213)
Q Consensus       119 ~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL  194 (213)
                      ++|+ +...-+.+++++++.++.+|+.++++|+.+++.+++....++...++....+.+-.++++|.........++
T Consensus        18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~~~~   94 (198)
T PRK01558         18 EEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAALKDE   94 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 455567788999999999999999999999999999999999999999999999988888865554444443

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.76  E-value=0.03  Score=45.99  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          140 RAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQK  187 (213)
Q Consensus       140 ~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~  187 (213)
                      ++|+.++++|+++|+.+++...+++..+++...+.....++.+++..+
T Consensus         4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (198)
T PF01991_consen    4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEK   51 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444443333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=96.66  E-value=0.056  Score=45.90  Aligned_cols=81  Identities=26%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133          132 EEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP  211 (213)
Q Consensus       132 ~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~  211 (213)
                      -.+..+.+..|+.++++|++.++..-+.++.+=..+++.+..+.......+--.+....+..|.+++.+|++.++++|||
T Consensus        29 w~da~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LVl~~Vr~ILg  108 (207)
T PF06635_consen   29 WRDAAAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELVLEIVRKILG  108 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667788999999999999999999999988888888777666666666666677778888999999999999999998


Q ss_pred             C
Q 028133          212 V  212 (213)
Q Consensus       212 ~  212 (213)
                      .
T Consensus       109 ~  109 (207)
T PF06635_consen  109 E  109 (207)
T ss_pred             c
Confidence            5

The function of this family is unclear.; GO: 0009877 nodulation

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=96.42  E-value=0.12  Score=43.53  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVR  207 (213)
Q Consensus       130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~  207 (213)
                      ++.++++.++.+|+.++..|.++++..++...+.++..++++++....++......+.....-+.+.++.+-..+.+.
T Consensus        14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~~~~~~   91 (194)
T COG1390          14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVE   91 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777778888888888888888888888888777777777776666665555554444444444444444333

>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]

Probab=96.26  E-value=0.28  Score=37.40  Aligned_cols=80  Identities=25%  Similarity=0.330  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEA-------LANLERQKEDTIKSLDSQIAALSE  203 (213)
Q Consensus       131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A-------~~~I~~e~~~a~~eL~~ei~~lA~  203 (213)
                      +..++..++.+||.....-+.+|+.+|+.+.++...+-+.+.......+       ..+++.+...-..+|+..+.....
T Consensus        14 AEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~   93 (108)
T KOG1772|consen   14 AEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSD   93 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444455555555555555555555555555555544444444333333       455666666666667766666666


Q ss_pred             HHHHhhc
Q 028133          204 EIVRKVL  210 (213)
Q Consensus       204 ~ia~KiL  210 (213)
                      +++..||
T Consensus        94 ~Vv~~LL  100 (108)
T KOG1772|consen   94 DVVDMLL  100 (108)
T ss_pred             HHHHHHH
Confidence            6666555

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=96.23  E-value=0.15  Score=42.92  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLE  184 (213)
Q Consensus       149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~  184 (213)
                      +...++++++..+.+++..|..++.+..-.++.++-
T Consensus        48 ~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l   83 (194)
T COG1390          48 ILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL   83 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666666666666666665555555543

>TIGR01069 mutS2 MutS2 family protein

Probab=96.16  E-value=0.15  Score=51.22  Aligned_cols=72  Identities=11%  Similarity=0.107  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          105 NFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL  176 (213)
Q Consensus       105 ~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~  176 (213)
                      .-|++.+..++...+++++.+.++++.+++++...++.+.+.++++++++.+++...++...+++.-+++.+
T Consensus       518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk  589 (771)
T TIGR01069       518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELK  589 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666777777777777777777777777777777777777666554444444444443333

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.06  E-value=0.038  Score=40.63  Aligned_cols=63  Identities=10%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRA  141 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~  141 (213)
                      .+++|.++.|+++++++.+++.|.+.+.+.-|...+.....+......+..+....+...+.+
T Consensus        10 sQ~fW~~i~f~~~y~~~~~~~lP~i~~~lk~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   72 (86)
T PF02326_consen   10 SQYFWLLIFFFFFYIFLVNFILPKISRILKLRSKLSSSSISSKSKLNSESSKLSVSYDKLLSN   72 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHH
Confidence            367899999999999999999999999999999999988877666666665555555555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=96.06  E-value=0.2  Score=41.93  Aligned_cols=81  Identities=17%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          117 KLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALT----KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIK  192 (213)
Q Consensus       117 ~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~----~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~  192 (213)
                      .+....+.++-+++++.+++.++.+|+.+++.+++    ++.++.......++...+.+.+.+........+.-...+..
T Consensus        25 ~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~al~  104 (191)
T PF06188_consen   25 QLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQALE  104 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566777888999999999999999999999    55555555556666677777666666666665555555555


Q ss_pred             HHHHH
Q 028133          193 SLDSQ  197 (213)
Q Consensus       193 eL~~e  197 (213)
                      .+-++
T Consensus       105 ~lL~e  109 (191)
T PF06188_consen  105 RLLDE  109 (191)
T ss_pred             HHHHc
Confidence            44443

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK12704 phosphodiesterase; Provisional

Probab=96.06  E-value=0.41  Score=46.04  Aligned_cols=8  Identities=25%  Similarity=0.497  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q 028133           81 LPIIMVEF   88 (213)
Q Consensus        81 l~~~lInF   88 (213)
                      +++.++.|
T Consensus         7 ~~~~ivg~   14 (520)
T PRK12704          7 ILIALVAL   14 (520)
T ss_pred             HHHHHHHH
Confidence            33334443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=96.02  E-value=0.24  Score=49.79  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          106 FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL  180 (213)
Q Consensus       106 ~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~  180 (213)
                      -+++.+...+...+++++.+.++++.+++++...++.+.+.++++++++++++.    ++.+++.++++.+.+.+
T Consensus       524 ~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~----~l~~a~~~~~~~i~~lk  594 (782)
T PRK00409        524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ----AIKEAKKEADEIIKELR  594 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            344444445555566666666777777777777777776666666666665544    44444444444444443

