Citrus Sinensis ID: 028194

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
cEEEcccccEEEEcccccHHHHHHHHHHHHcccccccHHcccccEEEEccccEEcccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEccEEEEcccccccccccccccccccccccEEEEEEEcccccccccc
cEEEEcccEEEEEcccccHHHHHHHHHHHcHcccccEEEccccccEEEEccEEEccccEccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccEEEEHHHEHcccccccccEccccccccccccccHHHccccEEccccccEEEEEEcccccccccccccccccEEEccEEEEcEEEEEcccccc
mqvlswrpralyfpnfasaEQCQSIIATAKKrlkpsqlalrqgetvestkgtrtssgtfisasedkTGILELIEHKIARatmlpqthgeAFNVLRYEIgqkydshydafnpaeygpqmSQRLASFLLYLSDveeggetmfpfengifldsgydykkciglkvkprrgdgllfyslfpngtidrtslhgscpvikgeKWVATKWIRDQEQHED
MQVLSWRPRALYFPNFASAEQCQSIIATAKKrlkpsqlalrqgetvestkgtrtssgtfisasedktGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNgtidrtslhgscpvikgekwvATKWIRDQEQHED
MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
****SWRPRALYFPNFASAEQCQSIIAT**************************************TGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR*******
MQVLSWRPRALYFPNFASAEQCQSIIATAKK********************TRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWI*DQE****
MQVLSWRPRALYFPNFASAEQCQSIIATAKKR***********************SGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQ*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
P16924516 Prolyl 4-hydroxylase subu yes no 0.849 0.348 0.301 2e-20
P54001534 Prolyl 4-hydroxylase subu yes no 0.849 0.337 0.297 3e-19
Q60715534 Prolyl 4-hydroxylase subu yes no 0.853 0.338 0.284 4e-19
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.853 0.338 0.279 2e-18
P13674534 Prolyl 4-hydroxylase subu yes no 0.853 0.338 0.279 2e-18
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.853 0.338 0.279 3e-18
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.849 0.337 0.284 5e-17
Q6W3F0542 Prolyl 4-hydroxylase subu no no 0.886 0.346 0.309 7e-17
Q75UG4544 Prolyl 4-hydroxylase subu no no 0.886 0.345 0.300 1e-16
Q20065539 Prolyl 4-hydroxylase subu yes no 0.877 0.345 0.279 2e-16
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function desciption
 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 32/212 (15%)

Query: 7   RPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVE-STKGTRTSSGTFISASED 65
           +PR + F +  S E+ +++   AK RL  S+  +   ET + +T   R S   ++S  E 
Sbjct: 316 KPRIVRFLDIISDEEIETVKELAKPRL--SRATVHDPETGKLTTAHYRVSKSAWLSGYE- 372

Query: 66  KTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYD--------AFNPAEYGPQ 117
            + ++  I  +I   T L  +  E   V  Y +G +Y+ H+D        AF     G  
Sbjct: 373 -SPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTG-- 429

Query: 118 MSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFP 177
              R+A++L Y+SDV  GG T+FP                +G  V P++G  + +Y+LFP
Sbjct: 430 --NRIATWLFYMSDVSAGGATVFP---------------EVGASVWPKKGTAVFWYNLFP 472