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=95.98  E-value=0.49  Score=36.61  Aligned_cols=43  Identities=30%  Similarity=0.322  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIE  173 (213)
Q Consensus       131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e  173 (213)
                      +..++..++.+||.....-+.+|+.+|+.+.+....+-+.+-.
T Consensus        14 AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~   56 (113)
T TIGR01147        14 AEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFK   56 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444333333

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=95.83  E-value=0.5  Score=36.55  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          112 NAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI  191 (213)
Q Consensus       112 ~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~  191 (213)
                      ..|+.-|..=+++..-+.++++.-...|.+|+.+|+.-|+.-+.+-+.+......+..-..+..-.....+-+.+.....
T Consensus         6 ~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik   85 (113)
T TIGR01147         6 QGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIK   85 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            35666665555677777788888888999999999999999988888888887766554444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 028133          192 KSLDSQIAALSEEIVRKV  209 (213)
Q Consensus       192 ~eL~~ei~~lA~~ia~Ki  209 (213)
                      ......-.++...+...|
T Consensus        86 ~~~~~~~~~Vv~~Ll~~V  103 (113)
T TIGR01147        86 KAVQKNKDAVIKDLLHLV  103 (113)
T ss_pred             HHHHHhHHHHHHHHHHHH
Confidence            444444444444444443

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>PRK09098 type III secretion system protein HrpB; Validated

Probab=95.83  E-value=0.67  Score=40.03  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          128 VKQLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus       128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      ......+.++.+++||.++++|+++|+.+|+
T Consensus        34 ~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~   64 (233)
T PRK09098         34 LAAVHAERDAVLAAARARAERIVAEARAQAE   64 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555443

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=95.81  E-value=0.28  Score=35.74  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISA  148 (213)
Q Consensus        81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~  148 (213)
                      .++..+.|++|++++.++ ...+.+.+++=.+.++.--++.+....+......+.+..+++.+.+.+.
T Consensus         3 ~lI~Aiaf~vLvi~l~~~-l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~   69 (90)
T PF06103_consen    3 GLIAAIAFAVLVIFLIKV-LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK   69 (90)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456678899988888876 4556777887777777777777777777777777777777776655543

>PRK00106 hypothetical protein; Provisional

Probab=95.65  E-value=0.81  Score=44.23  Aligned_cols=44  Identities=11%  Similarity=0.068  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          137 AVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL  180 (213)
Q Consensus       137 ~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~  180 (213)
                      ..+.+|+.+++.++.++..+++.+..+...++++++...+.+.+
T Consensus        46 ~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElE   89 (535)
T PRK00106         46 NLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIE   89 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444433333333

>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional

Probab=95.43  E-value=0.051  Score=38.21  Aligned_cols=38  Identities=8%  Similarity=0.091  Sum_probs=35.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE  116 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~  116 (213)
                      .+++|.++.|+++++++.+++.|.+.+.++.|......
T Consensus        11 sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~   48 (67)
T MTH00169         11 TQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS   48 (67)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46889999999999999999999999999999998877

>PRK12705 hypothetical protein; Provisional

Probab=95.41  E-value=2.7  Score=40.45  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028133          180 LANLERQKEDTIKSLDSQIAALSEEIVRKV  209 (213)
Q Consensus       180 ~~~I~~e~~~a~~eL~~ei~~lA~~ia~Ki  209 (213)
                      +.++..+.....++...++..-|...|..+
T Consensus       152 ~~~~~~e~~~~i~~~e~~~~~~a~~~A~~i  181 (508)
T PRK12705        152 DAELEEEKAQRVKKIEEEADLEAERKAQNI  181 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=95.40  E-value=0.46  Score=39.17  Aligned_cols=80  Identities=23%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028133          124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLER-QKEDTIKSLDSQIAALS  202 (213)
Q Consensus       124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~-e~~~a~~eL~~ei~~lA  202 (213)
                      ..+-..++..+++.++.+|+.+++++.+++..+++.+...+...+...+........-..++ -..+...+++.++..+.
T Consensus        18 ~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~   97 (188)
T PRK02292         18 ASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLD   97 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445677788889999999999999999999888888888776665555444433221111 12333444444444444


Q ss_pred             H
Q 028133          203 E  203 (213)
Q Consensus       203 ~  203 (213)
                      .
T Consensus        98 ~   98 (188)
T PRK02292         98 G   98 (188)
T ss_pred             h
Confidence            3

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=95.27  E-value=0.36  Score=40.19  Aligned_cols=74  Identities=9%  Similarity=0.113  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEISAALT----KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAAL  201 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~----~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~l  201 (213)
                      .-..++..+++.++.+++.+++.+.+    +++.++...+++++..|+-+....+-.+++++   .+++..+...++..+
T Consensus        20 ~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~---I~~v~~~a~e~L~~l   96 (185)
T PRK01194         20 EINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREI---LKDYLDIAYEHLMNI   96 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc
Confidence            33455666666666666666665554    55666666677777777777776666665554   344444444444444


Q ss_pred             H
Q 028133          202 S  202 (213)
Q Consensus       202 A  202 (213)
                      .
T Consensus        97 ~   97 (185)
T PRK01194         97 T   97 (185)
T ss_pred             c
Confidence            3

>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated

Probab=94.97  E-value=0.072  Score=37.77  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028133           79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEK  117 (213)
Q Consensus        79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~  117 (213)
                      .+++|.++.|+++++++.+++.|.+.+.+..|....++.
T Consensus        11 nQi~W~~i~f~il~~l~sk~iLP~i~~~~~~R~~i~k~~   49 (70)
T MTH00025         11 TQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMKKG   49 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            468899999999999999999999999999999877643

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=94.84  E-value=1.4  Score=38.72  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGR  169 (213)
Q Consensus       123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak  169 (213)
                      .....+.++..+++..+.+++.++++++++++.+++..+++..+++.
T Consensus        78 ~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy  124 (281)
T PRK06669         78 EAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGY  124 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666666666666555555544443

>PRK00106 hypothetical protein; Provisional

Probab=94.82  E-value=4.2  Score=39.43  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKI  172 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~  172 (213)
                      ++++.+++...++++.++++...+++.+++.+..+...+.+++.
T Consensus        49 eeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel   92 (535)
T PRK00106         49 GKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEF   92 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666666666666666666555555555443