Query: 178 NGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ 209
           +G  D ++ H +CPV+ G KWV+ KW+ ++ Q
Sbjct: 473 SGEGDYSTRHAACPVLVGNKWVSNKWLHERGQ 504
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1 Back     alignment and function description
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2 SV=1 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
297798522288 oxidoreductase [Arabidopsis lyrata subsp 0.995 0.732 0.810 1e-102
225428938284 PREDICTED: prolyl 4-hydroxylase subunit 0.995 0.742 0.819 1e-101
147823227276 hypothetical protein VITISV_009065 [Viti 0.995 0.764 0.819 1e-101
255573113286 prolyl 4-hydroxylase alpha subunit, puta 0.990 0.734 0.814 1e-101
18418321288 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.995 0.732 0.805 1e-101
385137888288 oxygenase protein, partial [Arabidopsis 0.995 0.732 0.805 1e-101
255584898290 prolyl 4-hydroxylase alpha subunit, puta 0.995 0.727 0.805 1e-99
40809925286 prolyl 4-hydroxylase [Nicotiana tabacum] 0.995 0.737 0.810 9e-99
363807682293 uncharacterized protein LOC100775302 [Gl 0.995 0.720 0.791 2e-97
449448264294 PREDICTED: prolyl 4-hydroxylase subunit 0.995 0.717 0.777 4e-97
>gi|297798522|ref|XP_002867145.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312981|gb|EFH43404.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/211 (81%), Positives = 192/211 (90%)

Query: 1   MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFI 60
            QVLSWRPRA+YFPNFA+AEQCQ+II  AK  LKPS LALR+GET E+TKGTRTSSGTFI
Sbjct: 78  FQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKGETAENTKGTRTSSGTFI 137

Query: 61  SASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQ 120
           SASED TG L+ +E KIARATM+P++HGE+FN+LRYE+GQKYDSHYD FNP EYGPQ SQ
Sbjct: 138 SASEDSTGALDFVERKIARATMIPRSHGESFNILRYELGQKYDSHYDVFNPTEYGPQSSQ 197

Query: 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 180
           R+ASFLLYLSDVEEGGETMFPFENG  + +GYDYK+CIGLKVKPR+GDGLLFYS+FPNGT
Sbjct: 198 RIASFLLYLSDVEEGGETMFPFENGSNMGTGYDYKQCIGLKVKPRKGDGLLFYSVFPNGT 257

Query: 181 IDRTSLHGSCPVIKGEKWVATKWIRDQEQHE 211
           ID+TSLHGSCPV KGEKWVATKWIRDQ+Q E
Sbjct: 258 IDQTSLHGSCPVTKGEKWVATKWIRDQDQEE 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428938|ref|XP_002262952.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296083079|emb|CBI22483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147823227|emb|CAN70872.1| hypothetical protein VITISV_009065 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573113|ref|XP_002527486.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223533126|gb|EEF34884.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18418321|ref|NP_567941.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|17381226|gb|AAL36425.1| unknown protein [Arabidopsis thaliana] gi|20465827|gb|AAM20018.1| unknown protein [Arabidopsis thaliana] gi|21592377|gb|AAM64328.1| putative dioxygenase [Arabidopsis thaliana] gi|332660892|gb|AEE86292.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|385137888|gb|AFI41205.1| oxygenase protein, partial [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255584898|ref|XP_002533164.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223527036|gb|EEF29223.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|40809925|dbj|BAD07294.1| prolyl 4-hydroxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|363807682|ref|NP_001242420.1| uncharacterized protein LOC100775302 [Glycine max] gi|255641811|gb|ACU21174.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449448264|ref|XP_004141886.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.990 0.729 0.809 4.8e-94
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.948 0.733 0.651 2e-72
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.938 0.693 0.480 9.1e-45
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.957 0.702 0.462 3.9e-44
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.957 0.7 0.420 6.6e-42
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.929 0.684 0.461 1.2e-40
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.962 0.701 0.403 1.1e-39
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.929 0.661 0.447 3.4e-38
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.929 0.658 0.437 1.3e-36
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.952 0.713 0.400 3.6e-34
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 170/210 (80%), Positives = 191/210 (90%)

Query:     2 QVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFIS 61
             QVLSWRPRA+YFPNFA+AEQCQ+II  AK  LKPS LALR+GET E+TKGTRTSSGTFIS
Sbjct:    79 QVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKGETAENTKGTRTSSGTFIS 138

Query:    62 ASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQR 121
             ASE+ TG L+ +E KIARATM+P++HGE+FN+LRYE+GQKYDSHYD FNP EYGPQ SQR
Sbjct:   139 ASEESTGALDFVERKIARATMIPRSHGESFNILRYELGQKYDSHYDVFNPTEYGPQSSQR 198

Query:   122 LASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTI 181
             +ASFLLYLSDVEEGGETMFPFENG  +  GYDYK+CIGLKVKPR+GDGLLFYS+FPNGTI
Sbjct:   199 IASFLLYLSDVEEGGETMFPFENGSNMGIGYDYKQCIGLKVKPRKGDGLLFYSVFPNGTI 258

Query:   182 DRTSLHGSCPVIKGEKWVATKWIRDQEQHE 211
             D+TSLHGSCPV KGEKWVATKWIRDQ+Q E
Sbjct:   259 DQTSLHGSCPVTKGEKWVATKWIRDQDQEE 288
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.7__720__AT4G33910.1
annotation not avaliable (288 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 7e-51
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-41
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 1e-07
PRK05467226 PRK05467, PRK05467, Fe(II)-dependent oxygenase sup 1e-06
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-06
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  166 bits (422), Expect = 7e-51
 Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 8/209 (3%)

Query: 1   MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQ-GETVESTKGTRTSSGTF 59
           ++ +SW+PR   +  F S  +C  ++  AKK+++ S +A  + G++V S    RTSSG F
Sbjct: 47  VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSE--VRTSSGMF 104

Query: 60  ISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMS 119
           +   +D   ++  IE +IA  T LP+ + E   +LRYE GQKY+ H+D F+         
Sbjct: 105 LDKRQDP--VVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGG 162

Query: 120 QRLASFLLYLSDVEEGGETMFPFENGIFLDSGYD-YKKCI--GLKVKPRRGDGLLFYSLF 176
            R A+ L+YLS V++GGET+FP   G       D + +C   GL VKP +GD +LF+SL 
Sbjct: 163 HRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLH 222

Query: 177 PNGTIDRTSLHGSCPVIKGEKWVATKWIR 205
            +G  D  SLHGSCPVI+GEKW A KWI 
Sbjct: 223 IDGVPDPLSLHGSCPVIEGEKWSAPKWIH 251

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|235483 PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 100.0
PHA02813 354 hypothetical protein; Provisional 99.8
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.8
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.76
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.76
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 99.38
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.97
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.84
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.8
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.74
KOG3844 476 consensus Predicted component of NuA3 histone acet 98.23
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.19
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 98.12
PHA02866 333 Hypothetical protein; Provisional 98.1
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.89
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.8
TIGR02466201 conserved hypothetical protein. This family consis 97.73
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.61
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 97.51
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 97.4
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 96.77
PHA02923 315 hypothetical protein; Provisional 96.05
KOG3200224 consensus Uncharacterized conserved protein [Funct 94.84
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 94.75
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 94.43
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 94.43
COG3826236 Uncharacterized protein conserved in bacteria [Fun 93.86
PLN02485329 oxidoreductase 93.81
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 93.48
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 92.7
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 92.55
PLN02904357 oxidoreductase 92.33
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 92.16
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 92.14
PLN02216357 protein SRG1 92.14
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 92.1
PLN02947374 oxidoreductase 92.1
PLN02997325 flavonol synthase 92.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 91.63
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 91.57
PLN02254358 gibberellin 3-beta-dioxygenase 91.48
PLN02403303 aminocyclopropanecarboxylate oxidase 91.44
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 91.34
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 91.32
PHA02985 271 hypothetical protein; Provisional 91.15
PLN02365300 2-oxoglutarate-dependent dioxygenase 91.15
PLN02276361 gibberellin 20-oxidase 90.96
PLN02704335 flavonol synthase 89.59
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 89.03
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 88.17
PF14033501 DUF4246: Protein of unknown function (DUF4246) 87.66
PTZ00273320 oxidase reductase; Provisional 87.44
PLN02393362 leucoanthocyanidin dioxygenase like protein 87.33
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 87.04
PLN02156335 gibberellin 2-beta-dioxygenase 86.95
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.93
KOG4459471 consensus Membrane-associated proteoglycan Lepreca 83.33
PF02668258 TauD: Taurine catabolism dioxygenase TauD, TfdA fa 82.65
PF10014195 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018 82.46
COG4340226 Uncharacterized protein conserved in bacteria [Fun 82.13
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-57  Score=379.84  Aligned_cols=205  Identities=40%  Similarity=0.744  Sum_probs=178.0