>TIGR01069 mutS2 MutS2 family protein

Probab=94.65  E-value=2.1  Score=43.11  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          104 GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANL  183 (213)
Q Consensus       104 ~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I  183 (213)
                      ..++.+....+.+-++..++.+.++++...+.++.+.+++...++ +++-.++.+..+++++.++++++++++.+++.++
T Consensus       503 ~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~  581 (771)
T TIGR01069       503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE-LEQEMEELKERERNKKLELEKEAQEALKALKKEV  581 (771)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666666666666666666666555444 3344445555666666666666666666666655


Q ss_pred             HHHHHHHH
Q 028133          184 ERQKEDTI  191 (213)
Q Consensus       184 ~~e~~~a~  191 (213)
                      +.-.++.+
T Consensus       582 ~~~i~~lk  589 (771)
T TIGR01069       582 ESIIRELK  589 (771)
T ss_pred             HHHHHHHH
Confidence            55444443

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]

Probab=94.35  E-value=1.8  Score=33.11  Aligned_cols=91  Identities=12%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          110 RDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED  189 (213)
Q Consensus       110 R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~  189 (213)
                      +...|..-|..=.++.+.+++++.--...|.+|+.|+..-+++-+.+-+.+...-...+--.-...-.....+.+.....
T Consensus         4 q~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~   83 (108)
T KOG1772|consen    4 QSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAG   83 (108)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence            45567776666667788888888888889999999999999999888888887776666333333333333444444443


Q ss_pred             HHHHHHHHHHH
Q 028133          190 TIKSLDSQIAA  200 (213)
Q Consensus       190 a~~eL~~ei~~  200 (213)
                      ........-.+
T Consensus        84 lk~~~~k~~~~   94 (108)
T KOG1772|consen   84 LKTSAQKNSDD   94 (108)
T ss_pred             HHHHHHHhhHH
Confidence            33333333333

>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]

Probab=94.24  E-value=3.4  Score=35.96  Aligned_cols=44  Identities=18%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           83 IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSE  126 (213)
Q Consensus        83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~  126 (213)
                      +..+.|++|+++..+.+.+.+.++.|++.++|.+.++++.+..-
T Consensus        99 ~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~i  142 (247)
T KOG3976|consen   99 ISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHI  142 (247)
T ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999988875443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=94.13  E-value=3.7  Score=41.49  Aligned_cols=87  Identities=20%  Similarity=0.279  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          104 GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANL  183 (213)
Q Consensus       104 ~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I  183 (213)
                      .+.+.+....+..-++..++.+.++++...+.+..+.+++....+ +++-+++.+.++++++.++++++++.+++++.++
T Consensus       508 ~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~  586 (782)
T PRK00409        508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE-LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA  586 (782)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666777777777777777777777777777777665555 4445566677888888888888888888888877


Q ss_pred             HHHHHHHH
Q 028133          184 ERQKEDTI  191 (213)
Q Consensus       184 ~~e~~~a~  191 (213)
                      +.-..+.+
T Consensus       587 ~~~i~~lk  594 (782)
T PRK00409        587 DEIIKELR  594 (782)
T ss_pred             HHHHHHHH
Confidence            66555554

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.80  E-value=2.5  Score=36.54  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          174 AELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       174 ~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      +....-..++..+.+.....+.+++.+++.+++++||+.
T Consensus        95 e~~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~  133 (234)
T COG1317          95 ERLAKLIAEFQAELEALKEVVEKQLVQLVLEIARKVIGK  133 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            445555566666677777789999999999999999863

>PRK15322 invasion protein OrgB; Provisional

Probab=93.68  E-value=3.9  Score=34.77  Aligned_cols=55  Identities=15%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL  180 (213)
Q Consensus       123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~  180 (213)
                      -.+.-.++++.++..++.+|+.+++.|...|..++-..   -+.++..+++.-+.+.+
T Consensus        13 ~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~---Gl~qa~~~la~~~a~~~   67 (210)
T PRK15322         13 SAERLEQQARRRAKRILRQAEEEAETLRMYAYQEGYEQ---GMIDALQQVAAYLTDNQ   67 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            33444455666666666666666666666666655432   25555555554444433

>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences

Probab=93.27  E-value=0.92  Score=38.15  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133           83 IIMVEFLVLMFALDKIYYSPLGNFMDER  110 (213)
Q Consensus        83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R  110 (213)
                      |.++..+|++|+++..+.+.+ ..+.+|
T Consensus        38 Wyil~~~I~ly~l~qkl~~~~-r~~r~~   64 (190)
T PF06936_consen   38 WYILFGCILLYLLWQKLSPSF-RSLRER   64 (190)
T ss_dssp             ------------------HHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence            444444444444444444444 333333

SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.

>PRK06328 type III secretion system protein; Validated

Probab=93.24  E-value=4.8  Score=34.44  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          122 KDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVE  162 (213)
Q Consensus       122 e~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e  162 (213)
                      .+..+-++++++++++.+.+++.+++++++++++++-.+--
T Consensus        29 ~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~   69 (223)
T PRK06328         29 LDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGS   69 (223)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677888888899999999999999888877765553

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=92.76  E-value=5.2  Score=33.54  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKD--------TSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus        81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~--------~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      ++..+|.|++-|++.+++....+...-.+.+.-+.+...+|+.        .+++..+.+.+++..+..-+.+..
T Consensus         7 i~~~~vG~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~   81 (201)
T PF12072_consen    7 IVALIVGIGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQ   81 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446778888888877777777766666666666655555543        333334444444444444444433

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK12705 hypothetical protein; Provisional

Probab=92.35  E-value=11  Score=36.32  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEI  146 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea  146 (213)
                      +++...+.+.+..+.+.+.+.
T Consensus        59 ~~~~~~~~~~e~e~~~~~~~~   79 (508)
T PRK12705         59 ELLLRERNQQRQEARREREEL   79 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=92.25  E-value=4.8  Score=31.96  Aligned_cols=77  Identities=17%  Similarity=0.136  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALS  202 (213)
Q Consensus       123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA  202 (213)
                      +..+-+++++.++++++.+|+.+.++...+...++       +.++..+....+..+..+.+........++..-+...+
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G-------~~~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~   86 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQG-------LEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQAL   86 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777778888888877777655444433       33334444444444444444444444555555444444