Q ss_pred             CeEeeccccEEEecCCCCHHHHHHHHHHhccCceecEEeec-CCceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHH
Q 028194            1 MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALR-QGETVESTKGTRTSSGTFISASEDKTGILELIEHKIAR   79 (212)
Q Consensus         1 ~e~ls~~P~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~-~g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~   79 (212)
                      ||+||++|+|++|+||||++||++||+++++.++++.+... .|++  ..+++|+|.++|+...+  ++++++|++||++
T Consensus        47 ve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~--~~s~~RTS~~~~l~~~~--dpvv~~I~~Ria~  122 (310)
T PLN00052         47 VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKS--VMSEVRTSSGMFLDKRQ--DPVVSRIEERIAA  122 (310)
T ss_pred             EEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcc--ccCCCEEecceeecCCC--CHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999988753 2332  45679999999998654  3799999999999


Q ss_pred             hhCCCCCCCCcceEEecCCCcccccccccCCCCCCCCCCCcceEEEEEeeccccCCccccCCCCCCccc-CCCCCcccc-
Q 028194           80 ATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFL-DSGYDYKKC-  157 (212)
Q Consensus        80 ~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~-~~~~~~~~~-  157 (212)
                      ++++|..+.|++||+||++||+|++|+|++........+++|++|+|+||||+++||||+||....... ..+..+++| 
T Consensus       123 ~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~  202 (310)
T PLN00052        123 WTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECA  202 (310)
T ss_pred             HhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhhhh
Confidence            999999999999999999999999999998643322357899999999999999999999998742211 122345555 


Q ss_pred             -cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccccccc
Q 028194          158 -IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ  209 (212)
Q Consensus       158 -~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~~~  209 (212)
                       .+++|+|++|+||||+|++++|..|+.++|+||||++|+||++|+|+|.++.
T Consensus       203 ~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~  255 (310)
T PLN00052        203 HKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSY  255 (310)
T ss_pred             cCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccc
Confidence             4899999999999999999999999999999999999999999999998765

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PHA02985 hypothetical protein; Provisional Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PF14033 DUF4246: Protein of unknown function (DUF4246) Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown] Back     alignment and domain information
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases Back     alignment and domain information
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 9e-44
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 9e-44
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-43
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 7e-42
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 4e-30
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 7/205 (3%)
Query: 4   LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 62
           LSW PRA    NF S E+C  I+  A+ K +K S +    G++V+S    RTS+GT+ + 
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 63  SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQMS-Q 120
            ED   ++  IE ++A+ TM+P  + E   VL Y  GQKY+ HYD F +P   GP+   Q
Sbjct: 83  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 121 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 180
           R+ + L+YL+ VEEGGET+ P         G+      GL VKP +GD L+FYSL P+G+
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 200
Query: 181 IDRTSLHGSCPVIKGEKWVATKWIR 205
            D  SLHGSCP +KG+KW ATKWI 
Sbjct: 201 NDPASLHGSCPTLKGDKWSATKWIH 225
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 8e-82
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 7e-74
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-11
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  242 bits (618), Expect = 8e-82
 Identities = 87/210 (41%), Positives = 122/210 (58%), Gaps = 5/210 (2%)