Q ss_pred             HHHH
Q 028133          203 EEIV  206 (213)
Q Consensus       203 ~~ia  206 (213)
                      -.+.
T Consensus        87 ~kil   90 (166)
T TIGR02499        87 EQIL   90 (166)
T ss_pred             HHHh
Confidence            4443

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK04654 sec-independent translocase; Provisional

Probab=91.70  E-value=5.3  Score=34.14  Aligned_cols=7  Identities=29%  Similarity=0.790  Sum_probs=4.8

Q ss_pred             cCCccch
Q 028133           74 LFDFNLT   80 (213)
Q Consensus        74 l~~~n~t   80 (213)
                      ||||.|+
T Consensus         1 MFgIG~~    7 (214)
T PRK04654          1 MFDIGVG    7 (214)
T ss_pred             CCCccHH
Confidence            6777764

>PRK06397 V-type ATP synthase subunit H; Validated

Probab=91.03  E-value=5.5  Score=30.15  Aligned_cols=72  Identities=15%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          105 NFMDERDNAIKEKLNSVKD-TSEEVKQLEEQAAAVMRAARAEIS----AALTKMKKETQLEVEQKLAVGRKKIEAEL  176 (213)
Q Consensus       105 ~~Ld~R~~~I~~~l~eAe~-~~~ea~~~~~eae~~L~~Ar~ea~----~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~  176 (213)
                      +++.+.+..+..++....+ ......++..+|+..+..-..+..    ..+.++|++++.....++++|+++++.+.
T Consensus        13 kiIKeKE~S~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE~ka~eiI~~Akq~As~i~   89 (111)
T PRK06397         13 KIIKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEIINKAKQEASLIK   89 (111)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666666655543 233345555555555554444433    34445666666666777777777776554

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=90.64  E-value=7  Score=36.86  Aligned_cols=16  Identities=6%  Similarity=0.395  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 028133           82 PIIMVEFLVLMFALDK   97 (213)
Q Consensus        82 ~~~lInFlIL~~iL~k   97 (213)
                      +|+++.-.++.+++.+
T Consensus       260 lwtl~Qq~i~~~~l~~  275 (429)
T PRK00247        260 LWTLIQNIIMYLILER  275 (429)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445544555555554

>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []

Probab=90.41  E-value=4  Score=32.38  Aligned_cols=70  Identities=14%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             hcccCCcc--chHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 028133           71 KAALFDFN--LTLPI----IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKD--------TSEEVKQLEEQAA  136 (213)
Q Consensus        71 ~g~l~~~n--~tl~~----~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~--------~~~ea~~~~~eae  136 (213)
                      .|++|+|+  |++++    ++|.|+.++++-+-  ...=.+.|..+-+.+-....+|++        ..+++++.+..|+
T Consensus        31 ~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~--q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~  108 (132)
T PF04120_consen   31 SGPVFGFSDTWQLVINTATTIITFLMVFLIQNT--QNRDTKALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYE  108 (132)
T ss_pred             HhccccCcchHHHHHccHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHH
Confidence            47788875  55554    35655555444332  233334555555555555554432        2344455555554


Q ss_pred             HHHHHH
Q 028133          137 AVMRAA  142 (213)
Q Consensus       137 ~~L~~A  142 (213)
                      +.-..+
T Consensus       109 ~~~~~~  114 (132)
T PF04120_consen  109 RLAEQA  114 (132)
T ss_pred             HHHHHh
Confidence            444333

Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport

>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences

Probab=90.27  E-value=5.4  Score=33.56  Aligned_cols=27  Identities=7%  Similarity=0.038  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133           85 MVEFLVLMFALDKIYYSPLGNFMDERD  111 (213)
Q Consensus        85 lInFlIL~~iL~kfl~kpI~~~Ld~R~  111 (213)
                      ..=|+|+.+|+.+|+|+.+..-+...+
T Consensus        36 yGWyil~~~I~ly~l~qkl~~~~r~~r   62 (190)
T PF06936_consen   36 YGWYILFGCILLYLLWQKLSPSFRSLR   62 (190)
T ss_dssp             --------------------HHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455778888889999999999884333

SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=90.22  E-value=12  Score=36.11  Aligned_cols=31  Identities=6%  Similarity=0.209  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028133          179 ALANLERQKEDTIKSLDSQIAALSEEIVRKV  209 (213)
Q Consensus       179 A~~~I~~e~~~a~~eL~~ei~~lA~~ia~Ki  209 (213)
                      .+.+.+.+......+...++..-|...|.+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i  187 (514)
T TIGR03319       157 VEEEARHEAAKLIKEIEEEAKEEADKKAKEI  187 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=89.86  E-value=12  Score=32.16  Aligned_cols=87  Identities=14%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           85 MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQK  164 (213)
Q Consensus        85 lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~i  164 (213)
                      +..|.++++++.+-++.-+......|..  +....+.+..+..++..-. +++......++.....++.++.     ..-
T Consensus       102 isGf~LFL~lvI~R~~~ll~~l~~l~~~--~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~kL~~el~~~-----~~~  173 (216)
T KOG1962|consen  102 ISGFVLFLSLVIRRLHTLLRELATLRAN--EKAMKENEALKKQLENSSK-LEEENDKLKADLEKLETELEKK-----QKK  173 (216)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHHHHHHHHHH-----HHH
Confidence            3458888888888888888888888876  3333333333333332222 3444444444444443333322     233


Q ss_pred             HHHHHHHHHHHHHHH
Q 028133          165 LAVGRKKIEAELQEA  179 (213)
Q Consensus       165 l~~Ak~e~e~~~~~A  179 (213)
                      ++.++++.+..+++.
T Consensus       174 Le~~~~~~~al~Kq~  188 (216)
T KOG1962|consen  174 LEKAQKKVDALKKQS  188 (216)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444555555544444

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=89.08  E-value=3.8  Score=35.08  Aligned_cols=15  Identities=13%  Similarity=0.202  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 028133          174 AELQEALANLERQKE  188 (213)
Q Consensus       174 ~~~~~A~~~I~~e~~  188 (213)
                      .....++..|.....
T Consensus       108 sLV~~~~~~I~~aI~  122 (224)
T PRK15354        108 SLVDHAAHHIKNSIE  122 (224)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444444

>PRK11637 AmiB activator; Provisional

Probab=88.56  E-value=21  Score=33.22  Aligned_cols=42  Identities=12%  Similarity=0.166  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          106 FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS  147 (213)
Q Consensus       106 ~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~  147 (213)
                      -..++.+.++.++...++...+.+....+.+..+.....+..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~   85 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS   85 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444333

>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]

Probab=87.93  E-value=14  Score=30.33  Aligned_cols=22  Identities=14%  Similarity=0.296  Sum_probs=14.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 028133          100 YSPLGNFMDERDNAIKEKLNSV  121 (213)
Q Consensus       100 ~kpI~~~Ld~R~~~I~~~l~eA  121 (213)
                      ..-+..-++-++..+...+..+
T Consensus        24 Ir~lq~~~e~k~~~l~e~l~~~   45 (175)
T COG4741          24 IRSLQGKVESKARELEETLQKA   45 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666776666666655

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=87.24  E-value=13  Score=29.32  Aligned_cols=47  Identities=17%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133          162 EQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK  208 (213)
Q Consensus       162 e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K  208 (213)
                      ..-+..-..+..+.......++..+.......+..++......++++
T Consensus        82 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~  128 (158)
T PF03938_consen   82 QQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE  128 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666666666777777777777777777777777766653

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=86.51  E-value=1.4  Score=34.71  Aligned_cols=33  Identities=15%  Similarity=0.330  Sum_probs=25.8

Q ss_pred             ccchHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133           77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNFMDER  110 (213)
Q Consensus        77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~Ld~R  110 (213)
                      ++|..|+ .+|||+|+-|.+ .++.+++.+..++-
T Consensus        68 i~yG~Fi~~vinFlIiAf~i-Fl~Vk~inkl~~~~  101 (130)
T COG1970          68 IAYGAFIQAVINFLIIAFAI-FLVVKAINKLRRKL  101 (130)
T ss_pred             eeHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            5566666 589999999998 77788888776653

>PRK04098 sec-independent translocase; Provisional

Probab=86.39  E-value=15  Score=30.01  Aligned_cols=7  Identities=14%  Similarity=0.558  Sum_probs=4.0

Q ss_pred             cCCccch
Q 028133           74 LFDFNLT   80 (213)
Q Consensus        74 l~~~n~t   80 (213)
                      ||++.|+
T Consensus         1 MfgiG~~    7 (158)
T PRK04098          1 MFGMGFF    7 (158)
T ss_pred             CCCCcHH
Confidence            5666554

>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]

Probab=86.20  E-value=20  Score=30.60  Aligned_cols=51  Identities=24%  Similarity=0.421  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          107 MDERDNAIKEKLNSVKDTSE--EVKQLEEQAAAVMRAARAEISAALTKMKKET  157 (213)
Q Consensus       107 Ld~R~~~I~~~l~eAe~~~~--ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eA  157 (213)
                      +.+|.+.+...+........  ........++.....+..++..|+.++...+
T Consensus        49 l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a  101 (212)
T COG3599          49 LEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQA  101 (212)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444433211  2233333444455555555555555555444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.08  E-value=23  Score=36.12  Aligned_cols=21  Identities=14%  Similarity=0.294  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 028133          105 NFMDERDNAIKEKLNSVKDTS  125 (213)
Q Consensus       105 ~~Ld~R~~~I~~~l~eAe~~~  125 (213)
                      .|=|+|++.......+.++.+
T Consensus       313 TFEDKrkeNy~kGqaELerRR  333 (1118)
T KOG1029|consen  313 TFEDKRKENYEKGQAELERRR  333 (1118)
T ss_pred             chhhhhHHhHhhhhHHHHHHH
Confidence            355667666655444444333

>PRK09039 hypothetical protein; Validated

Probab=85.69  E-value=28  Score=31.71  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028133           81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAI  114 (213)
Q Consensus        81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I  114 (213)
                      .+..++.|++.+|++.-|++.--....++.=+..
T Consensus        25 ~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L   58 (343)
T PRK09039         25 TLLLVIMFLLTVFVVAQFFLSREISGKDSALDRL   58 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3456788888888888887665444333333333

>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response

Probab=85.48  E-value=1.6  Score=34.47  Aligned_cols=32  Identities=13%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             ccchHHH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 028133           77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNFMDE  109 (213)
Q Consensus        77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~Ld~  109 (213)
                      ++++.|+ .+|||+|..+++ +++.+|+.+...+
T Consensus        68 i~yG~Fl~a~I~FlIiA~vv-Flivk~~nk~~~~  100 (128)
T PF01741_consen   68 IPYGAFLNALINFLIIAFVV-FLIVKPINKLKKK  100 (128)
T ss_dssp             E-HCHHHHHHHHHHHHHHHH-HHCHHHHHHCHHT
T ss_pred             eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence            4465565 699999999999 6678898887433

MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=85.33  E-value=0.36  Score=37.12  Aligned_cols=52  Identities=27%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          133 EQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKE  188 (213)
Q Consensus       133 ~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~  188 (213)
                      ......+..|+..+.+    .+..|+.+.+.++..|+.+++.++..|..++..-..
T Consensus        63 ~~l~~~l~~aq~~a~~----~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~  114 (131)
T PF05103_consen   63 ESLQRALIQAQETADE----IKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLRE  114 (131)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHHHhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444443    444444455666777777777777766666655543

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>PRK15322 invasion protein OrgB; Provisional

Probab=84.90  E-value=23  Score=30.16  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK  208 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K  208 (213)
                      -+...-.+..+++|++++.+|+.+|..+++..+.....++-.+--.........--.+.+....++..++.+-+..+.+.
T Consensus         8 l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~Gl~qa~~~la~~~a~~~~l~~~l~~~ie~~~r~lls~   87 (210)
T PRK15322          8 LERYFSAERLEQQARRRAKRILRQAEEEAETLRMYAYQEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQIYARELFSA   87 (210)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677888999999999999999999988888888777666333333333333444555667777777766665554


Q ss_pred             hc
Q 028133          209 VL  210 (213)
Q Consensus       209 iL  210 (213)
                      .|
T Consensus        88 ~L   89 (210)
T PRK15322         88 AV   89 (210)
T ss_pred             Hc
Confidence            44

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=84.85  E-value=18  Score=30.26  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133          177 QEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV  212 (213)
Q Consensus       177 ~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~  212 (213)
                      ......+..........+.+++.+|+..+++||++.
T Consensus        68 ~~~~~~l~~~~~~~~~~~~~~lv~La~~iarkvi~~  103 (199)
T PRK06032         68 AQAAAGLLAALAAVEHEMETEAADLALAVARKIAGA  103 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666777777889999999999999999863

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=84.40  E-value=2.9  Score=31.52  Aligned_cols=40  Identities=28%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133          172 IEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP  211 (213)
Q Consensus       172 ~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~  211 (213)
                      ....+.....+++........+++.++.+++..+++||++
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~vi~   42 (128)
T PF02108_consen    3 AQAELEQLLEELEEALQELLEELEQELVELALAIAEKVIG   42 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566667777788888888999999999999999986

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK01919 tatB sec-independent translocase; Provisional

Probab=84.11  E-value=21  Score=29.46  Aligned_cols=7  Identities=29%  Similarity=0.781  Sum_probs=4.4

Q ss_pred             cCCccch
Q 028133           74 LFDFNLT   80 (213)
Q Consensus        74 l~~~n~t   80 (213)
                      ||||.|+
T Consensus         1 MFdIG~~    7 (169)
T PRK01919          1 MIDLGLS    7 (169)
T ss_pred             CCCCcHH
Confidence            5776654

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=83.57  E-value=29  Score=32.67  Aligned_cols=15  Identities=13%  Similarity=0.386  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 028133          103 LGNFMDERDNAIKEK  117 (213)
Q Consensus       103 I~~~Ld~R~~~I~~~  117 (213)
                      +.++|.+++..|..+
T Consensus       201 ldevLt~~R~~I~~~  215 (419)
T PRK10930        201 MDRILTEGRTVIRSD  215 (419)
T ss_pred             HHHHhhccHHHHHHH
Confidence            346676655445433

>TIGR01933 hflK HflK protein

Probab=82.75  E-value=29  Score=29.81  Aligned_cols=6  Identities=0%  Similarity=0.495  Sum_probs=2.9

Q ss_pred             HHHHHH
Q 028133          103 LGNFMD  108 (213)
Q Consensus       103 I~~~Ld  108 (213)
                      +..++.
T Consensus       105 l~eil~  110 (261)
T TIGR01933       105 MDDILT  110 (261)
T ss_pred             HHHHHH
Confidence            344555

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]

Probab=82.27  E-value=31  Score=29.51  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          130 QLEEQAAAVMRAARAEISAALTKMKKETQ  158 (213)
Q Consensus       130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      ....+...+++.|...++.|+..+...++
T Consensus        85 ~a~~ea~~il~~a~~~a~~v~~~a~~~a~  113 (212)
T COG3599          85 AAEAEADDILKRASAQAQRVFGKAQYKAD  113 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34444555555555555555555555544

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=82.16  E-value=19  Score=27.15  Aligned_cols=12  Identities=8%  Similarity=0.454  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHh
Q 028133           89 LVLMFALDKIYY  100 (213)
Q Consensus        89 lIL~~iL~kfl~  100 (213)
                      +++.++.+..+|
T Consensus        10 ~ll~~l~y~l~~   21 (105)
T PRK00888         10 ALLVWLQYSLWF   21 (105)
T ss_pred             HHHHHHHHHHhc
Confidence            333344444444

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=81.64  E-value=29  Score=29.84  Aligned_cols=7  Identities=29%  Similarity=0.610  Sum_probs=3.7

Q ss_pred             HHHHHHH
Q 028133          103 LGNFMDE  109 (213)
Q Consensus       103 I~~~Ld~  109 (213)
                      +.+++.+
T Consensus       132 ~~eil~~  138 (266)
T cd03404         132 LDDVLTE  138 (266)
T ss_pred             HHHHHHh
Confidence            4456655

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK09731 putative general secretion pathway protein YghD; Provisional

Probab=80.15  E-value=14  Score=30.75  Aligned_cols=34  Identities=6%  Similarity=0.263  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028133           81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAI  114 (213)
Q Consensus        81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I  114 (213)
                      -+..++.++++++++|..+|.|+.+..+.-+..+
T Consensus        38 ~ll~~~g~vL~l~i~Y~~iWqPl~~~~~~a~~~l   71 (178)
T PRK09731         38 GMLLAAVVFLFSVGYYVLIWQPLSERIEQQETML   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3455678888888889999999998665444444

>COG5521 Predicted integral membrane protein [Function unknown]

Probab=80.03  E-value=2.4  Score=37.09  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             hhhhhhhHHHHHHhhcCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHH
Q 028133           45 SALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKI   98 (213)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kf   98 (213)
                      ++||-+..+++||  ++.|++|+-+  =|+|.+|++.+..+=+|++++.+.+-|
T Consensus       214 asFkE~~~l~lnc--lalP~laa~a--lgff~qd~ttim~vqs~g~vLml~w~F  263 (275)
T COG5521         214 ASFKEAASLALNC--LALPALAAAA--LGFFHQDLTTIMMVQSCGVVLMLSWAF  263 (275)
T ss_pred             HhHHHHHHHHHHh--hhhHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHH
Confidence            4566666677777  7788988754  678999999888777777777766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
1b9u_A	34	Protein (ATP synthase); membrane protein, hydrolas	98.87
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	98.51
2khk_A	53	ATP synthase subunit B; F1FO ATP synthase, spectro	97.93
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	97.85
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.74
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	97.66
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	97.65
2cly_A	214	ATP synthase B chain, mitochondrial; mitochondrion	96.85
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	96.76
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	95.88
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	95.54
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	94.68
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	94.65
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	94.59
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	94.1
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	93.29
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	93.13
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	88.64
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.32
2oar_A	174	Large-conductance mechanosensitive channel; stretc	87.78
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	84.88
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	84.72
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.99

>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1

Probab=98.87  E-value=1.5e-09  Score=65.53  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 028133           75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMD  108 (213)
Q Consensus        75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld  108 (213)
                      |++|+|+++++++|++++++++||+|||+.+++|
T Consensus         1 m~~~~~l~~~~i~Flil~~~l~kf~~~Pi~~~l~   34 (34)
T 1b9u_A            1 MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIE   34 (34)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHC
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5788999999999999999999999999999874

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=98.51  E-value=1.1e-06  Score=59.29  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          137 AVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLD  195 (213)
Q Consensus       137 ~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~  195 (213)
                      ..|.+|+.++..|+++++.+++..+++++.+|+.++++++..++.+|+.++..+..+|+
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~Lr   60 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999886

>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}

Probab=97.93  E-value=2.6e-07  Score=60.57  Aligned_cols=50  Identities=16%  Similarity=0.321  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          105 NFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK  154 (213)
Q Consensus       105 ~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak  154 (213)
                      ++|++|++.|.+++++|+..+.+++.+..+|+..|.+|+.++..|+++++
T Consensus         2 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ea~~ii~~A~   51 (53)
T 2khk_A            2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN   51 (53)
T ss_dssp             CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999999999999999999999999887654

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=97.85  E-value=0.00018  Score=48.19  Aligned_cols=59  Identities=25%  Similarity=0.335  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLE  184 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~  184 (213)
                      ..+.+.+.++..++.+|+.++..++++++.+|+.+.++++..++.+++.++..+..+++
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~Lr   60 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35778899999999999999999999999999999999999999999999999998874

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.74  E-value=4.8e-06  Score=67.21  Aligned_cols=84  Identities=17%  Similarity=0.205  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          128 VKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVR  207 (213)
Q Consensus       128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~  207 (213)
                      .++++.+++.++.+|+.++++|+++++++++.+.++++.+++++++.....+...+..+.......++.++.+.++..+.
T Consensus        12 l~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~a~   91 (198)
T 2dm9_A           12 NKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVK   91 (198)
T ss_dssp             ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcc
Q 028133          208 KVLP  211 (213)
Q Consensus       208 KiL~  211 (213)
                      ++|.
T Consensus        92 ~~l~   95 (198)
T 2dm9_A           92 RRLE   95 (198)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=97.66  E-value=0.0012  Score=53.47  Aligned_cols=79  Identities=10%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ----EALANLERQKEDTIKSLDSQIAALSEE  204 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~----~A~~~I~~e~~~a~~eL~~ei~~lA~~  204 (213)
                      +++.++++.++.+|+.++.+|+++++++|+...+.++.++..+.+..+.    .++.+.+...-.++.++-+++.+-+..
T Consensus         9 ~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~   88 (187)
T 3v6i_A            9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVRE   88 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999999999999988888876644    444455555555555555555555444


Q ss_pred             HHH
Q 028133          205 IVR  207 (213)
Q Consensus       205 ia~  207 (213)
                      -..
T Consensus        89 ~L~   91 (187)
T 3v6i_A           89 ALE   91 (187)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=97.65  E-value=0.0088  Score=44.07  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALAN  182 (213)
Q Consensus       103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~  182 (213)
                      |.+-|.+|+......++++          +.+++..+..|..++..|+.++...++..-.+-......+..++.+.++..
T Consensus         7 llk~LAerE~~L~~~lE~A----------r~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~eara~   76 (105)
T 3v6i_B            7 LIKSLAEKEKQLLERLEAA----------KKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYRER   76 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777766666655          444444455555555555555555555555554555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133          183 LERQKEDTIKSLDSQIAALSEEIVRKVL  210 (213)
Q Consensus       183 I~~e~~~a~~eL~~ei~~lA~~ia~KiL  210 (213)
                      -+.+.+.....-...+..-+-.+.+.||
T Consensus        77 Aeaea~~v~~~A~~r~~~Av~~vLkeVL  104 (105)
T 3v6i_B           77 AEAEAKAVREKAMARLDEAVALVLKEVL  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence            4555444444444444444444444443

>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*

Probab=96.85  E-value=0.047  Score=45.49  Aligned_cols=48  Identities=21%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133           83 IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQ  130 (213)
Q Consensus        83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~  130 (213)
                      +.++.|+++++++.|++.+++.+++|++-++|.+.++++++..-+.-+
T Consensus        58 ~~~~~~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk  105 (214)
T 2cly_A           58 FSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQ  105 (214)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788888999999999999999999999999999998865544433

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=96.76  E-value=0.035  Score=46.22  Aligned_cols=51  Identities=14%  Similarity=0.166  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          136 AAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQ  186 (213)
Q Consensus       136 e~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e  186 (213)
                      ..++++|+.++++|..+|.++++.+..+++.+++..++...+....+++.+
T Consensus        22 ~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~   72 (233)
T 4efa_E           22 AFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS   72 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555666666666655555555555555555555554444444433

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=95.88  E-value=0.35  Score=38.65  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 028133          123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEV----EQKLAVGRKKIEAELQEALANL  183 (213)
Q Consensus       123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~----e~il~~Ak~e~e~~~~~A~~~I  183 (213)
                      +...-..+++++++.++++|+.++..+.+.+..+++.+.    ++++..++-+....+-.++.++
T Consensus        14 ~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~el   78 (187)
T 3v6i_A           14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEV   78 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677888888899999999888887766665555    4446666666666666666555

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=95.54  E-value=0.38  Score=39.88  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIE  173 (213)
Q Consensus       130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e  173 (213)
                      ++.++++++..+|+.+++.+..++..+++.......++..++++
T Consensus        27 EA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e   70 (233)
T 4efa_E           27 EAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAM   70 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555544444444444444444444433333

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=94.68  E-value=0.15  Score=33.01  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 028133          160 EVEQKLAVGRKKIEAELQEAL  180 (213)
Q Consensus       160 e~e~il~~Ak~e~e~~~~~A~  180 (213)
                      +.++++.+|+.+++.++..++
T Consensus        22 eA~~Il~eA~~eA~~Ii~eA~   42 (52)
T 2kk7_A           22 EANKIISEAEAEKAKILEKAK   42 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=94.65  E-value=0.23  Score=37.66  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          133 EQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKK  171 (213)
Q Consensus       133 ~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e  171 (213)
                      .++..++.+||.....-+.+|+.+|+.+.+....+-+++
T Consensus        20 k~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~e   58 (119)
T 4efa_G           20 KEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKE   58 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444433333

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=94.59  E-value=0.41  Score=36.22  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          113 AIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKK  171 (213)
Q Consensus       113 ~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e  171 (213)
                      .|+.-|+.=+++...+.+++..-...|.+|+.+|..-|+.-+.+-+.+......+....
T Consensus        11 GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~   69 (119)
T 4efa_G           11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGG   69 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45555544445666677777777788888888888888888888877777665554333

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=94.10  E-value=0.0084  Score=47.83  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEIS----AALTKMKKETQLEVEQKLAVGRKKIEAELQEALA  181 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea~----~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~  181 (213)
                      .-..+++++++.++.+|+.++.    .++++++.+++.+....+..+..+..+.+..++.
T Consensus        21 ~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~   80 (198)
T 2dm9_A           21 YILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQE   80 (198)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555566666666665553    4444455555555555555444444443333333

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=93.29  E-value=1.8  Score=31.81  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 028133          132 EEQAAAVMRAARAEISAALTKM  153 (213)
Q Consensus       132 ~~eae~~L~~Ar~ea~~Ii~~A  153 (213)
                      ..+...++.+||.++...+..+
T Consensus        15 E~~L~~~lE~Ar~eA~~~v~~A   36 (105)
T 3v6i_B           15 EKQLLERLEAAKKEAEERVKRA   36 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444433

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=93.13  E-value=0.29  Score=31.59  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          131 LEEQAAAVMRAARAEISAALTKMKKETQL  159 (213)
Q Consensus       131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~  159 (213)
                      .+.+++.++.+|+.++.+|+++++.+++.
T Consensus        19 A~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~   47 (52)
T 2kk7_A           19 AKAEANKIISEAEAEKAKILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555554443

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=88.64  E-value=0.53  Score=30.95  Aligned_cols=31  Identities=23%  Similarity=0.203  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          129 KQLEEQAAAVMRAARAEISAALTKMKKETQL  159 (213)
Q Consensus       129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~  159 (213)
                      .+...++..++++|..++.+|+.+|+.+|+.
T Consensus        22 KeAE~~A~~iVeeA~~ea~~ii~eAreeAke   52 (56)
T 2k6i_A           22 KLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK   52 (56)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.32  E-value=7.8  Score=36.13  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 028133          103 LGNFMDERDNAIKEKLNSVKDTS  125 (213)
Q Consensus       103 I~~~Ld~R~~~I~~~l~eAe~~~  125 (213)
                      |...|++-+..+...|++.++.-
T Consensus        51 LQglLdkqErDltkrINELKnqL   73 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSL   73 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHhhcCcHHHHHHHHHHHH
Confidence            34444444444444444443333

>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1

Probab=87.78  E-value=0.79  Score=36.83  Aligned_cols=30  Identities=17%  Similarity=0.440  Sum_probs=25.7

Q ss_pred             ccchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133           77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNF  106 (213)
Q Consensus        77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~  106 (213)
                      +++..|+ .+|||+|+.+++|.++.+|+.+.
T Consensus        90 i~yG~Fi~avInFlIIA~vIYFliVk~iNkl  120 (174)
T 2oar_A           90 IDLNVLLSAAINFFLIAFAVYFLVVLPYNTL  120 (174)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666676 59999999999999999999886

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=84.88  E-value=26  Score=33.01  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAAL  201 (213)
Q Consensus       131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~l  201 (213)
                      .+.+.+..+++=+..-++=+.+.++..+.+++.++.+-+.-++..++.-..-++..-+.-...|+.++.+|
T Consensus       509 ~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l  579 (592)
T 1f5n_A          509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDL  579 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444445555555556666666666655555555555444444444444445555555554

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=84.72  E-value=1.4  Score=28.96  Aligned_cols=20  Identities=10%  Similarity=0.257  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 028133          139 MRAARAEISAALTKMKKETQ  158 (213)
Q Consensus       139 L~~Ar~ea~~Ii~~Ak~eAe  158 (213)
                      +.+|..++.+++++|.++++
T Consensus        21 IKeAE~~A~~iVeeA~~ea~   40 (56)
T 2k6i_A           21 VKLAEEQAVKEIEEAKNRAE   40 (56)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34555666666655555443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.99  E-value=22  Score=33.11  Aligned_cols=73  Identities=11%  Similarity=0.205  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL  176 (213)
Q Consensus       103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~  176 (213)
                      ...-+.+|-++|++.+++.++...++.......-..|++-.....+.-+ ...+.-.+.++-+...+.+++..+
T Consensus        58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN-tynE~S~ELRRrIqyLKekVdnQl  130 (562)
T 3ghg_A           58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN-TYNRVSEDLRSRIEVLKRKVIEKV  130 (562)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH-HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777788888888777777776655555555444333332222 333333333444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	98.48
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	98.34

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=6.6e-07  Score=59.20  Aligned_cols=58  Identities=16%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          138 VMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLD  195 (213)
Q Consensus       138 ~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~  195 (213)
                      .|.+|+.++.+|+++|+..+...+++...+|+.+.++++..++.+|+.++..++.+|+
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLR   60 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566666666666666666666666666666666666666666666666666666664

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=2.3e-06  Score=56.47  Aligned_cols=59  Identities=25%  Similarity=0.335  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133          126 EEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLE  184 (213)
Q Consensus       126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~  184 (213)
                      +++.+.+.++..++.+|+.++.+|+++++.+|..+.++|+..|+.+++.++..++.+|+
T Consensus         2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLR   60 (61)
T d1l2pa_           2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999999999999999998875