Query: 1   MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFI 60
           +  LSW PRA    NF S E+C  I+  A+ ++  S +   +      ++  RTS+GT+ 
Sbjct: 13  VVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE-IRTSTGTWF 71

Query: 61  SASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQ-M 118
           +  ED   ++  IE ++A+ TM+P  + E   VL Y  GQKY+ HYD F +P   GP+  
Sbjct: 72  AKGEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHG 129

Query: 119 SQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPN 178
            QR+ + L+YL+ VEEGGET+ P         G+      GL VKP +GD L+FYSL P+
Sbjct: 130 GQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPD 189

Query: 179 GTIDRTSLHGSCPVIKGEKWVATKWIRDQE 208
           G+ D  SLHGSCP +KG+KW ATKWI    
Sbjct: 190 GSNDPASLHGSCPTLKGDKWSATKWIHVAP 219
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.95
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.48
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.94
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 98.06
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.97
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.93
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.57
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.53
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.44
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 97.29
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 97.02
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.93
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 96.78
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 95.81
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 93.53
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 91.07
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 91.07
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 87.82
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 86.54
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 84.15
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 80.4
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1e-53  Score=346.04  Aligned_cols=203  Identities=42%  Similarity=0.778  Sum_probs=175.6

Q ss_pred             CeEeeccccEEEecCCCCHHHHHHHHHHhccCceecEEeecC-CceeeeccceeeeceeeeCCCCChhHHHHHHHHHHHH
Q 028194            1 MQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQ-GETVESTKGTRTSSGTFISASEDKTGILELIEHKIAR   79 (212)
Q Consensus         1 ~e~ls~~P~i~~i~~fLs~~ec~~li~~~~~~~~~s~v~~~~-g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~l~~ri~~   79 (212)
                      ||+||++|+|++++||||++||++||+++++.++++.+.... |.  ...+.+|+|..+|+....  ++++++|++||.+
T Consensus        13 ~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~--~~~~~~R~s~~~~l~~~~--~~~~~~i~~ri~~   88 (224)
T 2jig_A           13 VVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGK--SVDSEIRTSTGTWFAKGE--DSVISKIEKRVAQ   88 (224)
T ss_dssp             EEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTE--EEECSSBCSEEEECCTTC--SHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCc--ccccCCEEEeeeEecCCC--CHHHHHHHHHHHH
Confidence            589999999999999999999999999999989999887643 33  245679999999998654  3689999999999


Q ss_pred             hhCCCCCCCCcceEEecCCCcccccccccCCCCCCC--CCCCcceEEEEEeeccccCCccccCCCCCCcccCCCCCcccc
Q 028194           80 ATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG--PQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKC  157 (212)
Q Consensus        80 ~~g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~  157 (212)
                      ++++|...+|++||+||++|++|++|+|++......  ..+++|++|+|+||||+++||||+||.....  ..++.+.+|
T Consensus        89 ~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~--~~~~~~~~c  166 (224)
T 2jig_A           89 VTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQK--VTGDGWSEC  166 (224)
T ss_dssp             HHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSC--CCSTTSCTT
T ss_pred             HhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcccc--ccccccccc
Confidence            999999999999999999999999999998643211  2357999999999999999999999986522  223344555


Q ss_pred             --cceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCccceEEEEEeccccccc
Q 028194          158 --IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ  209 (212)
Q Consensus       158 --~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~~G~K~~~~~W~~~~~~  209 (212)
                        .+++|+|++|+||||+|++++|+.|++++|+||||++|+||++++|++.++.
T Consensus       167 ~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~  220 (224)
T 2jig_A          167 AKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPI  220 (224)
T ss_dssp             GGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCC
T ss_pred             ccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCc
Confidence              4799999999999999999999999999999999999999999999998763
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 98.12
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 98.09
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 97.54
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 97.47
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 94.15
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 93.28
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 90.98
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 89.31
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=98.12  E-value=3.1e-06  Score=68.07  Aligned_cols=181  Identities=14%  Similarity=0.101  Sum_probs=91.7

Q ss_pred             cEEEecCCCCHHHHHHHHHHhccCcee-cEEeecCCceeeeccceeeeceeeeCCCCChhHHH------HHHHHHHHHhh
Q 028194            9 RALYFPNFASAEQCQSIIATAKKRLKP-SQLALRQGETVESTKGTRTSSGTFISASEDKTGIL------ELIEHKIARAT   81 (212)
Q Consensus         9 ~i~~i~~fLs~~ec~~li~~~~~~~~~-s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~~------~~l~~ri~~~~   81 (212)
                      ..+++.|+||++|++++++..+..+.. .................+. ...++..     +.+      ..|...++.++
T Consensus        17 Gyl~i~~~~s~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~l~~~p~il~~v~~ll   90 (308)
T d2fcta1          17 GFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIAN-YDRHLDD-----DFLASHICRPEICDRVESIL   90 (308)
T ss_dssp             SEEEEEESSCHHHHHHHHHHHHHHHTCCTTCSCCCCCC----CGGGG-BCGGGTC-----HHHHHHTTCHHHHHHHHHHH
T ss_pred             CEEECcCccCHHHHHHHHHHHHHHHhhcccccccccccccCccceee-ehhhhcC-----HHHHHhhcCchhhhHHHHhh
Confidence            346889999999999998776431111 0000000000000000110 1111111     111      23445566677


Q ss_pred             CCCCCCCCcceEEecCCCcccccccccCCCCCCC--------CCCCcceEEEEEeecccc-CCccccC-CCCCCccc-C-
Q 028194           82 MLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG--------PQMSQRLASFLLYLSDVE-EGGETMF-PFENGIFL-D-  149 (212)
Q Consensus        82 g~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~-~-  149 (212)
                      |-+.......-+.+...+..+.||.|........        .......+|+.|+|.|+. +.|.+.| |....... + 
T Consensus        91 G~~~~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~viPGSHk~~~~~~  170 (308)
T d2fcta1          91 GPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYDE  170 (308)
T ss_dssp             CSCEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEETTCTTSCCBCT
T ss_pred             cccceeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEEeeCCccCCcccc
Confidence            7433222122344555556788999986432110        112356899999999984 4565554 43321100 0 


Q ss_pred             -----------C---------C---C-----------CcccccceEEeeccCCEEEEeeeCCCCCcCCCCcccccCCc--
Q 028194          150 -----------S---------G---Y-----------DYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI--  193 (212)
Q Consensus       150 -----------~---------~---~-----------~~~~~~~~~v~P~~G~av~f~n~~~~g~~d~~~~H~~~pV~--  193 (212)
                                 .         +   .           ...+...+.+.-++|+++||.         ..++|++.|-.  
T Consensus       171 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lkaGdvlif~---------~~l~HgS~pN~~~  241 (308)
T d2fcta1         171 TKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPHSGE  241 (308)
T ss_dssp             TSCCCCCTTTCSSCEETTEEEEBTTBCGGGGBSSTTCCCCGGGCEEECBCTTEEEEEE---------TTSEEEECCBCSS
T ss_pred             ccccccCcccccccccccccccccccccccccccccccccccceEEEeeCCCeEEEEC---------CCccccCCCCCCC
Confidence                       0         0   0           000112356677899999996         49999999975  


Q ss_pred             cc-eEEEEEecc
Q 028194          194 KG-EKWVATKWI  204 (212)
Q Consensus       194 ~G-~K~~~~~W~  204 (212)
                      +. .|++++..+
T Consensus       242 S~~~R~~~~~rY  253 (308)
T d2fcta1         242 SQEMRMGFASRY  253 (308)
T ss_dssp             SSSCEEEEEEEE
T ss_pred             CCCceEEEEEEE
Confidence            23 476665544
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure