Citrus Sinensis ID: 028227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDRRSSRHGSKNGPQRIS
Secondary Structure (PSIPRED)
ccEEEccccEEcccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccEEccHHHHHHHHccEEEEcccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEccccccHcHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEEcccEEEcHHHHHHHHccEEEEEEcHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
meiiagttattmatqsitpkglkfdppfsllhsqsyapirTSLQYSiisrkprittrsiaddttsntvtkvaaedpsfavKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYyyfdsdslvfeaaggesAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVcagngavqssanLYEISGTFKTWNIIMdrrssrhgskngpqris
Flexible Loop (DISEMBL)
meiiagttattmatqsitpKGLKFDPPFSLLHSQSYAPIRTSlqysiisrkprittrsiaddttsntvtkvaaedpsfavkKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMdrrssrhgskngpqris
Low Complexity Region (SEG)
MEiiagttattmatqsitPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDRRSSRHGSKNGPQRIS
Disordered region (IsUnstruct)
***********************F**PFSLLHSQSYAPIRTSLQYSIIS*******************************************GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA**************************QLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIM*****************
Disordered Region (DISOPRED)
*****************************************************************************************ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDRRS*************
Disordered Region (DISEMBL)
MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG********************TEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDRRS*************
Disordered Region (DISPRO)
MEIIAGTTATTMATQSITPKGLKFDPPFSL**S****************************************EDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDRRSSRH**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDRRSSRHGSKNGPQRIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9LW20	280	Probable inactive shikima	yes	no	0.877	0.664	0.494	4e-43
Q5NTH3	307	Shikimate kinase 2, chlor	no	no	0.665	0.459	0.350	4e-17
Q00497	300	Shikimate kinase, chlorop	N/A	no	0.646	0.456	0.361	7e-17
Q7X7H9	287	Shikimate kinase 3, chlor	no	no	0.632	0.466	0.384	9e-17
Q5NTH4	308	Shikimate kinase 1, chlor	no	no	0.632	0.435	0.347	5e-16
Q8GY88	300	Shikimate kinase 2, chlor	no	no	0.528	0.373	0.389	8e-14
Q9SJ05	303	Shikimate kinase 1, chlor	no	no	0.528	0.369	0.366	1e-13
Q2JKT7	187	Shikimate kinase OS=Synec	yes	no	0.471	0.534	0.405	2e-13
A5GQN5	195	Shikimate kinase OS=Synec	yes	no	0.490	0.533	0.380	2e-13
Q5N4D3	190	Shikimate kinase OS=Synec	yes	no	0.490	0.547	0.390	2e-13

>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 128/192 (66%), Gaps = 6/192 (3%)

Query: 1   MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRIT-TRSI 59
           MEI + + + T+      P+ L    P +   +    P+ +S    +IS   RI  +RS+
Sbjct: 1   MEIFSASASLTLT--GFVPRLLPLLSPQA--RTTLCKPLLSSSSTRLISCHSRIAPSRSL 56

Query: 60  ADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119
           AD + S  ++ V   DP   VK+KA DI+ ELKG S+FLVG+NN+IKT+ GK LA+ALRY
Sbjct: 57  ADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRY 115

Query: 120 YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSA 179
           YYFDSD+L+ EAAGG  +A+A +E+DEK +Q++ETEVLKQLSSMGRLVVCAG+GAVQS  
Sbjct: 116 YYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLR 175

Query: 180 NLYEISGTFKTW 191
           NL  +      W
Sbjct: 176 NLALLRHGISIW 187

Required for chloroplast biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SK2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 10/151 (6%)

Query: 62  DTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY 121
           D+  N+V      D +  +K+K+ ++   L G  ++LVGM  + K+ + K LA+ L Y +
Sbjct: 69  DSLHNSV------DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSF 122

Query: 122 FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181
           FDSD LV +A G  S A+ F+E  E  ++  E+ VL+ LSSM RLVV  G GAV    N 
Sbjct: 123 FDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNW 182

Query: 182 YEISGTFKTW-NIIMD---RRSSRHGSKNGP 208
             +      W ++ +D   RR ++ G+ + P
Sbjct: 183 KYMKKGLSVWLDVPLDALARRIAQVGTASRP 213

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1 SV=1

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 72  AAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131
           A+ D    +K KA ++   L G  V+LVGM    KT +G+ LA+ L Y +FD D L+ +A
Sbjct: 83  ASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQA 142

Query: 132 AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
            GG + A+ F    E  ++  ETEVL +LS M RLVV  G GAV    N   +      W
Sbjct: 143 VGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVW 202

Query: 192 NII----MDRRSSRHGSKNGP 208
             +    + +R +  G+K+ P
Sbjct: 203 LDVPLEALAKRITTEGTKSRP 223

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=SK3 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 75  DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
           D +  +K+KA D+   L    ++LVGM  + KT +GK LA+ L Y +FDSD LV +A G 
Sbjct: 73  DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132

Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
            S A+ F+   E  ++  E+EVL+ LSSM RLVV  G GAV    N   +      W ++
Sbjct: 133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192

Query: 194 IMD---RRSSRHGSKNGP 208
            +D   RR +  G+ + P
Sbjct: 193 PLDALARRIAAVGTASRP 210

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=SK1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 75  DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
           D +  +K+K+ ++   L G  ++LVGM  + K+ +GK +++ L Y +FDSD LV +A G 
Sbjct: 78  DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137

Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
            S A+ F+   E  ++  E+ VL+ LSSM RLVV  G GAV    N   +      W ++
Sbjct: 138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197

Query: 194 IMD---RRSSRHGSKNGP 208
            +D   RR ++ G+ + P
Sbjct: 198 PLDALARRIAKVGTASRP 215

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +KKKA ++   L G S++LVGM  + KT +GK +A +L Y +FD D+L+ +A  G S A+
Sbjct: 85  LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 144

Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLYEISGTFKTW 191
            F    E  +++ ETE LK+LS M  ++VV  G GAV    N   +      W
Sbjct: 145 IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIW 197

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%)

Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +K+KA ++   L G S++LVGM  + KT +GK ++  L Y +FD D+L+ +A  G S A+
Sbjct: 89  LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 148

Query: 140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
            F    E  ++  ET+ LK+LSS  ++VV  G GAV    N   +      W
Sbjct: 149 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIW 200

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=aroK PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 91  LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
           L+G +V+L+GM  + K+ +G  LA  LR+ +FD+D LV E  GG S A+ F E  E  ++
Sbjct: 10  LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLV-EQVGGSSIAQIFAEHGEAYFR 68

Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
             ET+VL QLSS  RLV+  G G V    N   +      W
Sbjct: 69  DLETQVLAQLSSYTRLVIATGGGIVLRPKNWSYLHHGLTVW 109

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|A5GQN5|AROK_SYNR3 Shikimate kinase OS=Synechococcus sp. (strain RCC307) GN=aroK PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 1/105 (0%)

Query: 87  ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
           +   L+GT+++LVGM  + K+ +G  LA AL Y + D+D+++ +AAG  S  + F    E
Sbjct: 10  LGERLQGTNLYLVGMMGSGKSTVGPLLAKALGYRFLDADAVISQAAGC-SIPEIFERDGE 68

Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
           +G++Q E +VL+QLS    LVV  G G V   AN  E+      W
Sbjct: 69  EGFRQLERQVLQQLSQWHSLVVATGGGIVTVPANWGELRQGVVIW 113

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain RCC307) (taxid: 316278)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 87  ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
           + T L G  +FLVG+  + KT +GK LA++L Y Y D+DSL+ E   G S  + F    E
Sbjct: 3   LVTALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGE 61

Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
            G++Q ET+VL++++S  RLVV  G G V    N   +      W
Sbjct: 62  AGFRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIW 106

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
449464238	307	PREDICTED: shikimate kinase, chloroplast	0.702	0.485	0.613	1e-44
224129236	286	shikimate kinase [Populus trichocarpa] g	0.693	0.513	0.604	3e-43
225451543	305	PREDICTED: shikimate kinase, chloroplast	0.801	0.557	0.537	9e-43
388510864	280	unknown [Lotus japonicus]	0.712	0.539	0.579	5e-42
255543635	292	protein with unknown function [Ricinus c	0.778	0.565	0.562	6e-42
356498875	280	PREDICTED: shikimate kinase, chloroplast	0.617	0.467	0.656	9e-42
30688547	280	shikimate kinase like 1 [Arabidopsis tha	0.877	0.664	0.494	2e-41
297818234	280	shikimate kinase family protein [Arabido	0.735	0.557	0.559	4e-41
358249076	289	uncharacterized protein LOC100781076 [Gl	0.622	0.456	0.649	1e-40
255631169	230	unknown [Glycine max]	0.613	0.565	0.634	1e-38

>gi|449464238|ref|XP_004149836.1| PREDICTED: shikimate kinase, chloroplastic-like [Cucumis sativus] gi|449522321|ref|XP_004168175.1| PREDICTED: shikimate kinase, chloroplastic-like [Cucumis sativus]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 112/150 (74%), Gaps = 1/150 (0%)

Query: 43  LQYSIISRKPRITTRSIADDTTS-NTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGM 101
           +Q S I R+  + +  +A D T+ N   KV  +D S  VKKKA D++ ELKGTS+FLVG+
Sbjct: 56  IQSSAIRRRRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLVGI 115

Query: 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS 161
           N++IKT LGK LAD LRYYYFDSDSLV E +GGE+AAK +++SDEKG+Q  ETEVLKQLS
Sbjct: 116 NSSIKTKLGKLLADVLRYYYFDSDSLVVEVSGGEAAAKLYKQSDEKGFQAFETEVLKQLS 175

Query: 162 SMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
           SMGRLVVCAGNGAVQSS NL  +      W
Sbjct: 176 SMGRLVVCAGNGAVQSSTNLALLRHGITLW 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129236|ref|XP_002328924.1| shikimate kinase [Populus trichocarpa] gi|222839354|gb|EEE77691.1| shikimate kinase [Populus trichocarpa]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 2/149 (1%)

Query: 44  QYSIISRKPRIT-TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMN 102
           ++ ++SR   +T T S+ ++TT++T TKVA  D S  VKK+AAD+S ELKGTS+FL+GM 
Sbjct: 42  KFPLVSRPTSLTATCSLPNETTTST-TKVAGADTSLQVKKRAADLSPELKGTSIFLLGMR 100

Query: 103 NAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS 162
             +KT+LGK LADALRYY+F+SDSLV EAAGGE AA++ +E DEKG++++ETEVLKQL+S
Sbjct: 101 GPLKTNLGKLLADALRYYFFNSDSLVEEAAGGEFAARSLKERDEKGFRESETEVLKQLTS 160

Query: 163 MGRLVVCAGNGAVQSSANLYEISGTFKTW 191
           MGRLVVCAG+GAVQSS NL  +      W
Sbjct: 161 MGRLVVCAGDGAVQSSTNLGLLRHGISLW 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451543|ref|XP_002273840.1| PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera] gi|296082301|emb|CBI21306.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 122/188 (64%), Gaps = 18/188 (9%)

Query: 15  QSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRI-----------TTRSIADDT 63
           Q +TP+      P SLL  ++  P R  L   + S  P +            T S+ D  
Sbjct: 18  QVVTPRF-----PRSLL--EAPKPKRHPLHQLLPSLCPCVPPLTSSPKSLSITFSLPDGA 70

Query: 64  TSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123
           +S + TKV   D S AVKKKA +IS  LKGTS+FLVGMN+ IKT++GK LADALRYY+FD
Sbjct: 71  SSISATKVVDVDLSLAVKKKAMEISPVLKGTSIFLVGMNSTIKTNVGKLLADALRYYHFD 130

Query: 124 SDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYE 183
           SDSLV EA GGESAAK+ +E DEKG+  +ETEVLKQLSSMGRLVVCAG+G VQSS NL  
Sbjct: 131 SDSLVEEACGGESAAKSLKEQDEKGFHDSETEVLKQLSSMGRLVVCAGDGLVQSSTNLAL 190

Query: 184 ISGTFKTW 191
           +      W
Sbjct: 191 LRHGISIW 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510864|gb|AFK43498.1| unknown [Lotus japonicus]

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 113/164 (68%), Gaps = 13/164 (7%)

Query: 28  FSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADI 87
           F  LH++        LQ+    R P IT  SI      ++V+ V A D S AVKKKAAD+
Sbjct: 37  FPTLHARP-----NPLQFR---RPPPITNCSIP-----SSVSNVGATDLSLAVKKKAADV 83

Query: 88  STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK 147
           S EL+GTS+FLVGM  ++KT LGK L +ALRYYYFDSDSLV EA GG SAA + R+SDEK
Sbjct: 84  SPELRGTSIFLVGMKGSLKTSLGKLLVEALRYYYFDSDSLVEEALGGVSAANSVRQSDEK 143

Query: 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
           G+ ++ETEVLKQLSSMGRLVVCAGNGAVQS  NL  +      W
Sbjct: 144 GFSESETEVLKQLSSMGRLVVCAGNGAVQSKTNLALLRHGISLW 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543635|ref|XP_002512880.1| protein with unknown function [Ricinus communis] gi|223547891|gb|EEF49383.1| protein with unknown function [Ricinus communis]

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 120/167 (71%), Gaps = 2/167 (1%)

Query: 27  PFSLLH--SQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKA 84
           P  LLH  +QS     T +++     +P ++T     D T+ + T+V   D S A+KK+A
Sbjct: 31  PSCLLHIRAQSSHSFSTLIKHKSQFYRPSLSTTCSLSDETTTSTTEVTVLDSSLALKKRA 90

Query: 85  ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRES 144
           ADIS ELKGTS+FLVGM +++KT LGK LAD+LRYYYFDSDSLV E A G SAAK+F+E+
Sbjct: 91  ADISPELKGTSIFLVGMRSSMKTSLGKLLADSLRYYYFDSDSLVEEVASGASAAKSFKET 150

Query: 145 DEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
           DEKG++++ETEVLKQLSSMGRLVVCAG+GAVQS  NL  +      W
Sbjct: 151 DEKGFRESETEVLKQLSSMGRLVVCAGDGAVQSFTNLALLRHGISLW 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498875|ref|XP_003518273.1| PREDICTED: shikimate kinase, chloroplastic [Glycine max]

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 106/134 (79%), Gaps = 3/134 (2%)

Query: 58  SIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117
           S++D T S+++    A D S AVKKKAA++S+ELKGTS+FLVG+ +++KT LGK LADAL
Sbjct: 48  SVSDGTVSSSL---GATDSSLAVKKKAAEVSSELKGTSIFLVGLKSSLKTSLGKLLADAL 104

Query: 118 RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQS 177
           RYYYFDSDSLV EA GG  AAK+FRESDEKG+ ++ETEVLKQLSSMGRLVVCAGNG V S
Sbjct: 105 RYYYFDSDSLVEEAVGGALAAKSFRESDEKGFYESETEVLKQLSSMGRLVVCAGNGTVTS 164

Query: 178 SANLYEISGTFKTW 191
           S NL  +      W
Sbjct: 165 STNLALLRHGISLW 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688547|ref|NP_189325.2| shikimate kinase like 1 [Arabidopsis thaliana] gi|186510473|ref|NP_001118711.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|186510475|ref|NP_001118712.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|75274423|sp|Q9LW20.1|SKL1_ARATH RecName: Full=Probable inactive shikimate kinase like 1, chloroplastic; Short=AtSKL1; Flags: Precursor gi|9279680|dbj|BAB01237.1| unnamed protein product [Arabidopsis thaliana] gi|45752658|gb|AAS76227.1| At3g26900 [Arabidopsis thaliana] gi|46402442|gb|AAS92323.1| At3g26900 [Arabidopsis thaliana] gi|227202866|dbj|BAH56906.1| AT3G26900 [Arabidopsis thaliana] gi|332643714|gb|AEE77235.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|332643715|gb|AEE77236.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|332643716|gb|AEE77237.1| shikimate kinase like 1 [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 128/192 (66%), Gaps = 6/192 (3%)

Query: 1   MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRIT-TRSI 59
           MEI + + + T+      P+ L    P +   +    P+ +S    +IS   RI  +RS+
Sbjct: 1   MEIFSASASLTLT--GFVPRLLPLLSPQA--RTTLCKPLLSSSSTRLISCHSRIAPSRSL 56

Query: 60  ADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119
           AD + S  ++ V   DP   VK+KA DI+ ELKG S+FLVG+NN+IKT+ GK LA+ALRY
Sbjct: 57  ADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRY 115

Query: 120 YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSA 179
           YYFDSD+L+ EAAGG  +A+A +E+DEK +Q++ETEVLKQLSSMGRLVVCAG+GAVQS  
Sbjct: 116 YYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLR 175

Query: 180 NLYEISGTFKTW 191
           NL  +      W
Sbjct: 176 NLALLRHGISIW 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818234|ref|XP_002877000.1| shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322838|gb|EFH53259.1| shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 3/159 (1%)

Query: 35  SYAPI-RTSLQYSIISRKPRIT-TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELK 92
           SY P+  +S    +IS   RI  ++S+AD + S  ++ V   DP   VK+KA DI+ ELK
Sbjct: 30  SYKPLLSSSFSNRLISSHSRIAPSQSLADQSASTGIS-VVDSDPIDVVKRKAMDIAPELK 88

Query: 93  GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA 152
           G S+FLVG+NN+IKT+ GK LA+ALRYYYFDSD+L+ EAAGG  +A+A +E+DEK +Q++
Sbjct: 89  GASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQES 148

Query: 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
           ETEVLKQLSSMGRLVVCAG+GAVQS  NL  +      W
Sbjct: 149 ETEVLKQLSSMGRLVVCAGDGAVQSLTNLALLRHGISIW 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249076|ref|NP_001239733.1| uncharacterized protein LOC100781076 [Glycine max] gi|255640183|gb|ACU20382.1| unknown [Glycine max]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 104/134 (77%), Gaps = 2/134 (1%)

Query: 58  SIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117
           S++D T  ++V   A +  S AVKKKAA++S+ELKGTS+FLVG+ ++ KT LGK LADAL
Sbjct: 58  SVSDGTVPSSVG--ATDSSSLAVKKKAAEVSSELKGTSIFLVGLKSSFKTSLGKLLADAL 115

Query: 118 RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQS 177
           RYYYFDSD+LV EA GG  AAK+FRESDEKG+ + ETEVLKQLSSMGRLVVCAGNGAV S
Sbjct: 116 RYYYFDSDNLVEEAVGGALAAKSFRESDEKGFYECETEVLKQLSSMGRLVVCAGNGAVTS 175

Query: 178 SANLYEISGTFKTW 191
           S NL  +      W
Sbjct: 176 STNLALLRHGISLW 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631169|gb|ACU15950.1| unknown [Glycine max]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/134 (63%), Positives = 103/134 (76%), Gaps = 4/134 (2%)

Query: 58  SIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117
           S++D T S+++    A D S AVKK AA++S+ELKGTS+FLVG+ +++KT LGK LADAL
Sbjct: 48  SVSDGTVSSSL---GATDSSLAVKK-AAEVSSELKGTSIFLVGLKSSLKTSLGKLLADAL 103

Query: 118 RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQS 177
           RYYYFDSDSLV EA GG   AK+FRESDEKG+ ++ETEVLKQLS MGRLVVCAGNG V S
Sbjct: 104 RYYYFDSDSLVEEAVGGALVAKSFRESDEKGFYESETEVLKQLSPMGRLVVCAGNGTVTS 163

Query: 178 SANLYEISGTFKTW 191
           S NL  +      W
Sbjct: 164 STNLALLRHGISLW 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2088469	280	SKL1 "shikimate kinase-like 1"	0.721	0.546	0.567	1.4e-39
UNIPROTKB|Q5NTH3	307	SK2 "Shikimate kinase 2, chlor	0.632	0.436	0.362	4.1e-17
UNIPROTKB|Q7X7H9	287	SK3 "Shikimate kinase 3, chlor	0.632	0.466	0.384	5.3e-17
UNIPROTKB|Q5NTH4	308	SK1 "Shikimate kinase 1, chlor	0.632	0.435	0.347	1.4e-16
TAIR|locus:2052586	304	SK1 "shikimate kinase 1" [Arab	0.702	0.490	0.333	4.3e-15
TIGR_CMR|GSU_2026	175	GSU_2026 "shikimate kinase" [G	0.438	0.531	0.340	1.6e-07
UNIPROTKB|Q9KNV1	174	aroK "Shikimate kinase" [Vibri	0.424	0.517	0.318	2.2e-07
TIGR_CMR|VC_2629	174	VC_2629 "shikimate kinase" [Vi	0.424	0.517	0.318	2.2e-07
TIGR_CMR|CBU_1892	179	CBU_1892 "shikimate kinase" [C	0.537	0.636	0.289	2.9e-07
TIGR_CMR|SO_0286	171	SO_0286 "shikimate kinase" [Sh	0.386	0.479	0.337	6.2e-07

TAIR|locus:2088469 SKL1 "shikimate kinase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 88/155 (56%), Positives = 114/155 (73%)

Query:    38 PIRTSLQYSIISRKPRIT-TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSV 96
             P+ +S    +IS   RI  +RS+AD + S  ++ V   DP   VK+KA DI+ ELKG S+
Sbjct:    34 PLLSSSSTRLISCHSRIAPSRSLADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASI 92

Query:    97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV 156
             FLVG+NN+IKT+ GK LA+ALRYYYFDSD+L+ EAAGG  +A+A +E+DEK +Q++ETEV
Sbjct:    93 FLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEV 152

Query:   157 LKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW 191
             LKQLSSMGRLVVCAG+GAVQS  NL  +      W
Sbjct:   153 LKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIW 187

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006520 "cellular amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q5NTH3 SK2 "Shikimate kinase 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 50/138 (36%), Positives = 78/138 (56%)

Query:    75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
             D +  +K+K+ ++   L G  ++LVGM  + K+ + K LA+ L Y +FDSD LV +A G 
Sbjct:    76 DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGM 135

Query:   135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
              S A+ F+E  E  ++  E+ VL+ LSSM RLVV  G GAV    N   +      W ++
Sbjct:   136 PSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 195

Query:   194 IMD---RRSSRHGSKNGP 208
              +D   RR ++ G+ + P
Sbjct:   196 PLDALARRIAQVGTASRP 213

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

UNIPROTKB|Q7X7H9 SK3 "Shikimate kinase 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 53/138 (38%), Positives = 77/138 (55%)

Query:    75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
             D +  +K+KA D+   L    ++LVGM  + KT +GK LA+ L Y +FDSD LV +A G 
Sbjct:    73 DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132

Query:   135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
              S A+ F+   E  ++  E+EVL+ LSSM RLVV  G GAV    N   +      W ++
Sbjct:   133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192

Query:   194 IMD---RRSSRHGSKNGP 208
              +D   RR +  G+ + P
Sbjct:   193 PLDALARRIAAVGTASRP 210

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

UNIPROTKB|Q5NTH4 SK1 "Shikimate kinase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 48/138 (34%), Positives = 78/138 (56%)

Query:    75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
             D +  +K+K+ ++   L G  ++LVGM  + K+ +GK +++ L Y +FDSD LV +A G 
Sbjct:    78 DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137

Query:   135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTW-NI 193
              S A+ F+   E  ++  E+ VL+ LSSM RLVV  G GAV    N   +      W ++
Sbjct:   138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197

Query:   194 IMD---RRSSRHGSKNGP 208
              +D   RR ++ G+ + P
Sbjct:   198 PLDALARRIAKVGTASRP 215

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

TAIR|locus:2052586 SK1 "shikimate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 52/156 (33%), Positives = 83/156 (53%)

Query:    22 LKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDP--SFA 79
             +K D  F  L      P R + Q   +S  P +   S +D+ +S  + +  +  P     
Sbjct:    35 VKVDRRFRGLSLARLQPERRNDQRRAVS--PAV---SCSDNNSSGALLETGSVYPFDEDI 89

Query:    80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
             +K+KA ++   L G S++LVGM  + KT +GK ++  L Y +FD D+L+ +A  G S A+
Sbjct:    90 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 149

Query:   140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAV 175
              F    E  ++  ET+ LK+LSS  ++VV  G GAV
Sbjct:   150 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAV 185

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;TAS

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TIGR_CMR|GSU_2026 GSU_2026 "shikimate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 125 (49.1 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 32/94 (34%), Positives = 48/94 (51%)

Query:    87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
             +S    G +V L G     K+ +GK LA  L Y + D D+L+ E AG  S  + F    E
Sbjct:     1 MSVPSDGRNVVLTGFMGTGKSTVGKLLARRLGYRFSDLDALIVERAG-ISINEIFERYGE 59

Query:   147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSAN 180
             + +++ ETE ++ L  +   VV  G GAV +  N
Sbjct:    60 QRFRELETEAIRSLGGVSGRVVATGGGAVIAPRN 93

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

UNIPROTKB|Q9KNV1 aroK "Shikimate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 124 (48.7 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 29/91 (31%), Positives = 49/91 (53%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             ++FLVG   A K+ +G+ LA  L   + DSD+++ E  G +  A  F    E+G+++ E 
Sbjct:     6 NIFLVGPMGAGKSTIGRHLAQQLHMEFIDSDTVIEERTGAD-IAWVFDVEGEEGFRKREE 64

Query:   155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS 185
              V+  L+    +V+  G G+V S  N   +S
Sbjct:    65 AVINDLTEQQGIVLATGGGSVISKENRNRLS 95

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|VC_2629 VC_2629 "shikimate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 124 (48.7 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 29/91 (31%), Positives = 49/91 (53%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             ++FLVG   A K+ +G+ LA  L   + DSD+++ E  G +  A  F    E+G+++ E 
Sbjct:     6 NIFLVGPMGAGKSTIGRHLAQQLHMEFIDSDTVIEERTGAD-IAWVFDVEGEEGFRKREE 64

Query:   155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS 185
              V+  L+    +V+  G G+V S  N   +S
Sbjct:    65 AVINDLTEQQGIVLATGGGSVISKENRNRLS 95

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|CBU_1892 CBU_1892 "shikimate kinase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 35/121 (28%), Positives = 59/121 (48%)

Query:    94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
             T+++L+G+  A KT +G  LA   +   +DSD  + E   G   A  F    E G+++ E
Sbjct:     6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI-EKRTGADIAWIFEMEGEAGFRRRE 64

Query:   154 TEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGT----FKTWNIIMDRRSSRHGSKNGPQ 209
              E+++ L  +  +++  G G V    N  +IS T    + T +I  D +  R G K   +
Sbjct:    65 REMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASI--DTQLKRIGQKGEMR 122

Query:   210 R 210
             R
Sbjct:   123 R 123

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SO_0286 SO_0286 "shikimate kinase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 121 (47.7 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 28/83 (33%), Positives = 46/83 (55%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             ++FLVG   A K+ +G+ LA  L   + DSD  + +  G +  A  F    E+G+++ E 
Sbjct:     6 NIFLVGPMGAGKSTIGRHLAQMLHLEFHDSDQEIEQRTGAD-IAWVFDVEGEEGFRRREA 64

Query:   155 EVLKQLSSMGRLVVCAGNGAVQS 177
             +V+  LS    +V+  G G+VQS
Sbjct:    65 QVIADLSEKQGIVLATGGGSVQS 87

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691
4th Layer	2.7.1.71	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
cd00464	154	cd00464, SK, Shikimate kinase (SK) is the fifth en	8e-21
PLN02199	303	PLN02199, PLN02199, shikimate kinase	3e-18
pfam01202	158	pfam01202, SKI, Shikimate kinase	8e-17
PRK00131	175	PRK00131, aroK, shikimate kinase; Reviewed	2e-13
COG0703	172	COG0703, AroK, Shikimate kinase [Amino acid transp	6e-11
PRK05057	172	PRK05057, aroK, shikimate kinase I; Reviewed	1e-06
PRK13946	184	PRK13946, PRK13946, shikimate kinase; Provisional	4e-06
PRK13951	488	PRK13951, PRK13951, bifunctional shikimate kinase/	8e-06
PRK03731	171	PRK03731, aroL, shikimate kinase II; Reviewed	9e-06
PRK13949	169	PRK13949, PRK13949, shikimate kinase; Provisional	2e-05
PRK13947	171	PRK13947, PRK13947, shikimate kinase; Provisional	4e-05
PRK13948	182	PRK13948, PRK13948, shikimate kinase; Provisional	1e-04
PRK00625	173	PRK00625, PRK00625, shikimate kinase; Provisional	0.001

>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

 Score = 84.1 bits (209), Expect = 8e-21
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++ L+GM  A KT +G+ LA AL   + D D L  E   G S  + F E  E+G+++ E 
Sbjct: 1   NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL-IEQRAGMSIPEIFAEEGEEGFRELER 59

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
           EVL  L +    V+  G GAV    N
Sbjct: 60  EVLLLLLTKENAVIATGGGAVLREEN 85

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154

>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase

 Score = 80.5 bits (198), Expect = 3e-18
 Identities = 39/96 (40%), Positives = 60/96 (62%)

Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +K+KA ++   L G S++LVGM  + KT +GK ++  L Y +FD D+L+ +A  G S A+
Sbjct: 89  LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 148

Query: 140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAV 175
            F    E  ++  ET+ LK+LSS  ++VV  G GAV
Sbjct: 149 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAV 184

Length = 303

>gnl|CDD|216360 pfam01202, SKI, Shikimate kinase

 Score = 73.8 bits (182), Expect = 8e-17
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 104 AIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163
           A K+ +G+ LA AL   + D+D    E   G S A+ F E  E+G+++ E+EVLK+L + 
Sbjct: 3   AGKSTIGRLLAKALGLPFIDTDQE-IEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLAE 61

Query: 164 GRLVVCAGNGAVQSSAN 180
              V+  G GAV S  N
Sbjct: 62  HNAVIATGGGAVLSEEN 78

Length = 158

>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 91  LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
           LKG ++ L+G   A K+ +G+ LA  L Y + D+D L+ EA  G+S  + F E  E  ++
Sbjct: 2   LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLI-EARAGKSIPEIFEEEGEAAFR 60

Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSAN 180
           + E EVL +L +   LV+  G GAV    N
Sbjct: 61  ELEEEVLAELLARHNLVISTGGGAVLREEN 90

Length = 175

>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++ L+G   A K+ +G+ LA AL   + D+D  + E   G S A+ F E  E+G+++ ET
Sbjct: 4   NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEI-EKRTGMSIAEIFEEEGEEGFRRLET 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
           EVLK+L      V+  G GAV S  N
Sbjct: 63  EVLKELLEEDNAVIATGGGAVLSEEN 88

Length = 172

>gnl|CDD|235335 PRK05057, aroK, shikimate kinase I; Reviewed

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVG   A K+ +G+ LA  L   ++DSD    E   G      F    E+G++  E +
Sbjct: 7   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ-EIEKRTGADIGWVFDVEGEEGFRDREEK 65

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN 180
           V+ +L+    +V+  G G+V+S   
Sbjct: 66  VINELTEKQGIVLATGGGSVKSRET 90

Length = 172

>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 84  AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRE 143
                  L   +V LVG+  A K+ +G+ LA  L   + D+D+ + E A   + A+ F  
Sbjct: 1   EERARAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI-ERAARMTIAEIFAA 59

Query: 144 SDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174
             E  ++  E  V+ +L   G LV+  G GA
Sbjct: 60  YGEPEFRDLERRVIARLLKGGPLVLATGGGA 90

Length = 184

>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVGM  + K+ +GK +++ L   + D D  + E   G S  + F E  E+ ++  E E
Sbjct: 3   IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEI-ERREGRSVRRIFEEDGEEYFRLKEKE 61

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN 180
           +L++L     +VV  G G V    N
Sbjct: 62  LLRELVERDNVVVATGGGVVIDPEN 86

Length = 488

>gnl|CDD|235153 PRK03731, aroL, shikimate kinase II; Reviewed

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVG     KT +G  LA AL Y + D+D  +   +    A    RE    G++  E+ 
Sbjct: 5   LFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWA-GFRARESA 63

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN 180
            L+ +++    V+  G G + +  N
Sbjct: 64  ALEAVTAPST-VIATGGGIILTEEN 87

Length = 171

>gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVG   A KT LGK LA  L   + D D  + E    ++    F E  E  +++ E  
Sbjct: 4   IFLVGYMGAGKTTLGKALARELGLSFIDLDFFI-ENRFHKTVGDIFAERGEAVFRELERN 62

Query: 156 VLKQLSSMGRLVVCAGNGA 174
           +L +++    +V+  G GA
Sbjct: 63  MLHEVAEFEDVVISTGGGA 81

Length = 169

>gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           + L+G     KT +GK +A  L + + D+D  + E   G + A+ F +  E  ++  E  
Sbjct: 4   IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEI-EKMTGMTVAEIFEKDGEVRFRSEEKL 62

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANL 181
           ++K+L+ +  LV+  G G V +  N+
Sbjct: 63  LVKKLARLKNLVIATGGGVVLNPENV 88

Length = 171

>gnl|CDD|184413 PRK13948, PRK13948, shikimate kinase; Provisional

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 94  TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
           T V L G     K+ +G  L+ AL  ++ D+D  + E   G+S  + FR   E  +++ E
Sbjct: 11  TWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYI-ERVTGKSIPEIFRHLGEAYFRRCE 69

Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSAN 180
            EV+++L+ +   V+  G G      N
Sbjct: 70  AEVVRRLTRLDYAVISLGGGTFMHEEN 96

Length = 182

>gnl|CDD|134335 PRK00625, PRK00625, shikimate kinase; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV---FEAAGGESAAKAFRESDEKGYQQA 152
           +FL G+    KT  GK LA  L   +FD+D L+   +  A   S  + ++   E+G+ + 
Sbjct: 3   IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCRE 62

Query: 153 ETEVLKQL 160
           E   L  L
Sbjct: 63  EFLALTSL 70

Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.96
PLN02199	303	shikimate kinase	99.95
PRK13948	182	shikimate kinase; Provisional	99.92
PRK13949	169	shikimate kinase; Provisional	99.9
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.9
PRK00625	173	shikimate kinase; Provisional	99.9
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.89
PRK13946	184	shikimate kinase; Provisional	99.88
PRK13947	171	shikimate kinase; Provisional	99.88
PRK05057	172	aroK shikimate kinase I; Reviewed	99.87
PRK03731	171	aroL shikimate kinase II; Reviewed	99.86
PRK00131	175	aroK shikimate kinase; Reviewed	99.84
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.83
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.82
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.78
PRK09169	2316	hypothetical protein; Validated	99.53
PRK03839	180	putative kinase; Provisional	99.5
PRK14530	215	adenylate kinase; Provisional	99.4
PRK06217	183	hypothetical protein; Validated	99.37
PRK14532	188	adenylate kinase; Provisional	99.37
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.36
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.32
PRK08118	167	topology modulation protein; Reviewed	99.3
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.3
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.29
PRK05541	176	adenylylsulfate kinase; Provisional	99.27
PRK04182	180	cytidylate kinase; Provisional	99.25
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.21
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.21
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.2
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.18
PLN02674	244	adenylate kinase	99.18
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.17
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.14
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.13
PRK00279	215	adk adenylate kinase; Reviewed	99.11
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.11
PTZ00088	229	adenylate kinase 1; Provisional	99.09
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.09
PRK07261	171	topology modulation protein; Provisional	99.09
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.08
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.08
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.07
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.07
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.07
PRK14531	183	adenylate kinase; Provisional	99.06
PHA02530	300	pseT polynucleotide kinase; Provisional	99.04
PRK06547	172	hypothetical protein; Provisional	99.01
PRK01184	184	hypothetical protein; Provisional	99.0
PRK06762	166	hypothetical protein; Provisional	98.97
PRK02496	184	adk adenylate kinase; Provisional	98.95
PRK13975	196	thymidylate kinase; Provisional	98.94
PRK14527	191	adenylate kinase; Provisional	98.94
PRK13808	333	adenylate kinase; Provisional	98.94
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.93
PRK00889	175	adenylylsulfate kinase; Provisional	98.93
PRK03846	198	adenylylsulfate kinase; Provisional	98.92
PRK14528	186	adenylate kinase; Provisional	98.91
PLN02200	234	adenylate kinase family protein	98.89
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.88
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.87
PRK14526	211	adenylate kinase; Provisional	98.85
PRK09825	176	idnK D-gluconate kinase; Provisional	98.85
PRK11545	163	gntK gluconate kinase 1; Provisional	98.84
PLN02459	261	probable adenylate kinase	98.82
PLN02165	334	adenylate isopentenyltransferase	98.79
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.79
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.79
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.78
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.77
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.77
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	98.76
PRK04040	188	adenylate kinase; Provisional	98.74
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.74
PRK14529	223	adenylate kinase; Provisional	98.74
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.73
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.7
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.67
PRK00023	225	cmk cytidylate kinase; Provisional	98.66
PRK08233	182	hypothetical protein; Provisional	98.64
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.62
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.61
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.59
PLN02422	232	dephospho-CoA kinase	98.59
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.59
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.58
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.57
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.56
PRK08356	195	hypothetical protein; Provisional	98.5
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.49
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.45
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.44
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.42
PLN02842	505	nucleotide kinase	98.41
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.4
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.39
PTZ00451	244	dephospho-CoA kinase; Provisional	98.36
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.36
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.36
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.34
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.34
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.31
PRK05480	209	uridine/cytidine kinase; Provisional	98.31
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.31
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.3
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.29
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.28
PF00004	132	AAA: ATPase family associated with various cellula	98.26
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.25
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.24
COG0645	170	Predicted kinase [General function prediction only	98.23
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.2
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.19
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.17
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.17
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.16
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.14
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.06
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.06
COG4639	168	Predicted kinase [General function prediction only	98.06
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.04
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.02
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.99
PHA00729	226	NTP-binding motif containing protein	97.98
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.98
PRK12338	319	hypothetical protein; Provisional	97.97
PTZ00301	210	uridine kinase; Provisional	97.95
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.94
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.93
PRK00300	205	gmk guanylate kinase; Provisional	97.91
PLN02840	421	tRNA dimethylallyltransferase	97.9
PRK06696	223	uridine kinase; Validated	97.89
PRK13973	213	thymidylate kinase; Provisional	97.89
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.88
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.87
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.86
PLN02748	468	tRNA dimethylallyltransferase	97.86
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	97.86
PRK00698	205	tmk thymidylate kinase; Validated	97.86
smart00382	148	AAA ATPases associated with a variety of cellular	97.86
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.85
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.84
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	97.8
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.79
PRK05439	311	pantothenate kinase; Provisional	97.78
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.77
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.77
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.76
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.71
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.7
CHL00195	489	ycf46 Ycf46; Provisional	97.69
PRK08084	235	DNA replication initiation factor; Provisional	97.67
PRK09087	226	hypothetical protein; Validated	97.67
PRK06620	214	hypothetical protein; Validated	97.66
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.66
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.66
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.65
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.64
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.63
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.62
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.62
PRK14737	186	gmk guanylate kinase; Provisional	97.62
PLN02348	395	phosphoribulokinase	97.62
PHA02244	383	ATPase-like protein	97.6
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.6
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.59
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.59
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.58
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.57
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.56
PRK14738	206	gmk guanylate kinase; Provisional	97.55
PRK04195	482	replication factor C large subunit; Provisional	97.55
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.55
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.53
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.53
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.53
PRK06893	229	DNA replication initiation factor; Validated	97.52
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.51
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.51
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.5
CHL00181	287	cbbX CbbX; Provisional	97.5
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.5
PF13173	128	AAA_14: AAA domain	97.5
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.49
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.47
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.47
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.47
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.46
PRK07667	193	uridine kinase; Provisional	97.44
CHL00176	638	ftsH cell division protein; Validated	97.43
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.43
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.42
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.41
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.41
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.41
PRK13974	212	thymidylate kinase; Provisional	97.4
PRK13342	413	recombination factor protein RarA; Reviewed	97.4
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.4
PRK15453	290	phosphoribulokinase; Provisional	97.39
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.38
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.37
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.36
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.36
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.34
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.32
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.31
PRK06761	282	hypothetical protein; Provisional	97.3
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.3
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.29
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.29
PRK10646	153	ADP-binding protein; Provisional	97.28
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.28
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.26
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.24
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.23
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.22
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.21
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.2
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.2
COG0714	329	MoxR-like ATPases [General function prediction onl	97.17
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.17
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.17
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.17
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.16
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.16
PRK09183	259	transposase/IS protein; Provisional	97.14
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.11
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.1
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.08
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.07
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.07
PF07726	131	AAA_3: ATPase family associated with various cellu	97.05
PRK12402	337	replication factor C small subunit 2; Reviewed	97.05
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.03
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.03
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.01
PRK08181	269	transposase; Validated	97.01
PLN03025	319	replication factor C subunit; Provisional	96.99
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	96.99
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.99
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.98
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.97
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.97
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	96.97
PRK07429	327	phosphoribulokinase; Provisional	96.97
PRK06526	254	transposase; Provisional	96.95
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.95
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.95
PRK12377	248	putative replication protein; Provisional	96.95
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.94
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.92
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.92
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.92
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.9
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	96.88
PRK13341	725	recombination factor protein RarA/unknown domain f	96.87
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.87
PF05729	166	NACHT: NACHT domain	96.87
PRK05642	234	DNA replication initiation factor; Validated	96.86
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.85
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.85
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.85
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.84
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.84
PRK07952	244	DNA replication protein DnaC; Validated	96.82
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.82
KOG2028	554	consensus ATPase related to the helicase subunit o	96.81
COG0802	149	Predicted ATPase or kinase [General function predi	96.8
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.78
PHA02544	316	44 clamp loader, small subunit; Provisional	96.77
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.76
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.76
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.76
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.75
CHL00206	2281	ycf2 Ycf2; Provisional	96.75
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.74
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.73
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.73
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.73
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.73
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.71
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	96.71
PRK06835	329	DNA replication protein DnaC; Validated	96.71
CHL00095	821	clpC Clp protease ATP binding subunit	96.69
PRK15455	644	PrkA family serine protein kinase; Provisional	96.69
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.68
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.67
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.67
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.67
PRK10865	857	protein disaggregation chaperone; Provisional	96.66
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	96.65
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.65
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.65
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.64
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.62
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.62
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.62
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.62
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	96.61
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.6
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.59
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.58
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.58
PRK08727	233	hypothetical protein; Validated	96.58
PRK08939	306	primosomal protein DnaI; Reviewed	96.58
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.58
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.57
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.57
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.57
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	96.56
COG1855	604	ATPase (PilT family) [General function prediction	96.56
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.56
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.56
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	96.56
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.55
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	96.55
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.55
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.54
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.53
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.53
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.53
PRK06921	266	hypothetical protein; Provisional	96.53
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.52
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.52
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.52
PRK13695	174	putative NTPase; Provisional	96.51
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.51
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.51
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.5
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.5
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.5
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.5
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.49
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.49
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.49
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.48
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.48
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.47
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.47
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.47
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.47
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.46
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.45
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.45
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.45
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.45
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.44
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.44
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.44
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.41
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	96.41
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.41
PRK08116	268	hypothetical protein; Validated	96.4
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.4
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.39
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.39
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.39
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.39
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.38
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.38
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.38
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.38
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.36
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.36
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.36
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.35
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.35
PF13479	213	AAA_24: AAA domain	96.35
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.35
PRK12422	445	chromosomal replication initiation protein; Provis	96.35
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.34
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.34
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.34
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.34
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.34
COG3709	192	Uncharacterized component of phosphonate metabolis	96.33
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.33
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.32
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.32
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	96.32
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.32
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.31
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.31
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.31
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.3
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.3
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.29
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.29
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.27
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.26
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.26
PRK10908	222	cell division protein FtsE; Provisional	96.26
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.26
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.26
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.26
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.26
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.25
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.25
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.25
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.25
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.25
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.25
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.25
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.25
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.25
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.25
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.24
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.24
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.24
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.24
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.23
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.23
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.23
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.23
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.22
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.22
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.21
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.21
cd03246	173	ABCC_Protease_Secretion This family represents the	96.21
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.21
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.2
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.2
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.19
PLN02924	220	thymidylate kinase	96.19
PLN02796	347	D-glycerate 3-kinase	96.19
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.19
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.19
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.19
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.19
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.18
PRK13531	498	regulatory ATPase RavA; Provisional	96.18
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.18
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.18
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.17
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	96.17
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.17
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.17
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.17
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.16
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.16
PF13245	76	AAA_19: Part of AAA domain	96.16
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.16
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.15
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.15
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.15
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.15
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.15
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.15
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.15
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.15
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	96.15
cd01128	249	rho_factor Transcription termination factor rho is	96.14
PRK10416	318	signal recognition particle-docking protein FtsY;	96.14
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.14
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.14
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.14
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.14
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.13
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.13
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.13
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.12
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.12
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.12
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.12
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.11
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.11
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.11
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.11
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.11
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.1
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.09
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.09
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.09
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.09
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.09
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.09
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.09
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	96.08
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	96.08
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.08
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	96.08
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.07
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.07
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.07
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.07
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	96.07
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	96.07
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.07
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.06
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	96.05
cd02034	116	CooC The accessory protein CooC, which contains a	96.04
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.04
PHA02624	647	large T antigen; Provisional	96.04
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.03
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.03
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.03
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.03
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.03

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.96  E-value=3.5e-29  Score=209.16  Aligned_cols=111  Identities=29%  Similarity=0.369  Sum_probs=103.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg  172 (212)
                      .++|+|+|+|||||||+|+.||++|+++|+|+|.++++..| ++++++|+++||+.||+.|.++++++...++.|||+||
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG   80 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG   80 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence            46899999999999999999999999999999999999999 99999999999999999999999999988789999999


Q ss_pred             ceeechhhHHhcc-CCeEEEEEechhhhhcccC
Q 028227          173 GAVQSSANLYEIS-GTFKTWNIIMDRRSSRHGS  204 (212)
Q Consensus       173 G~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R~~~  204 (212)
                      |+|.++.|+.+|+ ++++|||+++.+.+.++..
T Consensus        81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~  113 (172)
T COG0703          81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ  113 (172)
T ss_pred             ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc
Confidence            9999999999998 8899999998754444444

>PLN02199 shikimate kinase

Probab=99.95  E-value=1.8e-27  Score=213.64  Aligned_cols=123  Identities=34%  Similarity=0.503  Sum_probs=116.6

Q ss_pred             cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCCCchhhhhhhhchHHHHH
Q 028227           73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGGESAAKAFRESDEKGYQQ  151 (212)
Q Consensus        73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~~si~ei~~~~Ge~~fr~  151 (212)
                      +.|+. +||++++++++.+++.+|+|+|++||||||+|+.||+.+|++|+|+|.++++. .| .++.++|+.+|+..||+
T Consensus        83 ~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G-~sI~eIf~~~GE~~FR~  160 (303)
T PLN02199         83 PFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNG-TSVAEIFVHHGENFFRG  160 (303)
T ss_pred             CCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcC-CCHHHHHHHhCHHHHHH
Confidence            78887 59999999999999999999999999999999999999999999999999997 46 89999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCceeechhhHHhccCCeEEEEEechh
Q 028227          152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR  197 (212)
Q Consensus       152 ~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~~~~  197 (212)
                      .|.++|+++....++||+||||+|+.+.||.+|++|++|||+++.+
T Consensus       161 ~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E  206 (303)
T PLN02199        161 KETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLE  206 (303)
T ss_pred             HHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHH
Confidence            9999999998778899999999999999999999999999999754

>PRK13948 shikimate kinase; Provisional

Probab=99.92  E-value=1e-24  Score=183.14  Aligned_cols=110  Identities=22%  Similarity=0.250  Sum_probs=101.6

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA  170 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~  170 (212)
                      ..+.+|+|+|+|||||||+|+.||+.+|++|+|+|.++++.+| +++.++|++.|+..||+.|.++++++...+++||+|
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~   86 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL   86 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            3578999999999999999999999999999999999999998 899999999999999999999999998778899999


Q ss_pred             CCceeechhhHHhcc-CCeEEEEEechhhhhc
Q 028227          171 GNGAVQSSANLYEIS-GTFKTWNIIMDRRSSR  201 (212)
Q Consensus       171 GgG~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R  201 (212)
                      |||+++++.|++.|+ ++.+|||+++.+.+.+
T Consensus        87 GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~  118 (182)
T PRK13948         87 GGGTFMHEENRRKLLSRGPVVVLWASPETIYE  118 (182)
T ss_pred             CCcEEcCHHHHHHHHcCCeEEEEECCHHHHHH
Confidence            999999999999887 7899999997654433

>PRK13949 shikimate kinase; Provisional

Probab=99.90  E-value=1.7e-23  Score=172.81  Aligned_cols=107  Identities=23%  Similarity=0.303  Sum_probs=98.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ++|+|+|+|||||||+|+.||+.++++|+|+|.++++..+ .++.+++++.|++.|++.|.++++++...+++||+||||
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg   80 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG   80 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            4799999999999999999999999999999999999988 789999999999999999999999988778899999999


Q ss_pred             eeechhhHHhcc-CCeEEEEEechhhhhc
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIMDRRSSR  201 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R  201 (212)
                      ++....++++|+ .+++|||+++.+.+.+
T Consensus        81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~  109 (169)
T PRK13949         81 APCFFDNMELMNASGTTVYLKVSPEVLFV  109 (169)
T ss_pred             ccCCHHHHHHHHhCCeEEEEECCHHHHHH
Confidence            999999999997 8999999998654433

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.90  E-value=7.5e-24  Score=171.98  Aligned_cols=99  Identities=23%  Similarity=0.308  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCceeechhhH
Q 028227          102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL  181 (212)
Q Consensus       102 ~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~  181 (212)
                      |||||||+|+.||+.||++|+|+|.++++..| +++.+++.+.|++.||+.|.++++++....++||+||||+++.+.++
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~   79 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR   79 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence            79999999999999999999999999999999 99999999999999999999999999987799999999999999999


Q ss_pred             Hhcc-CCeEEEEEechhhhhc
Q 028227          182 YEIS-GTFKTWNIIMDRRSSR  201 (212)
Q Consensus       182 ~~L~-~g~vV~Ld~~~~~v~R  201 (212)
                      ++|+ .+++|||+.+.+.+.+
T Consensus        80 ~~L~~~g~vI~L~~~~~~l~~  100 (158)
T PF01202_consen   80 ELLKENGLVIYLDADPEELAE  100 (158)
T ss_dssp             HHHHHHSEEEEEE--HHHHHH
T ss_pred             HHHHhCCEEEEEeCCHHHHHH
Confidence            9998 8999999997654433

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK00625 shikimate kinase; Provisional

Probab=99.90  E-value=4.8e-23  Score=171.50  Aligned_cols=102  Identities=24%  Similarity=0.319  Sum_probs=94.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCC----chhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~----si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa  169 (212)
                      ++|+|+|+|||||||+|+.||+.+|++|+|+|.++++..| .    ++.++++..|++.||+.|.++++.+.. ++.||+
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g-~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs   78 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH-GALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVA   78 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhC-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence            3699999999999999999999999999999999999887 5    889999999999999999999999875 678999


Q ss_pred             eCCceeechhhHHhcc-CCeEEEEEechh
Q 028227          170 AGNGAVQSSANLYEIS-GTFKTWNIIMDR  197 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~  197 (212)
                      ||||++.+++++..|+ .+++|||+++.+
T Consensus        79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e  107 (173)
T PRK00625         79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIA  107 (173)
T ss_pred             CCCCccCCHHHHHHHhcCCEEEEEECCHH
Confidence            9999999999999997 789999999854

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.89  E-value=3.4e-23  Score=198.49  Aligned_cols=106  Identities=21%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      +.+.|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.++|+++||+.||+.|.++++++....++||+||
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G   83 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG   83 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence            357899999999999999999999999999999999999998 9999999999999999999999999887678999999


Q ss_pred             CceeechhhHHhc----c-CCeEEEEEechhh
Q 028227          172 NGAVQSSANLYEI----S-GTFKTWNIIMDRR  198 (212)
Q Consensus       172 gG~V~~~~~~~~L----~-~g~vV~Ld~~~~~  198 (212)
                      ||+|+++.|+++|    + ++++|||+++.+.
T Consensus        84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~  115 (542)
T PRK14021         84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKE  115 (542)
T ss_pred             CchhCCHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            9999999999965    4 6899999997643

>PRK13946 shikimate kinase; Provisional

Probab=99.88  E-value=5e-22  Score=164.94  Aligned_cols=115  Identities=26%  Similarity=0.328  Sum_probs=103.6

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEE
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV  168 (212)
                      +.+.+++|+|+|++||||||+|+.||++||++|+|+|.++++..| .++.+++...|+..|++.|.++++.+...+.+||
T Consensus         6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi   84 (184)
T PRK13946          6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL   84 (184)
T ss_pred             hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            566788999999999999999999999999999999999999887 7888999999999999999999999987788999


Q ss_pred             EeCCceeechhhHHhcc-CCeEEEEEechh-hhhcccC
Q 028227          169 CAGNGAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHGS  204 (212)
Q Consensus       169 a~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~~  204 (212)
                      +||+|.+..+.++++|+ ++++|||+++.+ +++|...
T Consensus        85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~  122 (184)
T PRK13946         85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSR  122 (184)
T ss_pred             ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcC
Confidence            99999999999999986 889999999865 4455443

>PRK13947 shikimate kinase; Provisional

Probab=99.88  E-value=6.5e-22  Score=160.13  Aligned_cols=107  Identities=22%  Similarity=0.368  Sum_probs=97.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      +|+|+|+|||||||+|+.||+.+|++|+|.|.++++..| .++.+++...|+..|++.|.++++.+....++||++|+|+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~   81 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV   81 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence            799999999999999999999999999999999999988 7888999999999999999999999987778999999999


Q ss_pred             eechhhHHhcc-CCeEEEEEechhh-hhcc
Q 028227          175 VQSSANLYEIS-GTFKTWNIIMDRR-SSRH  202 (212)
Q Consensus       175 V~~~~~~~~L~-~g~vV~Ld~~~~~-v~R~  202 (212)
                      +++..++..|+ .+++|||+++.+. .+|.
T Consensus        82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl  111 (171)
T PRK13947         82 VLNPENVVQLRKNGVVICLKARPEVILRRV  111 (171)
T ss_pred             cCCHHHHHHHHhCCEEEEEECCHHHHHHHh
Confidence            99998888887 7899999998653 3443

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.87  E-value=1.1e-21  Score=162.10  Aligned_cols=105  Identities=25%  Similarity=0.402  Sum_probs=97.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      +..+|+|+|++||||||+++.||+.+|++|+|+|..+++..| .++.++++..|+..|++.|.++++.+...+.+|+++|
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g   81 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG   81 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            457899999999999999999999999999999999999888 7888999999999999999999999987788999999


Q ss_pred             CceeechhhHHhcc-CCeEEEEEechh
Q 028227          172 NGAVQSSANLYEIS-GTFKTWNIIMDR  197 (212)
Q Consensus       172 gG~V~~~~~~~~L~-~g~vV~Ld~~~~  197 (212)
                      ||++.++.++++|+ .+++|||+++.+
T Consensus        82 gg~v~~~~~~~~l~~~~~vv~L~~~~e  108 (172)
T PRK05057         82 GGSVKSRETRNRLSARGVVVYLETTIE  108 (172)
T ss_pred             CchhCCHHHHHHHHhCCEEEEEeCCHH
Confidence            99999999999996 899999999764

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.86  E-value=5.1e-21  Score=155.38  Aligned_cols=102  Identities=22%  Similarity=0.326  Sum_probs=94.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ++|+|+|++||||||+|+.||+++|++|+|.|.+++...| +++.+++++.|++.|++.|.++++.+. ..++||++|+|
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence            5799999999999999999999999999999999999988 888999999999999999999998765 57789999999


Q ss_pred             eeechhhHHhcc-CCeEEEEEechh
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIMDR  197 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~~~  197 (212)
                      +|+...++++|+ ++++|||+++.+
T Consensus        81 ~vl~~~~~~~l~~~~~~v~l~~~~~  105 (171)
T PRK03731         81 IILTEENRHFMRNNGIVIYLCAPVS  105 (171)
T ss_pred             ccCCHHHHHHHHhCCEEEEEECCHH
Confidence            999999999997 889999999764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.84  E-value=4.4e-20  Score=147.98  Aligned_cols=112  Identities=30%  Similarity=0.425  Sum_probs=99.4

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA  170 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~  170 (212)
                      +++..|+|+|+|||||||+|+.||+.+|++|+|.|.++++..| .++.+++.+.|+..|++.|.++++++....++||++
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~   80 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST   80 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            3578999999999999999999999999999999999999888 788888989999999999999999998766789999


Q ss_pred             CCceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227          171 GNGAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG  203 (212)
Q Consensus       171 GgG~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~  203 (212)
                      |+|.++...++++|+ ++++|||+++.+ .++|..
T Consensus        81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~  115 (175)
T PRK00131         81 GGGAVLREENRALLRERGTVVYLDASFEELLRRLR  115 (175)
T ss_pred             CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhc
Confidence            999999999999995 789999999865 334443

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.83  E-value=4e-20  Score=175.60  Aligned_cols=113  Identities=26%  Similarity=0.381  Sum_probs=101.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      +|+|+|+|||||||+|+.||+.+|++|+|+|.++++..| +++.++++++|+++||+.|.++++++....++||+||+|+
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggv   80 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGV   80 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcc
Confidence            699999999999999999999999999999999999988 8999999999999999999999999987778999999999


Q ss_pred             eechhhHHhccCCeEEEEEechh-hhhcccCCCCC
Q 028227          175 VQSSANLYEISGTFKTWNIIMDR-RSSRHGSKNGP  208 (212)
Q Consensus       175 V~~~~~~~~L~~g~vV~Ld~~~~-~v~R~~~~~~~  208 (212)
                      ++++.++++|+.+.+|||+++.+ ..+|....+||
T Consensus        81 v~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RP  115 (488)
T PRK13951         81 VIDPENRELLKKEKTLFLYAPPEVLMERVTTENRP  115 (488)
T ss_pred             ccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCC
Confidence            99999999998777999999754 44444334444

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.82  E-value=1.2e-19  Score=143.48  Aligned_cols=110  Identities=31%  Similarity=0.427  Sum_probs=96.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      +|+|+|+|||||||+|+.||+.+|++++|.|.++++..| .++.+++...|++.|+..|.+++..+....++||++|+|.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~   79 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA   79 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence            589999999999999999999999999999999999988 6788999999999999999999999988888999999999


Q ss_pred             eechhhHHhcc-CCeEEEEEechhh-hhcccCC
Q 028227          175 VQSSANLYEIS-GTFKTWNIIMDRR-SSRHGSK  205 (212)
Q Consensus       175 V~~~~~~~~L~-~g~vV~Ld~~~~~-v~R~~~~  205 (212)
                      +.+..+++.+. ++++|||+++.+. ++|...+
T Consensus        80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r  112 (154)
T cd00464          80 VLREENRRLLLENGIVVWLDASPEELLERLARD  112 (154)
T ss_pred             cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccC
Confidence            98887766654 8899999998764 4554433

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.78  E-value=2.5e-18  Score=154.17  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=97.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhc-CCCEEEEe
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA  170 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~-~~~~VVa~  170 (212)
                      ++.+|+|+|++||||||+|+.||+.+|++|+|+|..+++..| .++.+++...|++.|++.|.+++..+.. .+..||++
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~  210 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLAT  210 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence            468999999999999999999999999999999999999988 8899999999999999999999998764 45689999


Q ss_pred             CCceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227          171 GNGAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG  203 (212)
Q Consensus       171 GgG~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~  203 (212)
                      |+|++..+.++.++. ++++|||+++.+ +++|..
T Consensus       211 Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~  245 (309)
T PRK08154        211 GGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVR  245 (309)
T ss_pred             CCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHh
Confidence            999999888887775 789999999865 445543

>PRK09169 hypothetical protein; Validated

Probab=99.53  E-value=2.9e-14  Score=151.36  Aligned_cols=105  Identities=11%  Similarity=-0.025  Sum_probs=97.9

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa  169 (212)
                      .|.+.+|+|+|++|+||||||+.||..|++.|+|+|..+++..| ++|.+||..+|  .|++.|.+.+..+.. ...||+
T Consensus      2107 rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLS 2182 (2316)
T PRK09169       2107 RLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR-WEVVLP 2182 (2316)
T ss_pred             HHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEe
Confidence            45678999999999999999999999999999999999999998 89999999999  999999999999885 789999


Q ss_pred             eCCceeechhhHHhcc-CCeEEEEEechhh
Q 028227          170 AGNGAVQSSANLYEIS-GTFKTWNIIMDRR  198 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~~  198 (212)
                      +|||++....++..|+ +|++||++.+...
T Consensus      2183 TGGGav~~~enr~~L~~~GlvV~L~an~~t 2212 (2316)
T PRK09169       2183 AEGFGAAVEQARQALGAKGLRVMRINNGFA 2212 (2316)
T ss_pred             CCCCcccCHHHHHHHHHCCEEEEEECCHHH
Confidence            9999999999999997 8999999997543

>PRK03839 putative kinase; Provisional

Probab=99.50  E-value=7.6e-14  Score=114.51  Aligned_cols=94  Identities=14%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      .|+|+|+|||||||+|+.||++++++|+|+|+++++.    .+.+.+...++..|+..+..+.+.+. .+++|+ +|.  
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~vIi-dG~--   73 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEFK-EKNVVL-DGH--   73 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhcc-CCCEEE-Eec--
Confidence            6999999999999999999999999999999998763    23455656677788888888776543 345555 331  


Q ss_pred             eechhhHHhccCCeEEEEEechhhhhc
Q 028227          175 VQSSANLYEISGTFKTWNIIMDRRSSR  201 (212)
Q Consensus       175 V~~~~~~~~L~~g~vV~Ld~~~~~v~R  201 (212)
                           ...++..+++|||+++.+.+.+
T Consensus        74 -----~~~l~~~~~vi~L~~~~~~~~~   95 (180)
T PRK03839         74 -----LSHLLPVDYVIVLRAHPKIIKE   95 (180)
T ss_pred             -----cccccCCCEEEEEECCHHHHHH
Confidence                 1123347899999997644333

>PRK14530 adenylate kinase; Provisional

Probab=99.40  E-value=2.8e-12  Score=108.58  Aligned_cols=105  Identities=11%  Similarity=0.044  Sum_probs=70.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchH---------HHHHHHHHHHHHH-h
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK---------GYQQAETEVLKQL-S  161 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~---------~fr~~E~~vL~~L-~  161 (212)
                      .+.+|+|+|+|||||||+|+.||+.+|++++++|+++++..+ .++.++....|..         .-.+.+..+++.. .
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999998764 3443333322221         1122444555544 3


Q ss_pred             cCCCEEEEeCCceeechhhHHhc----cCCeEEEEEechhhhh
Q 028227          162 SMGRLVVCAGNGAVQSSANLYEI----SGTFKTWNIIMDRRSS  200 (212)
Q Consensus       162 ~~~~~VVa~GgG~V~~~~~~~~L----~~g~vV~Ld~~~~~v~  200 (212)
                      ...++|++   |......+.+.|    ..+.+|||+++.+.+.
T Consensus        81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~  120 (215)
T PRK14530         81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELV  120 (215)
T ss_pred             cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence            35678885   444444444444    2689999999865443

>PRK06217 hypothetical protein; Validated

Probab=99.37  E-value=1.3e-12  Score=108.02  Aligned_cols=92  Identities=15%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ++|+|+|++||||||+|+.||+.+|++++|+|.++++..+ .+..    ..+...  +.+..+++.+....+|||+ |+ 
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~~~----~~~~~~--~~~~~~~~~~~~~~~~vi~-G~-   72 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PPFT----TKRPPE--ERLRLLLEDLRPREGWVLS-GS-   72 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CCcc----ccCCHH--HHHHHHHHHHhcCCCEEEE-cc-
Confidence            4699999999999999999999999999999999986543 2211    112221  2234455566556788987 22 


Q ss_pred             eeechhhHHhcc-CCeEEEEEech
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIMD  196 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~~  196 (212)
                       +.. .....+. .+.+|||+++.
T Consensus        73 -~~~-~~~~~~~~~d~~i~Ld~~~   94 (183)
T PRK06217         73 -ALG-WGDPLEPLFDLVVFLTIPP   94 (183)
T ss_pred             -HHH-HHHHHHhhCCEEEEEECCH
Confidence             222 1112333 78999999964

>PRK14532 adenylate kinase; Provisional

Probab=99.37  E-value=1.8e-12  Score=106.89  Aligned_cols=100  Identities=15%  Similarity=0.097  Sum_probs=65.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-C----CchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~----~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa  169 (212)
                      +|+|+|+|||||||+|+.||+.+|+.++++|+++.+... +    ..+.++++ .|+..+.+...+++.....    .+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~~   76 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLP----EAE   76 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHh----CcC
Confidence            699999999999999999999999999999999887531 1    23444454 4655555554555544332    233


Q ss_pred             eCCceeech-----h---hH-Hhcc-----CCeEEEEEechhhh
Q 028227          170 AGNGAVQSS-----A---NL-YEIS-----GTFKTWNIIMDRRS  199 (212)
Q Consensus       170 ~GgG~V~~~-----~---~~-~~L~-----~g~vV~Ld~~~~~v  199 (212)
                      +++|++++.     .   .+ +++.     -+.+|||+++.+.+
T Consensus        77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~  120 (188)
T PRK14532         77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL  120 (188)
T ss_pred             ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence            455666542     1   11 1232     24799999986543

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.6e-12  Score=108.38  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=81.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH-----HHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEE
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~-----~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV  168 (212)
                      -.|+++|++||||||+|++|+++|+++|+|.|+++     +++..|.++.   ++..+.|+...-..+.+.+.+....|+
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vVl   89 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVVL   89 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEEE
Confidence            47899999999999999999999999999999994     4444334443   456788888888888888888788999


Q ss_pred             EeCCceeechhhHHhccC------------C--eEEEEEechhhhhcccC
Q 028227          169 CAGNGAVQSSANLYEISG------------T--FKTWNIIMDRRSSRHGS  204 (212)
Q Consensus       169 a~GgG~V~~~~~~~~L~~------------g--~vV~Ld~~~~~v~R~~~  204 (212)
                      +|+.   +...+|++|++            .  .+|||..+++.+..++.
T Consensus        90 ACSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~  136 (191)
T KOG3354|consen   90 ACSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLK  136 (191)
T ss_pred             EhHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHh
Confidence            9874   77788888873            1  47888887765544443

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=6.9e-13  Score=130.27  Aligned_cols=82  Identities=26%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             cccccccCCCceeecccccCCCccccceec--cCCc---------c----hHHHHHHHHH------hcccCCcEEEEEcc
Q 028227           43 LQYSIISRKPRITTRSIADDTTSNTVTKVA--AEDP---------S----FAVKKKAADI------STELKGTSVFLVGM  101 (212)
Q Consensus        43 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~d~---------~----~~lk~~~~~~------~~~l~~~~I~LvG~  101 (212)
                      ++.-+..+++|.+||||+||.|+.||++.+  ++|.         +    .++|+|+.|+      .+..+|+.+.|+||
T Consensus       367 L~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GP  446 (906)
T KOG2004|consen  367 LKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGP  446 (906)
T ss_pred             HhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCC
Confidence            455588999999999999999999999998  3333         2    5899999997      67778999999999


Q ss_pred             CCCCHHHHHHHHHHHhCCcEeeh
Q 028227          102 NNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus       102 ~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ||+|||++||.+|++||..|+..
T Consensus       447 PGVGKTSI~kSIA~ALnRkFfRf  469 (906)
T KOG2004|consen  447 PGVGKTSIAKSIARALNRKFFRF  469 (906)
T ss_pred             CCCCcccHHHHHHHHhCCceEEE
Confidence            99999999999999999999864

>PRK08118 topology modulation protein; Reviewed

Probab=99.30  E-value=9.7e-12  Score=102.51  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      +.|+|+|+|||||||+|+.|++.+++++++.|.++++..+ ....       .    +...++++++...++||+.... 
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w-~~~~-------~----~~~~~~~~~~~~~~~wVidG~~-   68 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW-EGVP-------K----EEQITVQNELVKEDEWIIDGNY-   68 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC-cCCC-------H----HHHHHHHHHHhcCCCEEEeCCc-
Confidence            4799999999999999999999999999999999875321 1111       1    1223345566666789885221 


Q ss_pred             eeechhhHHhcc-CCeEEEEEec-----hhhhhccc
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIM-----DRRSSRHG  203 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~-----~~~v~R~~  203 (212)
                        .... ...+. .+.+|||+++     .+.++|..
T Consensus        69 --~~~~-~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         69 --GGTM-DIRLNAADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             --chHH-HHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence              1111 12233 7999999997     35555543

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=5.3e-12  Score=104.04  Aligned_cols=96  Identities=11%  Similarity=0.019  Sum_probs=66.3

Q ss_pred             EccCCCCHHHHHHHHHHHhCCcEeehhHHH-----HHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           99 VGMNNAIKTHLGKFLADALRYYYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        99 vG~~GsGKTTvak~LA~~lg~~~~d~D~l~-----~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      +|.+||||||+|+.||+++|++|+|.|+++     +++..|.++.   ++..+.|+...-..+.......+..||+|+  
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~---DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS--   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN---DDDRWPWLEALGDAAASLAQKNKHVVIACS--   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC---cchhhHHHHHHHHHHHHhhcCCCceEEecH--
Confidence            599999999999999999999999999984     4444345543   233445554444444433333344788886  


Q ss_pred             eeechhhHHhccC----CeEEEEEechhhhh
Q 028227          174 AVQSSANLYEISG----TFKTWNIIMDRRSS  200 (212)
Q Consensus       174 ~V~~~~~~~~L~~----g~vV~Ld~~~~~v~  200 (212)
                       .++..+|+.|+.    -..|||+.+++.+.
T Consensus        76 -ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~  105 (161)
T COG3265          76 -ALKRSYRDLLREANPGLRFVYLDGDFDLIL  105 (161)
T ss_pred             -HHHHHHHHHHhccCCCeEEEEecCCHHHHH
Confidence             378889999982    25788888765433

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.29  E-value=1.9e-11  Score=98.40  Aligned_cols=95  Identities=12%  Similarity=0.018  Sum_probs=66.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH-----H-hCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----A-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~-----~-~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa  169 (212)
                      |+|+|++||||||+++.|++.++++++|.|++...     . .| ...   .....+.+++..+..+...+......||+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~   76 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IPL---NDDDRWPWLQNLNDASTAAAAKNKVGIIT   76 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CCC---ChhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            57999999999999999999999999999997432     1 22 221   12345567777766666666655556777


Q ss_pred             eCCceeechhhHHhcc-C---CeEEEEEechh
Q 028227          170 AGNGAVQSSANLYEIS-G---TFKTWNIIMDR  197 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~-~---g~vV~Ld~~~~  197 (212)
                      ++   +....+++.++ .   ..+|||+++.+
T Consensus        77 ~t---~~~~~~r~~~~~~~~~~~~i~l~~~~e  105 (163)
T TIGR01313        77 CS---ALKRHYRDILREAEPNLHFIYLSGDKD  105 (163)
T ss_pred             ec---ccHHHHHHHHHhcCCCEEEEEEeCCHH
Confidence            75   24556666665 2   35799998754

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.27  E-value=3.4e-11  Score=98.45  Aligned_cols=104  Identities=17%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|++||||||+++.|++.+.     +.++|.|.+.+.. + ..-   +..............+.+.+...+..
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~-~-~~~---~~~~~~~~~~~~~~~l~~~l~~~g~~   80 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL-G-HYG---YDKQSRIEMALKRAKLAKFLADQGMI   80 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc-C-CCC---CCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            578999999999999999999999886     7889999876532 2 110   11111111111112223334445668


Q ss_pred             EEEeCCcee--echhhHHhccCCeEEEEEechhhhh
Q 028227          167 VVCAGNGAV--QSSANLYEISGTFKTWNIIMDRRSS  200 (212)
Q Consensus       167 VVa~GgG~V--~~~~~~~~L~~g~vV~Ld~~~~~v~  200 (212)
                      ||++|++.+  ....++..+...++|||+++.+...
T Consensus        81 VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~  116 (176)
T PRK05541         81 VIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELI  116 (176)
T ss_pred             EEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHH
Confidence            888876654  3344555555568999999764333

>PRK04182 cytidylate kinase; Provisional

Probab=99.25  E-value=5e-11  Score=96.19  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh---CCCchhhhhhhhchHHH---HHHHHHHHHHHh-cCCCEE
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA---GGESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRLV  167 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~---G~~si~ei~~~~Ge~~f---r~~E~~vL~~L~-~~~~~V  167 (212)
                      .|+|+|++||||||+|+.||+.+|++++|+|+++++..   | .+..++. +.++..+   +..+.. +..+. ..+++|
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~V   78 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERG-MSLEEFN-KYAEEDPEIDKEIDRR-QLEIAEKEDNVV   78 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcC-CCHHHHH-HHhhcCchHHHHHHHH-HHHHHhcCCCEE
Confidence            68999999999999999999999999999988766543   4 5555544 2333322   233333 33444 455666


Q ss_pred             EEeC-CceeechhhHHhccCCeEEEEEechh-hhhcccCC
Q 028227          168 VCAG-NGAVQSSANLYEISGTFKTWNIIMDR-RSSRHGSK  205 (212)
Q Consensus       168 Va~G-gG~V~~~~~~~~L~~g~vV~Ld~~~~-~v~R~~~~  205 (212)
                      |... ++.+...      ..+++|||+++.+ +++|...+
T Consensus        79 i~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r  112 (180)
T PRK04182         79 LEGRLAGWMAKD------YADLKIWLKAPLEVRAERIAER  112 (180)
T ss_pred             EEEeecceEecC------CCCEEEEEECCHHHHHHHHHhc
Confidence            6421 1222210      1578999999864 55555443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.21  E-value=8e-12  Score=103.63  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=68.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHH--------------
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLK--------------  158 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~--------------  158 (212)
                      +..|+|+||+||||||+++.|+..++..+++.|..+..... ....+.+...+++.++..|...+.              
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~   80 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI   80 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence            56899999999999999999999988889998887664432 223344444455556554433222              


Q ss_pred             ---HHhcCCCEEEEeCCceeechhhHHhcc-CCeEEEEEechhhhh
Q 028227          159 ---QLSSMGRLVVCAGNGAVQSSANLYEIS-GTFKTWNIIMDRRSS  200 (212)
Q Consensus       159 ---~L~~~~~~VVa~GgG~V~~~~~~~~L~-~g~vV~Ld~~~~~v~  200 (212)
                         .....+..||+.|++.+. ...+..+. ...+|||+++.+.+.
T Consensus        81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~  125 (186)
T PRK10078         81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILR  125 (186)
T ss_pred             HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHH
Confidence               222345567776654433 33455554 567899999865433

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.21  E-value=8.4e-12  Score=114.36  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCC------cEeehhHHH-----HHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~------~~~d~D~l~-----~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      ++|+|+|||||||+++.|++.+..      .++|.|+++     +...| +++++++     +.||+.    +..+.+  
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~-----k~~R~~----i~~~le--   69 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQW-----KQFRQE----LLKYLE--   69 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHH-----HHHHHH----HHHHHH--
Confidence            579999999999999999988764      489999999     55556 6777655     667743    333332  


Q ss_pred             CEEEEeCCceeech----------hhHHhcc-CCeEEEEEechh
Q 028227          165 RLVVCAGNGAVQSS----------ANLYEIS-GTFKTWNIIMDR  197 (212)
Q Consensus       165 ~~VVa~GgG~V~~~----------~~~~~L~-~g~vV~Ld~~~~  197 (212)
                      ..|+++|||+++.+          .|+..|+ +|++|||+++.+
T Consensus        70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e  113 (340)
T TIGR03575        70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEA  113 (340)
T ss_pred             HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHH
Confidence            45778899988743          4557776 899999999753

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.20  E-value=1.1e-10  Score=97.70  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhh--hchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRE--SDEKGYQQAETEVLKQLSSMGRLVVCA  170 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~--~Ge~~fr~~E~~vL~~L~~~~~~VVa~  170 (212)
                      .|.|-|+|||||||+++.||+.+|++++.+..++.+++.  ++++.++.+-  .+.+.=.+.. +-...++.++++||. 
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD-~rq~e~a~~~nvVle-   79 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEID-RRQKELAKEGNVVLE-   79 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHH-HHHHHHHHcCCeEEh-
Confidence            578999999999999999999999999999999987752  3888775432  2222212222 233444446777773 


Q ss_pred             CCceeechhhHHhc-c--CCeEEEEEech-hhhhcccCCCC
Q 028227          171 GNGAVQSSANLYEI-S--GTFKTWNIIMD-RRSSRHGSKNG  207 (212)
Q Consensus       171 GgG~V~~~~~~~~L-~--~g~vV~Ld~~~-~~v~R~~~~~~  207 (212)
                      |       ..-.|+ +  .++-|||++|. .|++|...+++
T Consensus        80 g-------rLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REg  113 (179)
T COG1102          80 G-------RLAGWIVREYADLKIWLKAPLEVRAERIAKREG  113 (179)
T ss_pred             h-------hhHHHHhccccceEEEEeCcHHHHHHHHHHhcC
Confidence            1       222233 2  78999999975 58888777653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.18  E-value=1.6e-10  Score=94.70  Aligned_cols=38  Identities=18%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +|+|+|+|||||||+|+.||+.+|+.+++.|+++++..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~   38 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI   38 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH
Confidence            48999999999999999999999999999999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02674 adenylate kinase

Probab=99.18  E-value=2e-10  Score=101.02  Aligned_cols=109  Identities=11%  Similarity=0.052  Sum_probs=74.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh------CCCchhhhhhhhchHHHHHHHHHHHHHHhcC---
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSM---  163 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~------G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~---  163 (212)
                      ..+|+|+|+|||||+|+|+.||+.+|+.++++++++.+..      | ..+.+++. .|+....+....++.+....   
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g-~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD-KGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh-HHHHHHHH-cCCccCHHHHHHHHHHHHhCcCc
Confidence            5789999999999999999999999999999999998763      3 44556654 67777777777766655432   


Q ss_pred             -CCEEEEeCCceeechhhHH----hcc-----CCeEEEEEechhhhhcccCCC
Q 028227          164 -GRLVVCAGNGAVQSSANLY----EIS-----GTFKTWNIIMDRRSSRHGSKN  206 (212)
Q Consensus       164 -~~~VVa~GgG~V~~~~~~~----~L~-----~g~vV~Ld~~~~~v~R~~~~~  206 (212)
                       .++|+.   |.+-+...-+    .+.     -+.+|+|+++.+.+.+++..+
T Consensus       109 ~~g~ilD---GfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR  158 (244)
T PLN02674        109 QKGFILD---GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR  158 (244)
T ss_pred             CCcEEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence             334553   2222211111    221     367999999876555555444

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.17  E-value=9.9e-11  Score=92.90  Aligned_cols=102  Identities=19%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH-----HhCCCchhhhhhhhchHHHHHHHHHHHHHHh-cCCCEEEE
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVVC  169 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~-----~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~-~~~~~VVa  169 (212)
                      |+|+|+|||||||+|+.|++.+++.++|.|.+...     ...+....   ....+.+++......+..+. ....+|+.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~vVid   78 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLASAGEGVVVA   78 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            78999999999999999999999999999999864     22212211   12234555665555555553 44567776


Q ss_pred             eCCceeechhhHHhccC------CeEEEEEechhhhhccc
Q 028227          170 AGNGAVQSSANLYEISG------TFKTWNIIMDRRSSRHG  203 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~~------g~vV~Ld~~~~~v~R~~  203 (212)
                      ++.   .....++.++.      ..+||++++.+.+.++.
T Consensus        79 ~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~  115 (150)
T cd02021          79 CSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERL  115 (150)
T ss_pred             ecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHH
Confidence            553   23444554441      36899999765444333

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.14  E-value=5.8e-11  Score=90.54  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      .|+|+|+|||||||+|+.||+.+|+++++.|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            4899999999999999999999999999999954

...

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2.4e-11  Score=119.53  Aligned_cols=79  Identities=25%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             ccccCCCceeecccccCCCccccceec--cCCcc-------------hHHHHHHHHH------hcccCCcEEEEEccCCC
Q 028227           46 SIISRKPRITTRSIADDTTSNTVTKVA--AEDPS-------------FAVKKKAADI------STELKGTSVFLVGMNNA  104 (212)
Q Consensus        46 ~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~d~~-------------~~lk~~~~~~------~~~l~~~~I~LvG~~Gs  104 (212)
                      -+..|+++.++|||+||....||++.+  .+|.+             ..+|+|+.|.      .+.++|..+.|+||||+
T Consensus       282 m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGV  361 (782)
T COG0466         282 MSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGV  361 (782)
T ss_pred             CCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCC
Confidence            367899999999999999999999998  44443             4789998885      77889999999999999


Q ss_pred             CHHHHHHHHHHHhCCcEeeh
Q 028227          105 IKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus       105 GKTTvak~LA~~lg~~~~d~  124 (212)
                      |||++|+.+|+++|..|+..
T Consensus       362 GKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         362 GKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             CchhHHHHHHHHhCCCEEEE
Confidence            99999999999999999854

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.11  E-value=4.5e-10  Score=95.12  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +|+|+|+|||||||+|+.||+.+|++++++++++++..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~   39 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAV   39 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHH
Confidence            69999999999999999999999999999988887653

>TIGR01351 adk adenylate kinases

Probab=99.11  E-value=5.3e-10  Score=94.38  Aligned_cols=38  Identities=16%  Similarity=0.134  Sum_probs=35.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +|+|+|+|||||||+|+.||+.+|++++++++++++..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~   38 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEI   38 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhh
Confidence            38999999999999999999999999999999987654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.09  E-value=6.3e-10  Score=96.68  Aligned_cols=104  Identities=8%  Similarity=0.039  Sum_probs=63.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC-Cch----hhhhhhhch----HHHHHHHHHHHHHHh--
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESA----AKAFRESDE----KGYQQAETEVLKQLS--  161 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~-~si----~ei~~~~Ge----~~fr~~E~~vL~~L~--  161 (212)
                      +.+|+|+|+|||||||+|+.||+.+|++++++|+++++.... .++    .+++.+ |.    +.....-.+.+.++.  
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhccc
Confidence            567999999999999999999999999999999999876431 122    222222 31    222233333333321  


Q ss_pred             cCCCEEEEeCCceeechhhHHhc----cCCeEEEEEechhhhh
Q 028227          162 SMGRLVVCAGNGAVQSSANLYEI----SGTFKTWNIIMDRRSS  200 (212)
Q Consensus       162 ~~~~~VVa~GgG~V~~~~~~~~L----~~g~vV~Ld~~~~~v~  200 (212)
                      ...++|+.   |.+-.......|    +-..+|||+++...+.
T Consensus        85 ~~~g~iLD---GfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~  124 (229)
T PTZ00088         85 CFKGFILD---GFPRNLKQCKELGKITNIDLFVNIYLPRNILI  124 (229)
T ss_pred             cCceEEEe---cCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHH
Confidence            12456664   232222222222    2468999999864333

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.09  E-value=8.9e-11  Score=113.87  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC------cEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHH-HHHHhcCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV-LKQLSSMG  164 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~------~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~v-L~~L~~~~  164 (212)
                      ++..|+|+|+|||||||+|+.||+.++.      .++|.|.+...+.|.            ..|++.|.+. +..+....
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge------------~~f~~~er~~~~~~l~~~a  458 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSE------------LGFSKEDRDLNILRIGFVA  458 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCC------------CCCCHHHHHHHHHHHHHHH
Confidence            4779999999999999999999999996      999999886654431            1222222211 11111111


Q ss_pred             CEEEEeCCceeec---------hhhHHhcc-CC--eEEEEEechh
Q 028227          165 RLVVCAGNGAVQS---------SANLYEIS-GT--FKTWNIIMDR  197 (212)
Q Consensus       165 ~~VVa~GgG~V~~---------~~~~~~L~-~g--~vV~Ld~~~~  197 (212)
                      ..++++|++++++         ..++++++ .+  ++|||+++.+
T Consensus       459 ~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e  503 (568)
T PRK05537        459 SEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLE  503 (568)
T ss_pred             HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHH
Confidence            2234444444444         46777776 34  5899999754

>PRK07261 topology modulation protein; Provisional

Probab=99.09  E-value=1.9e-10  Score=94.88  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      +.|+|+|++||||||+++.|++.+++++++.|.+.+.... .       +...+.+..    .+..+..++.||+.   |
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-~-------~~~~~~~~~----~~~~~~~~~~wIid---g   65 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-Q-------ERDDDDMIA----DISNFLLKHDWIID---G   65 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-c-------cCCHHHHHH----HHHHHHhCCCEEEc---C
Confidence            3699999999999999999999999999999998764211 1       112222222    22333345668884   3


Q ss_pred             eeechhhHHhc-cCCeEEEEEec-----hhhhhccc
Q 028227          174 AVQSSANLYEI-SGTFKTWNIIM-----DRRSSRHG  203 (212)
Q Consensus       174 ~V~~~~~~~~L-~~g~vV~Ld~~-----~~~v~R~~  203 (212)
                      ..........+ ..+.+|||+++     .+.++|..
T Consensus        66 ~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         66 NYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             cchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHH
Confidence            33221212233 37899999986     35666654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.08  E-value=6.6e-10  Score=90.42  Aligned_cols=39  Identities=13%  Similarity=0.175  Sum_probs=35.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ...|+|+|+|||||||+++.||+.+|+.++++|+++.+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~   41 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAE   41 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            467899999999999999999999999999999887665

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.08  E-value=7.4e-10  Score=86.37  Aligned_cols=39  Identities=28%  Similarity=0.279  Sum_probs=36.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      .|+++|+|||||||+++.|++.+++.+++.|.+.....+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~   39 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG   39 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc
Confidence            378999999999999999999999999999999988865

...

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.07  E-value=1e-09  Score=89.63  Aligned_cols=106  Identities=12%  Similarity=0.125  Sum_probs=62.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCc----hhhhhhhhchHHHHHHHHHHHHHHhc---CCCEE
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES----AAKAFRESDEKGYQQAETEVLKQLSS---MGRLV  167 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~s----i~ei~~~~Ge~~fr~~E~~vL~~L~~---~~~~V  167 (212)
                      |+|+|+|||||||+|+.||+++|+.++++++++++... +..    +.+++ ..|...-.+...++++....   ..++|
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            78999999999999999999999999999888775532 112    22222 22333323333444444332   23455


Q ss_pred             EEeCCceeechhhHH----hc----cCCeEEEEEechh-hhhcccCC
Q 028227          168 VCAGNGAVQSSANLY----EI----SGTFKTWNIIMDR-RSSRHGSK  205 (212)
Q Consensus       168 Va~GgG~V~~~~~~~----~L----~~g~vV~Ld~~~~-~v~R~~~~  205 (212)
                      |.   |.+.+.....    ++    .-+++|||+++.+ .++|...+
T Consensus        81 lD---g~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R  124 (183)
T TIGR01359        81 ID---GFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKR  124 (183)
T ss_pred             Ee---CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcC
Confidence            53   2222222222    22    2357999999865 34444433

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.07  E-value=1.8e-09  Score=86.57  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhc-hHHHHHHHHHHHHHHh-cCCCEEEEe
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESD-EKGYQQAETEVLKQLS-SMGRLVVCA  170 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~G-e~~fr~~E~~vL~~L~-~~~~~VVa~  170 (212)
                      .|.|+|++||||||+|+.||+.+|++++|.|+++++...  +.+..++..... .......-.+.+..+. ..+++||. 
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~-   80 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE-   80 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE-
Confidence            589999999999999999999999999999988776642  133332221110 0111222222333343 45667774 


Q ss_pred             CCceeechhhHHhcc--CCeEEEEEechh-hhhcccCCC
Q 028227          171 GNGAVQSSANLYEIS--GTFKTWNIIMDR-RSSRHGSKN  206 (212)
Q Consensus       171 GgG~V~~~~~~~~L~--~g~vV~Ld~~~~-~v~R~~~~~  206 (212)
                      |.+.     .+ .++  .+++|||+++.+ +++|...++
T Consensus        81 g~~~-----~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        81 SRLA-----GW-IVREYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             eccc-----ce-eecCCcCEEEEEECCHHHHHHHHHHcc
Confidence            3211     11 112  468999999864 556655443

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.07  E-value=7.8e-10  Score=86.28  Aligned_cols=99  Identities=19%  Similarity=0.254  Sum_probs=61.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCcee
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAV  175 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~V  175 (212)
                      |+|+|++||||||+|+.||+.+|++++|.|.+..+..+ ......   .....+++...+.+.++...++|||. |-.  
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~Vid-g~~--   74 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEV---AAIPEVRKALDERQRELAKKPGIVLE-GRD--   74 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHh---cccHhHHHHHHHHHHHHhhCCCEEEE-eee--
Confidence            78999999999999999999999999999965443322 000010   01123444445556667666778884 211  


Q ss_pred             echhhHHhcc-CCeEEEEEechh-hhhcccC
Q 028227          176 QSSANLYEIS-GTFKTWNIIMDR-RSSRHGS  204 (212)
Q Consensus       176 ~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~~  204 (212)
                      .   .+.++. .+++|||+.+.+ +++|...
T Consensus        75 ~---~~~~~~~~~~~i~l~~~~~~r~~R~~~  102 (147)
T cd02020          75 I---GTVVFPDADLKIFLTASPEVRAKRRAK  102 (147)
T ss_pred             e---eeEEcCCCCEEEEEECCHHHHHHHHHH
Confidence            1   111123 579999999753 4444433

>PRK14531 adenylate kinase; Provisional

Probab=99.06  E-value=1.3e-09  Score=90.20  Aligned_cols=38  Identities=16%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .+|+|+|+|||||||+++.||+.+|++++++++++.+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~   40 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE   40 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence            57999999999999999999999999999998777654

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.04  E-value=1.3e-09  Score=95.82  Aligned_cols=107  Identities=10%  Similarity=-0.021  Sum_probs=62.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHhCCCchh-hhhhhhchHHHHHHHHHHHHHHhc-CCCEEEEe
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA  170 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~~~G~~si~-ei~~~~Ge~~fr~~E~~vL~~L~~-~~~~VVa~  170 (212)
                      +.|+++|+|||||||+|+.|++.+ ++.+++.|.+.+...+..... ..+...++...++.....++.... ...+||++
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~   82 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD   82 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence            578999999999999999999999 899999999887765421111 111222333333444444444433 34466654


Q ss_pred             CCceeechhhHH-hcc-CC---eEEEEEechhhhh
Q 028227          171 GNGAVQSSANLY-EIS-GT---FKTWNIIMDRRSS  200 (212)
Q Consensus       171 GgG~V~~~~~~~-~L~-~g---~vV~Ld~~~~~v~  200 (212)
                      ..........+. +++ .+   .+|||+++.+.+.
T Consensus        83 ~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~  117 (300)
T PHA02530         83 TNLNPERRRKWKELAKELGAEFEEKVFDVPVEELV  117 (300)
T ss_pred             CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHH
Confidence            432211122222 222 22   2688888754333

>PRK06547 hypothetical protein; Provisional

Probab=99.01  E-value=2.2e-10  Score=95.27  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCc-----hhhhhhhhchHHHHHHH--HHHHHH--Hhc
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAE--TEVLKQ--LSS  162 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~s-----i~ei~~~~Ge~~fr~~E--~~vL~~--L~~  162 (212)
                      ....|.|.|++||||||+++.||+.+++++++.|+++....+ .+     +.+.+.+.|+..++...  ......  ...
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~   92 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVE   92 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeC
Confidence            356788889999999999999999999999999998864332 21     11222222322211100  000000  111


Q ss_pred             CCCEEEEeCCceeechhhHHhcc-CC--eEEEEEech-hhhhcccCC
Q 028227          163 MGRLVVCAGNGAVQSSANLYEIS-GT--FKTWNIIMD-RRSSRHGSK  205 (212)
Q Consensus       163 ~~~~VVa~GgG~V~~~~~~~~L~-~g--~vV~Ld~~~-~~v~R~~~~  205 (212)
                      .+..||..|.++. ...+++++. ++  +.|||+++. .+.+|...+
T Consensus        93 ~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         93 PGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             CCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence            2456777777765 456677774 44  789999975 355554444

>PRK01184 hypothetical protein; Provisional

Probab=99.00  E-value=3.1e-09  Score=87.28  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|+|+|+|||||||+++ +++.+|++++++|+++.+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~   39 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEV   39 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHH
Confidence            378999999999999998 78899999999988776653

>PRK06762 hypothetical protein; Provisional

Probab=98.97  E-value=3.5e-09  Score=85.44  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=36.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l--g~~~~d~D~l~~~~~G  133 (212)
                      ++.|+|+|+|||||||+|+.|++.+  ++.+++.|.+.....+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~   44 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLR   44 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcc
Confidence            4689999999999999999999998  6788999998876654

>PRK02496 adk adenylate kinase; Provisional

Probab=98.95  E-value=6.1e-09  Score=85.68  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .+|+|+|+|||||||+++.||+.+|+++++.|+++.+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~   40 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAI   40 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHH
Confidence            468999999999999999999999999999999987654

>PRK13975 thymidylate kinase; Provisional

Probab=98.94  E-value=8.2e-10  Score=91.09  Aligned_cols=100  Identities=23%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhHHHH----HHhCC-----CchhhhhhhhchHHHHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF----EAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS  161 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~l~~----~~~G~-----~si~ei~~~~Ge~~fr~~E~~vL~~L~  161 (212)
                      +..|+|.|++||||||+++.||+.++  +.+.+.|..+.    +....     .....+|...+++.|++.|..    +.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~   77 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK   77 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence            36799999999999999999999999  44556554432    22211     112234555555555543332    22


Q ss_pred             cCCCEEEEe-----------CCceeec---hhhHHhccCCeEEEEEechhh
Q 028227          162 SMGRLVVCA-----------GNGAVQS---SANLYEISGTFKTWNIIMDRR  198 (212)
Q Consensus       162 ~~~~~VVa~-----------GgG~V~~---~~~~~~L~~g~vV~Ld~~~~~  198 (212)
                       . ..||+-           ++|....   ..+...++.+.+|||+++.+.
T Consensus        78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~  126 (196)
T PRK13975         78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEE  126 (196)
T ss_pred             -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHH
Confidence             2 345542           2232211   112112346899999997643

>PRK14527 adenylate kinase; Provisional

Probab=98.94  E-value=7.2e-09  Score=86.12  Aligned_cols=41  Identities=20%  Similarity=0.207  Sum_probs=37.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +++.|+++|+|||||||+++.||+.+|+.+++.|+++.+..
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~   45 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHV   45 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            46789999999999999999999999999999999987654

>PRK13808 adenylate kinase; Provisional

Probab=98.94  E-value=5.3e-09  Score=95.83  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|+|+|+|||||||+++.||+.+|+.+++.|+++.+.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~   38 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAA   38 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHH
Confidence            6899999999999999999999999999999998765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.93  E-value=1.6e-10  Score=113.49  Aligned_cols=102  Identities=15%  Similarity=0.147  Sum_probs=79.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchh-hhhhhhchHHHHHHHHHHHHHHhc-CCCEEEE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVC  169 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~-ei~~~~Ge~~fr~~E~~vL~~L~~-~~~~VVa  169 (212)
                      ....|+++|+||+||||+|+.|++.++|.++|+|.+.....+ ..+. +.+...++..++..|.+++..+.. ...+|++
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~  292 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICK  292 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            346899999999999999999999999999998888776555 3333 445556777888888888887775 4567888


Q ss_pred             eCCceeechhhHHhcc----------CC-----eEEEEEe
Q 028227          170 AGNGAVQSSANLYEIS----------GT-----FKTWNII  194 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~----------~g-----~vV~Ld~  194 (212)
                      +|+++|++..|+..++          .+     .+|||++
T Consensus       293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~  332 (664)
T PTZ00322        293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV  332 (664)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE
Confidence            8888898886655443          12     5999998

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.93  E-value=9.1e-09  Score=84.00  Aligned_cols=101  Identities=18%  Similarity=0.201  Sum_probs=60.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|+|||||||+++.|+..+     ++.++|.|.+.+....+...   ..+..+.+++... .+.+.+...+. 
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~---~~~~r~~~~~~~~-~~a~~~~~~g~-   77 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGF---SKEDRDTNIRRIG-FVANLLTRHGV-   77 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCC---ChhhHHHHHHHHH-HHHHHHHhCCC-
Confidence            47899999999999999999999988     36789999987655421111   1112233444332 22233333333 


Q ss_pred             EEEeCCceeechhhHHhcc----CCeEEEEEechhh
Q 028227          167 VVCAGNGAVQSSANLYEIS----GTFKTWNIIMDRR  198 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~L~----~g~vV~Ld~~~~~  198 (212)
                      +|.+++... ....++.++    ...+|||+++.+.
T Consensus        78 ~vi~~~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~  112 (175)
T PRK00889         78 IVLVSAISP-YRETREEVRANIGNFLEVFVDAPLEV  112 (175)
T ss_pred             EEEEecCCC-CHHHHHHHHhhcCCeEEEEEcCCHHH
Confidence            443333322 334455443    4579999997654

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.92  E-value=8.9e-09  Score=86.28  Aligned_cols=102  Identities=18%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|++||||||+++.|+..+     +..++|.|.+.+...+.  +. +..+...+.++... .+...+...+..
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~--~~-~~~~~~~~~~~~l~-~~a~~~~~~G~~   98 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD--LG-FSDADRKENIRRVG-EVAKLMVDAGLV   98 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc--CC-cCcccHHHHHHHHH-HHHHHHhhCCCE
Confidence            57899999999999999999999986     46889999987654331  11 11111223343322 233444445555


Q ss_pred             EEEeCCce--eechhhHHhcc-CCe-EEEEEechh
Q 028227          167 VVCAGNGA--VQSSANLYEIS-GTF-KTWNIIMDR  197 (212)
Q Consensus       167 VVa~GgG~--V~~~~~~~~L~-~g~-vV~Ld~~~~  197 (212)
                      ||+...+.  -.....+++++ .++ +|||+++.+
T Consensus        99 VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e  133 (198)
T PRK03846         99 VLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLA  133 (198)
T ss_pred             EEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHH
Confidence            55422110  11223444554 455 799999864

>PRK14528 adenylate kinase; Provisional

Probab=98.91  E-value=1.2e-08  Score=85.10  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ++|+|+|+|||||||+++.||+.+|++++++|+++.+..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~   40 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV   40 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence            469999999999999999999999999999999987654

>PLN02200 adenylate kinase family protein

Probab=98.89  E-value=1.7e-08  Score=87.71  Aligned_cols=40  Identities=10%  Similarity=0.125  Sum_probs=36.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +..|+|+|+|||||||+|+.||+.+|+.++++++++.+..
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i   82 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREI   82 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHH
Confidence            4689999999999999999999999999999988887654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.88  E-value=9.8e-09  Score=88.76  Aligned_cols=99  Identities=14%  Similarity=0.040  Sum_probs=62.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA  170 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~  170 (212)
                      |+|+|+|||||||+|+.||+.++     +.+++.|.+.+....       ....++..+++.+..+++.....+.+||..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D   74 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEFIRDSTLYLIKTALKNKYSVIVD   74 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            78999999999999999999873     456677776554311       112345666776667777777666677766


Q ss_pred             CCceeechhhHHh---cc-C---CeEEEEEechh-hhhcc
Q 028227          171 GNGAVQSSANLYE---IS-G---TFKTWNIIMDR-RSSRH  202 (212)
Q Consensus       171 GgG~V~~~~~~~~---L~-~---g~vV~Ld~~~~-~v~R~  202 (212)
                      ++. .....-.++   .+ .   ..+||++++.+ ..+|.
T Consensus        75 ~~~-~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn  113 (249)
T TIGR03574        75 DTN-YYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRN  113 (249)
T ss_pred             ccc-hHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHH
Confidence            543 222211222   22 2   36899999754 33443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.87  E-value=9.3e-09  Score=85.03  Aligned_cols=105  Identities=22%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      +|..|+|+|.+||||||+|+.|.++|     ...++|.|.+...+.  .++.  |...+.......-.++.+.|...+..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~dl~--fs~~dR~e~~rr~~~~A~ll~~~G~i   76 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--ADLG--FSKEDREENIRRIAEVAKLLADQGII   76 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--TT----SSHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--CCCC--CCHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            46789999999999999999999887     467899999876432  2221  22223222223335566667777777


Q ss_pred             EEEeCCceeechhhHHhcc----C--CeEEEEEechh-hhhcc
Q 028227          167 VVCAGNGAVQSSANLYEIS----G--TFKTWNIIMDR-RSSRH  202 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~L~----~--g~vV~Ld~~~~-~v~R~  202 (212)
                      ||++--  ......+++.+    .  -+.|||+++.+ ..+|.
T Consensus        77 vIva~i--sp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   77 VIVAFI--SPYREDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             EEEeec--cCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence            775422  22344444443    3  47899999754 44554

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14526 adenylate kinase; Provisional

Probab=98.85  E-value=2e-08  Score=86.22  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=34.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|+|+|+|||||||+++.||+.+++.++++++++.+.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~   38 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFREN   38 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHh
Confidence            5899999999999999999999999999999998765

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.85  E-value=3.2e-08  Score=82.30  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH------HhCCCchhhhhhhhchHHHH-HHHHHHHHHHhc-
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQ-QAETEVLKQLSS-  162 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~------~~G~~si~ei~~~~Ge~~fr-~~E~~vL~~L~~-  162 (212)
                      +.|..++|+|++||||||+++.|+..++..++|.|.+...      ..| ...    .+.....|. .....++..+.. 
T Consensus         1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~~----~~~~~~~~~~~~~~~~~~~~~~~   75 (176)
T PRK09825          1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IPL----TDEDRLPWLERLNDASYSLYKKN   75 (176)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CCC----CcccchHHHHHHHHHHHHHHhcC
Confidence            3578899999999999999999999999999999986321      122 111    111111233 333333222221 


Q ss_pred             CCCEEEEeCCceeechhhHHhcc-C---CeEEEEEechhhhhcc
Q 028227          163 MGRLVVCAGNGAVQSSANLYEIS-G---TFKTWNIIMDRRSSRH  202 (212)
Q Consensus       163 ~~~~VVa~GgG~V~~~~~~~~L~-~---g~vV~Ld~~~~~v~R~  202 (212)
                      .+++|+ |+   .+....++.++ .   -..|||+++.+.+.++
T Consensus        76 ~~g~iv-~s---~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~R  115 (176)
T PRK09825         76 ETGFIV-CS---SLKKQYRDILRKSSPNVHFLWLDGDYETILAR  115 (176)
T ss_pred             CCEEEE-EE---ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHH
Confidence            244555 43   24556677666 2   2689999876544333

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.84  E-value=9.7e-09  Score=84.13  Aligned_cols=97  Identities=13%  Similarity=0.053  Sum_probs=58.7

Q ss_pred             EccCCCCHHHHHHHHHHHhCCcEeehhHHHH------HHhCCCchhhhhhhhch-HHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF------EAAGGESAAKAFRESDE-KGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        99 vG~~GsGKTTvak~LA~~lg~~~~d~D~l~~------~~~G~~si~ei~~~~Ge-~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      +|++||||||+++.|+..+|..++|.|.+..      ...| ..    +.+.+. .+....+..++..+...+..||.|+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s   75 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EP----LNDDDRKPWLQALNDAAFAMQRTNKVSLIVCS   75 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CC----CChhhHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence            5999999999999999999999999998632      1122 22    222222 3334444444443433344455443


Q ss_pred             CceeechhhHHhcc-C---CeEEEEEechhhhhccc
Q 028227          172 NGAVQSSANLYEIS-G---TFKTWNIIMDRRSSRHG  203 (212)
Q Consensus       172 gG~V~~~~~~~~L~-~---g~vV~Ld~~~~~v~R~~  203 (212)
                      .   .....++.++ .   -..|||+++.+.++++.
T Consensus        76 ~---~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl  108 (163)
T PRK11545         76 A---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRL  108 (163)
T ss_pred             c---chHHHHHHHHccCCCEEEEEEECCHHHHHHHH
Confidence            2   3455666665 2   36799999765444333

>PLN02459 probable adenylate kinase

Probab=98.82  E-value=3.2e-08  Score=87.98  Aligned_cols=39  Identities=18%  Similarity=0.113  Sum_probs=35.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .+|+|+|+|||||+|+|+.||+.+|+.++++++++.+..
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei   68 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEI   68 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHH
Confidence            579999999999999999999999999999999987653

>PLN02165 adenylate isopentenyltransferase

Probab=98.79  E-value=2e-08  Score=92.10  Aligned_cols=83  Identities=18%  Similarity=0.275  Sum_probs=63.1

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--------------HHHHhCCCc---hhhhhhhhch---HHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRESDE---KGYQ  150 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--------------~~~~~G~~s---i~ei~~~~Ge---~~fr  150 (212)
                      .++..|+|+||+|||||+++..||+.+++.++++|.+              .++..| ..   +..+....+.   ..|+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHHHH
Confidence            3577899999999999999999999999999999998              455544 22   2222222223   6788


Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCce
Q 028227          151 QAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus       151 ~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      +.+.++++++...+..+|.+||+.
T Consensus       120 ~~a~~~I~~i~~~~~~PI~vGGTg  143 (334)
T PLN02165        120 SLASLSISEITSRQKLPIVAGGSN  143 (334)
T ss_pred             HHHHHHHHHHHHCCCcEEEECChH
Confidence            888888888887788888888754

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.79  E-value=3.4e-08  Score=81.03  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=33.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~  131 (212)
                      +++.|+|+|+|||||||+++.|++.++.+++  +.|.++...
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~   42 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL   42 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhc
Confidence            3678999999999999999999999876655  788887643

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR00017 cmk cytidylate kinase

Probab=98.79  E-value=7.4e-08  Score=82.93  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=34.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ..|.|.|++||||||+++.||+.+|++++|.|.++...
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            47999999999999999999999999999999886543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.78  E-value=1.6e-08  Score=82.55  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=23.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..|+|+|++||||||+++.|+..++.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            357899999999999999999998753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.77  E-value=2.1e-08  Score=84.18  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=35.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|.|+|++||||||+++.|++ +|++++|+|.+.++.+
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~   40 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVV   40 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHh
Confidence            4799999999999999999998 9999999999998875

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.77  E-value=2.6e-08  Score=79.56  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=32.7

Q ss_pred             EEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        98 LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      |+|+|||||+|+|+.||+.+|+.+++.++++++..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~   35 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEI   35 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHH
Confidence            68999999999999999999999999999988664

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=98.76  E-value=5.4e-09  Score=104.91  Aligned_cols=77  Identities=22%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             cccCCCceeecccccCCCccccceecc--CCcc-------------hHHHHHHHHH------hcccCCcEEEEEccCCCC
Q 028227           47 IISRKPRITTRSIADDTTSNTVTKVAA--EDPS-------------FAVKKKAADI------STELKGTSVFLVGMNNAI  105 (212)
Q Consensus        47 ~~~~~~~~~t~~~~~~~~~~~~~~~~~--~d~~-------------~~lk~~~~~~------~~~l~~~~I~LvG~~GsG  105 (212)
                      ...||+|.++|+|+||..+.||++.+.  .|..             ..+|+++.++      .+..++..++|+||||+|
T Consensus       282 ~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~G  361 (784)
T PRK10787        282 SPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVG  361 (784)
T ss_pred             CCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCC
Confidence            567899999999999999999999883  3332             3677777764      233567899999999999


Q ss_pred             HHHHHHHHHHHhCCcEee
Q 028227          106 KTHLGKFLADALRYYYFD  123 (212)
Q Consensus       106 KTTvak~LA~~lg~~~~d  123 (212)
                      |||+++.+|+.++.+|+.
T Consensus       362 KTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        362 KTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999998863

>PRK04040 adenylate kinase; Provisional

Probab=98.74  E-value=1.6e-07  Score=79.09  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=35.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAA  132 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l--g~~~~d~D~l~~~~~  132 (212)
                      ++.|+|+|+|||||||+++.|++.+  ++.+++.|+++.+.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a   43 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA   43 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence            4689999999999999999999999  899999999976543

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.74  E-value=3.7e-08  Score=81.40  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      |.|+|++||||||+++.|++ +|++++|+|.+.++.+.
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~   38 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE   38 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence            78999999999999999999 99999999999887753

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14529 adenylate kinase; Provisional

Probab=98.74  E-value=5.5e-08  Score=84.49  Aligned_cols=102  Identities=11%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCc----hhhhhhhhchHHHHHHHHHHHH-HHhc--CCCE
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES----AAKAFRESDEKGYQQAETEVLK-QLSS--MGRL  166 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~s----i~ei~~~~Ge~~fr~~E~~vL~-~L~~--~~~~  166 (212)
                      +|+|+|+|||||||+++.||+.+++++++..+++.+... +..    +.+++ +.|.....+.-..++. .|..  ..++
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCcE
Confidence            689999999999999999999999999999888876542 122    22333 2343333333333333 3322  2456


Q ss_pred             EEEeCCceeechhhHHh----c-----cCCeEEEEEechhhhh
Q 028227          167 VVCAGNGAVQSSANLYE----I-----SGTFKTWNIIMDRRSS  200 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~----L-----~~g~vV~Ld~~~~~v~  200 (212)
                      |+.   |.+-+...-+.    +     .-+.+|+|+++.+.+.
T Consensus        81 iLD---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~  120 (223)
T PRK14529         81 LLD---GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAK  120 (223)
T ss_pred             EEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHH
Confidence            663   44333222222    2     1368999999865443

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.73  E-value=5.3e-08  Score=83.49  Aligned_cols=57  Identities=12%  Similarity=0.042  Sum_probs=46.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCC-chhhhhhhhchHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDEKGY  149 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~-si~ei~~~~Ge~~f  149 (212)
                      +..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+... -..++++..|++.+
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~   63 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIV   63 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhc
Confidence            4579999999999999999999999999999999999886521 23456666666544

>TIGR00152 dephospho-CoA kinase

Probab=98.70  E-value=7.3e-08  Score=79.91  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=35.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      .|.|+|.+||||||+++.|++..|++++|+|.+.++.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~   39 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVE   39 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHh
Confidence            378999999999999999999877999999999887653

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.67  E-value=2.2e-08  Score=93.18  Aligned_cols=52  Identities=25%  Similarity=0.176  Sum_probs=42.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhchH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK  147 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge~  147 (212)
                      .|.|+|++||||||+++.|++ +|++++|+|.+.++.+.  .....++++..|+.
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~   56 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDD   56 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChH
Confidence            699999999999999999998 89999999999998763  12335666666665

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.66  E-value=2.4e-07  Score=79.88  Aligned_cols=40  Identities=23%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~  130 (212)
                      |++..|.|.|++||||||+|+.||+.+|++|+|.|.++..
T Consensus         2 ~~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          2 MKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            3457899999999999999999999999999999998654

>PRK08233 hypothetical protein; Provisional

Probab=98.64  E-value=7.5e-08  Score=77.92  Aligned_cols=36  Identities=19%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-~~~~d~D~l  127 (212)
                      ++..|+|.|++||||||+|+.||++++ ...+..|.+
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~   38 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY   38 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence            457889999999999999999999996 444444444

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.62  E-value=2.2e-07  Score=75.02  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEE-E
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV-C  169 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV-a  169 (212)
                      |+|+|.|||||||+++.|++.+   |  +.++|.|.+...+.+...   +..+...+.++... ...+.+..++..|| +
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~---~~~~~~~~~~~~~~-~~a~~l~~~G~~VIid   77 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLG---FSREDREENIRRIA-EVAKLLADAGLIVIAA   77 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccC---CCcchHHHHHHHHH-HHHHHHHhCCCEEEEc
Confidence            7899999999999999999998   5  456788988765433111   11111223333322 23334444444444 3


Q ss_pred             eCCceeechhhHHhcc------CCeEEEEEechhhhhc
Q 028227          170 AGNGAVQSSANLYEIS------GTFKTWNIIMDRRSSR  201 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~------~g~vV~Ld~~~~~v~R  201 (212)
                      +..   .....+..++      .-.+||++++.+...+
T Consensus        78 ~~~---~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~  112 (149)
T cd02027          78 FIS---PYREDREAARKIIGGGDFLEVFVDTPLEVCEQ  112 (149)
T ss_pred             cCC---CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHH
Confidence            322   2333333322      2467999998653333

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.61  E-value=2.1e-07  Score=79.14  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|.+||||||+|.+|+++|     ...++|.|.+.+.+.  .++.  |.+++...--..-.++.+.|...+-+
T Consensus        22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~--~dLg--Fs~edR~eniRRvaevAkll~daG~i   97 (197)
T COG0529          22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN--RDLG--FSREDRIENIRRVAEVAKLLADAGLI   97 (197)
T ss_pred             CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc--CCCC--CChHHHHHHHHHHHHHHHHHHHCCeE
Confidence            46899999999999999999999876     357789999988553  1221  33333222222335566666655545


Q ss_pred             EEEeCCceee---chhhHHhccC--CeEEEEEechh-hhhcc
Q 028227          167 VVCAGNGAVQ---SSANLYEISG--TFKTWNIIMDR-RSSRH  202 (212)
Q Consensus       167 VVa~GgG~V~---~~~~~~~L~~--g~vV~Ld~~~~-~v~R~  202 (212)
                      ||+. -=.+.   +...++.+..  -+-||+++|.+ ..+|+
T Consensus        98 viva-~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          98 VIVA-FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             EEEE-eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence            5532 10111   2233445543  46799999865 44443

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.59  E-value=6e-08  Score=80.66  Aligned_cols=39  Identities=23%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~  130 (212)
                      ...+|+++|-||+||||+|..||+.+|++|++..+++++
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkE   44 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKE   44 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhh
Confidence            357899999999999999999999999999999999886

>PLN02422 dephospho-CoA kinase

Probab=98.59  E-value=2.8e-07  Score=80.62  Aligned_cols=53  Identities=15%  Similarity=0.092  Sum_probs=40.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CC-chhhhhhhhchHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE-SAAKAFRESDEKG  148 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~-si~ei~~~~Ge~~  148 (212)
                      .|.|+|.+||||||+++.|+ .+|++++|+|.+.++.+. +. -..++.+.+|++.
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~i   57 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDI   57 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHh
Confidence            68999999999999999999 589999999999887753 11 1234555555443

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.59  E-value=6e-08  Score=81.35  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=35.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ++|+|+|+||+||||+|+.||+.++++++|+|++++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~   39 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI   39 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence            378999999999999999999999999999999988654

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.58  E-value=5.1e-07  Score=74.34  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=61.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|++||||||+++.|+..+     +..++|.|.+...+.++  .. +-.+.....++.. ..+...+...+..
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~--~~-~~~~~~~~~~~~~-~~~~~~~~~~G~~   92 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD--LG-FSEEDRKENIRRI-GEVAKLFVRNGII   92 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccc--cC-CCHHHHHHHHHHH-HHHHHHHHcCCCE
Confidence            47899999999999999999999887     35788999887655431  11 1112223344332 2234445555666


Q ss_pred             EEEeCCceeechhhHHhcc----C--CeEEEEEechhh
Q 028227          167 VVCAGNGAVQSSANLYEIS----G--TFKTWNIIMDRR  198 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~L~----~--g~vV~Ld~~~~~  198 (212)
                      ||...  .......++.++    .  .++|||+++.+.
T Consensus        93 VI~d~--~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~  128 (184)
T TIGR00455        93 VITSF--ISPYRADRQMVRELIEKGEFIEVFVDCPLEV  128 (184)
T ss_pred             EEEec--CCCCHHHHHHHHHhCcCCCeEEEEEeCCHHH
Confidence            66432  122233344442    2  367999997643

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.57  E-value=5.5e-07  Score=76.33  Aligned_cols=51  Identities=14%  Similarity=0.159  Sum_probs=39.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhch
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDE  146 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge  146 (212)
                      .|.|+|.+||||||+++.|++ +|++++|+|.+..+.+.  .....++.+..|+
T Consensus         3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~   55 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGD   55 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCc
Confidence            689999999999999999997 89999999998776643  1223344444443

>TIGR00763 lon ATP-dependent protease La

Probab=98.56  E-value=4.7e-08  Score=97.79  Aligned_cols=78  Identities=28%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             cccCCCceeecccccCCCccccceecc--CCcc-------------hHHHHHHHHH------hcccCCcEEEEEccCCCC
Q 028227           47 IISRKPRITTRSIADDTTSNTVTKVAA--EDPS-------------FAVKKKAADI------STELKGTSVFLVGMNNAI  105 (212)
Q Consensus        47 ~~~~~~~~~t~~~~~~~~~~~~~~~~~--~d~~-------------~~lk~~~~~~------~~~l~~~~I~LvG~~GsG  105 (212)
                      ..+|++|.++|+|.||.+..||.+...  .|..             ..+|+++.++      .+..++..++|+||||||
T Consensus       280 ~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~G  359 (775)
T TIGR00763       280 EPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVG  359 (775)
T ss_pred             CCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCC
Confidence            567899999999999999999988763  2221             2455555552      334466789999999999


Q ss_pred             HHHHHHHHHHHhCCcEeeh
Q 028227          106 KTHLGKFLADALRYYYFDS  124 (212)
Q Consensus       106 KTTvak~LA~~lg~~~~d~  124 (212)
                      ||++|+.||+.++.+|+..
T Consensus       360 KT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       360 KTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             HHHHHHHHHHHhcCCeEEE
Confidence            9999999999999888744

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK08356 hypothetical protein; Provisional

Probab=98.50  E-value=7.6e-07  Score=74.41  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      ..|+|+|+|||||||+++.|++ +|++++...+.+
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~   39 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPL   39 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcc
Confidence            5789999999999999999964 899999888643

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.49  E-value=2.4e-07  Score=78.18  Aligned_cols=39  Identities=26%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|.|+|++||||||+++.|++.+|++++|+|.+.++.+
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~   40 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL   40 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence            368999999999999999999988999999999988765

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.45  E-value=2.6e-07  Score=87.31  Aligned_cols=60  Identities=13%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH-HH--HHhCCCchhhhhhhhchHHHH
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VF--EAAGGESAAKAFRESDEKGYQ  150 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l-~~--~~~G~~si~ei~~~~Ge~~fr  150 (212)
                      +..+.+|+|+||||||||++|+.||+.++.+|++.|.. +.  ...| .+..++++...+..|+
T Consensus        44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~  106 (441)
T TIGR00390        44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK  106 (441)
T ss_pred             ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence            44568999999999999999999999999999999954 33  2344 5666777766666654

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.44  E-value=1.4e-06  Score=73.82  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=32.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      |.|+|++||||||+++.|++ +|++++|+|.+.++.+
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~   37 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYT   37 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHH
Confidence            68999999999999999976 7999999999988775

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.42  E-value=3.3e-06  Score=71.76  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=34.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|.|+|.+||||||+++.|++ +|++++|+|.+.++..
T Consensus         6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~   43 (208)
T PRK14731          6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQ   43 (208)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHc
Confidence            5688999999999999999997 8999999998877664

>PLN02842 nucleotide kinase

Probab=98.41  E-value=8.2e-07  Score=85.44  Aligned_cols=35  Identities=9%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             EEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        97 ~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|+|+|||||||+++.||+.+++.++++++++...
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~e   35 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAE   35 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHH
Confidence            37899999999999999999999999999988654

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.40  E-value=1.3e-06  Score=73.85  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +.|.|+|.||+||||+++.|+ .+|+.++++.+++.+.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~   37 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN   37 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence            368999999999999999999 9999999999988864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.39  E-value=1.1e-06  Score=73.15  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE  130 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~~  130 (212)
                      |.|+|++||||||+++.|+..+   ...+++.|+++..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~   39 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD   39 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence            7899999999999999999987   4788999987743

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.36  E-value=3.1e-06  Score=74.50  Aligned_cols=39  Identities=21%  Similarity=0.177  Sum_probs=36.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      .|.|+|..||||||+++.|++.+|++++|+|.+.++.+.
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~   41 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA   41 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence            689999999999999999999899999999999887753

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.36  E-value=3.8e-06  Score=71.47  Aligned_cols=40  Identities=20%  Similarity=0.149  Sum_probs=32.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe-ehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~-d~D~l~~~~  131 (212)
                      .+..|++.|+||+||||+++.||+.+|+.++ .+|.+.+.+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~   42 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFL   42 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHH
Confidence            4678999999999999999999999999765 555554443

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.36  E-value=9.2e-07  Score=85.26  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=37.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ++..|.|.|++||||||+++.||+.+|+.++|.|.++...
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            5678999999999999999999999999999999998764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.34  E-value=4.9e-07  Score=68.42  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      |+|.|++||||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998

...

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.34  E-value=2.1e-06  Score=84.11  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=63.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+++|+|||||||+|+.|++.+     ++.++|.|.+.....++..   +-.+..+.+++.. .++...+...+..
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l-~~~a~~~~~~G~~  534 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRV-AEVARLMADAGLI  534 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence            57899999999999999999999997     4688999998875433111   1112234455544 2233333344444


Q ss_pred             EEEeCCceeechhhHHhcc-----CC-eEEEEEechhhhhc
Q 028227          167 VVCAGNGAVQSSANLYEIS-----GT-FKTWNIIMDRRSSR  201 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~L~-----~g-~vV~Ld~~~~~v~R  201 (212)
                      ||+. . .......++.++     .. ++|||+++.+.+.+
T Consensus       535 Vivd-a-~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~  573 (632)
T PRK05506        535 VLVS-F-ISPFREERELARALHGEGEFVEVFVDTPLEVCEA  573 (632)
T ss_pred             EEEE-C-CCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHh
Confidence            4432 2 122334444443     23 78999997654433

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.31  E-value=1.6e-06  Score=81.42  Aligned_cols=116  Identities=13%  Similarity=0.072  Sum_probs=74.1

Q ss_pred             eccCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhc-----
Q 028227           71 VAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESD-----  145 (212)
Q Consensus        71 ~~~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~G-----  145 (212)
                      -.=+++++++++-++.  +.+  .+.+|+||||+||||+|+.||...++.|.-......   |..++.+++++..     
T Consensus        30 ~HLlg~~~~lrr~v~~--~~l--~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~---gvkdlr~i~e~a~~~~~~  102 (436)
T COG2256          30 EHLLGEGKPLRRAVEA--GHL--HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS---GVKDLREIIEEARKNRLL  102 (436)
T ss_pred             HhhhCCCchHHHHHhc--CCC--ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc---cHHHHHHHHHHHHHHHhc
Confidence            3456778888877776  665  789999999999999999999999999997776643   2123333333321     


Q ss_pred             ----------hHHHHHHHHHHHHHHhcCCCEEEEeCCce--eechhhHHhccCCeEEEEEe
Q 028227          146 ----------EKGYQQAETEVLKQLSSMGRLVVCAGNGA--VQSSANLYEISGTFKTWNII  194 (212)
Q Consensus       146 ----------e~~fr~~E~~vL~~L~~~~~~VVa~GgG~--V~~~~~~~~L~~g~vV~Ld~  194 (212)
                                -..|....+..+--..+ ++.|+-.|..+  +...-|-.++..+.|+.|+-
T Consensus       103 gr~tiLflDEIHRfnK~QQD~lLp~vE-~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~  162 (436)
T COG2256         103 GRRTILFLDEIHRFNKAQQDALLPHVE-NGTIILIGATTENPSFELNPALLSRARVFELKP  162 (436)
T ss_pred             CCceEEEEehhhhcChhhhhhhhhhhc-CCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence                      13444555555555554 34455444321  22233445666777888875

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.31  E-value=2.5e-06  Score=71.60  Aligned_cols=38  Identities=18%  Similarity=0.113  Sum_probs=33.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~  129 (212)
                      ++..|.|+|++||||||+++.|++.+   .+.+++.|.++.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            46789999999999999999999998   356789998765

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=3.1e-06  Score=74.04  Aligned_cols=113  Identities=16%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC---CcEeehhH-HHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR---YYYFDSDS-LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA  170 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~-l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~  170 (212)
                      .|+|+|+|||||||+|+.||+.|.   +..++... +..-..+..+.+ +.++.-++.|.+.-..++..-. ++-+||+-
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslp-i~ke~yres~~ks~~rlldSal-kn~~VIvD   80 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLP-ILKEVYRESFLKSVERLLDSAL-KNYLVIVD   80 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccc-hHHHHHHHHHHHHHHHHHHHHh-cceEEEEe
Confidence            589999999999999999998873   44444332 111111101211 1222222233222222222222 35577753


Q ss_pred             CCceeechhhHHhcc-------CCeEEEEEechhhhhcccCCCCCCCC
Q 028227          171 GNGAVQSSANLYEIS-------GTFKTWNIIMDRRSSRHGSKNGPQRI  211 (212)
Q Consensus       171 GgG~V~~~~~~~~L~-------~g~vV~Ld~~~~~v~R~~~~~~~~~~  211 (212)
                       .-..++.--+++..       ...+||+.++.+...|.. .++++||
T Consensus        81 -dtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN-~ergepi  126 (261)
T COG4088          81 -DTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN-RERGEPI  126 (261)
T ss_pred             -cccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh-ccCCCCC
Confidence             22223332233221       357999999998877777 6667776

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.30  E-value=2.3e-06  Score=84.35  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=36.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ...|.|.||+||||||+|+.||+++|++|+|+|.+++..
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            347899999999999999999999999999999998866

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.29  E-value=1.1e-06  Score=75.25  Aligned_cols=38  Identities=26%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|.|+|++||||||+++.+++ +|++.+|+|++.++.+
T Consensus         3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~   40 (201)
T COG0237           3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV   40 (201)
T ss_pred             eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence            5789999999999999999999 9999999999988553

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.28  E-value=4.3e-06  Score=67.86  Aligned_cols=30  Identities=30%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDS  124 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~  124 (212)
                      .|+|.|++||||||+++.|++.+   |+.++..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~   34 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT   34 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            58999999999999999999988   6655543

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.26  E-value=9.3e-07  Score=67.16  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=26.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      |+|+|+||||||++++.+|+.++.+++..|
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~   30 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEID   30 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence            689999999999999999999998875443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.25  E-value=2.8e-06  Score=82.20  Aligned_cols=86  Identities=19%  Similarity=0.056  Sum_probs=57.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      .+..|+++|.|||||||+++.+++..|+.+++.|.+-.                   +......+.+.|.....+||...
T Consensus       368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~-------------------~~~~~~~a~~~L~~G~sVVIDaT  428 (526)
T TIGR01663       368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS-------------------TQNCLTACERALDQGKRCAIDNT  428 (526)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH-------------------HHHHHHHHHHHHhCCCcEEEECC
Confidence            46789999999999999999999999999999998621                   12222334555665666777654


Q ss_pred             CceeechhhHH-hc---c-CC---eEEEEEechhhh
Q 028227          172 NGAVQSSANLY-EI---S-GT---FKTWNIIMDRRS  199 (212)
Q Consensus       172 gG~V~~~~~~~-~L---~-~g---~vV~Ld~~~~~v  199 (212)
                      .   .+...|. ++   + .+   .+||++++.+..
T Consensus       429 n---~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~  461 (526)
T TIGR01663       429 N---PDAASRAKFLQCARAAGIPCRCFLFNAPLAQA  461 (526)
T ss_pred             C---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH
Confidence            3   2333333 22   2 33   578888876543

Note that the EC number for the kinase function is: 2.7.1.78

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.24  E-value=8.5e-06  Score=69.81  Aligned_cols=113  Identities=22%  Similarity=0.246  Sum_probs=62.6

Q ss_pred             HHHHHHHHhcc-cCCcEEEEEccCCCCHHHHHHHHHHHhCCc-----E-eehhHHHH-----HHhCCCchhhhhhhhchH
Q 028227           80 VKKKAADISTE-LKGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLVF-----EAAGGESAAKAFRESDEK  147 (212)
Q Consensus        80 lk~~~~~~~~~-l~~~~I~LvG~~GsGKTTvak~LA~~lg~~-----~-~d~D~l~~-----~~~G~~si~ei~~~~Ge~  147 (212)
                      |.++.+.+... -++..|.|.|++||||||+++.|+..+...     . +..|++..     ...|...........+.+
T Consensus        19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~   98 (229)
T PRK09270         19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVA   98 (229)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHH
Confidence            44444444322 346789999999999999999999877431     2 55555331     111210000011111122


Q ss_pred             HHHHHHHHHHHHHh--------------------------cCCCEEEEeCCceeechhhHHhcc--CCeEEEEEech
Q 028227          148 GYQQAETEVLKQLS--------------------------SMGRLVVCAGNGAVQSSANLYEIS--GTFKTWNIIMD  196 (212)
Q Consensus       148 ~fr~~E~~vL~~L~--------------------------~~~~~VVa~GgG~V~~~~~~~~L~--~g~vV~Ld~~~  196 (212)
                      .+.    +++..+.                          .....||..|.+.......|..+.  .+.+|||+++.
T Consensus        99 ~~~----~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~  171 (229)
T PRK09270         99 GLA----ALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPA  171 (229)
T ss_pred             HHH----HHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCH
Confidence            222    2222221                          123467778877776666676554  57999999975

>COG0645 Predicted kinase [General function prediction only]

Probab=98.23  E-value=7.2e-06  Score=68.90  Aligned_cols=40  Identities=25%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      +-+++.|.||+||||+++.|++.+|...+.+|.+.+.+.|
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g   41 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG   41 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC
Confidence            4578899999999999999999999999999999998877

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.20  E-value=1.2e-05  Score=68.66  Aligned_cols=102  Identities=11%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC--Cc----hhhhhhhhchHHHHHHHHHHHHH-Hhc--
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ES----AAKAFRESDEKGYQQAETEVLKQ-LSS--  162 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~--~s----i~ei~~~~Ge~~fr~~E~~vL~~-L~~--  162 (212)
                      +...||++|.|||||-|.+..+++.+||.++.+++++.+...-  ..    +.++++ .|.-.=.+.-..+|+. |.+  
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~   85 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSG   85 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcC
Confidence            3678999999999999999999999999999999998876541  11    112221 1211111222223322 222  


Q ss_pred             -CCCEEEEeCCceeechhhHHhcc------CCeEEEEEechh
Q 028227          163 -MGRLVVCAGNGAVQSSANLYEIS------GTFKTWNIIMDR  197 (212)
Q Consensus       163 -~~~~VVa~GgG~V~~~~~~~~L~------~g~vV~Ld~~~~  197 (212)
                       .+..+|   .|.+-+..++..+.      ..+++|++++.+
T Consensus        86 ~~~~fLI---DGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee  124 (195)
T KOG3079|consen   86 DSNGFLI---DGYPRNVDQLVEFERKIQGDPDFVLFFDCPEE  124 (195)
T ss_pred             CCCeEEe---cCCCCChHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence             222555   35555555555442      379999999864

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.19  E-value=3.3e-06  Score=80.05  Aligned_cols=70  Identities=19%  Similarity=0.274  Sum_probs=52.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH-HHH--HhCCCchhhhhhhhchHHH----------------HH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VFE--AAGGESAAKAFRESDEKGY----------------QQ  151 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l-~~~--~~G~~si~ei~~~~Ge~~f----------------r~  151 (212)
                      ..+.+|+|+||+|||||++|+.||+.++.+|+..|.. +++  +.| .+..+++++..+.+|                ..
T Consensus        48 ~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG-~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~  126 (443)
T PRK05201         48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESIIRDLVEIAVKMVREEKREKVREKAEEA  126 (443)
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999864 443  334 566566665555543                34


Q ss_pred             HHHHHHHHHh
Q 028227          152 AETEVLKQLS  161 (212)
Q Consensus       152 ~E~~vL~~L~  161 (212)
                      .|.+++..|.
T Consensus       127 ~e~ri~~~l~  136 (443)
T PRK05201        127 AEERILDALL  136 (443)
T ss_pred             HHHHHHHHhC
Confidence            5666777765

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.17  E-value=1.5e-05  Score=66.19  Aligned_cols=100  Identities=23%  Similarity=0.322  Sum_probs=55.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC--Cchhhhhhhhc--------------------------hH
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESD--------------------------EK  147 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~--~si~ei~~~~G--------------------------e~  147 (212)
                      |-|.+..|||++++|+.||+.||++|+|- +++.+.+..  .+. +.+...+                          .+
T Consensus         2 ITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    2 ITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISE-EEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-------------SS-HHH--HH---HHS--------------
T ss_pred             EEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCH-HHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            67889999999999999999999999999 555443321  111 1111111                          22


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCceeechhhHHhcc---CCeEEEEEech-hhhhcccC
Q 028227          148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEIS---GTFKTWNIIMD-RRSSRHGS  204 (212)
Q Consensus       148 ~fr~~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~---~g~vV~Ld~~~-~~v~R~~~  204 (212)
                      .+...+.+++.+++..+++||. |-|     .++ +|+   +.+-|||..+. .|++|...
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~-GR~-----a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~  133 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIV-GRC-----ANY-ILRDIPNVLHVFIYAPLEFRVERIME  133 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEE-STT-----HHH-HTTT-TTEEEEEEEE-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEE-ecC-----Hhh-hhCCCCCeEEEEEECCHHHHHHHHHH
Confidence            3334556788888877788874 322     223 454   45789999875 36665433

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.17  E-value=5.5e-06  Score=70.15  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFE  130 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~  130 (212)
                      |.|.|.+||||||+|+.|++.+ ++.+++.|+++..
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            7889999999999999999998 6999999998763

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.16  E-value=1.6e-05  Score=65.36  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +++.|+|.|++||||||+++.|++.++
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            477899999999999999999999985

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.14  E-value=2.7e-06  Score=71.49  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      .|.|+|..||||||+++.|++ +|++++|+|.+.++.+.
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~   39 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYE   39 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTS
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhh
Confidence            588999999999999999998 99999999999988764

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.06  E-value=6.1e-06  Score=71.87  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ..|.|=||.||||||+|+.||++||+.|+|+..++...
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            57889999999999999999999999999999987644

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.06  E-value=1.9e-05  Score=71.66  Aligned_cols=81  Identities=20%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHHH------------hC----CCchhhhhhhhchHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AG----GESAAKAFRESDEKGYQQAET  154 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~~------------~G----~~si~ei~~~~Ge~~fr~~E~  154 (212)
                      +..|+|+||+|||||+++..||+.++..+++.|..  +..+            .|    ..+..+.-+......|.+.-.
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~   83 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDAL   83 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHH
Confidence            56899999999999999999999999999999995  2221            11    001111112223445666556


Q ss_pred             HHHHHHhcCCCEEEEeCCc
Q 028227          155 EVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus       155 ~vL~~L~~~~~~VVa~GgG  173 (212)
                      +.++++...+...|-+||.
T Consensus        84 ~~i~~i~~~gk~pIlvGGt  102 (307)
T PRK00091         84 AAIADILARGKLPILVGGT  102 (307)
T ss_pred             HHHHHHHhCCCCEEEECcH
Confidence            6777776655554545653

>COG4639 Predicted kinase [General function prediction only]

Probab=98.06  E-value=2.9e-05  Score=64.84  Aligned_cols=100  Identities=15%  Similarity=0.074  Sum_probs=65.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      .-|+|+|.+||||||+++..  .+..+.+++|++.... |...-.+......+..+...+..+-+.|...+-.|+..-. 
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn-   78 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN-   78 (168)
T ss_pred             eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc-
Confidence            46899999999999999974  3578889999988765 2122233344445667777777777777766667774322 


Q ss_pred             eeechhhHHhc-c----C---CeEEEEEechhhh
Q 028227          174 AVQSSANLYEI-S----G---TFKTWNIIMDRRS  199 (212)
Q Consensus       174 ~V~~~~~~~~L-~----~---g~vV~Ld~~~~~v  199 (212)
                        .+..++..+ .    .   .+.||++.|.+..
T Consensus        79 --~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c  110 (168)
T COG4639          79 --LRREDRRKLIDLAKAYGYKIYAIVFDTPLELC  110 (168)
T ss_pred             --CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH
Confidence              334445433 2    2   3578888876433

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.04  E-value=2.5e-05  Score=68.03  Aligned_cols=37  Identities=19%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCc---EeehhHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVFE  130 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~---~~d~D~l~~~  130 (212)
                      ..|.|.|.+||||||+++.|++.++..   .+..|+++..
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~   48 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD   48 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence            577888999999999999999999955   7888988763

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.02  E-value=2e-05  Score=70.16  Aligned_cols=107  Identities=15%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEE
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa  169 (212)
                      .|+|+|.|||||||+++.|++.+     .+.+++-|.+..   . ..  .+.+...|+..|..-...++.....+.+||.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~---~-~~--~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~   76 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI---D-RN--DYADSKKEKEARGSLKSAVERALSKDTIVIL   76 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----T-TS--SS--GGGHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc---c-hh--hhhchhhhHHHHHHHHHHHHHhhccCeEEEE
Confidence            58999999999999999999864     344566555541   1 11  1223445666664433334434345667775


Q ss_pred             eCCceeechhhHHhcc-------CCeEEEEEechh-hhhcccCCCCC
Q 028227          170 AGNGAVQSSANLYEIS-------GTFKTWNIIMDR-RSSRHGSKNGP  208 (212)
Q Consensus       170 ~GgG~V~~~~~~~~L~-------~g~vV~Ld~~~~-~v~R~~~~~~~  208 (212)
                      -+ ...+...-+++.+       ...+||++++.+ ..+|...+..+
T Consensus        77 Dd-~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~  122 (270)
T PF08433_consen   77 DD-NNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP  122 (270)
T ss_dssp             -S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred             eC-CchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence            43 3344443333332       236899999754 44444444433

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.9e-05  Score=77.78  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             ccceeccCCcchHHHHHHHHH-----------h--cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHH
Q 028227           67 TVTKVAAEDPSFAVKKKAADI-----------S--TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEA  131 (212)
Q Consensus        67 ~~~~~~~~d~~~~lk~~~~~~-----------~--~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~  131 (212)
                      .|.-++.++   +||++.++-           .  +--.++-|+++||||||||++||+||..-++.|+..  -+++-.+
T Consensus       432 ~W~dIGGlE---~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~  508 (693)
T KOG0730|consen  432 SWDDIGGLE---ELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY  508 (693)
T ss_pred             ChhhccCHH---HHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence            344444444   777777752           1  112468899999999999999999999988888754  7777777


Q ss_pred             hCC--Cchhhhhhhh
Q 028227          132 AGG--ESAAKAFRES  144 (212)
Q Consensus       132 ~G~--~si~ei~~~~  144 (212)
                      .|.  ..+.++|+..
T Consensus       509 vGeSEr~ir~iF~kA  523 (693)
T KOG0730|consen  509 VGESERAIREVFRKA  523 (693)
T ss_pred             cCchHHHHHHHHHHH
Confidence            772  2244555443

>PHA00729 NTP-binding motif containing protein

Probab=97.98  E-value=1.6e-05  Score=69.46  Aligned_cols=39  Identities=18%  Similarity=0.090  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..|+.+.++... .-.+|+|+|+||+||||+|..||++++
T Consensus         4 ~~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729          4 LAKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             HHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445556665332 236899999999999999999999976

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2.3e-05  Score=77.12  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhCC--Cchhhhhhhh-------------------ch
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGG--ESAAKAFRES-------------------DE  146 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G~--~si~ei~~~~-------------------Ge  146 (212)
                      ...++-|+|-||||||||.+|+++|..+|+||+..  -+++-.+.|.  ..+.++|++.                   .+
T Consensus       220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe  299 (802)
T KOG0733|consen  220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE  299 (802)
T ss_pred             CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence            34568899999999999999999999999999853  3444333331  1123333322                   23


Q ss_pred             HHHHHHHHHHHHHHh
Q 028227          147 KGYQQAETEVLKQLS  161 (212)
Q Consensus       147 ~~fr~~E~~vL~~L~  161 (212)
                      .+-+++|.+++.+|.
T Consensus       300 ~aqreMErRiVaQLl  314 (802)
T KOG0733|consen  300 EAQREMERRIVAQLL  314 (802)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            456789999888886

>PRK12338 hypothetical protein; Provisional

Probab=97.97  E-value=6.1e-05  Score=68.90  Aligned_cols=42  Identities=17%  Similarity=0.146  Sum_probs=34.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe-ehhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~-d~D~l~~~~~G  133 (212)
                      ++..|+|.|+|||||||+|+.||+++|+.++ ++|.+.+.+.|
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            4678999999999999999999999999988 55555554443

>PTZ00301 uridine kinase; Provisional

Probab=97.95  E-value=4e-05  Score=65.88  Aligned_cols=38  Identities=16%  Similarity=0.036  Sum_probs=30.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~~  129 (212)
                      +...|.|.|+|||||||+|+.|++.+.       ...+..|.++.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            456789999999999999999988762       33667788764

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.94  E-value=3.8e-05  Score=64.36  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF  129 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~  129 (212)
                      -++..+++.|+|||||||++..+...+   ++.++|.|.+..
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~   54 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ   54 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence            357889999999999999999999986   789999999754

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.93  E-value=0.0002  Score=60.76  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHh---CCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC-EEE
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAA---GGESAAKAFRESDEKGYQQAETEVLKQLSSMGR-LVV  168 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~~~---G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~-~VV  168 (212)
                      +.++++|.||+||||+.+.+.+.+ .+.+++-.++.-+..   |.....+-+...-.+..++....+.+.+.++.. .+|
T Consensus         5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iiv   84 (189)
T COG2019           5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIV   84 (189)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEE
Confidence            789999999999999999999999 888888888865553   211111222222234444555555555554433 444


Q ss_pred             ------EeCCceeech--hhHHhccCCeEEEEEech
Q 028227          169 ------CAGNGAVQSS--ANLYEISGTFKTWNIIMD  196 (212)
Q Consensus       169 ------a~GgG~V~~~--~~~~~L~~g~vV~Ld~~~  196 (212)
                            -+..|-+...  +-.+.|.-+++|-|..+.
T Consensus        85 DtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp  120 (189)
T COG2019          85 DTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADP  120 (189)
T ss_pred             eccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCH
Confidence                  4444433322  234455578888888854

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.91  E-value=2.8e-05  Score=64.57  Aligned_cols=27  Identities=30%  Similarity=0.267  Sum_probs=24.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ++..|+|+|++||||||+++.|+..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            578999999999999999999999875

>PLN02840 tRNA dimethylallyltransferase

Probab=97.90  E-value=3.3e-05  Score=73.06  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH--HHH-hC--CCch-------------hhhhhhhchHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--FEA-AG--GESA-------------AKAFRESDEKGYQQAE  153 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~--~~~-~G--~~si-------------~ei~~~~Ge~~fr~~E  153 (212)
                      ++..|+|+|++||||||++..||+.++..+++.|.+.  ..+ .|  ..+.             -+.-+++....|.+.-
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A   99 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDA   99 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHH
Confidence            3567999999999999999999999999999999742  111 01  0111             1111223345666666


Q ss_pred             HHHHHHHhcCCCEEEEeCC
Q 028227          154 TEVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus       154 ~~vL~~L~~~~~~VVa~Gg  172 (212)
                      .++++++...+...|-+||
T Consensus       100 ~~~I~~i~~rgkiPIvVGG  118 (421)
T PLN02840        100 RRATQDILNRGRVPIVAGG  118 (421)
T ss_pred             HHHHHHHHhcCCCEEEEcC
Confidence            7778888777665555565

>PRK06696 uridine kinase; Validated

Probab=97.89  E-value=1.6e-05  Score=67.93  Aligned_cols=38  Identities=18%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEee--hhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFD--SDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d--~D~l~~  129 (212)
                      .+..|.|.|++||||||+|+.|++.+   |.+++.  +|+++.
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            35688999999999999999999999   666654  888753

>PRK13973 thymidylate kinase; Provisional

Probab=97.89  E-value=0.00012  Score=62.21  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS  124 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~  124 (212)
                      |+|.-|+|-|+.||||||+++.|++.|   |+.++.+
T Consensus         1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            357889999999999999999999999   8887754

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.88  E-value=1.2e-05  Score=70.63  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=25.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      .+++|+||||+||||+|+.+|+.++..|.-
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~   80 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKI   80 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence            589999999999999999999999988753

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.87  E-value=4.6e-05  Score=68.67  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=51.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH--HHH-hC--CCc-------------hhhhhhhhchHHHHHHHHHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--FEA-AG--GES-------------AAKAFRESDEKGYQQAETEVL  157 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~--~~~-~G--~~s-------------i~ei~~~~Ge~~fr~~E~~vL  157 (212)
                      |+|+|++|||||+++..||+.++..++..|.+-  ..+ .|  ..+             .-+.-+......|...-.+++
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i   81 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAI   81 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHH
Confidence            789999999999999999999999999999852  211 01  011             111122233455666666777


Q ss_pred             HHHhcCCCEEEEeCC
Q 028227          158 KQLSSMGRLVVCAGN  172 (212)
Q Consensus       158 ~~L~~~~~~VVa~Gg  172 (212)
                      +++...+...|-+||
T Consensus        82 ~~~~~~g~~pi~vGG   96 (287)
T TIGR00174        82 ADITARGKIPLLVGG   96 (287)
T ss_pred             HHHHhCCCCEEEEcC
Confidence            887776665565665

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.87  E-value=1.7e-05  Score=62.03  Aligned_cols=28  Identities=36%  Similarity=0.294  Sum_probs=26.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      .|+|+|+||||||++++.+|+.++.+++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            4899999999999999999999998874

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.86  E-value=1.1e-05  Score=80.14  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .|.|.|+|||||||+++.||+.+|+.|+|++.++...
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            6899999999999999999999999999999987654

>PLN02748 tRNA dimethylallyltransferase

Probab=97.86  E-value=4.7e-05  Score=72.88  Aligned_cols=82  Identities=18%  Similarity=0.192  Sum_probs=56.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHHH---hCCCchh-------------hhhhhhchHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA---AGGESAA-------------KAFRESDEKGYQQAE  153 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~~---~G~~si~-------------ei~~~~Ge~~fr~~E  153 (212)
                      ++..|+|+|+.|||||+++..||+.++..++++|..  +..+   +...+..             +.-+++....|++.-
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A  100 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA  100 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence            456899999999999999999999999999999974  3211   1111111             111233456777777


Q ss_pred             HHHHHHHhcCCCEEEEeCCc
Q 028227          154 TEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus       154 ~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ..+++.+...+...|-+||.
T Consensus       101 ~~~I~~I~~rgk~PIlVGGT  120 (468)
T PLN02748        101 VPLIEEILSRNGLPVIVGGT  120 (468)
T ss_pred             HHHHHHHHhcCCCeEEEcCh
Confidence            77888887777666666663

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=97.86  E-value=2.2e-05  Score=71.35  Aligned_cols=41  Identities=27%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe---ehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF---DSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~---d~D~l~~~~~G  133 (212)
                      -+.|.+-|+.|+|||++||.||++||+.++   ++|.++-...|
T Consensus        71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg  114 (393)
T KOG3877|consen   71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG  114 (393)
T ss_pred             ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence            356778899999999999999999997664   78887665554

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.86  E-value=0.00026  Score=58.30  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|+|.|++||||||+++.|++.+
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999986

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.86  E-value=1.8e-05  Score=58.43  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|+|++||||||+++.||..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            5789999999999999999999988764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.85  E-value=8.3e-05  Score=61.31  Aligned_cols=29  Identities=31%  Similarity=0.302  Sum_probs=25.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      |+|.|++||||||+++.|++.+++.++.-
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~E   30 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEVVPE   30 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCccccc
Confidence            78999999999999999999988766533

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.84  E-value=4.9e-05  Score=56.95  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=27.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~  124 (212)
                      .+..++|+|++|+|||++++.+++.+   +..++..
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            46789999999999999999999987   5555433

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=97.80  E-value=2.9e-05  Score=79.12  Aligned_cols=42  Identities=17%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      |++..|.|-|++||||||+++.||++||+.|+|++.++...+
T Consensus        32 m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         32 MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            345689999999999999999999999999999999987664

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.79  E-value=5.1e-05  Score=61.28  Aligned_cols=43  Identities=33%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~-~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      .+.++.++.+...++ +..|+|.|+.|+||||++|.+++.+|+.
T Consensus         6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150         6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            356667777777764 6789999999999999999999999974

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK05439 pantothenate kinase; Provisional

Probab=97.78  E-value=7e-05  Score=68.25  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=30.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~~  129 (212)
                      +..|.|.|++||||||+++.|++.++       ...+..|+++.
T Consensus        86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            45788999999999999999998764       35678888763

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.77  E-value=2.9e-05  Score=55.02  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=20.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      |+|+|++||||||+++.|++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.77  E-value=0.0002  Score=60.17  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcE--eehhHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFE  130 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~--~d~D~l~~~  130 (212)
                      ++.|+|-|++.|||||+++.|.+.+.-+|  +..|.++..
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~   40 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM   40 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence            46899999999999999999999998665  566888874

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.76  E-value=4.2e-05  Score=67.14  Aligned_cols=42  Identities=24%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      .+.+++....  ..+..|+|.|+||||||++|+.||+.+|.+++
T Consensus         9 ~l~~~~l~~l--~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640         9 RVTSRALRYL--KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             HHHHHHHHHH--hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            3444444422  24789999999999999999999999999887

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.71  E-value=6.4e-05  Score=65.58  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=22.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+++|+|+|||||||+|+.+|+.+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.70  E-value=0.0001  Score=69.27  Aligned_cols=41  Identities=15%  Similarity=0.045  Sum_probs=34.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G  133 (212)
                      +..+.|.||||||||.+++++|.++|+.|+  +..++..+..|
T Consensus       148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG  190 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG  190 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence            677889999999999999999999999876  55566666666

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.69  E-value=6.3e-05  Score=72.28  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||.+|+.+|..++++++..|
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            4688999999999999999999999999988765

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.67  E-value=0.00062  Score=58.83  Aligned_cols=36  Identities=19%  Similarity=0.178  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l  127 (212)
                      .+.+++|+|++|||||++++.++..+.     +.|+..|..
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~   84 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR   84 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence            346899999999999999999998765     578888764

>PRK09087 hypothetical protein; Validated

Probab=97.67  E-value=9.2e-05  Score=64.00  Aligned_cols=103  Identities=14%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhh--hhhhchHHH-HHHHHHHHHHHhcCCCEEEE
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKA--FRESDEKGY-QQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei--~~~~Ge~~f-r~~E~~vL~~L~~~~~~VVa  169 (212)
                      ...++|+|++|||||++++.+++..+..|++.+.+..+...... ..+  +++.+.-.. .+.-.+++..+.+.+..+|-
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ili  122 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAA-EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLM  122 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhh-cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence            34699999999999999999999999999999765443321000 000  111100000 11112344445544444554


Q ss_pred             eCCce-----eechhhHHhccCCeEEEEEech
Q 028227          170 AGNGA-----VQSSANLYEISGTFKTWNIIMD  196 (212)
Q Consensus       170 ~GgG~-----V~~~~~~~~L~~g~vV~Ld~~~  196 (212)
                      ++...     ...+.-+..+..+.++-|+.+.
T Consensus       123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd  154 (226)
T PRK09087        123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD  154 (226)
T ss_pred             ECCCChHHhccccccHHHHHhCCceeecCCCC
Confidence            44311     1123344455678899888753

>PRK06620 hypothetical protein; Validated

Probab=97.66  E-value=0.00017  Score=61.79  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHH-HHHHHHHHHhcCCCEEEEeCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQ-AETEVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~-~E~~vL~~L~~~~~~VVa~Gg  172 (212)
                      ..++|+|++|||||++++++++..+..++.......+..+..++ =++++  -+.+.+ .-..++..+.+.+..+|-++.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~-lliDd--i~~~~~~~lf~l~N~~~e~g~~ilits~  121 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNA-FIIED--IENWQEPALLHIFNIINEKQKYLLLTSS  121 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCE-EEEec--cccchHHHHHHHHHHHHhcCCEEEEEcC
Confidence            67999999999999999999998887766544333322210111 01111  122221 112344444455555554443


Q ss_pred             ceeec---hhhHHhccCCeEEEEEech
Q 028227          173 GAVQS---SANLYEISGTFKTWNIIMD  196 (212)
Q Consensus       173 G~V~~---~~~~~~L~~g~vV~Ld~~~  196 (212)
                      .....   +.-+..+..|.++-|+.+.
T Consensus       122 ~~p~~l~l~~L~SRl~~gl~~~l~~pd  148 (214)
T PRK06620        122 DKSRNFTLPDLSSRIKSVLSILLNSPD  148 (214)
T ss_pred             CCccccchHHHHHHHhCCceEeeCCCC
Confidence            22111   3333444578899998753

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.66  E-value=0.00015  Score=69.03  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.++|+||||||||++++.||..++++|+..+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~  120 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS  120 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence            568999999999999999999999999887654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.66  E-value=8.6e-05  Score=66.20  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=31.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC---------CcEeehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR---------YYYFDSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg---------~~~~d~D~l~~~~~G  133 (212)
                      +..|+|+|+||||||++|+.+|+.+.         +.+++.++++....|
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g  107 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG  107 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence            34799999999999999999988762         445666777665544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.65  E-value=0.00013  Score=66.31  Aligned_cols=45  Identities=16%  Similarity=0.102  Sum_probs=36.7

Q ss_pred             HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc-EeehhHHHHHH
Q 028227           87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEA  131 (212)
Q Consensus        87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~-~~d~D~l~~~~  131 (212)
                      +...-++..|+|.|++||||||+|+.||+++|+. ++..|.+.+.+
T Consensus        86 i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~  131 (301)
T PRK04220         86 IRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM  131 (301)
T ss_pred             HhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence            3333346789999999999999999999999997 68888887433

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.64  E-value=0.0004  Score=66.65  Aligned_cols=42  Identities=19%  Similarity=0.144  Sum_probs=36.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCc-EeehhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~-~~d~D~l~~~~~G  133 (212)
                      ++..|+++|++|+||||++..||..+|+. ++.+|.+.+.+.+
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~  296 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRA  296 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHh
Confidence            46889999999999999999999999997 6799998765543

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.63  E-value=0.00013  Score=58.15  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      |+|+|++||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999998754

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.62  E-value=0.00019  Score=61.43  Aligned_cols=28  Identities=29%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +|..++|.||+|+|||||.+.|-+..++
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l   30 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKL   30 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence            5789999999999999999999776543

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.62  E-value=5.7e-05  Score=71.10  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      ...+|+|+|++|||||++|+.||+.++++|+..|.
T Consensus       107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~  141 (412)
T PRK05342        107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA  141 (412)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence            45789999999999999999999999999987665

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.62  E-value=0.00019  Score=60.34  Aligned_cols=26  Identities=8%  Similarity=0.041  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|+|+||+|||||||.+.|.+..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            46789999999999999999998775

>PLN02348 phosphoribulokinase

Probab=97.62  E-value=0.00014  Score=68.25  Aligned_cols=36  Identities=11%  Similarity=-0.042  Sum_probs=31.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC--------------------cEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY--------------------YYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~--------------------~~~d~D~l~  128 (212)
                      +..|.|.|++||||||+++.|++.++.                    ..+.+|+++
T Consensus        49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence            467889999999999999999999863                    368889885

>PHA02244 ATPase-like protein

Probab=97.60  E-value=0.00011  Score=68.67  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      ++.++..+..  .+..|+|+|++|||||++++.+|..++++|+..+.+
T Consensus       108 ~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        108 ETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             HHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            4444444333  267899999999999999999999999999876654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.60  E-value=0.00011  Score=71.06  Aligned_cols=45  Identities=22%  Similarity=0.201  Sum_probs=34.4

Q ss_pred             HHHHHHHHH-hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           79 AVKKKAADI-STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        79 ~lk~~~~~~-~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      +|+.+.++. .+....+.++|+||+||||||..+.||+.+|+.+.+
T Consensus        30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            455555542 333335678899999999999999999999987775

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.59  E-value=6.3e-05  Score=69.04  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ...+..|+|.|+|||||||+++.||+.+|++++
T Consensus        61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            344689999999999999999999999999997

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR00235 udk uridine kinase

Probab=97.59  E-value=5.8e-05  Score=63.51  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC---CcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~l~~  129 (212)
                      ++..|.|+|++||||||+++.|+..++   +.++..|.++.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~   45 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK   45 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence            467899999999999999999998875   56788887653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.58  E-value=0.0002  Score=60.02  Aligned_cols=38  Identities=21%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~  129 (212)
                      .+..|+|+|++|||||++++.++...     .+.|++.+.+..
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~   79 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ   79 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence            46799999999999999999999765     356788777643

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.57  E-value=0.00084  Score=56.87  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFE  130 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~  130 (212)
                      ....++|+|++|+|||++++.++..+     .+.|++.+.....
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~   84 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA   84 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence            45789999999999999999999887     7788888776543

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.56  E-value=0.00062  Score=59.19  Aligned_cols=37  Identities=24%  Similarity=0.180  Sum_probs=33.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .|-|+|..||||||+.+.+- ++|++.+|+|.+..+..
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv   39 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV   39 (225)
T ss_pred             EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence            47799999999999999995 89999999999987765

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.55  E-value=0.00023  Score=60.24  Aligned_cols=28  Identities=14%  Similarity=0.044  Sum_probs=23.8

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ...++..|+|+|++|||||||++.|++.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3346788999999999999999999754

>PRK04195 replication factor C large subunit; Provisional

Probab=97.55  E-value=0.00015  Score=68.94  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .|+..++....--.+..++|+|+||+||||+++.||+.+++.+++.+
T Consensus        25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ieln   71 (482)
T PRK04195         25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELN   71 (482)
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence            45555554321112678999999999999999999999999888653

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00039  Score=58.53  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=60.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhc-hHHHHHHHHHHHHHHhcCCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGR  165 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~G-e~~fr~~E~~vL~~L~~~~~  165 (212)
                      +|-.|+++|.+||||||+|-+|.+.|.     .+.+|.|.+..-..  .++.  |..++ .+..|+ -.++.+-++  ..
T Consensus        30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN--~DL~--F~a~dR~ENIRR-igeVaKLFA--Da  102 (207)
T KOG0635|consen   30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN--KDLG--FKAEDRNENIRR-IGEVAKLFA--DA  102 (207)
T ss_pred             CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc--cccC--cchhhhhhhHHH-HHHHHHHHh--cc
Confidence            478999999999999999999998872     35579999876432  2221  33222 223332 234444343  33


Q ss_pred             EEEEeCCce----eechhhHHhccC-C-eEEEEEechhh
Q 028227          166 LVVCAGNGA----VQSSANLYEISG-T-FKTWNIIMDRR  198 (212)
Q Consensus       166 ~VVa~GgG~----V~~~~~~~~L~~-g-~vV~Ld~~~~~  198 (212)
                      +||+.-.-+    ..+...++++.. + +-||.++|.+.
T Consensus       103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~v  141 (207)
T KOG0635|consen  103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEV  141 (207)
T ss_pred             ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHH
Confidence            455432211    223455667763 3 56899987543

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.53  E-value=0.00096  Score=56.93  Aligned_cols=28  Identities=32%  Similarity=0.331  Sum_probs=25.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      |+|-|+.||||||+++.|++.+++.++.
T Consensus         2 I~iEG~~GsGKSTl~~~L~~~l~~~~~~   29 (219)
T cd02030           2 ITVDGNIASGKGKLAKELAEKLGMKYFP   29 (219)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            7889999999999999999999876553

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.53  E-value=0.00073  Score=61.01  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=28.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~  128 (212)
                      +..|.|.|++||||||+++.|+..+.       +..+..|.+.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            56788999999999999999987663       4456777765

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.53  E-value=0.00041  Score=62.50  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=26.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ...|+|+|++||||||+++.|+ .+|+.++|.
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~   36 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDN   36 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH-HcCCeEECC
Confidence            4579999999999999999996 468877754

>PRK06893 DNA replication initiation factor; Validated

Probab=97.52  E-value=0.0015  Score=56.22  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=28.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      ...++|+|++|||||++++++|..+     ...|++.+.
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~   77 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK   77 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence            3568999999999999999999875     678888863

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.51  E-value=9.4e-05  Score=68.70  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .++.|+|+|+||||||++|+.+|..++.+|+..
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v  196 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  196 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence            367899999999999999999999999887644

>smart00072 GuKc Guanylate kinase homologues

Probab=97.51  E-value=0.00034  Score=57.89  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++.|+|+||+||||+|+++.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999998875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.50  E-value=0.0001  Score=61.27  Aligned_cols=34  Identities=24%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF  129 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~  129 (212)
                      |.|.|.+||||||+++.|++.+     +...++.|+++.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            7899999999999999999986     467899999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>CHL00181 cbbX CbbX; Provisional

Probab=97.50  E-value=0.00013  Score=65.27  Aligned_cols=41  Identities=27%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC---------CcEeehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR---------YYYFDSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg---------~~~~d~D~l~~~~~G  133 (212)
                      +..|+|+|+||+|||++|+.+|+.+.         +..++.++++.+..|
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g  108 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG  108 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence            45699999999999999999998752         345667777665555

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.50  E-value=7.9e-05  Score=60.04  Aligned_cols=27  Identities=26%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      +|+|+|.+|+||||+++.|++. |++++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            5899999999999999999998 99988

>PF13173 AAA_14: AAA domain

Probab=97.50  E-value=0.00013  Score=56.84  Aligned_cols=38  Identities=29%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC----CcEeehhHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVFE  130 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg----~~~~d~D~l~~~  130 (212)
                      ++.++|.|++||||||+.+.+++.+.    +.|++.|+....
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~   43 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR   43 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence            46789999999999999999998865    888988877654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.49  E-value=9.9e-05  Score=61.52  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=27.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC---C------cEeehhHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR---Y------YYFDSDSLV  128 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg---~------~~~d~D~l~  128 (212)
                      .|.|.|++||||||+|+.|++.|+   .      .++..|.+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            378999999999999999999997   2      356667654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00038  Score=65.02  Aligned_cols=42  Identities=26%  Similarity=0.260  Sum_probs=37.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G  133 (212)
                      .++-|+|+||||+|||-+||++|...+..|+.  .-+++.++.|
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiG  227 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIG  227 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhc
Confidence            47889999999999999999999999999975  5778888877

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.47  E-value=0.00012  Score=69.01  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +.+|+|+||+|||||++|+.||+.++++|.-.|
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d  148 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIAD  148 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence            468999999999999999999999999887554

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.47  E-value=0.00053  Score=62.26  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH--HH---hCCCchh-------------hhhhhhchHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF--EA---AGGESAA-------------KAFRESDEKGYQQAET  154 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~--~~---~G~~si~-------------ei~~~~Ge~~fr~~E~  154 (212)
                      ++.|+|+||.|||||.+|-.||++ +...+++|..--  .+   +...+..             +.-+......|.+.-.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~   82 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEAL   82 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHH
Confidence            457999999999999999999999 559999998732  11   0111111             1122334466777777


Q ss_pred             HHHHHHhcCCCEEEEeCC
Q 028227          155 EVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus       155 ~vL~~L~~~~~~VVa~Gg  172 (212)
                      ++++++...+...|-+||
T Consensus        83 ~~i~~i~~~gk~PilvGG  100 (300)
T PRK14729         83 KIIKELRQQKKIPIFVGG  100 (300)
T ss_pred             HHHHHHHHCCCCEEEEeC
Confidence            788888766665555665

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00031  Score=69.47  Aligned_cols=42  Identities=24%  Similarity=0.269  Sum_probs=36.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G  133 (212)
                      .+.-|+|+||||||||-+||++|..-|..|+.  .-+++.++.|
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG  587 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG  587 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence            46789999999999999999999998888875  4677777777

>PRK07667 uridine kinase; Provisional

Probab=97.44  E-value=0.00021  Score=59.83  Aligned_cols=39  Identities=18%  Similarity=0.258  Sum_probs=32.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~  131 (212)
                      ...|.|.|++||||||+++.|++.++     ...++.|+++...
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~   60 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER   60 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence            45788999999999999999999873     4589999976543

>CHL00176 ftsH cell division protein; Validated

Probab=97.43  E-value=0.00053  Score=67.97  Aligned_cols=33  Identities=30%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.|+|+||||||||++++.+|...+++|+..+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is  248 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS  248 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence            567999999999999999999999999988653

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.43  E-value=0.00015  Score=66.19  Aligned_cols=33  Identities=24%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.|+|+|+||||||++++.+|..++..|+...
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~  188 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV  188 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence            577999999999999999999999998887543

Many proteins may score above the trusted cutoff because an internal

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.42  E-value=0.00011  Score=59.69  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=23.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ++.|+|+|++||||||+++.|++.++.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence            468999999999999999999986643

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00017  Score=66.65  Aligned_cols=38  Identities=29%  Similarity=0.363  Sum_probs=34.2

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      +|.+.+|+|+||.|||||-+|+-||+.|++||--+|.-
T Consensus        94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT  131 (408)
T COG1219          94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT  131 (408)
T ss_pred             eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence            36788999999999999999999999999999866653

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00057  Score=68.94  Aligned_cols=42  Identities=24%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      |..-|+|+||||+|||-+||++|-.....|+..  -+++..+.|
T Consensus       704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG  747 (953)
T KOG0736|consen  704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG  747 (953)
T ss_pred             ccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence            356799999999999999999999999999864  677777777

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00056  Score=63.77  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             HHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        86 ~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ++..+.-+++|+.+||.|+|||.+||.||+-.|.||+
T Consensus        43 ~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi   79 (444)
T COG1220          43 ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI   79 (444)
T ss_pred             HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            3467778999999999999999999999999999998

>PRK13974 thymidylate kinase; Provisional

Probab=97.40  E-value=0.0017  Score=55.14  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=24.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +|..|+|.|++||||||+++.|++.+.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999998874

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.40  E-value=0.00026  Score=65.95  Aligned_cols=47  Identities=19%  Similarity=0.193  Sum_probs=36.6

Q ss_pred             cchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        76 ~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      ....+++.++.  +.  ..+++|+|+||+||||+++.+|+.++..|+..+.
T Consensus        23 ~~~~L~~~i~~--~~--~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a   69 (413)
T PRK13342         23 PGKPLRRMIEA--GR--LSSMILWGPPGTGKTTLARIIAGATDAPFEALSA   69 (413)
T ss_pred             cchHHHHHHHc--CC--CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            34556666654  33  3589999999999999999999999988876543

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.40  E-value=0.00041  Score=69.20  Aligned_cols=42  Identities=21%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      .+..|+|+||||||||++++.+|..++++|+..  .+++....|
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG  529 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG  529 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence            357799999999999999999999999988755  345554444

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.39  E-value=0.00014  Score=65.82  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~  129 (212)
                      ++..|.|+|.+||||||+++.|++.++     ..+++.|.++.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            357899999999999999999998774     56899999875

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.38  E-value=0.00019  Score=67.23  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .++.|+|+|+||||||++++.+|..++.+|+..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            468999999999999999999999999988754

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.37  E-value=0.00025  Score=65.97  Aligned_cols=28  Identities=21%  Similarity=0.263  Sum_probs=25.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +.+.++|+|||||||||+++.||+.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4577899999999999999999999965

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.36  E-value=0.00039  Score=67.33  Aligned_cols=29  Identities=28%  Similarity=0.251  Sum_probs=26.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      .++.|+|+||||||||++++.+|+.++.+
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            36789999999999999999999998654

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.36  E-value=0.00026  Score=56.52  Aligned_cols=38  Identities=34%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             HHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           83 KAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        83 ~~~~~~~~l~-~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      .++.+...++ +..|+|.|..|+||||+.|.+++.+|..
T Consensus         4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen    4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3445545554 6789999999999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.34  E-value=0.00095  Score=58.16  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=43.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhchHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ  150 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr  150 (212)
                      +..|++||.|+.|||++|+.|++.|.     ...++..++..+..+...-.++++...++...
T Consensus        12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~   74 (222)
T PF01591_consen   12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKK   74 (222)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHH
Confidence            56899999999999999999998764     36789999999888743345667666555544

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0011  Score=61.31  Aligned_cols=84  Identities=20%  Similarity=0.229  Sum_probs=54.9

Q ss_pred             CCCceeecccccCCCc-----cccceeccCCcchH-HHHHHH---HHhcccCC-----cEEEEEccCCCCHHHHHHHHHH
Q 028227           50 RKPRITTRSIADDTTS-----NTVTKVAAEDPSFA-VKKKAA---DISTELKG-----TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        50 ~~~~~~t~~~~~~~~~-----~~~~~~~~~d~~~~-lk~~~~---~~~~~l~~-----~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .|+..-.|+-+.++..     +.|..++.++..++ ||+...   .|...+.|     +-|+|+||||+|||.+|+++|.
T Consensus       109 ~pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT  188 (439)
T KOG0739|consen  109 EPEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT  188 (439)
T ss_pred             ChhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence            3455555665555432     24777777776543 432211   12333333     4599999999999999999999


Q ss_pred             HhCCcEe--ehhHHHHHHhC
Q 028227          116 ALRYYYF--DSDSLVFEAAG  133 (212)
Q Consensus       116 ~lg~~~~--d~D~l~~~~~G  133 (212)
                      .-+-.|+  .+.+++.+.+|
T Consensus       189 EAnSTFFSvSSSDLvSKWmG  208 (439)
T KOG0739|consen  189 EANSTFFSVSSSDLVSKWMG  208 (439)
T ss_pred             hcCCceEEeehHHHHHHHhc
Confidence            8887775  55677777766

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0012  Score=60.91  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH--------------HHhCCCchhhhhh------hhchHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF--------------EAAGGESAAKAFR------ESDEKGYQQ  151 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~--------------~~~G~~si~ei~~------~~Ge~~fr~  151 (212)
                      +.+.|+|+|+.|+|||-|+--||.+++-..+++|.+--              +.-| .+ +.++.      +.-...|+.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~g-VP-HHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKG-VP-HHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCC-CC-hHHhCcCChHhhccHHHHHH
Confidence            46789999999999999999999999999999998721              1111 11 11111      223456676


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCc
Q 028227          152 AETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus       152 ~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      .-..+.+.+..++..=|-.||+
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs  105 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGS  105 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCc
Confidence            6677888888766644445654

>PRK06761 hypothetical protein; Provisional

Probab=97.30  E-value=0.00024  Score=63.98  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      +..|+|.|++||||||+++.|++.+....++.+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~   36 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL   36 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence            4679999999999999999999999865444443

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.30  E-value=0.00039  Score=65.16  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehh
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD  125 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D  125 (212)
                      .+++.|+.|+|.||||||||.+|-.+|+.||  .||+...
T Consensus        45 ~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is   84 (398)
T PF06068_consen   45 EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS   84 (398)
T ss_dssp             TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred             cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence            3788899999999999999999999999998  7887543

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.29  E-value=0.00029  Score=62.08  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=26.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ...++|+||||+|||++++.+|+.++..+.
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~   59 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLK   59 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            457999999999999999999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.29  E-value=0.00029  Score=58.57  Aligned_cols=26  Identities=35%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .+++|+||+|||||.+++.||+.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            58899999999999999999999995

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK10646 ADP-binding protein; Provisional

Probab=97.28  E-value=0.00056  Score=56.56  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~-~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .+.++.++.+...++ +..|+|.|.-|+||||++|.|++.+|+
T Consensus        12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            356667777877776 568899999999999999999999997

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.28  E-value=0.0039  Score=53.51  Aligned_cols=119  Identities=16%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHhccc--CCcEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHHhC---CCchhhhhh---
Q 028227           78 FAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEAAG---GESAAKAFR---  142 (212)
Q Consensus        78 ~~lk~~~~~~~~~l--~~~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l~~~~~G---~~si~ei~~---  142 (212)
                      ......++.+....  ....++|.|++|+|||.+.++++.++       .+.|++.+++..+...   ...+.++..   
T Consensus        17 ~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~   96 (219)
T PF00308_consen   17 ELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR   96 (219)
T ss_dssp             HHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh
Confidence            33344445553332  23579999999999999999998653       2568888887654421   011111111   


Q ss_pred             ------------hhchHHHHHHHHHHHHHHhcCCCEEEEeCCceee-----chhhHHhccCCeEEEEEech
Q 028227          143 ------------ESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQ-----SSANLYEISGTFKTWNIIMD  196 (212)
Q Consensus       143 ------------~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~V~-----~~~~~~~L~~g~vV~Ld~~~  196 (212)
                                  -.+.+...+.-..++..+...+..+|.++...+.     .+.-...|..|.++-|+.|.
T Consensus        97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd  167 (219)
T PF00308_consen   97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD  167 (219)
T ss_dssp             TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred             cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence                        1122333333445666666655555544443322     22333345589999998764

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.26  E-value=0.0003  Score=66.85  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=29.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+..|+|+|+||||||++++.+|..++..|+..
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V  248 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV  248 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence            467899999999999999999999999888754

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00087  Score=65.63  Aligned_cols=53  Identities=28%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcccC------------CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh-hHHHHHH
Q 028227           79 AVKKKAADISTELK------------GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-DSLVFEA  131 (212)
Q Consensus        79 ~lk~~~~~~~~~l~------------~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~-D~l~~~~  131 (212)
                      +-|+..+||...|+            ++-|+|+||||+|||-+||++|-.-|+||+.. ...+.++
T Consensus       311 EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm  376 (752)
T KOG0734|consen  311 EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM  376 (752)
T ss_pred             HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence            45566666644332            46799999999999999999999999999854 3334443

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.23  E-value=0.0011  Score=65.59  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.|+|+|+||||||++++.+|..++.+|+..+
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is  217 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS  217 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            456999999999999999999999999987654

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.22  E-value=0.00093  Score=60.65  Aligned_cols=45  Identities=22%  Similarity=0.217  Sum_probs=36.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      ++-.+++|++.||||+|||-+||+||.....|++..  -.++-+..|
T Consensus       147 g~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG  193 (368)
T COG1223         147 GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG  193 (368)
T ss_pred             cccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence            334689999999999999999999999999988754  455655555

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.0015  Score=59.61  Aligned_cols=36  Identities=25%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      +..|+|+||.+||||.+|-.||+++|.+++++|...
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ   38 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ   38 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence            567999999999999999999999999999999973

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.20  E-value=0.00037  Score=62.74  Aligned_cols=30  Identities=23%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ...++|+||||+|||++++.+|+.+++.+.
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            468999999999999999999999998664

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.00044  Score=69.59  Aligned_cols=55  Identities=27%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhcccC------------CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           79 AVKKKAADISTELK------------GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        79 ~lk~~~~~~~~~l~------------~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      ..|+.++||...|+            ++-++|+||||||||-+||++|-.-|+||+..  -++++...|
T Consensus       318 eAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g  386 (774)
T KOG0731|consen  318 EAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG  386 (774)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence            66777888754442            46799999999999999999999999999854  444554444

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.17  E-value=0.00038  Score=62.76  Aligned_cols=34  Identities=35%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ..+.+..++|.|+||+|||++++.+|+.++++|+
T Consensus        39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            4556889999999999999999999999998886

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.17  E-value=0.0019  Score=64.61  Aligned_cols=37  Identities=30%  Similarity=0.282  Sum_probs=31.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehh--HHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD--SLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D--~l~  128 (212)
                      .+.+++|+|+||+|||++++.||+.+          ++.++..|  .++
T Consensus       202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~  250 (731)
T TIGR02639       202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL  250 (731)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence            46799999999999999999999987          76777655  554

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.17  E-value=0.00066  Score=56.66  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=33.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G  133 (212)
                      ++.+++|+|++|+|||.+|..++.++     .+.|++.++++.+...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~   92 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ   92 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence            47899999999999999999998643     4678999999987653

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.17  E-value=0.00051  Score=67.07  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +.+.++...++|+||+||||||..+.||+.+|+.++.-
T Consensus       104 ~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew  141 (634)
T KOG1970|consen  104 FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW  141 (634)
T ss_pred             hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence            35666678899999999999999999999999987743

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.16  E-value=0.00034  Score=60.21  Aligned_cols=33  Identities=15%  Similarity=0.196  Sum_probs=27.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~  128 (212)
                      |.|.|++||||||+++.|+..+.       ..++..|.++
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            67899999999999999999883       4567778775

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00041  Score=65.72  Aligned_cols=42  Identities=26%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh--HHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D--~l~~~~~G  133 (212)
                      .++.|+|+||||||||.+|+++|..++++|+..+  ++.-+..|
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vG  318 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVG  318 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccc
Confidence            3568999999999999999999999999887554  44443344

>PRK09183 transposase/IS protein; Provisional

Probab=97.14  E-value=0.00068  Score=59.74  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~  129 (212)
                      ++.+++|+|++|+|||+++..|+...   |  +.|++..+++.
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~  143 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL  143 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence            47899999999999999999997553   4  45667666653

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00035  Score=64.77  Aligned_cols=28  Identities=32%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcE
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYY  121 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~  121 (212)
                      +.|+|.||||+|||+++|+||++|.++.
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~  205 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRT  205 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeee
Confidence            5688999999999999999999997653

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.10  E-value=0.0042  Score=58.49  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----C--CcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g--~~~~d~D~l~~~~  131 (212)
                      ...++|+|++|+|||+++++++..+     +  +.|++.+++..+.
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~  193 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF  193 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            3679999999999999999999876     3  4477887765543

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.08  E-value=0.00054  Score=59.62  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=26.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ...|+|-||.|+||||+|+.||++++.+.+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            367899999999999999999999996553

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.07  E-value=0.00058  Score=56.67  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|+|+|+||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.07  E-value=0.00044  Score=52.68  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      |+|.|++|+|||++++.||+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999987664

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.05  E-value=0.00037  Score=56.41  Aligned_cols=39  Identities=33%  Similarity=0.332  Sum_probs=26.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeeh----hHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS----DSLVFEAAG  133 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~----D~l~~~~~G  133 (212)
                      .|+|.|+||+|||++++.||+.+|..|-+.    |-+-....|
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G   43 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG   43 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence            378999999999999999999999988644    555566665

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.05  E-value=0.0014  Score=57.96  Aligned_cols=24  Identities=25%  Similarity=0.187  Sum_probs=22.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .++|+|++|+||||+++.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999999874

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.03  E-value=0.00072  Score=52.79  Aligned_cols=35  Identities=26%  Similarity=0.122  Sum_probs=28.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~  129 (212)
                      +..+.|+|++||||||+.+.+.  -|-..++.|++..
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~   49 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE   49 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence            5789999999999999999997  4545667776644

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.03  E-value=0.00064  Score=67.81  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+|+||||||++++.+|..++.+|+..+
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~  244 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN  244 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence            3578999999999999999999999998887543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.01  E-value=0.00064  Score=57.37  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+|+++|+||+||||+++.+|+.|
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHH
Confidence            4689999999999999999999776

>PRK08181 transposase; Validated

Probab=97.01  E-value=0.00094  Score=59.58  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~  131 (212)
                      ++.+++|+|++|+|||.++..++..+   |  +.|++..+++.+.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            46899999999999999999998643   4  6678888887754

>PLN03025 replication factor C subunit; Provisional

Probab=96.99  E-value=0.0013  Score=59.14  Aligned_cols=24  Identities=29%  Similarity=0.166  Sum_probs=22.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+++|+||||+||||+++.+|+.+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            568999999999999999999987

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=96.99  E-value=0.0021  Score=58.05  Aligned_cols=26  Identities=15%  Similarity=0.091  Sum_probs=23.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +..|.|.|++|+||||+++.|+..+.
T Consensus        82 pfIIgiaGsvavGKST~ar~L~~ll~  107 (283)
T COG1072          82 PFIIGIAGSVAVGKSTTARILQALLS  107 (283)
T ss_pred             CEEEEeccCccccHHHHHHHHHHHHh
Confidence            56799999999999999999998774

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.99  E-value=0.00082  Score=55.81  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=26.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC--CcEeeh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR--YYYFDS  124 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~  124 (212)
                      ..|+|+|++|||||++|..++..++  +.|+.+
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            4689999999999999999999987  455555

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.98  E-value=0.0005  Score=61.89  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~  129 (212)
                      |.|+|.+||||||+++.|++.++     +.+++.|+++.
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            78999999999999999998764     57899999876

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.97  E-value=0.00072  Score=51.53  Aligned_cols=25  Identities=32%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +..++|+|++|+|||++++.+++.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999876

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.97  E-value=0.00097  Score=54.94  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +++.|+|+||+||||+||++.|.+.++
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            467899999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=96.97  E-value=0.0014  Score=57.84  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ++...+|+|+||+||.|++..|++.+++.++.+.++..+.
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~   53 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDE   53 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHH
Confidence            4688999999999999999999999999999998887765

>PRK07429 phosphoribulokinase; Provisional

Probab=96.97  E-value=0.00074  Score=61.80  Aligned_cols=36  Identities=22%  Similarity=0.072  Sum_probs=31.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC---CcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~l~  128 (212)
                      ...|.|+|++||||||+++.|++.++   ...++.|+++
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            46789999999999999999999987   5678888874

>PRK06526 transposase; Provisional

Probab=96.95  E-value=0.001  Score=58.76  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~  131 (212)
                      +.+++|+|++|+|||+++..|+..+   |  +.|+...+++.+.
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l  141 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL  141 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence            6799999999999999999998653   3  4556666666544

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00059  Score=65.02  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +--+|+||||+||||+..++|..|+|.++|++
T Consensus       236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLe  267 (457)
T KOG0743|consen  236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLE  267 (457)
T ss_pred             ccceeeCCCCCCHHHHHHHHHhhcCCceEEee
Confidence            55789999999999999999999999998764

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.95  E-value=0.0033  Score=62.19  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l~~~~  131 (212)
                      ..++|+|++|+|||.|+++++..+       .+.|+++++++.++
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            459999999999999999999865       34788888877554

>PRK12377 putative replication protein; Provisional

Probab=96.95  E-value=0.0026  Score=56.12  Aligned_cols=39  Identities=15%  Similarity=0.161  Sum_probs=31.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~  131 (212)
                      ..+++|+|++|+|||+++.++|..+   |  +.|++..+++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            3689999999999999999999876   3  3577777776644

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.94  E-value=0.00091  Score=62.72  Aligned_cols=30  Identities=20%  Similarity=0.112  Sum_probs=27.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      .++|+|+|++|||||||++.||+.+|..++
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            578999999999999999999999998754

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.92  E-value=0.0073  Score=55.92  Aligned_cols=39  Identities=21%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----C--CcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g--~~~~d~D~l~~~~  131 (212)
                      ...++|+|++|+|||+++++++..+     +  +.|++++++..+.
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~  181 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF  181 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence            3578999999999999999999765     3  4577887765543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.92  E-value=0.001  Score=60.61  Aligned_cols=38  Identities=16%  Similarity=0.056  Sum_probs=31.7

Q ss_pred             HHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        85 ~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      ..+.+.+ .+.|+|+|++|+||||+++.|++.++.+++.
T Consensus       155 ~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       155 REVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             HHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4445555 4689999999999999999999999988753

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.92  E-value=0.0013  Score=63.02  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+||||+||||+|+.+|+.+++
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456899999999999999999999876

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.90  E-value=0.0098  Score=56.32  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l~~~~  131 (212)
                      ..++|+|++|+|||+++++++..+       .+.|+++++++.+.
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~  175 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL  175 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            579999999999999999999874       35678888876554

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.0097  Score=53.62  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=33.7

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcE-eehhHHHH
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVF  129 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~-~d~D~l~~  129 (212)
                      .+...+..|+|=|.+|+||||+|..||.+||... +.+|.+.+
T Consensus        84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE  126 (299)
T COG2074          84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE  126 (299)
T ss_pred             hccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence            3444567777778999999999999999999865 57777655

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.87  E-value=0.0015  Score=65.74  Aligned_cols=47  Identities=17%  Similarity=0.211  Sum_probs=35.9

Q ss_pred             chHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        77 ~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      ...|++.++.  +.  ..+++|+|+||+||||+++.+|+.++..|+..+..
T Consensus        40 ~~~L~~~i~~--~~--~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~   86 (725)
T PRK13341         40 GRLLRRAIKA--DR--VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV   86 (725)
T ss_pred             hHHHHHHHhc--CC--CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence            3455544443  33  35899999999999999999999999888776654

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.87  E-value=0.0015  Score=56.82  Aligned_cols=39  Identities=18%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      +..++|+|+||+||||+|+.|+.  ...+++.|.-.....|
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g   50 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIG   50 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccC
Confidence            46799999999999999999972  3566777775444433

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF05729 NACHT: NACHT domain

Probab=96.87  E-value=0.0011  Score=51.83  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++|+|.+|+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            57899999999999999999765

>PRK05642 DNA replication initiation factor; Validated

Probab=96.86  E-value=0.0032  Score=54.45  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH-----hCCcEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA-----LRYYYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~-----lg~~~~d~D~l~~  129 (212)
                      ...++|+|++|+|||.+++.++.+     ..+.|++.+++..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence            367899999999999999999753     3567889988764

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.85  E-value=0.0014  Score=63.20  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|+|++|+||||+|+.||+.+++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4568999999999999999999999874

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.85  E-value=0.00092  Score=59.51  Aligned_cols=33  Identities=12%  Similarity=0.009  Sum_probs=28.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV  128 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~  128 (212)
                      |.|+|++||||||+++.|+..+   +...++.|++.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            6799999999999999999877   46678888764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.85  E-value=0.0017  Score=59.60  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+||+|+||||+++.+|+.+++
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            356789999999999999999999875

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.004  Score=62.71  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      .+.|+|+||||||||.++.++|...++.|+..  -+++.++.|
T Consensus       701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG  743 (952)
T KOG0735|consen  701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG  743 (952)
T ss_pred             ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence            67899999999999999999999999999864  677777777

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.84  E-value=0.0013  Score=53.25  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL  127 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l  127 (212)
                      .++++|++|+||||++..+|..+   |  +.++|.|..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            57899999999999999998765   4  456888843

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.82  E-value=0.0069  Score=53.34  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~  131 (212)
                      ..++|.|++|+|||+++..+|..+   |  +.|++..+++...
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l  142 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM  142 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence            589999999999999999999877   3  4566777766543

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.82  E-value=0.0011  Score=66.96  Aligned_cols=32  Identities=25%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .+++|+||+|||||++|+.||+.++.+++..|
T Consensus       489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id  520 (758)
T PRK11034        489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD  520 (758)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence            36899999999999999999999998886444

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=96.81  E-value=0.0019  Score=60.98  Aligned_cols=50  Identities=16%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhH
Q 028227           73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS  126 (212)
Q Consensus        73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~  126 (212)
                      -+.++..|++-++.  +.+  .+++|+||||+||||+|+.|+...   .+.|+.+..
T Consensus       146 lv~q~gllrs~ieq--~~i--pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA  198 (554)
T KOG2028|consen  146 LVGQDGLLRSLIEQ--NRI--PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA  198 (554)
T ss_pred             hcCcchHHHHHHHc--CCC--CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence            34456677766666  554  689999999999999999998644   466776544

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.80  E-value=0.0028  Score=52.36  Aligned_cols=41  Identities=29%  Similarity=0.246  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           79 AVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        79 ~lk~~~~~~~~~l-~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +.++.++.+...+ .+..|+|-|.-|+||||++|.+++.+|.
T Consensus        10 ~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          10 ATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             HHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            4556677777777 5889999999999999999999999994

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.78  E-value=0.0011  Score=51.19  Aligned_cols=26  Identities=42%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            47899999999999999999997543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.77  E-value=0.0028  Score=56.07  Aligned_cols=31  Identities=13%  Similarity=-0.013  Sum_probs=25.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      +..++|+|++|+|||++++.+++.++..++.
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~   73 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLF   73 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCccceE
Confidence            3455668999999999999999998866543

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.76  E-value=0.0012  Score=52.86  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=18.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+..++|+|++|+|||++.+.+.+.+
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46889999999999999999887654

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.76  E-value=0.0013  Score=57.71  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=27.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      .++|+||.|+|||.+|-.||+++|++++..|.+.
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq   36 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ   36 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence            5789999999999999999999999999999873

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.76  E-value=0.0031  Score=56.21  Aligned_cols=36  Identities=25%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----C---CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g---~~~~d~D~l  127 (212)
                      ++..|.|+|+.|+||||++..||..+    |   +.+++.|.+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~  235 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY  235 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence            35689999999999999999998754    3   357888874

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0023  Score=60.66  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=28.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +.|+++||||+|||-+||++|...|-.|++.
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV  276 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV  276 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence            6899999999999999999999999998854

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.75  E-value=0.0013  Score=71.68  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~  129 (212)
                      .++.|+|+||||||||.+||+||...++||+  ++.+++.
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            4789999999999999999999999999986  5566664

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.74  E-value=0.0027  Score=59.61  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.0

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEee
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD  123 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d  123 (212)
                      +.+.|+-|+++||||+|||.+|-.+|+.||  .||+.
T Consensus        61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~   97 (450)
T COG1224          61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA   97 (450)
T ss_pred             CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence            788999999999999999999999999998  66653

>cd01394 radB RadB

Probab=96.73  E-value=0.0018  Score=54.36  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      +..++..+.|.|+||||||+++..+|...     .+.|+|++.
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            55678899999999999999999998654     345787764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.73  E-value=0.0019  Score=53.82  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~  126 (212)
                      +..++..+.|+|+||||||+++..++...   |  +.|+|++.
T Consensus         8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237         8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            45568999999999999999999988543   3  67788864

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0011  Score=61.94  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +++.|+|.||||||||-+|+++|++.|..|+..+
T Consensus       126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~  159 (386)
T KOG0737|consen  126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS  159 (386)
T ss_pred             CCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence            3678999999999999999999999999998653

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.73  E-value=0.0011  Score=55.81  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC-CcEeehhHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL  127 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg-~~~~d~D~l  127 (212)
                      |+=++.+||||||+|..|+.-+| |.++-.|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            34478999999999999999999 999999996

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.71  E-value=0.0014  Score=58.27  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=26.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH----hCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA----LRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~----lg~~~~d~D  125 (212)
                      +|.++-|+|.+||||||+++.||-.    .|-..+|..
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~   69 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK   69 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence            4889999999999999999999842    244445553

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0015  Score=62.56  Aligned_cols=36  Identities=33%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +|.+.+|+|+||.|||||-+++-||+-+++||.=+|
T Consensus       223 ~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcD  258 (564)
T KOG0745|consen  223 ELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICD  258 (564)
T ss_pred             eeecccEEEECCCCCchhHHHHHHHHHhCCCeEEec
Confidence            356789999999999999999999999999997444

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.71  E-value=0.0034  Score=57.53  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~  131 (212)
                      +.+++|+|++|+|||+++.++|..+     .+.|++.++++...
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            4889999999999999999999875     46678888876654

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.69  E-value=0.0023  Score=64.87  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=24.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.+++|+|+||+|||++++.||+.+
T Consensus       199 ~~~n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        199 TKNNPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999976

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.69  E-value=0.002  Score=63.66  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=24.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +++.++|+||||+||||+++.||+.+.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            578999999999999999999999875

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.68  E-value=0.0027  Score=59.10  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=25.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|.||+|+||||+|+.+|+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3458899999999999999999999874

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.67  E-value=0.0039  Score=56.73  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.+++|+|+||+|||++.+.+++.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999866

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.67  E-value=0.0017  Score=59.19  Aligned_cols=30  Identities=27%  Similarity=0.213  Sum_probs=27.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      --.|+|.||||-||||+|..+|..+|..+-
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k   81 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGVNLK   81 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence            368999999999999999999999997654

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.67  E-value=0.0065  Score=56.12  Aligned_cols=108  Identities=21%  Similarity=0.101  Sum_probs=67.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhh-hhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~-~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      ..-+++.|+.|||||++...|++. ++..+|+....+-. | .....+.. +--...|...-...|..+.....++|-+-
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr-G-S~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~E  217 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR-G-SSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDE  217 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc-c-ccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEec
Confidence            345778899999999999999765 88899999987643 2 11111111 11234455444445554443233444322


Q ss_pred             C---c-eeechhhHHhccCCeEEEEEech-hhhhccc
Q 028227          172 N---G-AVQSSANLYEISGTFKTWNIIMD-RRSSRHG  203 (212)
Q Consensus       172 g---G-~V~~~~~~~~L~~g~vV~Ld~~~-~~v~R~~  203 (212)
                      +   | +.+...-++.|+.+.+|+|+.+. .|++|..
T Consensus       218 s~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~  254 (345)
T PRK11784        218 SRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVERLL  254 (345)
T ss_pred             cccccCccCCHHHHHHHhhCCEEEEECCHHHHHHHHH
Confidence            2   2 23445667788899999999975 5777754

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.66  E-value=0.0025  Score=65.04  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.+++|+|+||+|||++++.||..+
T Consensus       198 ~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        198 TKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CcCceEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999987

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=96.65  E-value=0.0023  Score=57.60  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.+++|+|+||+|||++++.+++.+
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998765

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.65  E-value=0.0025  Score=61.69  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=25.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|+|++|+||||+|+.+|+.+++.
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4679999999999999999999999874

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.65  E-value=0.0045  Score=58.94  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~l~  128 (212)
                      ++..|+|+|++||||||++..||..+    |  ..+++.|.+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            45679999999999999999999754    2  4568888853

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.64  E-value=0.0027  Score=61.32  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=26.4

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +.+ +..++|+|++|+||||+|+.+|+.+++.
T Consensus        32 ~ri-~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         32 NKI-PQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CCC-CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            444 5689999999999999999999988653

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.62  E-value=0.0031  Score=60.97  Aligned_cols=39  Identities=21%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      .|++.++.  +.+ +..++|+|++|+||||+|+.||+.+++.
T Consensus        27 ~L~~~~~~--~~l-~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         27 ALSNALDQ--QYL-HHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             HHHHHHHh--CCC-CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            44444444  444 4567899999999999999999999874

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.62  E-value=0.0029  Score=63.30  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .|++.++.  +.+ ...++|+|++|+||||+|+.||+.+++
T Consensus        26 ~L~~aI~~--grl-~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960         26 ALSSALER--GRL-HHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             HHHHHHHc--CCC-CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45544443  443 467899999999999999999999987

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.62  E-value=0.0021  Score=55.22  Aligned_cols=26  Identities=27%  Similarity=0.192  Sum_probs=23.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ...++|+|++|+||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            34789999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.62  E-value=0.0019  Score=54.17  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0053  Score=56.13  Aligned_cols=42  Identities=21%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      .++-|+++||||+|||-+|+++|.+.+.-|+..  .+++.++.|
T Consensus       210 ppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvg  253 (435)
T KOG0729|consen  210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG  253 (435)
T ss_pred             CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhh
Confidence            367899999999999999999999999888753  556666655

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.60  E-value=0.002  Score=53.84  Aligned_cols=25  Identities=32%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4788999999999999999999854

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.59  E-value=0.0019  Score=55.42  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..|.|+||+||||||+-|.+|.-.
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhcc
Confidence            57899999999999999999999743

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.58  E-value=0.0021  Score=53.01  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.58  E-value=0.002  Score=54.01  Aligned_cols=26  Identities=38%  Similarity=0.461  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

>PRK08727 hypothetical protein; Validated

Probab=96.58  E-value=0.016  Score=49.94  Aligned_cols=37  Identities=24%  Similarity=0.203  Sum_probs=28.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l~~  129 (212)
                      ...++|+|++|+|||+++++++.++   |.  .|+..++...
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~   82 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG   82 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence            3569999999999999999986543   43  5777766543

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.58  E-value=0.0066  Score=55.02  Aligned_cols=40  Identities=20%  Similarity=0.136  Sum_probs=33.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~  131 (212)
                      .+..++|+|++|+|||.++.++|..+   |  +.|+...+++.+.
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l  199 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL  199 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence            35789999999999999999999876   4  4567888876655

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.58  E-value=0.0021  Score=53.65  Aligned_cols=26  Identities=38%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.57  E-value=0.0018  Score=65.16  Aligned_cols=39  Identities=21%  Similarity=0.222  Sum_probs=33.2

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      .+....+..+|+|+||-||||||..+|+.-||.+++...
T Consensus       321 s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA  359 (877)
T KOG1969|consen  321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA  359 (877)
T ss_pred             cCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence            344456788999999999999999999999999997643

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.57  E-value=0.0021  Score=53.73  Aligned_cols=26  Identities=50%  Similarity=0.534  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.57  E-value=0.0021  Score=54.72  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=96.56  E-value=0.0038  Score=54.80  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=28.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcE-eehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~-~d~D~l~~~~  131 (212)
                      .|.|+|+|||||||+++.+.+ .|.++ +.+-+.+++.
T Consensus         2 iI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~   38 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI   38 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence            589999999999999999966 46666 7665555543

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.56  E-value=0.0031  Score=60.82  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=33.3

Q ss_pred             cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .-+.+.-|++|.++     +..-|++.|+||+||||++++||+-+
T Consensus       248 dY~L~dkl~eRL~e-----raeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         248 DYGLSDKLKERLEE-----RAEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hcCCCHHHHHHHHh-----hhcceEEecCCCCChhHHHHHHHHHH
Confidence            44556778888888     34689999999999999999999865

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.0021  Score=57.14  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|.-|.|+|++||||||+-+.+|-
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999999999984

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.56  E-value=0.0022  Score=64.23  Aligned_cols=34  Identities=32%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLV  128 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~  128 (212)
                      +++|+||+|+|||++|+.||+.++.+++  |+.++.
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~  521 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM  521 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence            5789999999999999999999998765  444443

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=96.56  E-value=0.0027  Score=58.36  Aligned_cols=47  Identities=15%  Similarity=-0.016  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF  129 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~  129 (212)
                      .|++...+  ..  ....++.||||+|||+.++++|+++..+-.--+.+.+
T Consensus        47 ~L~~a~~~--~~--lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~   93 (346)
T KOG0989|consen   47 VLKNALLR--RI--LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE   93 (346)
T ss_pred             HHHHHHhh--cC--CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence            45655555  22  3578999999999999999999999886555555554

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.55  E-value=0.002  Score=61.72  Aligned_cols=28  Identities=25%  Similarity=0.160  Sum_probs=25.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .+.+|+|.|+||+|||++|+.||..+..
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4789999999999999999999998853

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0032  Score=61.68  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC---cEeehhHHHHHHhCC--Cchhhhhhhh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY---YYFDSDSLVFEAAGG--ESAAKAFRES  144 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~---~~~d~D~l~~~~~G~--~si~ei~~~~  144 (212)
                      +-|+|+||||+|||-+||.+.+.|+.   ..++.-+++.++.|.  ..++++|++.
T Consensus       257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDA  312 (744)
T KOG0741|consen  257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADA  312 (744)
T ss_pred             eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhH
Confidence            67999999999999999999999985   468999999999882  2345556554

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.55  E-value=0.0044  Score=55.90  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=29.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~  129 (212)
                      +.+|+|+|++||||||+.+.|.+.+     +...+-.++..|
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E  173 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE  173 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence            5799999999999999999999876     344555555444

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.54  E-value=0.0022  Score=54.45  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999998543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.53  E-value=0.003  Score=64.92  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      |++.+..  +.+ +..++|+|++|+||||+++.||+.+++.
T Consensus        28 LknaI~~--~rl-~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         28 LTNALTQ--QRL-HHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             HHHHHHh--CCC-CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            4444443  444 3456899999999999999999999875

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.53  E-value=0.0023  Score=53.40  Aligned_cols=26  Identities=38%  Similarity=0.498  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.53  E-value=0.0024  Score=49.37  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLV  128 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~  128 (212)
                      ++|+|++|+|||++++.++...     ...|++.+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~   39 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI   39 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence            6799999999999999998776     24566665544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK06921 hypothetical protein; Provisional

Probab=96.53  E-value=0.0064  Score=53.92  Aligned_cols=38  Identities=29%  Similarity=0.231  Sum_probs=29.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----CC--cEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~--~~~d~D~l~~  129 (212)
                      .+.+++|+|++|+|||+++.++|..+    |+  .|+...+++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~  159 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG  159 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence            36789999999999999999998865    33  4666655544

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.52  E-value=0.0023  Score=54.52  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999998543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.52  E-value=0.0024  Score=53.28  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.52  E-value=0.0025  Score=53.05  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             HHHhcccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        85 ~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +++...++++.++|+|++|+||||+...|...
T Consensus        27 ~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   27 EELKELLKGKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             HHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence            44556677799999999999999999999543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13695 putative NTPase; Provisional

Probab=96.51  E-value=0.0038  Score=50.90  Aligned_cols=27  Identities=26%  Similarity=0.194  Sum_probs=23.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---CCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---RYY  120 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~  120 (212)
                      .+|+|+|++||||||+.+.++..+   |+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~   30 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYK   30 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence            378999999999999999988765   555

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.51  E-value=0.0023  Score=53.76  Aligned_cols=25  Identities=40%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.51  E-value=0.0027  Score=52.67  Aligned_cols=25  Identities=20%  Similarity=0.188  Sum_probs=23.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +..++|+|++||||||+.+.|+..+
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.50  E-value=0.0051  Score=58.55  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l  127 (212)
                      ++..|+++|++|+||||++..||..+   |  ..+++.|.+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            46789999999999999999999766   3  445777764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.50  E-value=0.0025  Score=53.88  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999999765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.50  E-value=0.0027  Score=53.90  Aligned_cols=35  Identities=26%  Similarity=0.192  Sum_probs=27.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l  127 (212)
                      ++.|+|+||.|+||||..-.||..+     ...++.+|.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            4679999999999999999998765     3456777765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.50  E-value=0.0022  Score=59.19  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      |.-++|+||+||||||+-|.+|-
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            67899999999999999999983

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.50  E-value=0.0022  Score=54.38  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999999854

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.49  E-value=0.0026  Score=52.82  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.49  E-value=0.0025  Score=53.31  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.49  E-value=0.0025  Score=53.67  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.48  E-value=0.0023  Score=53.55  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999999864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.48  E-value=0.0026  Score=53.05  Aligned_cols=26  Identities=42%  Similarity=0.496  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.47  E-value=0.0026  Score=53.96  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.47  E-value=0.012  Score=55.96  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~  128 (212)
                      +..|.|+|++|+||||++..||..+   |  ...+++|.+.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            4679999999999999999999766   5  4557888754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.47  E-value=0.003  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|+++|.+|+||||+.+.|+..
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.47  E-value=0.0027  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.46  E-value=0.0027  Score=53.28  Aligned_cols=26  Identities=42%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.45  E-value=0.0028  Score=53.26  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.45  E-value=0.0025  Score=52.24  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ++|+|+|+.|||||||++.|-.
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            5799999999999999999954

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.45  E-value=0.0028  Score=53.39  Aligned_cols=25  Identities=36%  Similarity=0.297  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.45  E-value=0.0027  Score=54.00  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.44  E-value=0.0038  Score=60.31  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+|+||+||||+++.||+.+.+
T Consensus        36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         36 GHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            455799999999999999999999865

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.44  E-value=0.0027  Score=53.74  Aligned_cols=26  Identities=38%  Similarity=0.365  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.44  E-value=0.0029  Score=51.61  Aligned_cols=26  Identities=42%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.41  E-value=0.0031  Score=52.39  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998653

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0033  Score=60.16  Aligned_cols=46  Identities=17%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHhccc--------CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           77 SFAVKKKAADISTEL--------KGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        77 ~~~lk~~~~~~~~~l--------~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ...|+++++.++..-        .-++|+++||||+|||-+|+.||.+-|+.|-
T Consensus       360 ~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA  413 (630)
T KOG0742|consen  360 HPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYA  413 (630)
T ss_pred             CHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCcee
Confidence            356888898872211        1268999999999999999999999887653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.41  E-value=0.003  Score=53.15  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK08116 hypothetical protein; Validated

Probab=96.40  E-value=0.0055  Score=54.34  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=30.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l~~~~  131 (212)
                      +..++|+|++|+|||.++.++|+.+   +  +.|++..+++...
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            3469999999999999999999875   3  4567777766543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.40  E-value=0.0031  Score=52.87  Aligned_cols=26  Identities=38%  Similarity=0.323  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999998543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.39  E-value=0.0031  Score=53.76  Aligned_cols=25  Identities=36%  Similarity=0.331  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.39  E-value=0.0031  Score=53.35  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.39  E-value=0.0032  Score=53.86  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.39  E-value=0.0032  Score=53.23  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999998653

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.38  E-value=0.0046  Score=60.38  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=23.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ..++|+|++|+||||+|+.||+.+++
T Consensus        39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         39 HAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45789999999999999999999876

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.38  E-value=0.025  Score=49.93  Aligned_cols=40  Identities=23%  Similarity=0.394  Sum_probs=33.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~  131 (212)
                      ++.+++|+|+||+|||.++-+++..+     .+.|+..-+++.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            68999999999999999999998765     34567777777655

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.38  E-value=0.0034  Score=51.46  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.38  E-value=0.0032  Score=53.57  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.36  E-value=0.0033  Score=53.74  Aligned_cols=26  Identities=31%  Similarity=0.315  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.36  E-value=0.008  Score=56.82  Aligned_cols=35  Identities=29%  Similarity=0.189  Sum_probs=28.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-------CCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-------g~~~~d~D~l  127 (212)
                      +..|+|+|++|+||||++..||..+       .+.+++.|..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~  262 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY  262 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence            5689999999999999988887543       2567899985

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.36  E-value=0.0034  Score=53.34  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999854

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.35  E-value=0.0041  Score=52.54  Aligned_cols=38  Identities=24%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH-----------hCCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA-----------LRYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~-----------lg~~~~d~D~  126 (212)
                      +..++..+.|+|+||||||+++..++..           -+..|+|++.
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            4556899999999999999999999743           3456677654

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.35  E-value=0.0072  Score=52.96  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..++|+|++|+|||++++.+++.+
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999987

>PF13479 AAA_24: AAA domain

Probab=96.35  E-value=0.0039  Score=53.05  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      +.+++|+|+||+||||++..+   -+.-|+|+|.=
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g   34 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL---PKPLFIDTENG   34 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCC
Confidence            568999999999999999988   34567777764

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.35  E-value=0.0053  Score=59.52  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|+|++|+||||+|+.||+.+++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         38 HHAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3457899999999999999999999873

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=96.35  E-value=0.024  Score=53.99  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFE  130 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~  130 (212)
                      ..++|+|++|+|||+++++++..+     .+.|++.+.+..+
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~  183 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH  183 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence            579999999999999999999865     3467777766543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.34  E-value=0.0034  Score=52.14  Aligned_cols=24  Identities=42%  Similarity=0.357  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.|+-
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.34  E-value=0.0034  Score=53.23  Aligned_cols=25  Identities=16%  Similarity=0.149  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ++..+.|+|++||||||+.+.|+..
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999853

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.34  E-value=0.0034  Score=54.66  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.34  E-value=0.0037  Score=51.18  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999998653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.34  E-value=0.0036  Score=54.72  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.0

Q ss_pred             EEccCCCCHHHHHHHHHHHhCC
Q 028227           98 LVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        98 LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ++||+||||||+++.+.+.+..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~   22 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES   22 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999987743

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.33  E-value=0.013  Score=49.69  Aligned_cols=103  Identities=17%  Similarity=0.087  Sum_probs=56.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCc----Ee------ehhHHHHHHhCCCchhhhhhhhchHHHH----------H
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----YF------DSDSLVFEAAGGESAAKAFRESDEKGYQ----------Q  151 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~----~~------d~D~l~~~~~G~~si~ei~~~~Ge~~fr----------~  151 (212)
                      .|+-|+++||+|+||-|+-..+...+.-.    |+      ..|.--|..-- .+-.++....++..|.          .
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~a-vs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDA-LSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccc-cCHHHHHHHhhcCceeEEehhcCcccc
Confidence            47889999999999999998888776432    32      12221111000 1223333333333331          1


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCceeechhhHHhccCCeEEEEEechh
Q 028227          152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR  197 (212)
Q Consensus       152 ~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~~~~  197 (212)
                      .=.++-..|. .+..||+.|.-+++. +.+.....-.+|-|.++.+
T Consensus        83 ip~eId~wl~-~G~vvl~NgSRa~Lp-~arrry~~Llvv~ita~p~  126 (192)
T COG3709          83 IPAEIDLWLA-AGDVVLVNGSRAVLP-QARRRYPQLLVVCITASPE  126 (192)
T ss_pred             CchhHHHHHh-CCCEEEEeccHhhhH-HHHHhhhcceeEEEecCHH
Confidence            1133444554 567788877655543 3344444556788887543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.33  E-value=0.0036  Score=53.70  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998543

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.32  E-value=0.0054  Score=61.54  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=25.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|+|++|+||||+++.||+.+++.
T Consensus        38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691         38 HHAYLLTGTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            4678999999999999999999999874

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.32  E-value=0.0036  Score=53.77  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999998653

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.012  Score=53.57  Aligned_cols=42  Identities=24%  Similarity=0.217  Sum_probs=35.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G  133 (212)
                      .++-|+++||||||||-++|++|......|+  ...+++.+++|
T Consensus       188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg  231 (408)
T KOG0727|consen  188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG  231 (408)
T ss_pred             CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence            4688999999999999999999998877776  45677777777

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.32  E-value=0.0038  Score=52.04  Aligned_cols=26  Identities=42%  Similarity=0.419  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.31  E-value=0.0039  Score=50.80  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0075  Score=55.84  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=35.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G  133 (212)
                      ++.+.|+|+||.|||-+++++|..+|+.|+  .+..+..+..|
T Consensus       166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG  208 (388)
T KOG0651|consen  166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG  208 (388)
T ss_pred             CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence            567899999999999999999999998886  55677777776

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.31  E-value=0.0038  Score=52.06  Aligned_cols=25  Identities=32%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.30  E-value=0.0052  Score=50.61  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      .+.-|+|+|++|+||||++..|.++ |+.++.=|.
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~   46 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADDR   46 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence            4688999999999999999998875 788775443

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.30  E-value=0.0038  Score=53.62  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.29  E-value=0.0037  Score=52.97  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            47899999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.29  E-value=0.0039  Score=53.67  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999999964

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.27  E-value=0.0036  Score=52.30  Aligned_cols=23  Identities=43%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      + .+.|+|++||||||+.+.|+..
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCC
Confidence            6 8999999999999999999854

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=96.26  E-value=0.0054  Score=48.65  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ...+...|.|+|++||||||+.+.|...
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            3344678999999999999999999763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.26  E-value=0.004  Score=53.14  Aligned_cols=26  Identities=19%  Similarity=0.301  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

>PRK10908 cell division protein FtsE; Provisional

Probab=96.26  E-value=0.0041  Score=52.46  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.26  E-value=0.0038  Score=54.97  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=25.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH----hCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA----LRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~----lg~~~~d~  124 (212)
                      +|..+.|+||+||||||+-|.|..-    -|--++|.
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g   63 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG   63 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence            4789999999999999999999531    24445555

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.26  E-value=0.0069  Score=42.70  Aligned_cols=30  Identities=30%  Similarity=0.228  Sum_probs=24.9

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh---CCcEeehh
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL---RYYYFDSD  125 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D  125 (212)
                      +++.|..|+||||++..+|..+   |+..+-.|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            6788999999999999999887   66665555

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.26  E-value=0.0041  Score=53.15  Aligned_cols=26  Identities=31%  Similarity=0.213  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.26  E-value=0.0041  Score=52.51  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.||..+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            47899999999999999999998654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.25  E-value=0.0036  Score=52.51  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccC
Confidence            47899999999999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.25  E-value=0.0041  Score=53.41  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999953

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.25  E-value=0.0042  Score=53.06  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.25  E-value=0.004  Score=54.01  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999999998653

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.25  E-value=0.0043  Score=52.07  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.25  E-value=0.02  Score=57.34  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .|++.++.  +.+ ...++|+|++|+||||+++.||+.+++
T Consensus        27 ~L~~al~~--gRL-pHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         27 ALTHALEQ--QRL-HHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             HHHHHHHh--CCC-ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34444433  444 456789999999999999999999987

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.25  E-value=0.0042  Score=52.39  Aligned_cols=25  Identities=36%  Similarity=0.403  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.25  E-value=0.0041  Score=53.52  Aligned_cols=26  Identities=31%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.25  E-value=0.0045  Score=50.31  Aligned_cols=25  Identities=36%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.25  E-value=0.0041  Score=52.85  Aligned_cols=25  Identities=36%  Similarity=0.297  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~   29 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGL   29 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999864

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.24  E-value=0.0041  Score=53.57  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.24  E-value=0.0044  Score=53.60  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.+|+|+|+||+|||++++.++.-|
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999999999998654

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.24  E-value=0.0039  Score=53.59  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.24  E-value=0.0044  Score=51.47  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.23  E-value=0.0043  Score=52.56  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.23  E-value=0.0043  Score=53.74  Aligned_cols=26  Identities=15%  Similarity=0.134  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999999654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.23  E-value=0.0044  Score=51.01  Aligned_cols=26  Identities=23%  Similarity=0.186  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.23  E-value=0.0042  Score=52.85  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.22  E-value=0.0043  Score=53.36  Aligned_cols=25  Identities=16%  Similarity=0.127  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999865

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.22  E-value=0.0042  Score=51.96  Aligned_cols=25  Identities=36%  Similarity=0.357  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ++..+.|+|++||||||+.+.|+-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999999999854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.21  E-value=0.0043  Score=52.78  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.21  E-value=0.0047  Score=51.94  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=21.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .|+|+|++||||||+.+.|+..+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            588999999999999999887764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.21  E-value=0.0049  Score=50.31  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.21  E-value=0.0046  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            47899999999999999999998653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.20  E-value=0.0081  Score=51.83  Aligned_cols=25  Identities=32%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ....|.|+|++|+||||+|+.+++.
T Consensus        18 ~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   18 EVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CeEEEEEEcCCcCCcceeeeecccc
Confidence            4578999999999999999999976

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.20  E-value=0.007  Score=61.69  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++++.++-+.. -.+.+++|+|+||+|||++++.||+.+
T Consensus       180 ~ei~~~~~~l~r-~~~~n~lL~G~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       180 EEIRRTIQVLSR-RTKNNPVLIGEPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             HHHHHHHHHHhc-CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            455544443333 246789999999999999999999986

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.19  E-value=0.005  Score=50.15  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999998654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02924 thymidylate kinase

Probab=96.19  E-value=0.005  Score=53.19  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      .++.-|+|.|..||||||+++.|++.+...
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~   43 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL   43 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            347789999999999999999999998543

>PLN02796 D-glycerate 3-kinase

Probab=96.19  E-value=0.0078  Score=55.84  Aligned_cols=36  Identities=14%  Similarity=-0.049  Sum_probs=28.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~  128 (212)
                      +..|.|+|++||||||+++.|+..+.     ...+..|++.
T Consensus       100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796        100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            45689999999999999999998874     3446667665

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.19  E-value=0.0048  Score=51.41  Aligned_cols=26  Identities=35%  Similarity=0.292  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999999998643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.19  E-value=0.0049  Score=50.61  Aligned_cols=26  Identities=42%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.19  E-value=0.0047  Score=52.87  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.19  E-value=0.0046  Score=53.24  Aligned_cols=26  Identities=8%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999999999754

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.011  Score=58.33  Aligned_cols=55  Identities=27%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhcccC------------CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           79 AVKKKAADISTELK------------GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        79 ~lk~~~~~~~~~l~------------~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      +.|+..+|+...|+            ++-++|+||||+|||.+||++|-..++||++.  -+.++-..|
T Consensus       157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG  225 (596)
T COG0465         157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG  225 (596)
T ss_pred             HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence            55666666644443            56799999999999999999999999998754  555555555

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.18  E-value=0.0041  Score=60.12  Aligned_cols=30  Identities=33%  Similarity=0.471  Sum_probs=26.5

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      -.+.+.+|+|.|+||+|||++|+.|++..+
T Consensus        35 aalag~hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         35 AALSGESVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             HHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence            345688999999999999999999998764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.18  E-value=0.0049  Score=51.53  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.18  E-value=0.0095  Score=58.93  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|.||+|+||||+|+.+|+.+.+
T Consensus        38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            467899999999999999999999875

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.17  E-value=0.0048  Score=52.99  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999998543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.0049  Score=53.07  Aligned_cols=25  Identities=12%  Similarity=0.135  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999999865

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.0047  Score=53.44  Aligned_cols=25  Identities=12%  Similarity=0.111  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999964

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.17  E-value=0.0049  Score=51.72  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            57899999999999999999998543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.17  E-value=0.0048  Score=54.09  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.16  E-value=0.0048  Score=53.72  Aligned_cols=26  Identities=31%  Similarity=0.314  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.16  E-value=0.006  Score=62.39  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++++.++-+.. -...+++|+|+||||||++++.||+.+
T Consensus       194 ~ei~~~i~~l~r-~~~~n~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       194 DEIRQMIDILLR-RRQNNPILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             HHHHHHHHHHhc-CCcCceeEECCCCCCHHHHHHHHHHHH
Confidence            344444433222 246799999999999999999999987

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PF13245 AAA_19: Part of AAA domain

Probab=96.16  E-value=0.0069  Score=44.04  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=18.3

Q ss_pred             CcEEEEEccCCCCHH-HHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKT-HLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKT-Tvak~LA~~l  117 (212)
                      ...++|.|+|||||| ++.+.++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            345666999999999 6666666554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.16  E-value=0.0044  Score=54.00  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999999854

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.15  E-value=0.0049  Score=52.99  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999864

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.15  E-value=0.005  Score=51.44  Aligned_cols=25  Identities=40%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999864

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.15  E-value=0.005  Score=52.38  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            57899999999999999999998544

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.15  E-value=0.005  Score=52.41  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            47899999999999999999998653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.15  E-value=0.0049  Score=52.51  Aligned_cols=25  Identities=36%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ++..+.|+|++||||||+.+.|+-.
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~   71 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGI   71 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.15  E-value=0.0078  Score=59.65  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|.|++|+||||+|+.||+.+.+.
T Consensus        38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4568899999999999999999999884

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.15  E-value=0.0049  Score=53.34  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.15  E-value=0.0051  Score=51.88  Aligned_cols=32  Identities=28%  Similarity=0.164  Sum_probs=26.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----CCcEee
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFD  123 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~~~~d  123 (212)
                      +|..+.|+|++||||||+.+.|+..+    |-.+++
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~   68 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR   68 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence            47899999999999999999998654    444454

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=96.15  E-value=0.0051  Score=55.64  Aligned_cols=29  Identities=31%  Similarity=0.485  Sum_probs=24.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      +.|+|+|++|+||||..+.| +.+||.++|
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD   30 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVD   30 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEc
Confidence            36899999999999999999 558987776

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.14  E-value=0.004  Score=54.93  Aligned_cols=33  Identities=27%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +.+.-+|.++.|+|++||||||+++.+++.+..
T Consensus        10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             ecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            345557999999999999999999999987653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.14  E-value=0.0054  Score=55.90  Aligned_cols=35  Identities=26%  Similarity=0.194  Sum_probs=28.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~  126 (212)
                      ++..|.|+|++|+||||++..||..+   |  +.+++.|.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~  152 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT  152 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            46789999999999999999999765   3  44567775

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.14  E-value=0.0053  Score=51.29  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+-+.+..
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            478999999999999999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.14  E-value=0.005  Score=52.84  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999853

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.14  E-value=0.035  Score=56.24  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+++.++-+.. ..+.+++|+|+||+|||++++.||...
T Consensus       193 ~ei~~~i~iL~r-~~~~n~LLvGppGvGKT~lae~la~~i  231 (758)
T PRK11034        193 KELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_pred             HHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            444444443333 346789999999999999999999864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.14  E-value=0.0049  Score=53.92  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.13  E-value=0.0072  Score=60.19  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=24.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      ..++|+|++|+||||+++.||+.+++.
T Consensus        39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         39 HAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            446899999999999999999999883

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.13  E-value=0.0046  Score=58.83  Aligned_cols=26  Identities=27%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|+.+.|+|++||||||+.+.|+..+
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999998544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.13  E-value=0.0052  Score=53.58  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999999864

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.12  E-value=0.0053  Score=52.74  Aligned_cols=26  Identities=15%  Similarity=0.102  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            47899999999999999999998643

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.12  E-value=0.0048  Score=61.33  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=26.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      +..++|+|++||||||+++.+|..+++.+++
T Consensus       110 ~~illL~GP~GsGKTTl~~~la~~l~~~~~E  140 (637)
T TIGR00602       110 KRILLITGPSGCGKSTTIKILSKELGIQVQE  140 (637)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence            4569999999999999999999999876543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.12  E-value=0.0052  Score=52.96  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999999985

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.12  E-value=0.0054  Score=51.52  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998643

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.11  E-value=0.0083  Score=59.44  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=24.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+|++|+||||+++.||+.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         38 HHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            456789999999999999999999987

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.11  E-value=0.0057  Score=57.18  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----C---CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g---~~~~d~D~l  127 (212)
                      ++..++|+||+|+||||++..||..+    |   +.++..|.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            47899999999999999999999653    3   356777776

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.11  E-value=0.0053  Score=53.10  Aligned_cols=26  Identities=12%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.11  E-value=0.0054  Score=48.98  Aligned_cols=26  Identities=42%  Similarity=0.470  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            47889999999999999999997643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.11  E-value=0.0078  Score=49.32  Aligned_cols=29  Identities=17%  Similarity=0.140  Sum_probs=20.4

Q ss_pred             cccCCcE-EEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTS-VFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~-I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.... .+|.||||+|||++...++..+
T Consensus        12 ~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   12 SALSSNGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             HHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence            4455454 7889999999997666666655

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.10  E-value=0.0047  Score=55.44  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=28.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----CCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~~~~d~D~  126 (212)
                      +|..+.|+|-+||||||+||.|..-+    |-.+++..+
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~   76 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD   76 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence            47899999999999999999998644    455666544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.09  E-value=0.006  Score=54.29  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~  126 (212)
                      ++.|.|+|++|+||||++..||..+   |  ..++|+|.
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~  110 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT  110 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            5789999999999999999998766   4  34578885

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.09  E-value=0.005  Score=53.82  Aligned_cols=26  Identities=31%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999999998543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.09  E-value=0.0056  Score=52.80  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999999998643

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.09  E-value=0.0058  Score=51.34  Aligned_cols=25  Identities=28%  Similarity=0.171  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999999854

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.09  E-value=0.0056  Score=52.49  Aligned_cols=25  Identities=40%  Similarity=0.340  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.09  E-value=0.0047  Score=55.14  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----CCcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g~~~~d~D~l~  128 (212)
                      +|..+.|+||+||||||+-|.|+.-+    |-.++|.-++.
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~   67 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA   67 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence            47889999999999999999999855    45667776554

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.09  E-value=0.0058  Score=51.00  Aligned_cols=25  Identities=28%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999854

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.0047  Score=57.03  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G  133 (212)
                      .++-|+|+|.||+|||-+|+++|......|+.  ..+++.++.|
T Consensus       218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG  261 (440)
T KOG0726|consen  218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG  261 (440)
T ss_pred             CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhc
Confidence            36889999999999999999999999888864  3566776666

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=96.08  E-value=0.005  Score=52.61  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999999875

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.08  E-value=0.0058  Score=51.43  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~   50 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGE   50 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999854

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=96.08  E-value=0.0051  Score=52.79  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.|+-
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~G   55 (252)
T CHL00131         32 KGEIHAIMGPNGSGKSTLSKVIAG   55 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999999986

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.07  E-value=0.0058  Score=51.85  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999999998543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0057  Score=52.51  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999863

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0056  Score=53.65  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999864

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.07  E-value=0.0055  Score=54.16  Aligned_cols=26  Identities=12%  Similarity=0.215  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998644

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0055  Score=55.59  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+++.|+..+
T Consensus        32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         32 EGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999999998754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.07  E-value=0.0058  Score=52.43  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999998643

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.07  E-value=0.0087  Score=58.93  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=24.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      ..++|.|++|+||||+|+.||+.+++.
T Consensus        36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952         36 HAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            457899999999999999999999874

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.06  E-value=0.0057  Score=53.41  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999999854

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=96.05  E-value=0.0058  Score=52.85  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   52 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGI   52 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.04  E-value=0.0088  Score=46.72  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=25.4

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS  126 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~  126 (212)
                      |++.|.+|+||||++..+|..+   |.  ..+|+|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            7899999999999999998766   54  4467764

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.04  E-value=0.0061  Score=53.27  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999999999754

>PHA02624 large T antigen; Provisional

Probab=96.04  E-value=0.0086  Score=59.40  Aligned_cols=37  Identities=22%  Similarity=0.046  Sum_probs=30.3

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ++..+++.++|.||||+||||+++.|++.+|-..++.
T Consensus       426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            3445568999999999999999999999995555554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.03  E-value=0.006  Score=53.43  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998644

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.03  E-value=0.0059  Score=53.51  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   56 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGF   56 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999854

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.03  E-value=0.0061  Score=50.82  Aligned_cols=26  Identities=27%  Similarity=0.200  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.||..+
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998755

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.03  E-value=0.0056  Score=52.16  Aligned_cols=25  Identities=40%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (237)
T PRK11614         30 QGEIVTLIGANGAGKTTLLGTLCGD   54 (237)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999999853

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.03  E-value=0.0079  Score=52.82  Aligned_cols=37  Identities=8%  Similarity=0.061  Sum_probs=29.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD  125 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D  125 (212)
                      +..++..++|.|+||+|||+++-.+|...     .+.|++.+
T Consensus        32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            66678999999999999999999886532     34566654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
3nwj_A	250	Crystal Structure Of Shikimate Kinase From Arabidop		7e-15
3trf_A	185	Structure Of A Shikimate Kinase (Arok) From Coxiell		2e-06
1kag_A	173	Crystal Structure Of The Escherichia Coli Shikimate		2e-05
1shk_A	173	The Three-dimensional Structure Of Shikimate Kinase		6e-04

>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis Thaliana (Atsk2) Length = 250

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +KKKA ++   L G S++LVGM  + KT +GK +A +L Y +FD D+L+ +A  G S A+
Sbjct: 35  LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 94
Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLYEISGTFKTW 191
            F    E  +++ ETE LK+LS M  ++VV  G GAV    N   +      W
Sbjct: 95  IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIW 147

>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella Burnetii Length = 185

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 94  TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
           T+++L+G+  A KT +G  LA   +   +DSD  + E   G   A  F    E G+++ E
Sbjct: 6   TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI-EKRTGADIAWIFEMEGEAGFRRRE 64
Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGT 187
            E+++ L  +  +++  G G V    N  +IS T
Sbjct: 65  REMIEALCKLDNIILATGGGVVLDEKNRQQISET 98

>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase I (Arok) Length = 173

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++FLVG   A K+ +G+ LA  L   ++DSD  + E   G      F    E+G++  E 
Sbjct: 6   NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI-EKRTGADVGWVFDLEGEEGFRDREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQS 177
           +V+ +L+    +V+  G G+V+S
Sbjct: 65  KVINELTEKQGIVLATGGGSVKS 87

>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From Erwinia Chrysanthemi Length = 173

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +F+VG     KT +G+ LA AL Y + D+D +  +   G + A         G+++ E+E
Sbjct: 5   IFMVGARGCGKTTVGRELARALGYEFVDTD-IFMQHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN 180
            L+ +++  R VV  G G V    N
Sbjct: 64  ALQAVATPNR-VVATGGGMVLLEQN 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	1e-29
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	1e-11
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	1e-11
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	5e-11
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	2e-10
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	3e-10
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	5e-10
1via_A	175	Shikimate kinase; structural genomics, transferase	1e-08
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Length = 250

 Score =  109 bits (274), Expect = 1e-29
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 50  RKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHL 109
           R   ++ ++ +    + ++     ++    +KKKA ++   L G S++LVGM  + KT +
Sbjct: 5   RLRSVSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64

Query: 110 GKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM-GRLVV 168
           GK +A +L Y +FD D+L+ +A  G S A+ F    E  +++ ETE LK+LS M  ++VV
Sbjct: 65  GKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVV 124

Query: 169 CAGNGAVQSSAN 180
             G GAV    N
Sbjct: 125 STGGGAVIRPIN 136

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Length = 184

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
              LVG+  + K+ +G+ LA AL     D+D  + E   G S A  F    E+ +++ E 
Sbjct: 4   KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAI-EQRTGRSIADIFATDGEQEFRRIEE 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
           +V++   +    V+  G GAV S   
Sbjct: 63  DVVRAALADHDGVLSLGGGAVTSPGV 88

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Length = 185

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           +++L+G+  A KT +G  LA   +   +DSD  + E   G   A  F    E G+++ E 
Sbjct: 7   NIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI-EKRTGADIAWIFEMEGEAGFRRRER 65

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
           E+++ L  +  +++  G G V    N
Sbjct: 66  EMIEALCKLDNIILATGGGVVLDEKN 91

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Length = 173

 Score = 58.3 bits (142), Expect = 5e-11
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++FLVG   A K+ +G+ LA  L   ++DSD  + E   G      F    E+G++  E 
Sbjct: 6   NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI-EKRTGADVGWVFDLEGEEGFRDREE 64

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
           +V+ +L+    +V+  G G+V+S   
Sbjct: 65  KVINELTEKQGIVLATGGGSVKSRET 90

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
            +F+VG      T +G+ LA AL Y + D+D  + +   G + A         G+++ E+
Sbjct: 4   PIFMVGARGCGMTTVGRELARALGYEFVDTDIFM-QHTSGMTVADVVAAEGWPGFRRRES 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN 180
           E L+ +++    VV  G G V    N
Sbjct: 63  EALQAVAT-PNRVVATGGGMVLLEQN 87

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Length = 199

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FL G   A KT LGK  A  L   + D D  + E    ++  + F E  E G+++ E  
Sbjct: 28  IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYI-EERFHKTVGELFTERGEAGFRELERN 86

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN 180
           +L +++    +V+  G GA     N
Sbjct: 87  MLHEVAEFENVVISTGGGAPCFYDN 111

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Length = 168

 Score = 55.2 bits (134), Expect = 5e-10
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           ++L+G   + K+ +G  L+ +L   ++D D  V +   G S  + F +  E  +++ E E
Sbjct: 3   IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFE 61

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSAN 180
           VLK LS    +V+  G G   +   
Sbjct: 62  VLKDLSEKENVVISTGGGLGANEEA 86

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Length = 175

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++  +G   + K+ L + LA  L   + DSD L+ E    +  ++ F +  E  +++ E 
Sbjct: 6   NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLI-EQKFNQKVSEIFEQKRENFFREQEQ 64

Query: 155 EVLKQLSSMGRLVVCAGNGAV 175
           ++    SS  +  +  G G V
Sbjct: 65  KMADFFSSCEKACIATGGGFV 85

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Length = 168

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
            + L+G   + K+ L + L  AL+    D+D ++     G S  + F E  E  ++  E 
Sbjct: 9   HLVLIGFMGSGKSSLAQELGLALKLEVLDTDMII-SERVGLSVREIFEELGEDNFRMFEK 67

Query: 155 EVLKQLSSMGRLVVCA-GNGAV 175
            ++ +L ++    V + G G V
Sbjct: 68  NLIDELKTLKTPHVISTGGGIV 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 57/156 (36%)

Query: 22  LKFDPPFSLLHSQSYAP------IRTSLQYSIISRK-PR--------------------- 53
            + DP ++     S         I+  L+  + S+                         
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 54  ---ITTR--SIADDTTSNTVTKVAAEDPS-----------FA--VKKKAADISTELKGTS 95
              +TTR   + D  ++ T T ++ +  S               +  +  D+  E+  T+
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 96  VFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSL 127
              + +       + + + D L     + + + D L
Sbjct: 327 PRRLSI-------IAESIRDGLATWDNWKHVNCDKL 355

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 50/191 (26%)

Query: 31  LHSQSYAPIRTSLQYSIISRKPRITTRSIAD--DTTSNTV---TK--VAAEDPSFAVKKK 83
           +   +Y  + + ++     R+P + TR   +  D   N      K  V+   P   +++ 
Sbjct: 86  VLRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 84  AADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAA 138
                 EL+   +V + G+  + KT +     D            V      +    +  
Sbjct: 144 L----LELRPAKNVLIDGVLGSGKTWV---ALDVCL------SYKVQCKMDFKIFWLNL- 189

Query: 139 KAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL--------YEISGTFKT 190
                        +   VL+ L  +   +          S+N+         E+    K+
Sbjct: 190 ---------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 191 WN-----IIMD 196
                  +++ 
Sbjct: 241 KPYENCLLVLL 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.87
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.86
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.81
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.8
1via_A	175	Shikimate kinase; structural genomics, transferase	99.79
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.77
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.77
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.75
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.47
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.46
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.43
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.43
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.42
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.41
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.39
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.38
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.36
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.36
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.35
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.34
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.32
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.32
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.3
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.29
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.29
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.29
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.28
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.28
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.28
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.26
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.25
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.19
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.18
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.17
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.16
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.15
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.15
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.13
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.13
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.13
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.12
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.09
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.09
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.08
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.07
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.07
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.06
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.05
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.04
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.04
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.04
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.04
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.02
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.02
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.02
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.01
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.01
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.0
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.99
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.98
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.96
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.95
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.93
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.92
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.91
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.9
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.88
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.87
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.83
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.82
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.81
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.8
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.77
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.74
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.72
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.7
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.68
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.68
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.63
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.61
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.56
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.55
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.39
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.37
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.33
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.25
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.19
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.15
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.14
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.11
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.1
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.07
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.06
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.06
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.03
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.99
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.98
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.94
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.94
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.94
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.92
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.88
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.88
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.88
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.88
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.87
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.87
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.85
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.84
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.84
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.83
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.79
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.79
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.76
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.75
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.74
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.74
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.73
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.71
3bos_A	242	Putative DNA replication factor; P-loop containing	97.69
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.68
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.68
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.66
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.65
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.64
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.64
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.61
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.6
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.57
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.57
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.57
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.57
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.56
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.55
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.54
3co5_A	143	Putative two-component system transcriptional RES	97.53
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.52
3pvs_A	447	Replication-associated recombination protein A; ma	97.51
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.5
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.5
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.49
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.47
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.46
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.44
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.42
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.41
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.41
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.4
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.4
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.33
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.32
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.31
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.3
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.29
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.29
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.26
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.25
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.25
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.24
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.23
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.23
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.22
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.22
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.2
2qgz_A	308	Helicase loader, putative primosome component; str	97.2
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.19
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.19
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.19
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.18
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.15
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.1
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.09
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.09
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.08
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.07
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.04
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.03
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.02
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.02
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.01
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.98
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.93
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.92
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.92
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.9
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.88
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.87
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.82
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.8
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.79
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.78
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.77
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.76
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.76
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.75
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.74
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.74
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.74
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.72
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.7
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.7
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.7
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.69
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.69
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.65
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.62
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.59
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.58
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.58
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.58
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.52
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.51
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.51
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.51
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.51
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.5
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.5
1g6h_A	257	High-affinity branched-chain amino acid transport	96.49
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.49
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.47
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.47
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.47
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.46
2fna_A	357	Conserved hypothetical protein; structural genomic	96.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.45
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.45
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.44
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.43
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.42
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.42
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.41
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.41
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.41
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.4
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.38
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.38
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.36
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.35
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.35
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.35
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.35
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.33
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.3
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.3
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.26
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.26
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.22
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.21
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.21
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.19
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.19
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.18
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.17
2og2_A	359	Putative signal recognition particle receptor; nuc	96.16
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.15
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.12
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.11
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.09
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.09
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.09
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.07
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.06
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.03
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.02
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.01
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.01
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.0
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.99
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.99
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.98
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.98
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.97
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.92
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.9
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.9
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.89
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.86
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.85
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.84
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.82
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.81
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.8
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.8
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.79
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.73
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.72
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.71
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.7
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.7
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.63
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.63
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.62
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.6
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.59
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.56
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.55
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.55
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.49
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.48
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.47
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.45
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.44
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.44
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.44
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.43
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.43
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.43
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.42
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.41
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.4
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.4
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.37
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.36
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.36
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.36
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.35
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.35
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.35
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.34
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.33
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.31
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.29
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.29
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.27
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.27
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.27
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.26
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.26
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.24
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.23
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.23
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.21
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.19
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.19
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.18
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.17
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.17
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.14
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.11
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.11
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.11
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.1
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.1
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.09
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.09
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.08
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.08
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.04
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.02
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.02
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.02
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.99
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.89
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.89
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.87
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.86
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.83
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.82
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.82
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.8
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.8
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.8
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.76
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.76
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.76
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.75
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.73
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.72
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.7
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.7
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	94.69
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	94.69
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.68
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.68
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.68
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.68
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.67
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.67
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.67
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.65
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.63
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.62
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.61
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.57
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.55
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.54
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	94.53
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.53
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.51
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.5
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.49
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.42
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.42
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.42
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.4
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.4
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.39
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.39
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.36
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.33
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.32
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.31
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.3
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.3
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.29
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.28
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.25
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.24
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.23
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.23
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	94.21
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.21
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.18
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.17
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.17
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.1
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.1
2xxa_A	433	Signal recognition particle protein; protein trans	94.1
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.08
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.06
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.04
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.03
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.0
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.99
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.96
3ice_A	422	Transcription termination factor RHO; transcriptio	93.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	93.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	93.92
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.88
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.85
3end_A	307	Light-independent protochlorophyllide reductase ir	93.82
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.75
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.72
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.71
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.66
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	93.6
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	93.58
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	93.58
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	93.56
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.55
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.52
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	93.4
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.39
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	93.39
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.37
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.31
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.31
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	93.29
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.29
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.26

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.87  E-value=4.9e-22  Score=172.16  Aligned_cols=124  Identities=36%  Similarity=0.524  Sum_probs=112.5

Q ss_pred             chHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CCCchhhhhhhhchHHHHHHHHH
Q 028227           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQQAETE  155 (212)
Q Consensus        77 ~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~~si~ei~~~~Ge~~fr~~E~~  155 (212)
                      ...|++...++...+++..|+|+|++||||||+++.||+.+|++|+|+|.++++.. | .++.++++..|+..|++.|.+
T Consensus        32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~~i~~i~~~~ge~~fr~~e~~  110 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-TSVAEIFEHFGESVFREKETE  110 (250)
T ss_dssp             CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-SCHHHHHHHHCHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-ccHHHHHHHhCcHHHHHHHHH
Confidence            45788888888888889999999999999999999999999999999999999988 6 899999999999999999999


Q ss_pred             HHHHHhcC-CCEEEEeCCceeechhhHHhccCCeEEEEEechh-hhhc
Q 028227          156 VLKQLSSM-GRLVVCAGNGAVQSSANLYEISGTFKTWNIIMDR-RSSR  201 (212)
Q Consensus       156 vL~~L~~~-~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~~~~-~v~R  201 (212)
                      ++.++... .++||++|||++..+.++++++.+++|||+++.+ +++|
T Consensus       111 ~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~R  158 (250)
T 3nwj_A          111 ALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHR  158 (250)
T ss_dssp             HHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHH
T ss_pred             HHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHH
Confidence            99999876 7899999999999999999999899999999764 3344

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.86  E-value=1.7e-21  Score=156.24  Aligned_cols=109  Identities=24%  Similarity=0.371  Sum_probs=98.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg  172 (212)
                      +..|+|+|++||||||+|+.||+.+|++|+|+|.++++..| .++.+++...|+..|+..|.+++..+....++||++|+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg   83 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG   83 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence            56899999999999999999999999999999999999988 78889999999999999999999999887889999999


Q ss_pred             ceeechhhHHhcc-CCeEEEEEechhhhhcc
Q 028227          173 GAVQSSANLYEIS-GTFKTWNIIMDRRSSRH  202 (212)
Q Consensus       173 G~V~~~~~~~~L~-~g~vV~Ld~~~~~v~R~  202 (212)
                      |++++..+++.++ .+++|||+++.+.+.++
T Consensus        84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~R  114 (185)
T 3trf_A           84 GVVLDEKNRQQISETGVVIYLTASIDTQLKR  114 (185)
T ss_dssp             TGGGSHHHHHHHHHHEEEEEEECCHHHHHHH
T ss_pred             ceecCHHHHHHHHhCCcEEEEECCHHHHHHH
Confidence            9999999999887 68999999986543333

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=3.4e-21  Score=157.98  Aligned_cols=105  Identities=24%  Similarity=0.322  Sum_probs=97.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      +++.|+|+|++||||||+++.||+.+|++|+|.|+++++..| .++.+++.+.|+..|++.|.++++.+....++||++|
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g  102 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG  102 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence            367999999999999999999999999999999999999888 7899999999999999999999999988888999999


Q ss_pred             CceeechhhHHhcc-CCeEEEEEechh
Q 028227          172 NGAVQSSANLYEIS-GTFKTWNIIMDR  197 (212)
Q Consensus       172 gG~V~~~~~~~~L~-~g~vV~Ld~~~~  197 (212)
                      +|.+....+++.++ .+.+|||+++.+
T Consensus       103 gg~~~~~~~~~~l~~~~~vi~L~~~~e  129 (199)
T 3vaa_A          103 GGAPCFYDNMEFMNRTGKTVFLNVHPD  129 (199)
T ss_dssp             TTGGGSTTHHHHHHHHSEEEEEECCHH
T ss_pred             CcEEccHHHHHHHHcCCEEEEEECCHH
Confidence            99999999888886 799999999764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.81  E-value=1.7e-19  Score=144.70  Aligned_cols=110  Identities=25%  Similarity=0.343  Sum_probs=95.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ..|+|+|+|||||||+|+.||+.+|++++|+|.++++..| .++.+++.+.|+..|++.+.++++.+....++|+++|+|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~   81 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG   81 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCc
Confidence            4699999999999999999999999999999999998888 677788888899999999989898887767789999988


Q ss_pred             eeechhhHHhccCCeEEEEEechh-hhhcccC
Q 028227          174 AVQSSANLYEISGTFKTWNIIMDR-RSSRHGS  204 (212)
Q Consensus       174 ~V~~~~~~~~L~~g~vV~Ld~~~~-~v~R~~~  204 (212)
                      +++++.+++.++.+.+|||+++.+ +++|...
T Consensus        82 ~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~  113 (184)
T 2iyv_A           82 AVTSPGVRAALAGHTVVYLEISAAEGVRRTGG  113 (184)
T ss_dssp             GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTC
T ss_pred             EEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence            888888888777789999999864 4455433

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.80  E-value=3.1e-19  Score=141.59  Aligned_cols=105  Identities=22%  Similarity=0.299  Sum_probs=90.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE-EEEeCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCAGN  172 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~-VVa~Gg  172 (212)
                      ++|+|+|++||||||+|+.||+.+|++|+|+|.++++..| .++.+++...|+..|++.+.+++..+.....+ |+++|+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~   86 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG   86 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            7899999999999999999999999999999999999888 78889998899999999999999998866778 999888


Q ss_pred             ceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227          173 GAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG  203 (212)
Q Consensus       173 G~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~  203 (212)
                      |++.. .+   |+ .+.+|||+++.+ +++|..
T Consensus        87 g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~  115 (168)
T 1zuh_A           87 GIVMH-EN---LKGLGTTFYLKMDFETLIKRLN  115 (168)
T ss_dssp             GGGGC-GG---GTTSEEEEEEECCHHHHHHHHC
T ss_pred             CEech-hH---HhcCCEEEEEECCHHHHHHHHh
Confidence            88776 44   55 679999999864 555543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.79  E-value=8.7e-19  Score=140.12  Aligned_cols=105  Identities=20%  Similarity=0.318  Sum_probs=90.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ++|+|+|+|||||||+|+.||+.+|++|+|.|.++++..| .++.+++.+.|+..|++.|.++++.+....++||++|+|
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~   83 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   83 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence            3699999999999999999999999999999999998888 778888888899999999999999988778899999988


Q ss_pred             eeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG  203 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~  203 (212)
                      ++.+ .+   |+ .+.+|||+++.+ +++|..
T Consensus        84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~  111 (175)
T 1via_A           84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLD  111 (175)
T ss_dssp             GGGS-TT---GGGGCEEEEEECCHHHHTTCCC
T ss_pred             Eehh-hH---HhcCCEEEEEeCCHHHHHHHHh
Confidence            8876 44   54 689999999764 444443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.77  E-value=2.6e-18  Score=135.43  Aligned_cols=109  Identities=24%  Similarity=0.322  Sum_probs=93.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      .|+|+|++||||||+++.|++.+|++++|+|.+.++..| ..+.+++...|+..|+..+.+++..+...+.+||++|+|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~   80 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGL   80 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCE
Confidence            689999999999999999999999999999999998888 7788888888999999888899988876678999988777


Q ss_pred             eechhhHHhcc-CCeEEEEEechh-hhhcccC
Q 028227          175 VQSSANLYEIS-GTFKTWNIIMDR-RSSRHGS  204 (212)
Q Consensus       175 V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~~  204 (212)
                      ...+.+++.++ .+.+|||+++.+ +++|...
T Consensus        81 ~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~  112 (168)
T 2pt5_A           81 GANEEALNFMKSRGTTVFIDIPFEVFLERCKD  112 (168)
T ss_dssp             HTCHHHHHHHHTTSEEEEEECCHHHHHHHCBC
T ss_pred             eCCHHHHHHHHcCCEEEEEECCHHHHHHHHhC
Confidence            77777777776 689999999864 4555443

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.77  E-value=1.8e-18  Score=136.67  Aligned_cols=107  Identities=23%  Similarity=0.323  Sum_probs=92.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ..|+|+|++||||||+|+.||+.+|++++|.|.++++..| .++.+++...|+..|++.+.+++..+. ...+||++|+|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~   80 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG   80 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence            4699999999999999999999999999999999998877 677888887888999999888998887 67799999988


Q ss_pred             eeechhhHHhcc-CCeEEEEEechh-hhhcc
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIMDR-RSSRH  202 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~  202 (212)
                      .++.+.+++.++ .+.+|||+++.+ +++|.
T Consensus        81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~  111 (173)
T 1e6c_A           81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRL  111 (173)
T ss_dssp             GGGSHHHHHHHHHHSEEEEEECCHHHHHHHH
T ss_pred             EEeCHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence            888888888776 689999999754 34443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.75  E-value=5.2e-18  Score=134.30  Aligned_cols=110  Identities=25%  Similarity=0.392  Sum_probs=94.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg  172 (212)
                      +..|+|+|++||||||+++.||..++++++|+|.++++..| ..+..+++..|+..|+..|..++..+....++|+++|+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~   82 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG   82 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence            56899999999999999999999999999999999988777 67888888889999999888889988877889999888


Q ss_pred             ceeechhhHHhcc-CCeEEEEEechh-hhhccc
Q 028227          173 GAVQSSANLYEIS-GTFKTWNIIMDR-RSSRHG  203 (212)
Q Consensus       173 G~V~~~~~~~~L~-~g~vV~Ld~~~~-~v~R~~  203 (212)
                      |.+....++++++ .+.+|||+++.+ ..+|..
T Consensus        83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~  115 (173)
T 1kag_A           83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQ  115 (173)
T ss_dssp             TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC-
T ss_pred             eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHh
Confidence            8888888888777 689999999764 444443

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.47  E-value=4.3e-13  Score=106.46  Aligned_cols=105  Identities=14%  Similarity=0.068  Sum_probs=72.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH-----H-HhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~-----~-~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      .++..|+|+|++||||||+++.|+..+|+.++|.|.+.+     + ..| ..+.+   ..++.+|+..+..+...+....
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~   81 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDAAFAMQRTNK   81 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCCc---cccccHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999999742     2 234 33221   2345666766654443333345


Q ss_pred             CEEEEeCCceeechhhHHhcc-C--C-eEEEEEechh-hhhcc
Q 028227          165 RLVVCAGNGAVQSSANLYEIS-G--T-FKTWNIIMDR-RSSRH  202 (212)
Q Consensus       165 ~~VVa~GgG~V~~~~~~~~L~-~--g-~vV~Ld~~~~-~v~R~  202 (212)
                      .+||++|.   ....+++.++ .  + .+|||+++.+ .++|.
T Consensus        82 ~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~  121 (175)
T 1knq_A           82 VSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRL  121 (175)
T ss_dssp             EEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHH
T ss_pred             cEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHH
Confidence            67777754   3456677775 3  3 7999999864 33443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.46  E-value=1.3e-13  Score=114.65  Aligned_cols=106  Identities=14%  Similarity=0.140  Sum_probs=66.8

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhchHH--HH---------------
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ---------------  150 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge~~--fr---------------  150 (212)
                      .++...|.|.|++||||||+|+.||++||++|+| ++++++...  +.+. +.+...++..  |+               
T Consensus         3 ~m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   80 (201)
T 3fdi_A            3 AMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQ   80 (201)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------C
T ss_pred             CCCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccH
Confidence            3456789999999999999999999999999999 666654432  1442 4566666654  33               


Q ss_pred             ---HHHHHHHHHHh--cCCCEEEEeCC-ceeechhhHHhccCCeEEEEEech-hhhhcc
Q 028227          151 ---QAETEVLKQLS--SMGRLVVCAGN-GAVQSSANLYEISGTFKTWNIIMD-RRSSRH  202 (212)
Q Consensus       151 ---~~E~~vL~~L~--~~~~~VVa~Gg-G~V~~~~~~~~L~~g~vV~Ld~~~-~~v~R~  202 (212)
                         +.|.++++++.  ..+++|+...+ ++|+. .+    .+++.|||+++. .+++|.
T Consensus        81 ~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~-~~----~~~~~V~L~A~~e~r~~R~  134 (201)
T 3fdi_A           81 DIAIRQFNFIRKKANEEKESFVIVGRCAEEILS-DN----PNMISAFILGDKDTKTKRV  134 (201)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEESTTHHHHTT-TC----TTEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEECCcchhcC-CC----CCeEEEEEECCHHHHHHHH
Confidence               57889999998  77888887533 33332 11    257999999975 455554

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.43  E-value=2.9e-13  Score=112.50  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=68.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CC----CchhhhhhhhchHHHHHHHHH-HHHHHhc--C
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETE-VLKQLSS--M  163 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~----~si~ei~~~~Ge~~fr~~E~~-vL~~L~~--~  163 (212)
                      ++..|+|+|+|||||||+++.||+.+|++++|+|++++... ++    ..+.+++.. |+..+++.+.. +...+..  .
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence            35789999999999999999999999999999999887654 11    233344432 44344444333 3344442  4


Q ss_pred             CCEEEEeCCceeechhhHHhc-cCCeEEEEEechh
Q 028227          164 GRLVVCAGNGAVQSSANLYEI-SGTFKTWNIIMDR  197 (212)
Q Consensus       164 ~~~VVa~GgG~V~~~~~~~~L-~~g~vV~Ld~~~~  197 (212)
                      ..+|+...++.+....++..+ ..+.+|||+++.+
T Consensus        85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~  119 (227)
T 1zd8_A           85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFE  119 (227)
T ss_dssp             SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHH
T ss_pred             CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHH
Confidence            567776544444333334333 3689999999754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.43  E-value=3.1e-13  Score=107.10  Aligned_cols=107  Identities=13%  Similarity=-0.009  Sum_probs=66.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHhCC-------CchhhhhhhhchHHHHHHHHHH---HHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG-------ESAAKAFRESDEKGYQQAETEV---LKQ  159 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~~~G~-------~si~ei~~~~Ge~~fr~~E~~v---L~~  159 (212)
                      .+..|+|+|+|||||||+|+.||+.++.+|++  .|.+++...+.       .++.+.+...++..|+..+..+   ++.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            46789999999999999999999999988775  88887754331       0111112223456777666543   455


Q ss_pred             HhcCCC-EEEEeCC--ceeechhhHHhcc-CC-eEEEEEechhh
Q 028227          160 LSSMGR-LVVCAGN--GAVQSSANLYEIS-GT-FKTWNIIMDRR  198 (212)
Q Consensus       160 L~~~~~-~VVa~Gg--G~V~~~~~~~~L~-~g-~vV~Ld~~~~~  198 (212)
                      +...+. +|+++--  +......+++.++ ++ ++|||+++.+.
T Consensus        82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~  125 (178)
T 1qhx_A           82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAV  125 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHH
T ss_pred             HHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHH
Confidence            554444 4554311  1111234555665 44 57889987543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.42  E-value=3.6e-13  Score=104.39  Aligned_cols=108  Identities=19%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC-----Cc----hhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ES----AAKAFRESDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~-----~s----i~ei~~~~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      ..|+|+|+|||||||+++.| +.+|+++++.|+++++....     ..    ..+++...|+..+++...+.++.  ..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence            47999999999999999999 99999999999998876430     01    12233334556665544444421  234


Q ss_pred             CEEEEeCCceeechhhHHhcc-----CCeEEEEEechh-hhhcccCCCC
Q 028227          165 RLVVCAGNGAVQSSANLYEIS-----GTFKTWNIIMDR-RSSRHGSKNG  207 (212)
Q Consensus       165 ~~VVa~GgG~V~~~~~~~~L~-----~g~vV~Ld~~~~-~v~R~~~~~~  207 (212)
                      ..||..|  . ....+++.++     ...+|||+++.+ +.+|...+++
T Consensus        79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  124 (179)
T 3lw7_A           79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLR  124 (179)
T ss_dssp             SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-
T ss_pred             CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccC
Confidence            5566665  3 5555556554     237999999764 4455544444

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.41  E-value=1.6e-13  Score=113.67  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH------hCCCchhhhhhhhchHHHHHHHHHHHHHHhc---
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSS---  162 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~------~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~---  162 (212)
                      ++..|+|+|+|||||||+|+.||+.+|++++++|+++++.      .| ..+.+++.. |+..+++.+.+++.....   
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~   81 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDLGV   81 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccc
Confidence            4578999999999999999999999999999999999865      23 445555543 554556666566554332   


Q ss_pred             -CCCEEEEeCCceeec---hhhHH-hcc-----CCeEEEEEechh
Q 028227          163 -MGRLVVCAGNGAVQS---SANLY-EIS-----GTFKTWNIIMDR  197 (212)
Q Consensus       163 -~~~~VVa~GgG~V~~---~~~~~-~L~-----~g~vV~Ld~~~~  197 (212)
                       ...+|+. |  ....   ...+. ++.     -+.+|||+++.+
T Consensus        82 ~~~~~i~d-g--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e  123 (217)
T 3be4_A           82 CVNGFVLD-G--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDS  123 (217)
T ss_dssp             TTTCEEEE-S--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHH
T ss_pred             cCCCEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence             2334443 2  1111   11222 221     358999999754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.39  E-value=9.7e-14  Score=112.30  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=37.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH-hCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~-lg~~~~d~D~l~~~~  131 (212)
                      ++..|+|+|+|||||||+|+.||+. +|++|+|+|+++++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~   49 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN   49 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence            4678999999999999999999999 799999999998874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.38  E-value=3.4e-12  Score=101.33  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHh---CC-CchhhhhhhhchHHHHHHHHHH---HHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA---GG-ESAAKAFRESDEKGYQQAETEV---LKQ  159 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~---G~-~si~ei~~~~Ge~~fr~~E~~v---L~~  159 (212)
                      ++..|+|+|+|||||||+++.||+.++     +++++.|+++.+..   |. .+..++.. .....++..+..+   +..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~   80 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE   80 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999     99999998876543   21 13333322 1122333333322   333


Q ss_pred             HhcCCCEEEEeCCceeechhhH------Hhc---cCCeEEEEEechhhh
Q 028227          160 LSSMGRLVVCAGNGAVQSSANL------YEI---SGTFKTWNIIMDRRS  199 (212)
Q Consensus       160 L~~~~~~VVa~GgG~V~~~~~~------~~L---~~g~vV~Ld~~~~~v  199 (212)
                      +...+.+| .+|.+.+.....+      ..+   ..+++|||+++.+.+
T Consensus        81 ~~~~~~vi-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  128 (192)
T 1kht_A           81 MAKESPVA-VDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEI  128 (192)
T ss_dssp             HHTTSCEE-EECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHH
T ss_pred             hccCCeEE-EccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHH
Confidence            44344444 4566554322211      222   357899999986544

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.36  E-value=6.8e-13  Score=105.84  Aligned_cols=101  Identities=16%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCC----CchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~----~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|+|||||||+++.||+.+|++++|+|+++++. .++    ..+.+++.. |+..+++.+.+.+...... ++
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-~~   80 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-RV   80 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS-EE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC-CE
Confidence            4678999999999999999999999999999999988765 221    234444543 5555566666666665543 34


Q ss_pred             EEEeCCceeechhhHH----hcc-----CCeEEEEEechh
Q 028227          167 VVCAGNGAVQSSANLY----EIS-----GTFKTWNIIMDR  197 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~----~L~-----~g~vV~Ld~~~~  197 (212)
                      |+ .|  .+....+..    ++.     .+.+|||+++.+
T Consensus        81 i~-dg--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e  117 (186)
T 3cm0_A           81 IF-DG--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEE  117 (186)
T ss_dssp             EE-ES--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHH
T ss_pred             EE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence            44 33  233222222    232     357999999753

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.36  E-value=8.6e-13  Score=112.26  Aligned_cols=105  Identities=18%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH--hCCCchhhhhhhhchH-----------------------
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK-----------------------  147 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~--~G~~si~ei~~~~Ge~-----------------------  147 (212)
                      ...|.|.|++||||||+|+.||+++|++|+|.|.+.+..  .| .+. +.+.+.++.                       
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence            468999999999999999999999999999977655433  23 332 233333332                       


Q ss_pred             --------HHHHHHHHHHHHHhcCCCEEEE-eCCceeec--hhhHHhccCCeEEEEEech-hhhhccc
Q 028227          148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLYEISGTFKTWNIIMD-RRSSRHG  203 (212)
Q Consensus       148 --------~fr~~E~~vL~~L~~~~~~VVa-~GgG~V~~--~~~~~~L~~g~vV~Ld~~~-~~v~R~~  203 (212)
                              .+...+.+++++++..+++||+ +|||+|++  +.+    .++++|||+++. .+++|..
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~  155 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVM  155 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHH
Confidence                    1124566788889877889887 77777663  222    357999999975 4555543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.35  E-value=8.3e-13  Score=107.41  Aligned_cols=105  Identities=13%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCCC----chhhhhhhhchHHHHHHHHHHHHHHhc-
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGGE----SAAKAFRESDEKGYQQAETEVLKQLSS-  162 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~~----si~ei~~~~Ge~~fr~~E~~vL~~L~~-  162 (212)
                      ...++..|+|+|+|||||||+|+.||+.+|++++|+|+++++. .++.    .+.+++. .|+..+++.+..++..... 
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~   94 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNN   94 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhc
Confidence            3445789999999999999999999999999999999998763 2212    2333332 2444445555555554332 


Q ss_pred             ---CCCEEEEeCCceeechhhH----Hhcc-----CCeEEEEEechh
Q 028227          163 ---MGRLVVCAGNGAVQSSANL----YEIS-----GTFKTWNIIMDR  197 (212)
Q Consensus       163 ---~~~~VVa~GgG~V~~~~~~----~~L~-----~g~vV~Ld~~~~  197 (212)
                         .+.+|+. |.  .......    .++.     .+.+|||+++.+
T Consensus        95 ~~~~~~vIld-g~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e  138 (201)
T 2cdn_A           95 PDAANGFILD-GY--PRSVEQAKALHEMLERRGTDIDAVLEFRVSEE  138 (201)
T ss_dssp             GGGTTCEEEE-SC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred             ccCCCeEEEE-CC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence               2334443 21  1111111    2232     368999999754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.34  E-value=1.6e-11  Score=100.21  Aligned_cols=104  Identities=10%  Similarity=-0.028  Sum_probs=72.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH-----H-HhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~-----~-~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~  165 (212)
                      ++..|+|+|++||||||+++.|+..+|+.++|.|.+..     . ..| ....+   ......++..+..++..+.....
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~g~~  103 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRG-IPLTD---EDRWPWLRSLAEWMDARADAGVS  103 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcC-CCCCC---cccccHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999999999998742     1 223 22211   22344566666666666665566


Q ss_pred             EEEEeCCceeechhhHHhccC----CeEEEEEechh-hhhcc
Q 028227          166 LVVCAGNGAVQSSANLYEISG----TFKTWNIIMDR-RSSRH  202 (212)
Q Consensus       166 ~VVa~GgG~V~~~~~~~~L~~----g~vV~Ld~~~~-~v~R~  202 (212)
                      +|++++.   ....+++.++.    ..+|||+++.+ .++|.
T Consensus       104 viid~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl  142 (200)
T 4eun_A          104 TIITCSA---LKRTYRDVLREGPPSVDFLHLDGPAEVIKGRM  142 (200)
T ss_dssp             EEEEECC---CCHHHHHHHTTSSSCCEEEEEECCHHHHHHHH
T ss_pred             EEEEchh---hhHHHHHHHHHhCCceEEEEEeCCHHHHHHHH
Confidence            7887752   45666776653    58999999865 44443

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.32  E-value=3.2e-12  Score=105.65  Aligned_cols=100  Identities=9%  Similarity=0.062  Sum_probs=64.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH------hCCCchhhhhhhhch----HHHHH-HHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDE----KGYQQ-AETEVLKQLS  161 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~------~G~~si~ei~~~~Ge----~~fr~-~E~~vL~~L~  161 (212)
                      +..|+|+|+|||||||+|+.||+.++++++|.|+++++.      .| ..+.+++.. |+    +.+.. .+..+.....
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG-KRAKEFMEK-GQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh-HHHHHHHHc-CCcCCHHHHHHHHHHHHhhccc
Confidence            468999999999999999999999999999999998763      22 334444432 22    12222 3333333223


Q ss_pred             cCCCEEEEeCCceeechhhHHhcc-----CCeEEEEEechh
Q 028227          162 SMGRLVVCAGNGAVQSSANLYEIS-----GTFKTWNIIMDR  197 (212)
Q Consensus       162 ~~~~~VVa~GgG~V~~~~~~~~L~-----~g~vV~Ld~~~~  197 (212)
                      ..+++|+ .|  ......+...|.     .+++|||+++.+
T Consensus        83 ~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~  120 (222)
T 1zak_A           83 QENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDE  120 (222)
T ss_dssp             HHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHH
T ss_pred             cCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHH
Confidence            3456777 44  333333344443     278999999754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.32  E-value=5.6e-12  Score=100.84  Aligned_cols=103  Identities=13%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CC----CchhhhhhhhchHHHHHHHHHHHHH----Hhc
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQ----LSS  162 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~----~si~ei~~~~Ge~~fr~~E~~vL~~----L~~  162 (212)
                      ++..|+|+|+|||||||+|+.||+.+|++++|.|++++... ++    ..+.+++. .|+..+.+.....+..    ...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence            46789999999999999999999999999999999887642 11    23344443 2443333333222222    222


Q ss_pred             CCCEEEEeCCceeechhhHHh----cc-CCeEEEEEechh
Q 028227          163 MGRLVVCAGNGAVQSSANLYE----IS-GTFKTWNIIMDR  197 (212)
Q Consensus       163 ~~~~VVa~GgG~V~~~~~~~~----L~-~g~vV~Ld~~~~  197 (212)
                      .+..||.-|  ........+.    +. .+.+|||+++.+
T Consensus        87 ~~~~vi~d~--~~~~~~~~~~~~~~~~~~~~vi~l~~~~e  124 (196)
T 2c95_A           87 TSKGFLIDG--YPREVQQGEEFERRIGQPTLLLYVDAGPE  124 (196)
T ss_dssp             TCSCEEEES--CCCSHHHHHHHHHHTCCCSEEEEEECCHH
T ss_pred             cCCcEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            233344333  1222222221    23 579999999754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.32  E-value=2.3e-13  Score=108.69  Aligned_cols=40  Identities=30%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ++..|+|+|+|||||||+++.||+.+|++++|.|+++++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~   49 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE   49 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence            4678999999999999999999999999999999998876

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.30  E-value=6.3e-12  Score=98.87  Aligned_cols=102  Identities=7%  Similarity=-0.005  Sum_probs=66.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH-HhCCcEeehhHHHHHHhCCCchh--hhhhhhchHHHHHHHHHHHHHHh---cCCCE
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL  166 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~-~lg~~~~d~D~l~~~~~G~~si~--ei~~~~Ge~~fr~~E~~vL~~L~---~~~~~  166 (212)
                      +..|+|+|+|||||||+++.|++ .+|+.+++.|.+.+...+ .+..  +.+...++..+++...++++...   ..+..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence            35799999999999999999999 699999999998887765 2211  11333455566665556666655   44455


Q ss_pred             EEEeCCceeechhhHHhc----c-CC---eEEEEEechh
Q 028227          167 VVCAGNGAVQSSANLYEI----S-GT---FKTWNIIMDR  197 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~L----~-~g---~vV~Ld~~~~  197 (212)
                      ||..+.  ......++.+    + .+   .+|||+++.+
T Consensus        81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~  117 (181)
T 1ly1_A           81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWT  117 (181)
T ss_dssp             EEECSC--CCSHHHHHHHHHHHHHHTCEEEEEECCCCHH
T ss_pred             EEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHH
Confidence            554332  2222223322    1 22   6899999764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.29  E-value=5.4e-12  Score=100.12  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=63.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CCC----chhhhhhhhchHHHHHHHHHHHHHHhc--CCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSS--MGR  165 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~~----si~ei~~~~Ge~~fr~~E~~vL~~L~~--~~~  165 (212)
                      +..|+|+|++||||||+++.|++.+|++++|.|+++.+.. .+.    .+.+++.. |+..+.+.+..++.....  .+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~   84 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK   84 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999999887653 212    23333332 333334444445544432  233


Q ss_pred             EEEEeCCceeechhhHHhc----c----CCeEEEEEechh
Q 028227          166 LVVCAGNGAVQSSANLYEI----S----GTFKTWNIIMDR  197 (212)
Q Consensus       166 ~VVa~GgG~V~~~~~~~~L----~----~g~vV~Ld~~~~  197 (212)
                      .||..|  .+....+++.+    .    .+.+|||+++.+
T Consensus        85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e  122 (194)
T 1qf9_A           85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEE  122 (194)
T ss_dssp             CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHH
T ss_pred             CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHH
Confidence            444333  33333333322    2    357999999753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.29  E-value=5e-12  Score=104.34  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=63.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-hCC----CchhhhhhhhchHHHHHHHHHHHHHHhc-----
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS-----  162 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~-~G~----~si~ei~~~~Ge~~fr~~E~~vL~~L~~-----  162 (212)
                      +..|+|+|+|||||||+|+.||+.++++++++|+++++. .++    ..+.+++. .|+..+++.+..++.....     
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~   82 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPAC   82 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhcccc
Confidence            578999999999999999999999999999999998864 221    22334443 2443444444455544332     


Q ss_pred             CCCEEEEeCCceeechhhHH----hcc-----CCeEEEEEechh
Q 028227          163 MGRLVVCAGNGAVQSSANLY----EIS-----GTFKTWNIIMDR  197 (212)
Q Consensus       163 ~~~~VVa~GgG~V~~~~~~~----~L~-----~g~vV~Ld~~~~  197 (212)
                      .+.+|+. |  .........    ++.     -+.+|||+++.+
T Consensus        83 ~~~~i~d-g--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e  123 (220)
T 1aky_A           83 KNGFILD-G--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE  123 (220)
T ss_dssp             GSCEEEE-S--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHH
T ss_pred             CCCeEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence            2345543 2  111111111    222     348999999753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.29  E-value=9.1e-13  Score=119.30  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=69.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--------------HHHHhCCC-----chhhh-hhhhchHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ  151 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--------------~~~~~G~~-----si~ei-~~~~Ge~~fr~  151 (212)
                      ++..|+|+||+||||||||..||++++..++|+|.+              .++..| .     ++.++ .+..+...|++
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~  117 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS  117 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence            356899999999999999999999999999999998              344444 2     44555 56778899999


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCceee
Q 028227          152 AETEVLKQLSSMGRLVVCAGNGAVQ  176 (212)
Q Consensus       152 ~E~~vL~~L~~~~~~VVa~GgG~V~  176 (212)
                      .+.++++++...+..+|.+||+.++
T Consensus       118 ~a~~~i~~i~~~g~~pIlvGGtglY  142 (339)
T 3a8t_A          118 LAGKAVSEITGRRKLPVLVGGSNSF  142 (339)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEcCHHHH
Confidence            9999999998888899999886543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.28  E-value=6.5e-12  Score=99.80  Aligned_cols=41  Identities=20%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ++..|+|+|+|||||||+|+.||+.+|++++|.|+++++..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~   42 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER   42 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence            56789999999999999999999999999999999987654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.28  E-value=1.4e-11  Score=98.82  Aligned_cols=102  Identities=10%  Similarity=0.004  Sum_probs=62.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--C---CCchhhhhhhhchHHHHHHHHHH----HHHHhcC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEV----LKQLSSM  163 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G---~~si~ei~~~~Ge~~fr~~E~~v----L~~L~~~  163 (212)
                      +..|+|+|+|||||||+|+.||+.+|++++|.|+++.+..  +   +..+.+++. .|+..+.+.....    +......
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccccc
Confidence            5789999999999999999999999999999999987654  2   022334443 2332222222222    2222222


Q ss_pred             CCEEEEeCCceeechhhHHhc-----cCCeEEEEEechh
Q 028227          164 GRLVVCAGNGAVQSSANLYEI-----SGTFKTWNIIMDR  197 (212)
Q Consensus       164 ~~~VVa~GgG~V~~~~~~~~L-----~~g~vV~Ld~~~~  197 (212)
                      +..||..|  .+....++..+     ..+.+|||+++.+
T Consensus        91 ~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~  127 (199)
T 2bwj_A           91 TRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSAD  127 (199)
T ss_dssp             CSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHH
T ss_pred             CccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            34444433  33333333322     2478999999764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.28  E-value=1.2e-11  Score=102.70  Aligned_cols=58  Identities=12%  Similarity=0.032  Sum_probs=46.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK  147 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~  147 (212)
                      .......|.|+|++||||||+|+.|++.+|++++|+|.+.++.++ ....++++..|+.
T Consensus         8 ~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG~~   65 (192)
T 2grj_A            8 HHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFGGS   65 (192)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHCGG
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhChh
Confidence            344467899999999999999999999999999999999888765 3445555555544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.26  E-value=3.3e-11  Score=96.09  Aligned_cols=42  Identities=21%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G  133 (212)
                      ++..|+|+|+|||||||+++.|++.+|+++++.|.+.+...+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~   45 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD   45 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHH
Confidence            467899999999999999999999999999999999876653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.25  E-value=9.4e-12  Score=104.07  Aligned_cols=102  Identities=14%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--C---CCchhhhhhhhchHHHHHHHHHHHHHHhcC---
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQLSSM---  163 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G---~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~---  163 (212)
                      ++..|+|+|+|||||||+|+.||+.++++++++|+++++..  +   +..+.+++. .|+..+++.+.+++......   
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHHhcccc
Confidence            35789999999999999999999999999999999987742  1   023334442 24333455555555543322   


Q ss_pred             -CCEEEEeCCceeechhhH----Hhc-----cCCeEEEEEechh
Q 028227          164 -GRLVVCAGNGAVQSSANL----YEI-----SGTFKTWNIIMDR  197 (212)
Q Consensus       164 -~~~VVa~GgG~V~~~~~~----~~L-----~~g~vV~Ld~~~~  197 (212)
                       +++|+. |.  .......    +++     ..+.+|||+++.+
T Consensus        94 ~~g~ild-g~--~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e  134 (233)
T 1ak2_A           94 KNGFLLD-GF--PRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS  134 (233)
T ss_dssp             TTCEEEE-SC--CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHH
T ss_pred             cCcEEEe-CC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHH
Confidence             234442 21  1111111    122     2478999999753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.19  E-value=3.5e-11  Score=102.81  Aligned_cols=95  Identities=12%  Similarity=0.007  Sum_probs=67.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH---hCCcEe--ehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEE
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLV  167 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~---lg~~~~--d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~V  167 (212)
                      +..|+|+|+|||||||+|+.|++.   +|++++  |.|.+.+...+       +...++..++..+...++..... ..|
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~v   75 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YWV   75 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CEE
Confidence            468999999999999999999998   899988  99988754332       34456777777777777766555 545


Q ss_pred             EEeCCceeechhhHHhcc--------CCeEEEEEechh
Q 028227          168 VCAGNGAVQSSANLYEIS--------GTFKTWNIIMDR  197 (212)
Q Consensus       168 Va~GgG~V~~~~~~~~L~--------~g~vV~Ld~~~~  197 (212)
                      |..+  ......+++.+.        .+.+|||+++.+
T Consensus        76 IiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e  111 (260)
T 3a4m_A           76 IVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLD  111 (260)
T ss_dssp             EECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHH
T ss_pred             EEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHH
Confidence            5433  233344444332        257999999754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.18  E-value=5.1e-11  Score=98.02  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=35.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|+|+|+|||||||+++.||+.+|++++++|+++++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~   38 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAA   38 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHH
Confidence            6899999999999999999999999999999998874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.18  E-value=5.2e-11  Score=97.37  Aligned_cols=38  Identities=13%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .|+|+|+|||||||+++.||+.+|++++++|+++++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~   39 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAI   39 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHH
Confidence            68999999999999999999999999999999988753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.17  E-value=6.7e-11  Score=98.57  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=35.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .|+|+|+|||||||+++.||+.+|++++++|+++++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~   38 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREH   38 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHH
Confidence            6899999999999999999999999999999998876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.16  E-value=5e-11  Score=96.88  Aligned_cols=98  Identities=14%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCchhhhhhhh-chHHHHHHHHHHHHHHhcCCCEEEEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRES-DEKGYQQAETEVLKQLSSMGRLVVCA  170 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~si~ei~~~~-Ge~~fr~~E~~vL~~L~~~~~~VVa~  170 (212)
                      ...|+|+|++||||||+++.|++.+|+.++|.|.+...... .......+... .+..++..+    ..+.....+|+.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~----~~~~~~~~vivd~   93 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIG----ERLASREPVVVSC   93 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHH----HHHTSSSCCEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHH----HHHhcCCCEEEEC
Confidence            46899999999999999999999999999999998532100 00001112111 222232222    2223344567765


Q ss_pred             CCceeechhhHHhccC-----CeEEEEEechh
Q 028227          171 GNGAVQSSANLYEISG-----TFKTWNIIMDR  197 (212)
Q Consensus       171 GgG~V~~~~~~~~L~~-----g~vV~Ld~~~~  197 (212)
                      +.   .....++.+..     ..+|||+++.+
T Consensus        94 ~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e  122 (202)
T 3t61_A           94 SA---LKRSYRDKLRESAPGGLAFVFLHGSES  122 (202)
T ss_dssp             CC---CSHHHHHHHHHTSTTCCEEEEEECCHH
T ss_pred             CC---CCHHHHHHHHHhcCCCeEEEEEeCCHH
Confidence            43   34455555541     58999999754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.15  E-value=6.5e-11  Score=96.96  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|+|+|+|||||||+++.||+.+|++++++|+++++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~   38 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAA   38 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            6899999999999999999999999999999998875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.15  E-value=2.8e-12  Score=105.15  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=36.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~  130 (212)
                      ++..|.|+|++||||||+++.||+.+|++++|+|.++++
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~   40 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA   40 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence            467899999999999999999999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.13  E-value=1.3e-11  Score=97.80  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=26.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe-ehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~-d~D  125 (212)
                      ++..|+|+|+|||||||+|+.||+.+|++++ |.|
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~   38 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE   38 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh
Confidence            4678999999999999999999999999998 644

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.13  E-value=1.6e-10  Score=97.86  Aligned_cols=52  Identities=15%  Similarity=0.096  Sum_probs=42.2

Q ss_pred             HHHHHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           81 KKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        81 k~~~~~~~~~l-~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .+.+.+....+ ++..|+|+|+|||||||+++.|++.+|++++++|+++++..
T Consensus        16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~   68 (243)
T 3tlx_A           16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAA   68 (243)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHH
Confidence            33344433333 57899999999999999999999999999999999988753

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.13  E-value=5e-11  Score=112.52  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcE-----eehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHH------h
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY-----FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL------S  161 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~-----~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L------~  161 (212)
                      +..|+|+|+|||||||+|+.||+.+++.+     ++.|++.++..+.....++|...+++.|+..|..+...+      .
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L  114 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL  114 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999996655     567999998887334567888888888876555433322      1


Q ss_pred             --cCCCEEE--EeCCceeechhhHHhcc-CC-eEEEEEe
Q 028227          162 --SMGRLVV--CAGNGAVQSSANLYEIS-GT-FKTWNII  194 (212)
Q Consensus       162 --~~~~~VV--a~GgG~V~~~~~~~~L~-~g-~vV~Ld~  194 (212)
                        ..+..||  +++++.......++.++ .+ .++||++
T Consensus       115 ~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~  153 (520)
T 2axn_A          115 AKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIES  153 (520)
T ss_dssp             HHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEE
Confidence              3455555  45444444444455554 35 4677765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.12  E-value=7e-10  Score=89.75  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=36.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ...|+|+|++||||||+++.||+.+|++++|+|+++++.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~   53 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAE   53 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHH
Confidence            468999999999999999999999999999999998765

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.09  E-value=6.5e-10  Score=94.32  Aligned_cols=108  Identities=11%  Similarity=0.071  Sum_probs=64.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCch----hhhhhhhch----HHHHHHHHHHHHHHhc
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESA----AKAFRESDE----KGYQQAETEVLKQLSS  162 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~si----~ei~~~~Ge----~~fr~~E~~vL~~L~~  162 (212)
                      +++.|+|+|+|||||+|+|+.||+.+|++++++++++.+... +..+    .++++ .|+    +...+.-.+.+.+...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence            456788999999999999999999999999999998876542 1222    22221 232    1122222222333222


Q ss_pred             -CCCEEEEeCCceeechhhHHhc-----cCCeEEEEEechhhhhccc
Q 028227          163 -MGRLVVCAGNGAVQSSANLYEI-----SGTFKTWNIIMDRRSSRHG  203 (212)
Q Consensus       163 -~~~~VVa~GgG~V~~~~~~~~L-----~~g~vV~Ld~~~~~v~R~~  203 (212)
                       ..++|+.   |.+-+....+.|     .-+.+|+|+++.+.+.+++
T Consensus       107 ~~~g~ilD---GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl  150 (217)
T 3umf_A          107 KNCHFLID---GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRL  150 (217)
T ss_dssp             TCSEEEEE---TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred             cccCcccc---cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHH
Confidence             2346663   444333322323     2578999999875444433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.09  E-value=1.5e-10  Score=95.17  Aligned_cols=102  Identities=13%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg------~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~  165 (212)
                      ++..|+|+|++||||||+++.|++.++      +.++|.|.+.+...+  .. .+....++..|+.... ++..+...+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~--~~-~~~~~~r~~~~~~~~~-~~~~~l~~g~   99 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK--DL-GFSEADRNENIRRIAE-VAKLFADSNS   99 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT--TC-CSSHHHHHHHHHHHHH-HHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc--cc-CCCHHHHHHHHHHHHH-HHHHHHHCCC
Confidence            478999999999999999999999887      888998887643321  11 1222445566665543 3444444567


Q ss_pred             EEEEeCCceeechhhHHhcc--------------CCeEEEEEechhhh
Q 028227          166 LVVCAGNGAVQSSANLYEIS--------------GTFKTWNIIMDRRS  199 (212)
Q Consensus       166 ~VVa~GgG~V~~~~~~~~L~--------------~g~vV~Ld~~~~~v  199 (212)
                      +||+... .. ...++++++              .+.+|||+++.+.+
T Consensus       100 ~VI~d~~-~~-~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~  145 (211)
T 1m7g_A          100 IAITSFI-SP-YRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA  145 (211)
T ss_dssp             EEEEECC-CC-CHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH
T ss_pred             EEEEecC-Cc-cHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHH
Confidence            7776632 22 123344332              15799999986533

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.09  E-value=9.1e-11  Score=94.23  Aligned_cols=40  Identities=20%  Similarity=0.181  Sum_probs=36.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ++..|.|+|++||||||+|+.||+. |++++|+|.++++..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~   46 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR   46 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence            3578999999999999999999998 999999999987665

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.08  E-value=5.2e-11  Score=96.54  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=35.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|.|+|++||||||+++.||+ +|++++|+|.++++.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~   39 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFY   39 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHh
Confidence            3799999999999999999999 9999999999988654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.07  E-value=1.3e-09  Score=86.14  Aligned_cols=39  Identities=10%  Similarity=0.117  Sum_probs=34.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~  132 (212)
                      +.|+|+|+|||||||+++.|++.++     +.+++.|+++.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            4689999999999999999999998     89999888886544

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.07  E-value=1.6e-10  Score=91.76  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh---CCcEeehhH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS  126 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~  126 (212)
                      .|+|+|++||||||+++.|++.+   |++++++|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~   36 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE   36 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            58999999999999999999998   999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.06  E-value=4.3e-10  Score=95.50  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=63.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhHHHH---------HHhCCCchhhhhhhhchHHHHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF---------EAAGGESAAKAFRESDEKGYQQAETEVLKQL  160 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~l~~---------~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L  160 (212)
                      ++..|+|+|+|||||||+++.|++.++  +.++|.|.+.+         ...| ....+++..    .+......+++.+
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~~  105 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTKL  105 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHHH
Confidence            467899999999999999999999987  67889998733         2233 333333321    1334445666666


Q ss_pred             hcC-CCEEEEeCCcee-echhhHHhcc-CCeE---EEEEec
Q 028227          161 SSM-GRLVVCAGNGAV-QSSANLYEIS-GTFK---TWNIIM  195 (212)
Q Consensus       161 ~~~-~~~VVa~GgG~V-~~~~~~~~L~-~g~v---V~Ld~~  195 (212)
                      ... .++||+++.+.. ....+...++ .+..   ||++++
T Consensus       106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~  146 (253)
T 2p5t_B          106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK  146 (253)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            654 478887655433 2344455555 5654   455665

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.05  E-value=8.9e-10  Score=89.81  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|++||||||+++.||..+   |..  ++|.|.+......  .+. +..+.....++. ...+...+...+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~   99 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR--DLS-FKAEDRAENIRR-VGEVAKLFADAGII   99 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT--TCC-SSHHHHHHHHHH-HHHHHHHHHHTTCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc--ccC-cChHHHHHHHHH-HHHHHHHHHhCCce
Confidence            57899999999999999999999998   666  9999988653211  110 111111222322 22344444445556


Q ss_pred             EEEeCCceeechhhHHhcc----C--CeEEEEEechh-hhhc
Q 028227          167 VVCAGNGAVQSSANLYEIS----G--TFKTWNIIMDR-RSSR  201 (212)
Q Consensus       167 VVa~GgG~V~~~~~~~~L~----~--g~vV~Ld~~~~-~v~R  201 (212)
                      ||.+..+.  ....++.++    .  .++|||+++.+ +.+|
T Consensus       100 vi~~~~~~--~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R  139 (200)
T 3uie_A          100 CIASLISP--YRTDRDACRSLLPEGDFVEVFMDVPLSVCEAR  139 (200)
T ss_dssp             EEEECCCC--CHHHHHHHHHTSCTTSEEEEEECCCHHHHHHH
T ss_pred             EEEecCCc--hHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHh
Confidence            66543322  233444443    2  25699999754 4444

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.05  E-value=1.1e-09  Score=89.94  Aligned_cols=52  Identities=19%  Similarity=0.148  Sum_probs=41.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--CCCchhhhhhhhc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESD  145 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G~~si~ei~~~~G  145 (212)
                      +..|.|+|++||||||+++.|++ +|++++|+|.+.++..  |...+.++++..|
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g   57 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFG   57 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhH
Confidence            56899999999999999999998 9999999999988754  2233444444444

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.04  E-value=3e-10  Score=96.71  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~  130 (212)
                      ++..|.|+|++||||||+++.||++||+.++|.|.++..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            467999999999999999999999999999999999844

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.04  E-value=4.2e-10  Score=94.35  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +.|+|+|||||||+|+|+.||+++|++++++.+++.+.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~   38 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREA   38 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHH
Confidence            36899999999999999999999999999999988765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.04  E-value=4.1e-10  Score=91.52  Aligned_cols=53  Identities=21%  Similarity=0.164  Sum_probs=40.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC--CCchhhhhhhhchH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK  147 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G--~~si~ei~~~~Ge~  147 (212)
                      ..|.|+|++||||||+++.||+ +|++++|+|.+.++...  ...+.++++..|+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~   57 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQ   57 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHH
Confidence            4689999999999999999998 99999999999876431  12334455555543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.04  E-value=5.3e-10  Score=87.16  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ..|+|+|++||||||+++.||+.+|++++|.|.+....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~   39 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK   39 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccch
Confidence            37899999999999999999999999999999987753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.04  E-value=7e-10  Score=88.45  Aligned_cols=104  Identities=17%  Similarity=0.149  Sum_probs=59.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehh--HHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSD--SLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D--~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      ++..|+|+|++||||||+++.|++.+   |+++++.|  .+......  ... +....++..|++.+.. ...+...+ .
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~   78 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK--NLG-FSPEDREENVRRIAEV-AKLFADAG-L   78 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT--TCC-SSHHHHHHHHHHHHHH-HHHHHHTT-C
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh--ccc-cccccHHHHHHHHHHH-HHHHHHCC-C
Confidence            57889999999999999999999998   98888554  43221111  000 1112345666665532 22232333 3


Q ss_pred             EEEeCCce-ee---chhhHHhcc-CC---eEEEEEechh-hhhc
Q 028227          167 VVCAGNGA-VQ---SSANLYEIS-GT---FKTWNIIMDR-RSSR  201 (212)
Q Consensus       167 VVa~GgG~-V~---~~~~~~~L~-~g---~vV~Ld~~~~-~v~R  201 (212)
                      ++.++ +. +.   ...++++++ .+   .+|||+++.+ .++|
T Consensus        79 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R  121 (179)
T 2pez_A           79 VCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR  121 (179)
T ss_dssp             EEEEE-CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHH
T ss_pred             EEEEe-cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHH
Confidence            44333 22 22   122333333 33   7899999754 3344

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.02  E-value=1.8e-11  Score=102.53  Aligned_cols=40  Identities=18%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~  130 (212)
                      .++..|.|+|++||||||+++.||+.+|++++|+|.+++.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~   53 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA   53 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence            3578999999999999999999999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.02  E-value=1.8e-10  Score=94.45  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=36.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +..|.|+|++||||||+++.|++.+|++++|+|+++.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence            468999999999999999999999999999999998753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.02  E-value=1.2e-10  Score=98.59  Aligned_cols=38  Identities=13%  Similarity=0.034  Sum_probs=34.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCc----------EeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~----------~~d~D~l~~  129 (212)
                      +...|.|+|++||||||+|+.||+.+|++          ++|+|++++
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            45689999999999999999999999998          799999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.01  E-value=6.5e-10  Score=89.15  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhh-chHHHHHHHHHHHHHHhcCC
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRES-DEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~-Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      .++..|+|+|++||||||+++.||+.++     +.++|.|.+.+...+..    .+... .+..++.. ..+.+.+...+
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~r~~~~~~~-~~~~~~~~~~g   85 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGA----GFTREERLRHLKRI-AWIARLLARNG   85 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTC----CCCHHHHHHHHHHH-HHHHHHHHTTT
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhcc----CCChhhHHHHHHHH-HHHHHHHHhCC
Confidence            3578899999999999999999999885     46789998855333210    11111 11122211 12223334445


Q ss_pred             CEEEEeCCceee---chhhHHhcc----CCeEEEEEechh
Q 028227          165 RLVVCAGNGAVQ---SSANLYEIS----GTFKTWNIIMDR  197 (212)
Q Consensus       165 ~~VVa~GgG~V~---~~~~~~~L~----~g~vV~Ld~~~~  197 (212)
                      .+||+.+ ....   ....++++.    .+.+|||+++.+
T Consensus        86 ~~vi~d~-~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e  124 (186)
T 2yvu_A           86 VIVICSF-VSPYKQARNMVRRIVEEEGIPFLEIYVKASLE  124 (186)
T ss_dssp             CEEEEEC-CCCCHHHHHHHHHHHHHTTCCEEEEEEECCHH
T ss_pred             CEEEEeC-ccccHHHHHHHHHHhhccCCCeEEEEEeCCHH
Confidence            5666543 2221   122333333    258999999754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.01  E-value=4e-10  Score=96.92  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh-CCC----chhhhhhhhchHHHHHHHHHHHHH-Hhc---C
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQ-LSS---M  163 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~-G~~----si~ei~~~~Ge~~fr~~E~~vL~~-L~~---~  163 (212)
                      ...+.|+|+|||||||+++.||+.+|++++++|+++++.. .+.    .+.+++. .|+....+....++++ |..   .
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccC
Confidence            5688999999999999999999999999999999988642 112    2333333 2433333333344433 322   3


Q ss_pred             CCEEEEeCCceeechhhHHhcc-----CCeEEEEEechh
Q 028227          164 GRLVVCAGNGAVQSSANLYEIS-----GTFKTWNIIMDR  197 (212)
Q Consensus       164 ~~~VVa~GgG~V~~~~~~~~L~-----~g~vV~Ld~~~~  197 (212)
                      ++||+.   |.+......+.|.     -+.||||+++.+
T Consensus        87 ~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e  122 (230)
T 3gmt_A           87 NGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFS  122 (230)
T ss_dssp             TCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHH
T ss_pred             CCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHH
Confidence            567773   3443333333343     468999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.00  E-value=8.9e-10  Score=94.48  Aligned_cols=101  Identities=7%  Similarity=0.004  Sum_probs=59.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHhCCCchhh--hhhhhchHHHHHHHHHHHHHHh---cCCCEE
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK--AFRESDEKGYQQAETEVLKQLS---SMGRLV  167 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~~~~G~~si~e--i~~~~Ge~~fr~~E~~vL~~L~---~~~~~V  167 (212)
                      ..|+|+|+|||||||+++.|++.+ |+.+++.|.+.+...+ .....  -+...++..+.+...+.+....   ..+..|
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v   81 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV   81 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEE
Confidence            579999999999999999999984 9999999987776654 21110  1112233333333334444444   344444


Q ss_pred             EEeCCceeechhhHHhc----c-CC---eEEEEEechh
Q 028227          168 VCAGNGAVQSSANLYEI----S-GT---FKTWNIIMDR  197 (212)
Q Consensus       168 Va~GgG~V~~~~~~~~L----~-~g---~vV~Ld~~~~  197 (212)
                      |..|.  ......++.+    + .+   .+|||+++.+
T Consensus        82 i~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e  117 (301)
T 1ltq_A           82 IISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWT  117 (301)
T ss_dssp             EECSC--CCCHHHHHHHHHHHHHTTCEEEEEECCCCHH
T ss_pred             EEeCC--CCCHHHHHHHHHHHHHcCCcEEEEEEECCHH
Confidence            44332  2222223322    1 22   6899999754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.99  E-value=1.9e-10  Score=103.34  Aligned_cols=79  Identities=23%  Similarity=0.304  Sum_probs=64.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCc--------------------hhhhhhhhchHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQAE  153 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~s--------------------i~ei~~~~Ge~~fr~~E  153 (212)
                      ..|+|+|++||||||+|+.||+.+++.+++.|.+.... | ++                    +.++....++..|++.+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a   83 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA   83 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence            57999999999999999999999999999999874321 1 22                    23445667889999999


Q ss_pred             HHHHHHHhcCCCEEEEeCCce
Q 028227          154 TEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus       154 ~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      .++++++...+..+|.+||+.
T Consensus        84 ~~~i~~i~~~g~~~IlvGGt~  104 (323)
T 3crm_A           84 LAAMAKATARGRIPLLVGGTM  104 (323)
T ss_dssp             HHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHHHHHcCCeEEEECCch
Confidence            999999988888888888764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.98  E-value=2.3e-10  Score=97.79  Aligned_cols=99  Identities=9%  Similarity=-0.040  Sum_probs=61.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH---hC--CCchh-------------hhhh-hhchHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AG--GESAA-------------KAFR-ESDEKGYQQAET  154 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~---~G--~~si~-------------ei~~-~~Ge~~fr~~E~  154 (212)
                      +.|+|+|++||||||+|+.||+.+++++++.|.+....   .+  .....             +..+ ..+...|++.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            36899999999999999999999999999999975311   01  00000             1111 245567877777


Q ss_pred             HHHHHHhcCCCEEEEeCCceeechhhHHhcc-----CC---eEEEEEech
Q 028227          155 EVLKQLSSMGRLVVCAGNGAVQSSANLYEIS-----GT---FKTWNIIMD  196 (212)
Q Consensus       155 ~vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~-----~g---~vV~Ld~~~  196 (212)
                      ..+ ++...+..||.+|++..   ...+++.     .+   .+|||+++.
T Consensus        82 ~~i-~~~~~g~~vIl~gg~~~---~~~~~~~~~~~~~~~~~~~i~l~~~~  127 (253)
T 2ze6_A           82 FEV-DWRKSEEGLILEGGSIS---LLNCMAKSPFWRSGFQWHVKRLRLGD  127 (253)
T ss_dssp             HHH-HTTTTSSEEEEEECCHH---HHHHHHHCTTTTSSCEEEEEECCCCC
T ss_pred             HHH-HHHhCCCCeEEeccHHH---HHHHHHhcccccccCceEEEEecchh
Confidence            777 66555554454443221   1122222     22   689999874

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.96  E-value=2e-09  Score=104.32  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHhCCCchhhhhh-hhchHHHHHHHHHHHHHHhcCCCE
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~D~l~~~~~G~~si~ei~~-~~Ge~~fr~~E~~vL~~L~~~~~~  166 (212)
                      +++..|+|+|++||||||+|+.|++.|   |++++++|....+. + ......+. +.+++.|++.. ++.+.+...+.+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-~-L~~~~~fs~~dree~~r~i~-eva~~~l~~G~i  126 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIA-EVAKLFADAGLV  126 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-T-TTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-c-cCccccCChhhhHHHHHHHH-HHHHHHHhCCCE
Confidence            467899999999999999999999999   99988776433321 2 22223344 45677787763 355555555556


Q ss_pred             EEEeCCceee---chhhHHhcc-C---CeEEEEEechhh
Q 028227          167 VVCAGNGAVQ---SSANLYEIS-G---TFKTWNIIMDRR  198 (212)
Q Consensus       167 VVa~GgG~V~---~~~~~~~L~-~---g~vV~Ld~~~~~  198 (212)
                      ||+. .+.+.   ...++++++ .   .++|||+++.+.
T Consensus       127 VI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Ev  164 (630)
T 1x6v_B          127 CITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHV  164 (630)
T ss_dssp             EEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHH
T ss_pred             EEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHH
Confidence            6643 33332   234445554 3   359999997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.95  E-value=3.8e-09  Score=84.96  Aligned_cols=37  Identities=27%  Similarity=0.224  Sum_probs=35.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .|.|+|++||||||+|+.||+.+|++++|.|.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence            7999999999999999999999999999999998764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.93  E-value=3.6e-10  Score=90.96  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~  126 (212)
                      ++..|+|+|++||||||+++.|++.+ |+++++.+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~   38 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF   38 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence            47889999999999999999999998 688888764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.92  E-value=1.2e-09  Score=104.10  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg------~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~  165 (212)
                      ++..|+|+|++||||||+++.||..++      +.++|.|.+.+.+.+  .+. +-...++..++. ...+.+.+...++
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~--~l~-f~~~~r~~~~r~-i~~v~q~l~~~~~  443 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS--ELG-FSKAHRDVNVRR-IGFVASEITKNRG  443 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS--SCC-CSHHHHHHHHHH-HHHHHHHHHHTTC
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc--ccC-CCHHHHHHHHHH-HHHHHHHHHhcCC
Confidence            578999999999999999999999984      567999998765322  221 111123334443 3556677766778


Q ss_pred             EEEEeCCc--eeechhhHHhcc-CC--eEEEEEechhh
Q 028227          166 LVVCAGNG--AVQSSANLYEIS-GT--FKTWNIIMDRR  198 (212)
Q Consensus       166 ~VVa~GgG--~V~~~~~~~~L~-~g--~vV~Ld~~~~~  198 (212)
                      .|++++++  ......++++++ .+  ++|||+++.+.
T Consensus       444 ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~  481 (552)
T 3cr8_A          444 IAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIET  481 (552)
T ss_dssp             EEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----
T ss_pred             EEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHH
Confidence            88876643  334456677776 56  89999987543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.91  E-value=2.4e-10  Score=105.62  Aligned_cols=68  Identities=19%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh-----hHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-----DSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL  160 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~-----D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L  160 (212)
                      +..|+|+|+|||||||+++.||+.+++.++|+     |.+.++..|.....++++..|++.++..|..++..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence            56899999999999999999999987665554     457777776323457888889887776666544443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.90  E-value=3.4e-09  Score=88.97  Aligned_cols=39  Identities=15%  Similarity=0.122  Sum_probs=35.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~  130 (212)
                      ++..|+|+|++||||||+++.||+.+|+.+++.|+++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~   64 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE   64 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            367999999999999999999999999999999988765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.88  E-value=6.3e-09  Score=90.69  Aligned_cols=103  Identities=12%  Similarity=0.044  Sum_probs=62.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHhCCCchhhhhhhhc-------hHHHHHHHHHHHHHHh-
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESD-------EKGYQQAETEVLKQLS-  161 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l--g~~~~d~D~l~~~~~G~~si~ei~~~~G-------e~~fr~~E~~vL~~L~-  161 (212)
                      ++..|+|+|+|||||||+++.|++.+  ++.+++.|.+.....+   ..++....+       ..+|......+++.+. 
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~  108 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  108 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999998  8999999988643222   111111111       2344454445555544 


Q ss_pred             cCCCEEEEeCCceee-chhhHHhcc-CC---eEEEEEechh
Q 028227          162 SMGRLVVCAGNGAVQ-SSANLYEIS-GT---FKTWNIIMDR  197 (212)
Q Consensus       162 ~~~~~VVa~GgG~V~-~~~~~~~L~-~g---~vV~Ld~~~~  197 (212)
                      ...++|+.+..+... ....++.++ .+   .++|+.++.+
T Consensus       109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~  149 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI  149 (287)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHH
T ss_pred             cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHH
Confidence            355677754433221 123344444 33   3677887654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.87  E-value=1.9e-08  Score=87.19  Aligned_cols=39  Identities=28%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +..|+|+|++||||||+|+.|+ .+|++++|+|.+.++..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~  113 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY  113 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh
Confidence            4579999999999999999999 68999999999976543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.83  E-value=1.1e-08  Score=87.64  Aligned_cols=40  Identities=25%  Similarity=0.206  Sum_probs=36.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ++..|.|+|++||||||+++.||+.+|+.++|.|.++...
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            3578999999999999999999999999999999997654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.82  E-value=4e-09  Score=85.29  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++..|+|+|++||||||+++.|++.++.++++.|
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            5789999999999999999999999987777664

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.82  E-value=4.2e-09  Score=84.15  Aligned_cols=29  Identities=21%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      .|+|+|++||||||+++.||+.+++.+++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            68999999999999999999999998875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.81  E-value=2.1e-09  Score=98.31  Aligned_cols=87  Identities=17%  Similarity=0.080  Sum_probs=58.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G  171 (212)
                      ++..|+|+|+|||||||+++.|++.+++.++|.|.+     +              .|+.....+.+.+.....+||.+.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~--------------~~~~~~~~~~~~l~~g~~vIiD~~  317 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G--------------SWQRCVSSCQAALRQGKRVVIDNT  317 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C--------------SHHHHHHHHHHHHHTTCCEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H--------------HHHHHHHHHHHHHhcCCcEEEeCC
Confidence            367899999999999999999999999999999985     1              123344445555665566777654


Q ss_pred             Ccee-echhhHHhcc-CC---eEEEEEechh
Q 028227          172 NGAV-QSSANLYEIS-GT---FKTWNIIMDR  197 (212)
Q Consensus       172 gG~V-~~~~~~~~L~-~g---~vV~Ld~~~~  197 (212)
                      +... .....+++++ .+   .+|||+++.+
T Consensus       318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e  348 (416)
T 3zvl_A          318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIE  348 (416)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEEECCCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHH
Confidence            4221 1222223333 23   6899998753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.81  E-value=2.8e-08  Score=79.73  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCc--Eee
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFD  123 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~--~~d  123 (212)
                      +++..|+|+|+|||||||+++.||+.++..  +++
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~   36 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL   36 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence            457889999999999999999999999874  554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.80  E-value=1.2e-08  Score=81.81  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC-cEeehhHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFE  130 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~-~~~d~D~l~~~  130 (212)
                      +..|+|+|++||||||+++.|+..++. .+++.|++.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~   40 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM   40 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh
Confidence            457899999999999999999998875 89999988653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.77  E-value=3.9e-10  Score=102.77  Aligned_cols=64  Identities=14%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcE--------------------eehhHHHHHHhCCCchhhhhhhhchHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE  153 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~--------------------~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E  153 (212)
                      .+|+|+|+|||||||+++.||+.++++|                    +|+|..+++..| +++.++|++.|+ .||+.|
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E  102 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE  102 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence            4699999999999999999999999999                    999999998887 889999999999 999988


Q ss_pred             HHHHHH
Q 028227          154 TEVLKQ  159 (212)
Q Consensus       154 ~~vL~~  159 (212)
                      ...++.
T Consensus       103 ~~~~~~  108 (359)
T 2ga8_A          103 DVNFQP  108 (359)
T ss_dssp             CTTCCC
T ss_pred             hhhccc
Confidence            876653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.72  E-value=5e-09  Score=84.71  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ++..|+|+|++||||||+++.|++.++..+++.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v   40 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA   40 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            478999999999999999999999886555443

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.70  E-value=3.9e-08  Score=93.95  Aligned_cols=101  Identities=19%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHhCCCchhhhhhh-hchHHHHHHHHHHHHHHhcCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg------~~~~d~D~l~~~~~G~~si~ei~~~-~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      ++..|+|+|++||||||+|+.|++.|+      +.++|.|.+.....+..    .|.. ...+.++.. .++++.+...+
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~----~f~~~er~~~i~ri-~~v~~~~~~~g  469 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSEL----GFTREDRHTNIQRI-AFVATELTRAG  469 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTC----CCSHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcccc----CCChhHHHHHHHHH-HHHHHHHHhCC
Confidence            357899999999999999999999987      35678888766433211    1111 111222222 34666666667


Q ss_pred             CEEEEeCCcee--echhhHHhccC-C--eEEEEEechh
Q 028227          165 RLVVCAGNGAV--QSSANLYEISG-T--FKTWNIIMDR  197 (212)
Q Consensus       165 ~~VVa~GgG~V--~~~~~~~~L~~-g--~vV~Ld~~~~  197 (212)
                      .+||++.-...  ....++++++. +  ++|||+++.+
T Consensus       470 ~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~e  507 (573)
T 1m8p_A          470 AAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLE  507 (573)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHH
T ss_pred             CEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHH
Confidence            77876522110  01234444543 5  8999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.68  E-value=6.2e-09  Score=85.02  Aligned_cols=26  Identities=15%  Similarity=0.102  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|+|+|++||||||+++.|++.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999999999988

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.68  E-value=2.3e-08  Score=84.68  Aligned_cols=55  Identities=15%  Similarity=0.055  Sum_probs=46.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh--CCCchhhhhhhhchHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGY  149 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~--G~~si~ei~~~~Ge~~f  149 (212)
                      -.|.|+|.+||||||+++.|++ +|++++|+|.+.++..  |+..+.++++.+|++.|
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~   66 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFV   66 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGB
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhc
Confidence            4789999999999999999998 9999999999998876  33556677777776544

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.63  E-value=1e-07  Score=90.58  Aligned_cols=99  Identities=19%  Similarity=0.221  Sum_probs=59.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHhCCCchhhhhhhhc-hHHHHHHHHHHHHHHhcCCCE
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGRL  166 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~~~~G~~si~ei~~~~G-e~~fr~~E~~vL~~L~~~~~~  166 (212)
                      +..|+|+|++||||||+|+.|++.++     +.++|.|.+.+...+..    .|.... ...++.. .++...+...+..
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~----~f~~~er~~~l~~i-~~~~~~~l~~G~~  446 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL----GFSKEDRITNILRV-GFVASEIVKHNGV  446 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTC----CSSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccc----cccHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence            57899999999999999999999887     48899998766544311    121111 1112221 1233444444555


Q ss_pred             EEEeCCceeech----hhHHhcc-CC-eEEEEEechhh
Q 028227          167 VVCAGNGAVQSS----ANLYEIS-GT-FKTWNIIMDRR  198 (212)
Q Consensus       167 VVa~GgG~V~~~----~~~~~L~-~g-~vV~Ld~~~~~  198 (212)
                      ||..+.  ....    .++++++ .+ ++|||+++.+.
T Consensus       447 VI~d~~--~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~  482 (546)
T 2gks_A          447 VICALV--SPYRSARNQVRNMMEEGKFIEVFVDAPVEV  482 (546)
T ss_dssp             EEEECC--CCCHHHHHHHHTTSCTTCEEEEEEECCGGG
T ss_pred             EEEEcC--CCCHHHHHHHHHHhhcCCEEEEEEeCCHHH
Confidence            554421  1122    2334444 35 89999997643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.61  E-value=2.3e-08  Score=90.37  Aligned_cols=100  Identities=14%  Similarity=0.136  Sum_probs=65.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHH------------HhCC----CchhhhhhhhchHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFE------------AAGG----ESAAKAFRESDEKGYQQAETE  155 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~------------~~G~----~si~ei~~~~Ge~~fr~~E~~  155 (212)
                      ..|+|+|++||||||+|+.||+.++..+++.|.+  +..            ..+.    .++.+.........|.+.+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~   87 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK   87 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence            5799999999999999999999999999999997  221            1110    011222234556778887778


Q ss_pred             HHHHHhcCCCEEEEeCCceeechhhHHhccCCeEEEEE-echh
Q 028227          156 VLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNI-IMDR  197 (212)
Q Consensus       156 vL~~L~~~~~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld-~~~~  197 (212)
                      .+..+...+..||.+||+..+...    +..++.+|.+ .+.+
T Consensus        88 ~i~~i~~~g~~~IlvGGt~ly~~~----l~~~l~~~~~~~d~~  126 (340)
T 3d3q_A           88 YIKDITRRGKVPIIAGGTGLYIQS----LLYNYAFEDESISED  126 (340)
T ss_dssp             HHHHHHHTTCEEEEECCCHHHHHH----HHBCSCCC---CCHH
T ss_pred             HHHHHHhCCCcEEEECChhhhHHH----HHhcccccCCCCChH
Confidence            888877667778878775543222    2234446777 5443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.56  E-value=1.9e-07  Score=74.25  Aligned_cols=39  Identities=26%  Similarity=0.215  Sum_probs=33.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCc--EeehhHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFE  130 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~--~~d~D~l~~~  130 (212)
                      +|..|+|+|++||||||+++.||..++..  ++|.|++.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~   48 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY   48 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence            57899999999999999999999876554  8899988653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.55  E-value=1e-07  Score=77.45  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-CCcEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d~D~l~~  129 (212)
                      +..|.|+|++||||||+++.|++.+ ++.+++.|.++.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~   58 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK   58 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence            5789999999999999999999988 899999999865

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.39  E-value=6.3e-07  Score=84.88  Aligned_cols=77  Identities=9%  Similarity=0.048  Sum_probs=52.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC-------cEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~-------~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      ++..|+|+|++||||||||++||++|+.       .|+|.|.      .    .+             ...++..+...+
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~------~----~e-------------i~~va~~~~~~G  450 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN------K----TE-------------LLSLIQDFIGSG  450 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT------C----HH-------------HHTTHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC------c----HH-------------HHHHHHHHHhcC
Confidence            4679999999999999999999999996       7999998      1    01             011233344445


Q ss_pred             CEEEEeCCceeechhhHHhccCCeEEEEEe
Q 028227          165 RLVVCAGNGAVQSSANLYEISGTFKTWNII  194 (212)
Q Consensus       165 ~~VVa~GgG~V~~~~~~~~L~~g~vV~Ld~  194 (212)
                      ..||++.-   ....+|++++.+.+++|..
T Consensus       451 ~~Vv~~~~---sp~~~R~~l~~g~fv~v~~  477 (511)
T 1g8f_A          451 SGLIIPDQ---WEDDKDSVVGKQNVYLLDT  477 (511)
T ss_dssp             CEEEESSC---CCGGGGGGSCCTTEEEEES
T ss_pred             CeEEEecC---CHHHHHHHhcCCCEEEEec
Confidence            55554321   1136788887666777763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.37  E-value=8.6e-07  Score=79.75  Aligned_cols=83  Identities=23%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--H------------HHHhCC----CchhhhhhhhchHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--V------------FEAAGG----ESAAKAFRESDEKGYQQA  152 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~------------~~~~G~----~si~ei~~~~Ge~~fr~~  152 (212)
                      |++..|+|+||+||||||++..||+.++..+++.|..  +            ++..|.    .++.++-+......|.+.
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~   80 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDL   80 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHH
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHH
Confidence            3567899999999999999999999999999999986  2            122220    111122233445677777


Q ss_pred             HHHHHHHHhcCCCEEEEeCCc
Q 028227          153 ETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus       153 E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      -...++++...+..+|-+||.
T Consensus        81 a~~~i~~i~~~gk~pIlVGGT  101 (322)
T 3exa_A           81 ATPLITEIHERGRLPFLVGGT  101 (322)
T ss_dssp             HHHHHHHHHHTTCEEEEESCC
T ss_pred             HHHHHHHHHhCCCcEEEEcCc
Confidence            777888888777777777763

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.33  E-value=8.3e-07  Score=74.73  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=28.9

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeeh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS  124 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~  124 (212)
                      -++..|+|.|++||||||+++.|++.++  +.++..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~   59 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT   59 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence            3578999999999999999999999986  566543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.25  E-value=6.7e-07  Score=84.40  Aligned_cols=78  Identities=23%  Similarity=0.175  Sum_probs=58.1

Q ss_pred             cccCCCceeecccccCCCccccceecc--CCcc-------------hHHHHHHHH------HhcccCCcEEEEEccCCCC
Q 028227           47 IISRKPRITTRSIADDTTSNTVTKVAA--EDPS-------------FAVKKKAAD------ISTELKGTSVFLVGMNNAI  105 (212)
Q Consensus        47 ~~~~~~~~~t~~~~~~~~~~~~~~~~~--~d~~-------------~~lk~~~~~------~~~~l~~~~I~LvG~~GsG  105 (212)
                      ...++++.++++|.+|.+..||.....  +|..             ..++++..+      +...+++..++|+|+||||
T Consensus        41 ~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtG  120 (543)
T 3m6a_A           41 PSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVG  120 (543)
T ss_dssp             SSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSS
T ss_pred             CCCCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCC
Confidence            446788999999999988788877652  2221             234444433      2445578899999999999


Q ss_pred             HHHHHHHHHHHhCCcEeeh
Q 028227          106 KTHLGKFLADALRYYYFDS  124 (212)
Q Consensus       106 KTTvak~LA~~lg~~~~d~  124 (212)
                      |||+++.||..++.++...
T Consensus       121 KTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          121 KTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             HHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEE
Confidence            9999999999998887643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.19  E-value=1.7e-06  Score=70.75  Aligned_cols=48  Identities=21%  Similarity=0.126  Sum_probs=35.3

Q ss_pred             HHHHHHHHhcc-cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHH
Q 028227           80 VKKKAADISTE-LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL  127 (212)
Q Consensus        80 lk~~~~~~~~~-l~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l  127 (212)
                      +.+.++.+... -++..|.|+|++||||||+++.|+..+.     ..++..|..
T Consensus         8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A            8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            33334444332 3578999999999999999999998875     566777664

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.15  E-value=1.7e-06  Score=71.05  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +|..|+|+||+||||||+++.|++.++
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            478899999999999999999998874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.14  E-value=2.2e-06  Score=68.70  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=24.8

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +++..++|+||+||||||+.+.|+..+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            568899999999999999999999875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.11  E-value=4.6e-06  Score=74.84  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=55.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH--------------HHHhC----CCchhhhhhhhchHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--------------FEAAG----GESAAKAFRESDEKGYQQAET  154 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~--------------~~~~G----~~si~ei~~~~Ge~~fr~~E~  154 (212)
                      +..|+|+||+||||||++..||+.++..+++.|...              ++..|    -.+..+.-+......|.+.-.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~   89 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDAL   89 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHH
Confidence            567899999999999999999999999999999852              11111    011112222334567777667


Q ss_pred             HHHHHHhcCCCEEEEeCC
Q 028227          155 EVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus       155 ~vL~~L~~~~~~VVa~Gg  172 (212)
                      +.++++...+...|-+||
T Consensus        90 ~~i~~i~~~g~~pilVGG  107 (316)
T 3foz_A           90 AEMADITAAGRIPLLVGG  107 (316)
T ss_dssp             HHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHhCCCcEEEEcC
Confidence            778888777776666665

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=7.2e-06  Score=75.74  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||.+|+++|..++++|+..+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~  214 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS  214 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence            4688999999999999999999999999997654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=4.6e-06  Score=77.33  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||++|+++|..++++|+..+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~  238 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN  238 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            4678999999999999999999999999998554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.06  E-value=4.6e-06  Score=77.13  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=57.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH--HHHH------------hCC----CchhhhhhhhchHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGG----ESAAKAFRESDEKGYQQAET  154 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l--~~~~------------~G~----~si~ei~~~~Ge~~fr~~E~  154 (212)
                      +..|+|+||+||||||++..||+.++..+++.|..  +..+            .|.    .+..++-+......|.+...
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~   81 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM   81 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence            35789999999999999999999999999999983  2211            110    01112222344577888778


Q ss_pred             HHHHHHhcCCCEEEEeCCc
Q 028227          155 EVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus       155 ~vL~~L~~~~~~VVa~GgG  173 (212)
                      .+++++...+..+|-+||.
T Consensus        82 ~~i~~i~~~g~~pilVGGT  100 (409)
T 3eph_A           82 NAIEDIHRRGKIPIVVGGT  100 (409)
T ss_dssp             HHHHHHHTTTCEEEEECSC
T ss_pred             HHHHHHHhcCCCEEEECCh
Confidence            8888888777777767763

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.06  E-value=3.2e-06  Score=71.50  Aligned_cols=32  Identities=13%  Similarity=0.053  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEee
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD  123 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d  123 (212)
                      ++..|+|.|++||||||+++.|++.+ ++.++.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            46789999999999999999999998 677774

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.03  E-value=4.3e-06  Score=69.97  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..|+|+|+|||||||+++.+|..++.+++..+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~   77 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            567999999999999999999999998877554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.00  E-value=7.3e-06  Score=76.21  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||++|+++|..+|++|+..+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~  247 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP  247 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            4689999999999999999999999999987543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.99  E-value=1.3e-05  Score=75.26  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||.+|+++|..++++|+..+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs  275 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI  275 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence            4789999999999999999999999999997654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.98  E-value=4.5e-06  Score=67.56  Aligned_cols=38  Identities=24%  Similarity=0.130  Sum_probs=34.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~l~~  129 (212)
                      ++..|.|+|++||||||+++.|+..++  +.+++.|.++.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            467899999999999999999999999  99999998654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=1.1e-05  Score=74.97  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||.+|+++|..++++|+..+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~  247 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLA  247 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            4789999999999999999999999999987543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.94  E-value=5.8e-06  Score=71.64  Aligned_cols=33  Identities=6%  Similarity=-0.114  Sum_probs=29.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..++|+||||||||++++.+|+.+|++|+..+
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            468899999999999999999999998887544

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=1.1e-05  Score=75.24  Aligned_cols=34  Identities=24%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||.+|+++|..++++|+..+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~  248 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV  248 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence            3688999999999999999999999999997553

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.94  E-value=2e-05  Score=62.97  Aligned_cols=27  Identities=30%  Similarity=0.240  Sum_probs=24.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +|..|.|+|++||||||+++.|+..+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            578999999999999999999998764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.92  E-value=1.8e-05  Score=68.95  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..|+|+|+||||||++++.+|+.++.+|+..+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~   83 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS   83 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence            568999999999999999999999998887543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.88  E-value=3.1e-05  Score=61.28  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhccc---CCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhHHHHHH
Q 028227           79 AVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLVFEA  131 (212)
Q Consensus        79 ~lk~~~~~~~~~l---~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~l~~~~  131 (212)
                      ...+.+.++...+   ++..++|+|++|+||||+++.++..+    |  +.|++.++++...
T Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~   82 (180)
T 3ec2_A           21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL   82 (180)
T ss_dssp             HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            3444555543332   37899999999999999999999876    4  4677888776544

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.88  E-value=9.9e-06  Score=75.51  Aligned_cols=52  Identities=13%  Similarity=0.268  Sum_probs=37.9

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH--HHH-HHhCCCchhhhhhh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVF-EAAGGESAAKAFRE  143 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~--l~~-~~~G~~si~ei~~~  143 (212)
                      +.+.+|+|+||||||||++++.||+.++++|++.|.  +.. .+.| .+..+++..
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG-~d~e~~lr~  102 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-KEVDSIIRD  102 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC-CCTHHHHHH
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee-ccHHHHHHH
Confidence            456789999999999999999999999999987764  333 2344 344444433

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.88  E-value=0.00022  Score=59.52  Aligned_cols=29  Identities=34%  Similarity=0.407  Sum_probs=25.3

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .+++.-|+|.|++||||||+++.|++.+.
T Consensus         3 ~m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            3 AMTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999884

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.88  E-value=3.4e-05  Score=66.72  Aligned_cols=42  Identities=21%  Similarity=0.207  Sum_probs=34.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      .+..|+|+|+||||||++++.+|..++.+|+..  .++.....|
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g   91 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG   91 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence            468899999999999999999999999888654  455555555

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.87  E-value=3.8e-06  Score=73.31  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=30.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~~  129 (212)
                      +..|.|.|++||||||+++.|++.+|     +.++|+|+++.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            46799999999999999999999888     79999999873

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.87  E-value=1.2e-05  Score=66.65  Aligned_cols=33  Identities=21%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+..|+|+|+||+|||++++.+|+.++.+++..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            357899999999999999999999999888743

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.85  E-value=2.8e-05  Score=66.05  Aligned_cols=27  Identities=26%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++.-|+|.|++||||||+++.|++.+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999988

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.84  E-value=1.1e-05  Score=71.27  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      .+..|+|+|+||||||++|+.||+.++.+|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence            46789999999999999999999999999987654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.83  E-value=2.9e-05  Score=65.44  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+..++|+|+||+|||++++.+|+.++.+++..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            468899999999999999999999999888753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.79  E-value=1.7e-05  Score=67.43  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +..|+|+|+||||||++++.+|+.++.+|+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            67999999999999999999999999888643

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.79  E-value=0.0002  Score=61.10  Aligned_cols=30  Identities=13%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +.+++.-|+|.|++||||||+++.|++.++
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999998874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.76  E-value=5.3e-05  Score=58.21  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=23.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+..++|+|++|+|||++++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999987

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.75  E-value=3.7e-05  Score=70.49  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=31.9

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD  125 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D  125 (212)
                      +...+..|+|+||||||||++|+.+|+.++  ++|+..+
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~   97 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV   97 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence            444568999999999999999999999999  7887655

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.74  E-value=2.1e-05  Score=66.40  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+.+++|+|+||+|||++++.+|+.++.+++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i   81 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            467899999999999999999999999887643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.74  E-value=4e-05  Score=59.16  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+++..+.+.. -.+..++|+|++|+|||++++.+++.+
T Consensus        30 ~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           30 EIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             HHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            44443443333 236789999999999999999999987

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.73  E-value=2e-05  Score=69.73  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .+.+|+|+|+||+|||++|+.||+.++.+|+..|
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            3568999999999999999999999998887654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.71  E-value=2.1e-05  Score=66.32  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ....++|+|+||+|||++++.+|+.++++|+..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            357899999999999999999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.69  E-value=4.6e-05  Score=61.35  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-----CcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-----~~~~d~D~l~  128 (212)
                      .+..++|+|++|+|||++++.+++.++     +.+++.+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            578999999999999999999998764     3566766654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.68  E-value=3.1e-05  Score=64.85  Aligned_cols=37  Identities=11%  Similarity=0.078  Sum_probs=31.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCc----------EeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~----------~~d~D~l~  128 (212)
                      ++..|.|+|++||||||+++.|+..+|..          +++.|.++
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY   70 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence            36789999999999999999999988866          67887643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.68  E-value=4.2e-05  Score=59.16  Aligned_cols=41  Identities=12%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF  122 (212)
Q Consensus        80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~  122 (212)
                      +++.++.+..  .+.+|+|+|++|+|||++|+.+++..   +.+|+
T Consensus        13 ~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           13 YRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             HHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            4444444332  36789999999999999999999875   44554

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.66  E-value=2.6e-05  Score=65.23  Aligned_cols=33  Identities=30%  Similarity=0.320  Sum_probs=29.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..|+|+|+||+|||++++.+|+.++.+|+..+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~   76 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG   76 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence            467999999999999999999999998877543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.65  E-value=8.7e-05  Score=65.11  Aligned_cols=31  Identities=23%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-CCcEee
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD  123 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~d  123 (212)
                      +..|+|+|+||||||++++.+|+.+ +.+|+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~   76 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFS   76 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence            4789999999999999999999998 777753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.64  E-value=9.5e-05  Score=69.24  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.|+|+|+||+|||++++.+|..++.+|+..+
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is   81 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS   81 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence            467999999999999999999999999987654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.64  E-value=2.9e-05  Score=65.98  Aligned_cols=26  Identities=19%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.+|+|+|+||+|||++++.+|+.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999988

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.61  E-value=4e-05  Score=68.17  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..|+|+|+||||||++++.+|+.++.+|+..+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~  116 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS  116 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence            467999999999999999999999999887543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.61  E-value=3.1e-05  Score=61.83  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=24.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..|+|+|++||||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999999876

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.60  E-value=0.00013  Score=58.52  Aligned_cols=38  Identities=24%  Similarity=0.150  Sum_probs=30.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l~~~~  131 (212)
                      ..|+|+|++|+|||++++.++..+   +.  .+++...+..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL   97 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence            799999999999999999999877   33  446777766544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.57  E-value=5.2e-05  Score=65.27  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +..++|+|+|||||||+++.||..++..++..
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i   75 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISV   75 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            45599999999999999999999998766543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.57  E-value=5.5e-05  Score=63.00  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..++|+|++||||||+++.+|..++..++..+
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~   81 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   81 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            345999999999999999999999887766543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.57  E-value=5.5e-05  Score=67.57  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +..|+|+|+||+|||++++.+|+.++.+|+..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            57999999999999999999999999988754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.57  E-value=5.4e-05  Score=67.17  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+..|+|+|+||+|||++++.+|+.++++|+..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            367899999999999999999999999888744

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.56  E-value=0.00014  Score=57.77  Aligned_cols=38  Identities=18%  Similarity=-0.022  Sum_probs=31.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|..+.|+|++||||||+++.+.  .+...++.|.+....
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~g~~   45 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCRGLM   45 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHHHHh
Confidence            47889999999999999999875  467778888766443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.55  E-value=0.0001  Score=64.21  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCC--cEe
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRY--YYF  122 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~--~~~  122 (212)
                      +...+..++|+|+||+|||++++.+|+.++.  +|+
T Consensus        66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~  101 (368)
T 3uk6_A           66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT  101 (368)
T ss_dssp             TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc
Confidence            4444679999999999999999999999985  444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.54  E-value=0.00017  Score=71.66  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .++.|+|+||||||||++++.+|..+|++|+..+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            3678999999999999999999999999988654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.53  E-value=2.4e-05  Score=60.57  Aligned_cols=42  Identities=10%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      .+++.++.+..  .+..|+|+|++|+|||++|+.+++..+ +|+.
T Consensus        15 ~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~   56 (143)
T 3co5_A           15 EMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-PWVS   56 (143)
T ss_dssp             HHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred             HHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence            45555555443  357899999999999999999998776 5543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.52  E-value=6.3e-05  Score=64.97  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=29.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ...|+|+|++|+|||++++.+|+.++.+|+..+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            468999999999999999999999999887554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.51  E-value=0.0001  Score=68.08  Aligned_cols=45  Identities=18%  Similarity=0.078  Sum_probs=36.8

Q ss_pred             chHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        77 ~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ...|++.++.  +.+  .+++|+|+||+||||+++.||+.++.+|+..+
T Consensus        38 ~~~L~~~i~~--~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           38 GKPLPRAIEA--GHL--HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             TSHHHHHHHH--TCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             hHHHHHHHHc--CCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            3566666665  443  68999999999999999999999999887654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.50  E-value=0.00012  Score=57.59  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=22.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ...++|+|++|+|||++++.+++.+
T Consensus        38 ~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           38 IPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3459999999999999999999876

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.50  E-value=9.6e-05  Score=68.85  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ...++|+|+||+|||++++.+|+.+|++++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in  109 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN  109 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            478999999999999999999999999988653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.49  E-value=7e-05  Score=65.32  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=31.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l  127 (212)
                      ++..|.|+|++||||||+++.|+..++       +.++++|..
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            467899999999999999999999877       667777764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.47  E-value=0.00018  Score=62.59  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----------CCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----------g~~~~d~D  125 (212)
                      .+..++|+|++|+|||++++.+++.+           ++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            35689999999999999999999987           87776544

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.46  E-value=0.00071  Score=56.04  Aligned_cols=29  Identities=17%  Similarity=0.100  Sum_probs=24.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh--CCcEe
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL--RYYYF  122 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l--g~~~~  122 (212)
                      +=|.|-|+.||||||+++.|++.|  |+.++
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~   33 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI   33 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence            347788999999999999999988  55554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.44  E-value=0.0001  Score=62.53  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..|+|+|++||||||+++.|+..++..++..+
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~  105 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS  105 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence            345999999999999999999999887776543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.42  E-value=0.00023  Score=57.69  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~l~  128 (212)
                      ++..|.|+|++||||||+++.|+..+   +..  +++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            46789999999999999999999875   543  45667654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.41  E-value=0.0002  Score=61.78  Aligned_cols=38  Identities=24%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFE  130 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~l~~~  130 (212)
                      +..++|+|++|+||||+++.++..+   +.+  +++.+++..+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~   79 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   79 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence            5789999999999999999999987   554  5566665443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.41  E-value=0.00026  Score=64.90  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEe--ehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF--DSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~--d~D~l~~~~  131 (212)
                      .+..|+|+|+||||||++++.+|..+ +.+|+  +..+++...
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~  208 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW  208 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence            35789999999999999999999998 77765  444554433

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.40  E-value=0.00011  Score=64.41  Aligned_cols=29  Identities=28%  Similarity=0.299  Sum_probs=26.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ..++|+|+||+||||+++.+|..+++.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~   80 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIH   80 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            67999999999999999999999987653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.40  E-value=0.0002  Score=66.10  Aligned_cols=49  Identities=16%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehhHH
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDSL  127 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D~l  127 (212)
                      ..+++..+-+.. ..+.+++|+|+||+|||++++.||+.+          +.+++..|.-
T Consensus       187 ~~i~~l~~~l~r-~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~  245 (468)
T 3pxg_A          187 KEIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG  245 (468)
T ss_dssp             HHHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred             HHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence            444443333333 456799999999999999999999997          7778776643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.39  E-value=8.4e-05  Score=58.49  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l  127 (212)
                      ++..++|+|++|+||||+++.++..+   |  ..|++..++
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence            68899999999999999999999877   6  556665543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.33  E-value=0.00021  Score=71.09  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~--D~l~~~~~G  133 (212)
                      ++.|+|+||||||||.+|+++|..++.+|+..  .+++..+.|
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG  553 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG  553 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence            56799999999999999999999999999855  455554444

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.32  E-value=0.00013  Score=62.98  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---------CCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---------RYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---------g~~~~d~D  125 (212)
                      .+.+++|+|++|+|||++++.+++.+         ++.++..+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~   85 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN   85 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            46789999999999999999999988         77665433

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.31  E-value=9.4e-05  Score=63.95  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      +..++|+|+||+|||++++.+|+.++.+++.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            5799999999999999999999999987753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.30  E-value=0.00018  Score=59.81  Aligned_cols=31  Identities=13%  Similarity=0.073  Sum_probs=26.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-CCcEe
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF  122 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-g~~~~  122 (212)
                      ++..|+|.|++||||||+++.|++.+ ++.++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~   32 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA   32 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCeee
Confidence            36789999999999999999999999 55443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.29  E-value=0.00014  Score=62.09  Aligned_cols=30  Identities=23%  Similarity=0.165  Sum_probs=27.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      +..|+|+|++|+|||++++.+++.++.+++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            478999999999999999999999998875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.29  E-value=0.00029  Score=68.36  Aligned_cols=36  Identities=19%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehhH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS  126 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D~  126 (212)
                      ..+.+++|+|+||||||++++.||+.+          ++.++..|.
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            456789999999999999999999997          888887776

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.26  E-value=0.00037  Score=55.04  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+|++|+|||++++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            357999999999999999999998854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.25  E-value=0.00044  Score=59.93  Aligned_cols=30  Identities=17%  Similarity=-0.001  Sum_probs=25.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh----CCcEeeh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL----RYYYFDS  124 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l----g~~~~d~  124 (212)
                      .++|+|++|+||||+++.+++.+    ++.++..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i   79 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI   79 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence            89999999999999999999988    5555543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.25  E-value=7.1e-05  Score=60.12  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=22.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .|+|+|++||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.24  E-value=0.0002  Score=57.98  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=24.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcE
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYY  121 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~  121 (212)
                      .+.|+|++||||||+.+.|+..+++.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~   28 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence            688999999999999999999987554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.23  E-value=0.00031  Score=60.40  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh------CCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL------RYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l------g~~~~d~D  125 (212)
                      .+..++|+|++|+||||+++.+++.+      ++.++..+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            36789999999999999999999987      76665443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.23  E-value=0.00025  Score=66.71  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..|+|+|+||||||++++.||..++.+|+..+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~   96 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   96 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            456999999999999999999999988876543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.22  E-value=0.00022  Score=59.43  Aligned_cols=30  Identities=13%  Similarity=0.152  Sum_probs=26.2

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +.++++.|+|+||+||||||+.+.|++.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456789999999999999999999998764

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.22  E-value=0.0039  Score=51.08  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=23.3

Q ss_pred             EEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227           96 VFLVGMNNAIKTHLGKFLADAL---RYYYF  122 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~l---g~~~~  122 (212)
                      |.|-|+.||||||.++.|++.|   |++++
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~   32 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI   32 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            6778999999999999999877   66665

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.20  E-value=0.00023  Score=66.53  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .+..|+|+|+||||||++++.+|..++.+|+..+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            4678999999999999999999999998887543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.20  E-value=0.00052  Score=60.01  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=32.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC----C--cEeehhHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR----Y--YYFDSDSLVFEAA  132 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg----~--~~~d~D~l~~~~~  132 (212)
                      +..++|+|++|+|||++++.+|..+.    .  .|+...+++.+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~  197 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK  197 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence            58999999999999999999997554    4  4578887776554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.19  E-value=0.00028  Score=59.82  Aligned_cols=24  Identities=38%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..++|+|+||||||++++.||+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            479999999999999999999987

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.19  E-value=0.0002  Score=58.23  Aligned_cols=26  Identities=31%  Similarity=0.156  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +++.+.|+||+||||||+.+.|+..+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            36789999999999999999998765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.19  E-value=0.00031  Score=57.10  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=23.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999999999876

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.18  E-value=0.00044  Score=57.83  Aligned_cols=26  Identities=15%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +..|+|+|++|+|||++++.+++.++
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            57899999999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.15  E-value=0.00019  Score=59.14  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=17.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH-HHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA-DAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA-~~l  117 (212)
                      +|..|.|+|++||||||+.+.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            47889999999999999999999 765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.10  E-value=0.00063  Score=58.43  Aligned_cols=33  Identities=12%  Similarity=-0.003  Sum_probs=27.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      +..+++.|+||+|||++++.+|+.++..++..+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            355677788999999999999999998887654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.09  E-value=0.00026  Score=59.96  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=31.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      .+..|+|+|++|+||||++..|+++.+ .++..|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~   68 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD   68 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence            467899999999999999999999866 888888753

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.09  E-value=0.00042  Score=59.40  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=30.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      ..|.|+|++||||||+++.|++.+|++++...+.+
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~   36 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHH
Confidence            36889999999999999999999999998876543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00041  Score=61.77  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=24.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++.+++|+|+||+|||++++.+++.+
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999988

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.07  E-value=0.00079  Score=59.96  Aligned_cols=35  Identities=14%  Similarity=0.136  Sum_probs=29.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~  128 (212)
                      ..|.|+|++||||||+++.|+..++       ..++..|.+.
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            4799999999999999999999875       4567888753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.04  E-value=0.00035  Score=57.72  Aligned_cols=26  Identities=19%  Similarity=0.115  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            47889999999999999999999866

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.03  E-value=0.00043  Score=58.86  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=27.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      ++..++|+||||+||||++..||+.++-..+.
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            35679999999999999999999998755554

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.02  E-value=0.00084  Score=61.46  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CC--cEeehhHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RY--YYFDSDSLVF  129 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~--~~~d~D~l~~  129 (212)
                      +..++|+|++|+||||+++.++..+     +.  .+++...+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~  173 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            5789999999999999999999977     54  4556666544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.02  E-value=0.00035  Score=61.03  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=30.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEe-ehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYF-DSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~-d~D~l~  128 (212)
                      ++..|.|+|++||||||+++.|+..++       ...+ ..|.++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            467899999999999999999998875       3445 888764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.01  E-value=0.00065  Score=57.20  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=21.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++|+|++|+|||++++.+|+.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            59999999999999999999986

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.93  E-value=0.00085  Score=58.42  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=21.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ++|+|++|+||||+++.+|+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.92  E-value=0.00059  Score=57.06  Aligned_cols=27  Identities=22%  Similarity=0.139  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +|..++|+||+||||||+.+.|+..+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            588999999999999999999998764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.92  E-value=0.00051  Score=55.30  Aligned_cols=28  Identities=21%  Similarity=0.007  Sum_probs=24.2

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +.-++..+.|+|++||||||+++.|+..
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3345889999999999999999999874

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.90  E-value=0.0007  Score=54.21  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=27.8

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehh
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD  125 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D  125 (212)
                      ..+|..+.|+|++||||||+++.++..+     .+.|++.+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            3467899999999999999999998543     34455544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.88  E-value=0.00069  Score=54.07  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|+.||||||+.+.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999999999887

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.87  E-value=0.00084  Score=60.98  Aligned_cols=32  Identities=19%  Similarity=0.052  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      ++..|.|+|++||||||+++.|+..++..++.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            57899999999999999999999998877765

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.82  E-value=0.00089  Score=56.84  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=30.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      +..++|+|++|+|||++.+.+++..++.|++.+..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~   65 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL   65 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence            37899999999999999999999988888887653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.80  E-value=0.0011  Score=56.84  Aligned_cols=25  Identities=20%  Similarity=0.093  Sum_probs=22.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..++|+|+||+||||+++.+|+.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4499999999999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.80  E-value=0.00083  Score=59.19  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l  127 (212)
                      ++..|.|+|++||||||+++.|+..+.       +.++..|..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            478899999999999999999998763       456666654

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.78  E-value=0.0016  Score=54.91  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=22.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..++|+|++|+|||++++.+++.+.
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhc
Confidence            4699999999999999999999863

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.77  E-value=0.0013  Score=64.91  Aligned_cols=34  Identities=18%  Similarity=0.092  Sum_probs=28.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D  125 (212)
                      .+.+++|+|+||+|||++++.||+.+          +.+++..|
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  233 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ  233 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence            45689999999999999999999987          77666443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.76  E-value=0.0009  Score=64.61  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=27.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +++|+|++|+|||++++.||+.++.+++..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i  519 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence            799999999999999999999999877643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.76  E-value=0.0019  Score=62.28  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+++..+-+.. -.+.+++|+|+||+|||++++.||+.+
T Consensus       193 ~~i~~l~~~l~~-~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          193 KELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             HHHHHHHHHHTS-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            344443333333 357899999999999999999999987

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.75  E-value=0.0013  Score=57.13  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+++.+..+..  .+.+|+|+|++|+|||++|+.+++..
T Consensus        13 ~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           13 HLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             HHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhC
Confidence            34444555433  36789999999999999999999865

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.74  E-value=0.0021  Score=55.44  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+|++|+|||++++.+|+.+++
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999999875

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.74  E-value=0.0011  Score=55.48  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=24.3

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      |+|.-|+|.|++||||||+++.|++.+
T Consensus         1 m~g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            1 MRSKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             -CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999999887

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.74  E-value=0.0017  Score=54.67  Aligned_cols=38  Identities=13%  Similarity=0.092  Sum_probs=31.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC---CcEeehhHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFE  130 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg---~~~~d~D~l~~~  130 (212)
                      ...|.|+|+|||||+|+++.+.+.+|   ++.+..-+.+++
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~   51 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE   51 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence            46899999999999999999999885   677887776653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.72  E-value=0.00099  Score=54.57  Aligned_cols=25  Identities=32%  Similarity=0.304  Sum_probs=22.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      |..+.|+|++||||||+.+.|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            4578999999999999999999876

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.70  E-value=0.0005  Score=59.10  Aligned_cols=26  Identities=23%  Similarity=0.141  Sum_probs=23.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ...|+|+|+||+|||++++.+++.++
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34699999999999999999999987

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.70  E-value=0.0011  Score=54.64  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.|+|+||+|+|||||.+.|.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999998765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.70  E-value=0.0012  Score=55.48  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +|.-|+|.|++||||||+++.|++.++.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5789999999999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.69  E-value=0.00083  Score=56.58  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999999997543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.69  E-value=0.0012  Score=52.83  Aligned_cols=38  Identities=18%  Similarity=0.045  Sum_probs=29.8

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~D~  126 (212)
                      +..++..++|+|++||||||+++.+|...+  ..|++.+.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            344588999999999999999999987444  45666654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.68  E-value=0.0011  Score=58.60  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            57899999999999999999999876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.65  E-value=0.00092  Score=55.83  Aligned_cols=26  Identities=27%  Similarity=0.199  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47889999999999999999998543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.62  E-value=0.0014  Score=55.53  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ++..|+|.|++||||||+++.|++.++.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5788999999999999999999997654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.59  E-value=0.0013  Score=53.31  Aligned_cols=28  Identities=21%  Similarity=0.084  Sum_probs=24.5

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..++..+.|+|++||||||+++.+|..
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3446889999999999999999999983

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.0025  Score=53.67  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++|+|++|+|||++++.+|+.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999986

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.0032  Score=54.31  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=21.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++|+|++|+||||+++.+|..+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999999965

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.58  E-value=0.0011  Score=55.90  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999999754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.52  E-value=0.0015  Score=55.38  Aligned_cols=25  Identities=48%  Similarity=0.557  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999863

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.51  E-value=0.0017  Score=55.65  Aligned_cols=28  Identities=14%  Similarity=0.074  Sum_probs=24.3

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .-++..+.|+|++||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            3357899999999999999999998754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.51  E-value=0.0017  Score=57.04  Aligned_cols=26  Identities=35%  Similarity=0.323  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|.|+|++||||||+.+.||..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46799999999999999999999765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.51  E-value=0.0013  Score=56.39  Aligned_cols=26  Identities=12%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.51  E-value=0.0013  Score=56.61  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.50  E-value=0.0013  Score=55.45  Aligned_cols=26  Identities=35%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.50  E-value=0.0011  Score=62.24  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .+.+|+|+|+||+|||++++.||..++
T Consensus        40 ~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           40 SGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            367999999999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.49  E-value=0.0013  Score=55.96  Aligned_cols=26  Identities=27%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999997543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.49  E-value=0.0013  Score=55.79  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999997543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.47  E-value=0.0014  Score=54.86  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.47  E-value=0.0014  Score=56.90  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999997543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.47  E-value=0.0014  Score=55.38  Aligned_cols=25  Identities=12%  Similarity=0.127  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.46  E-value=0.0019  Score=56.64  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.||..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.46  E-value=0.0017  Score=55.73  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.45  E-value=0.004  Score=52.75  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=26.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC--cEeehh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY--YYFDSD  125 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~--~~~d~D  125 (212)
                      ..++|+|++|+|||++.+.+++.++.  .|++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            58999999999999999999988753  456654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.45  E-value=0.002  Score=54.82  Aligned_cols=29  Identities=10%  Similarity=-0.001  Sum_probs=24.6

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.-+|..++|+|+||+||||+++.||..+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34458899999999999999999998654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.45  E-value=0.0026  Score=55.59  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             CCcEEEE--EccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFL--VGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~L--vG~~GsGKTTvak~LA~~l  117 (212)
                      .+..++|  +|++|+|||++++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4568888  9999999999999999876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.44  E-value=0.0012  Score=54.54  Aligned_cols=27  Identities=15%  Similarity=0.055  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +|..|.|.|++||||||+++.|+...|
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g   45 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKYKN   45 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccC
Confidence            578899999999999999999998734

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.43  E-value=0.0015  Score=56.22  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999999998543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.42  E-value=0.0022  Score=55.99  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=24.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ...|+|+||||+|||.++++||..+++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            567999999999999999999997644

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.42  E-value=0.0015  Score=54.19  Aligned_cols=25  Identities=32%  Similarity=0.154  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999999854

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.41  E-value=0.0016  Score=55.75  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999997543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.41  E-value=0.0023  Score=51.88  Aligned_cols=38  Identities=16%  Similarity=-0.004  Sum_probs=28.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      +..+|..++|+|+||+||||++..+|...     +..|++.+.
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            44468899999999999999998887542     455666553

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.41  E-value=0.0016  Score=56.14  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999997543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.40  E-value=0.0025  Score=51.61  Aligned_cols=26  Identities=15%  Similarity=0.029  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..++++|+||+||||++..++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999996666543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.38  E-value=0.0015  Score=54.57  Aligned_cols=26  Identities=38%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47889999999999999999997543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.38  E-value=0.0017  Score=57.52  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=25.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..+.|+|++||||||+.+.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999887643

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.36  E-value=0.0024  Score=61.91  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=27.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh---CCcE--eehhHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV  128 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~--~d~D~l~  128 (212)
                      +++|+|++|+|||++|+.||+.+   +.+|  +|+..+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~  561 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM  561 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence            69999999999999999999987   4444  4554443

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.35  E-value=0.0018  Score=56.21  Aligned_cols=26  Identities=38%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999998543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.35  E-value=0.0018  Score=55.50  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.35  E-value=0.0018  Score=55.22  Aligned_cols=26  Identities=35%  Similarity=0.301  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            47889999999999999999997543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.35  E-value=0.0026  Score=53.93  Aligned_cols=28  Identities=32%  Similarity=0.188  Sum_probs=24.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..++..+.|+|++||||||+++.++..
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3446899999999999999999999853

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.33  E-value=0.0019  Score=55.34  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999997543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.30  E-value=0.0018  Score=58.28  Aligned_cols=36  Identities=28%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhC--CcEeeh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS  124 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg--~~~~d~  124 (212)
                      +..++..++|+|+||||||+++..+|...|  +.|++.
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            455677889999999999999999997654  457777

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.30  E-value=0.0025  Score=56.66  Aligned_cols=26  Identities=35%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..|.|+|++||||||+.+.||..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.26  E-value=0.0021  Score=54.80  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.26  E-value=0.0058  Score=49.16  Aligned_cols=26  Identities=27%  Similarity=0.115  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +...|+|+|.+|+||||+...|+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.25  E-value=0.0036  Score=49.04  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ...+|+|++||||||+.++|+-.++
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            3778999999999999999988775

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.24  E-value=0.0031  Score=55.07  Aligned_cols=35  Identities=23%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~  126 (212)
                      ++..|.|+|++|+||||++..||..+    |  +.+++.|.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            47799999999999999999998644    4  35567775

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.22  E-value=0.0031  Score=55.57  Aligned_cols=34  Identities=24%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~  126 (212)
                      +..|.|+|++||||||++..||..+   |  +.+++.|.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            5689999999999999999999765   3  34556664

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.21  E-value=0.0074  Score=52.73  Aligned_cols=28  Identities=11%  Similarity=-0.008  Sum_probs=25.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +..++|+|++|+|||++++.+|+.+.+.
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            4569999999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.21  E-value=0.0044  Score=49.73  Aligned_cols=26  Identities=19%  Similarity=0.102  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +...|+|+|.+|+||||+...|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.19  E-value=0.0028  Score=53.66  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.|+|++||||||+.+.|+-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            678899999999999999998543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.19  E-value=0.0028  Score=57.38  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+||+||||||+.+.||-.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            4788999999999999999999853

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.18  E-value=0.005  Score=60.63  Aligned_cols=29  Identities=31%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYF  122 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~~~  122 (212)
                      .+++|+|++|+|||++++.||+.+   +.+|+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i  620 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI  620 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence            489999999999999999999988   55554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.17  E-value=0.0036  Score=52.03  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~  129 (212)
                      .+.-|+|+|++|+||||++..|.+ .|+.++.=|.+.-
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i   51 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDDVIDL   51 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEE
Confidence            478899999999999999999988 4888887666543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.16  E-value=0.0033  Score=56.73  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|.|+|++||||||+.+.||..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            46789999999999999999999765

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.15  E-value=0.0026  Score=60.34  Aligned_cols=27  Identities=30%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+|++||||||+++.||..++.
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            579999999999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.12  E-value=0.004  Score=54.17  Aligned_cols=29  Identities=21%  Similarity=0.145  Sum_probs=24.6

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ...+.+..+.|+|++|+||||+.+.|+ .+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            344667899999999999999999998 44

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.11  E-value=0.0035  Score=46.67  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+++|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.09  E-value=0.0034  Score=56.65  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999999853

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.09  E-value=0.0033  Score=57.32  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.||-.+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            47889999999999999999998543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.09  E-value=0.0019  Score=52.24  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..|.|+|++||||||+.+.|+..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.07  E-value=0.0035  Score=48.52  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .++..+|+|+|++|+||||+.+.|+.
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34557899999999999999999975

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.07  E-value=0.0035  Score=56.58  Aligned_cols=25  Identities=32%  Similarity=0.235  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCC
Confidence            4788999999999999999999854

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.06  E-value=0.0035  Score=56.61  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            4788999999999999999999854

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.06  E-value=0.0039  Score=46.59  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +.-+|+|+|.+|+||||+...+..
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999998875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.03  E-value=0.0032  Score=55.01  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999999754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.02  E-value=0.0028  Score=52.19  Aligned_cols=28  Identities=14%  Similarity=0.224  Sum_probs=23.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhCC--cEeeh
Q 028227           96 VFLVGMNNAIKTHLGKFLADALRY--YYFDS  124 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg~--~~~d~  124 (212)
                      |+++|.+|||||++|..||.. +.  .|+++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999977 64  35555

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.01  E-value=0.0038  Score=56.47  Aligned_cols=25  Identities=24%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcC
Confidence            4788999999999999999999854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.01  E-value=0.0039  Score=56.57  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4788999999999999999999853

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.00  E-value=0.0042  Score=55.25  Aligned_cols=28  Identities=21%  Similarity=0.042  Sum_probs=24.8

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..++..+.|+|++||||||+++.++...
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.99  E-value=0.004  Score=47.92  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ...|+|+|++|+||||+.+.|+.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999999974

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.99  E-value=0.0028  Score=56.57  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..+.|+|++||||||+.+.|+..+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.98  E-value=0.0033  Score=54.05  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      |..+.|+|++||||||+.+.|+-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999999754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.98  E-value=0.0044  Score=55.68  Aligned_cols=26  Identities=15%  Similarity=0.102  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|+|+|++||||||+.+.|+..+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            47789999999999999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.97  E-value=0.0081  Score=53.91  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=34.3

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeeh----hHHHHHHhC
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDS----DSLVFEAAG  133 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~----D~l~~~~~G  133 (212)
                      +..++..++|.|+||+||||++..+|...     .+.|+|+    |....+..|
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g  112 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG  112 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcC
Confidence            45578899999999999999999998643     4667887    455444444

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.92  E-value=0.0054  Score=49.83  Aligned_cols=24  Identities=25%  Similarity=0.122  Sum_probs=21.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..|.|+|++||||||+...|+..+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            478899999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.91  E-value=0.0024  Score=56.37  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            47899999999999999999997544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.90  E-value=0.005  Score=46.01  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=21.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+|+++|.+|+||||+...|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.90  E-value=0.0045  Score=56.45  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.||-
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            478999999999999999999984

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.89  E-value=0.0059  Score=54.52  Aligned_cols=38  Identities=13%  Similarity=0.139  Sum_probs=29.9

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      +..++..+.|+|+||+||||++..++...     .+.|++++.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            55568999999999999999999998543     356777543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.89  E-value=0.003  Score=56.77  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcC
Confidence            4688999999999999999999853

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.86  E-value=0.0052  Score=58.14  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|.|+|++||||||+.+.||..+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHh
Confidence            46789999999999999999999754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.86  E-value=0.0049  Score=55.96  Aligned_cols=25  Identities=20%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcC
Confidence            4789999999999999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.85  E-value=0.0042  Score=53.87  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +.+..+.|+|++||||||+.+.|+.
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcc
Confidence            4577899999999999999999964

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.85  E-value=0.0053  Score=48.63  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..|.|+|++||||||+.+.|+..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            57899999999999999999864

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.84  E-value=0.0026  Score=60.75  Aligned_cols=30  Identities=10%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +|+|+|+||+|||++|+.+|+.++..++..
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~  358 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYTT  358 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECCC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceecC
Confidence            899999999999999999999887665543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.84  E-value=0.0054  Score=47.80  Aligned_cols=24  Identities=38%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..|+|+|.+|+||||+.+.|+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.82  E-value=0.0055  Score=55.40  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.9

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+++..+.|+|++|+||||+.+.|+.
T Consensus       212 ~~~G~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          212 ALTGRISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             HHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred             hcCCCEEEEECCCCccHHHHHHHHhc
Confidence            34678999999999999999999974

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.0045  Score=57.47  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh----C-C-cEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R-Y-YYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l----g-~-~~~d~D  125 (212)
                      +|..+.|+|++||||||+.|.|+..+    | - .++|.|
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~  176 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD  176 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence            58899999999999999999998643    5 4 556654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.80  E-value=0.0036  Score=57.66  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      ..|.|+|++|+||||++..||..+     ...++|+|.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            589999999999999999999865     356678774

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.80  E-value=0.0059  Score=45.85  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+.+.|..
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            345899999999999999999975

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.79  E-value=0.006  Score=48.33  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+|.|+|++|+||||+.+.|+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.74  E-value=0.0067  Score=45.37  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+|+++|.+|+||||+...+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.73  E-value=0.0069  Score=45.49  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .-+|+|+|.+|+||||+.+.|..
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35899999999999999999975

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.72  E-value=0.009  Score=63.67  Aligned_cols=62  Identities=16%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCC-----cEeehh----HHHHHHhCCCchhhhhhhh---chHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSD----SLVFEAAGGESAAKAFRES---DEKGYQQAE  153 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~-----~~~d~D----~l~~~~~G~~si~ei~~~~---Ge~~fr~~E  153 (212)
                      .++..+.|+|+||||||++|+.++..-..     .|++.+    +++.+.+| -++.+++.+.   +|+.++...
T Consensus      1080 p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G-~d~~~~~~~~~~~~e~~l~~~~ 1153 (1706)
T 3cmw_A         1080 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG-VDIDNLLCSQPDTGEQALEICD 1153 (1706)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTT-CCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhC-CCHHHHhhccccchHHHHHHHH
Confidence            36777999999999999999999864432     377764    45555667 5666666441   455554433

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.71  E-value=0.003  Score=56.71  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.||-.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4788999999999999999999853

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.71  E-value=0.009  Score=49.23  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh--C--CcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL--R--YYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l--g--~~~~d~D  125 (212)
                      +...++++|.+|+||||++..||..+  |  ...+|.|
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45678899999999999999999765  4  3456766

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.70  E-value=0.0034  Score=49.74  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ++..|.|+|++||||||+.+.|+.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            467899999999999999998863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.70  E-value=0.0078  Score=48.72  Aligned_cols=24  Identities=29%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.|+|++||||||+.+.|...+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            578999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.69  E-value=0.0071  Score=54.28  Aligned_cols=26  Identities=19%  Similarity=0.107  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|+|+|++||||||+.+.++..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            35689999999999999999998765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.67  E-value=0.0069  Score=52.07  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      -++.|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998755

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.63  E-value=0.0083  Score=53.07  Aligned_cols=34  Identities=18%  Similarity=0.075  Sum_probs=27.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D  125 (212)
                      +...|.|+|.+|+||||+...|+..+   |  +.+++.|
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            34689999999999999999999875   3  3456666

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.63  E-value=0.0058  Score=47.80  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+.+.++.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.62  E-value=0.0085  Score=48.48  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=23.0

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +..+|..++|.|.||+|||+++-.+|
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            56678999999999999999998875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.60  E-value=0.0077  Score=52.54  Aligned_cols=38  Identities=21%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----------CCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----------g~~~~d~D~  126 (212)
                      +..++..+.|+|+||+|||+++..+|...           ++.|++++.
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            44467899999999999999999998753           245777654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.59  E-value=0.0064  Score=45.66  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .-+|+|+|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.56  E-value=0.0086  Score=52.87  Aligned_cols=34  Identities=24%  Similarity=0.141  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~  126 (212)
                      +..|.|+|++|+||||++..||..+   |  .-++|.|-
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5689999999999999999998755   3  34567664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.55  E-value=0.0076  Score=52.61  Aligned_cols=33  Identities=24%  Similarity=0.147  Sum_probs=27.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D  125 (212)
                      +..|.++|++|+||||++..||..+   |  ..++|.|
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6689999999999999999999765   3  4566777

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.55  E-value=0.0072  Score=52.28  Aligned_cols=28  Identities=11%  Similarity=-0.085  Sum_probs=24.3

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..++..+.|+|+||+|||+++..+|..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4456789999999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.01  Score=46.15  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|++|+||||+...|...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.49  E-value=0.0096  Score=52.69  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=25.8

Q ss_pred             HHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           85 ADISTEL-KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        85 ~~~~~~l-~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.-.. ++..+.|+|+|||||||+.+.|+..+
T Consensus        46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            3443333 47889999999999999999998654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.48  E-value=0.011  Score=45.14  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            357899999999999999999964

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.47  E-value=0.0091  Score=45.26  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+.+.|..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            5899999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.45  E-value=0.0056  Score=54.09  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +..+.|+|++||||||+.+.|+..+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.44  E-value=0.0094  Score=45.02  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA  114 (212)
                      -+|+|+|.+|+||||+...|.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999985

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.44  E-value=0.0084  Score=56.49  Aligned_cols=25  Identities=36%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999853

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.44  E-value=0.01  Score=44.70  Aligned_cols=23  Identities=26%  Similarity=0.144  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      -+|+|+|.+|+||||+.+.|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            57999999999999999999753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.43  E-value=0.01  Score=44.61  Aligned_cols=24  Identities=17%  Similarity=0.115  Sum_probs=21.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .-+|+|+|.+|+||||+.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            358999999999999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.43  E-value=0.0076  Score=46.80  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ++..+|+++|.+|+||||+...|+..
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            34568999999999999999999854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.43  E-value=0.0097  Score=44.72  Aligned_cols=22  Identities=18%  Similarity=0.089  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999974

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.42  E-value=0.011  Score=51.47  Aligned_cols=34  Identities=26%  Similarity=0.192  Sum_probs=26.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D  125 (212)
                      ++..|.++|++|+||||+++.||..+   +  ..++|.|
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d  135 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            46789999999999999999998654   3  3445665

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.41  E-value=0.011  Score=47.02  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+|+|+|++|+||||+...|....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4689999999999999999998643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.40  E-value=0.0086  Score=55.42  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=27.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~  126 (212)
                      +..|+++|++|+||||++..||..+   |.  .+++.|.
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            6789999999999999999999655   43  3467773

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.40  E-value=0.0092  Score=44.96  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA  114 (212)
                      -+|+|+|.+|+||||+.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            479999999999999999884

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.39  E-value=0.012  Score=44.46  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999964

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.37  E-value=0.032  Score=51.15  Aligned_cols=27  Identities=11%  Similarity=-0.027  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ++..|+|+|++||||||+.+.|+..+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            567899999999999999999998764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.36  E-value=0.01  Score=53.52  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~  126 (212)
                      +..++..+.|+|+|||||||++..++..+   |  +.|+|.+.
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            55678899999999999999999998653   3  34676644

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.36  E-value=0.0089  Score=56.40  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.36  E-value=0.011  Score=44.94  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999999865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.36  E-value=0.0088  Score=45.81  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999874

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.35  E-value=0.011  Score=46.67  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+.+.+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999986

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.35  E-value=0.011  Score=44.42  Aligned_cols=22  Identities=18%  Similarity=0.230  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4799999999999999999974

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.35  E-value=0.011  Score=44.95  Aligned_cols=23  Identities=22%  Similarity=0.095  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35899999999999999999974

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.34  E-value=0.011  Score=52.27  Aligned_cols=28  Identities=18%  Similarity=-0.073  Sum_probs=24.2

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..++..+.|+|+||+|||+++..+|..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3445788999999999999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.33  E-value=0.01  Score=45.04  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+|+|+|.+|+||||+.+.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.31  E-value=0.012  Score=44.12  Aligned_cols=23  Identities=17%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            35899999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.29  E-value=0.012  Score=45.13  Aligned_cols=22  Identities=18%  Similarity=0.096  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.29  E-value=0.011  Score=45.20  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=21.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+.+.|..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Confidence            446899999999999999999975

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.27  E-value=0.012  Score=54.26  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=28.6

Q ss_pred             HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        84 ~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +..+-+--+|..+.|+|++||||||+.+.|+....
T Consensus       148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            34443444689999999999999999999998764

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.27  E-value=0.014  Score=49.30  Aligned_cols=26  Identities=27%  Similarity=-0.040  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..++++|+||+||||.+..++..+
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            47789999999999999998888665

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.27  E-value=0.012  Score=52.48  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=28.1

Q ss_pred             HHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        85 ~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..+-+--+|..+.|+|++||||||+.+.|+..+.
T Consensus        63 d~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           63 DGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3443444689999999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.26  E-value=0.014  Score=43.91  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|+|+|.+|+||||+...+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.26  E-value=0.0086  Score=56.50  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            47899999999999999999998654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.24  E-value=0.011  Score=44.84  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=19.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA  114 (212)
                      .+|+|+|.+|+||||+...|.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999985

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.23  E-value=0.0096  Score=45.16  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            446899999999999999999974

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.23  E-value=0.013  Score=44.42  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+|+|+|.+|+||||+.+.|...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999999753

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.21  E-value=0.014  Score=52.54  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      +..++..++|.|+||+|||+++..+|...     .+.|+|++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            55568899999999999999999988653     356777654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.19  E-value=0.012  Score=49.54  Aligned_cols=24  Identities=33%  Similarity=0.184  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|.|+|++||||||+...|..
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999999999964

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.19  E-value=0.014  Score=52.08  Aligned_cols=36  Identities=17%  Similarity=0.140  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      .+..|+|+|++|+||||++..|.++ |+.++.-|...
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~  178 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE  178 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence            4788999999999999999999875 88888655543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.18  E-value=0.013  Score=44.67  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .-+|+|+|.+|+||||+...|..
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.17  E-value=0.014  Score=44.83  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      -+|+|+|.+|+||||+...|...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.17  E-value=0.014  Score=46.40  Aligned_cols=29  Identities=28%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             HHhcccCCcEEEEEccCCCCHHHHHHHHH
Q 028227           86 DISTELKGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        86 ~~~~~l~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      .+.-..+..+|+|+|++|+||||+.+.+.
T Consensus        18 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           18 FLGLYKKTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             HHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             HhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence            33333456789999999999999999986

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.14  E-value=0.012  Score=53.68  Aligned_cols=27  Identities=26%  Similarity=0.107  Sum_probs=22.9

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..++..+.|+|++||||||+++.|+-
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence            334678999999999999999998763

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.11  E-value=0.014  Score=54.34  Aligned_cols=35  Identities=29%  Similarity=0.242  Sum_probs=28.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l  127 (212)
                      +..|+++|++|+||||++..||..+   |.  .++++|.+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            6789999999999999999999755   43  35677753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.11  E-value=0.014  Score=44.82  Aligned_cols=26  Identities=19%  Similarity=0.129  Sum_probs=22.2

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.11  E-value=0.012  Score=54.68  Aligned_cols=35  Identities=14%  Similarity=0.143  Sum_probs=26.4

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHH--HHHh----CCcEeehh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFL--ADAL----RYYYFDSD  125 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~L--A~~l----g~~~~d~D  125 (212)
                      .+|..+.|+|++||||||+++.+  +-.+    |..+++..
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~   77 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   77 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            35899999999999999999994  3322    45566553

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.10  E-value=0.015  Score=45.12  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.10  E-value=0.016  Score=44.58  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .-+|+|+|.+|+||||+...|...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            458999999999999999999764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.09  E-value=0.014  Score=45.30  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+.+.|...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999999763

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.09  E-value=0.013  Score=45.02  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+...|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999874

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.08  E-value=0.018  Score=50.20  Aligned_cols=28  Identities=14%  Similarity=-0.016  Sum_probs=25.4

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+|..++|.|.||+||||++..+|..
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            6777899999999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.08  E-value=0.015  Score=44.74  Aligned_cols=22  Identities=14%  Similarity=0.160  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+.+.|..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999999975

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.04  E-value=0.016  Score=44.71  Aligned_cols=24  Identities=17%  Similarity=0.079  Sum_probs=20.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+|+|+|.+|+||||+.+.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            589999999999999998886543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.04  E-value=0.015  Score=45.66  Aligned_cols=28  Identities=18%  Similarity=-0.032  Sum_probs=23.0

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+.-+|+|+|.+|+||||+...+...
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3445578999999999999999888653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.02  E-value=0.014  Score=55.07  Aligned_cols=25  Identities=40%  Similarity=0.420  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999999854

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.02  E-value=0.016  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            35899999999999999999975

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.02  E-value=0.015  Score=45.43  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=21.7

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh
Confidence            3456899999999999999999975

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.00  E-value=0.016  Score=44.12  Aligned_cols=23  Identities=35%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35899999999999999999975

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.00  E-value=0.016  Score=45.14  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            35899999999999999999975

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.99  E-value=0.019  Score=43.79  Aligned_cols=24  Identities=21%  Similarity=-0.016  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            356899999999999999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.96  E-value=0.0094  Score=56.01  Aligned_cols=26  Identities=19%  Similarity=0.066  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++.+|+|+|++||||||+.+.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            36789999999999999999998655

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.95  E-value=0.012  Score=45.20  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +..+|+|+|.+|+||||+...+.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            35789999999999999999885

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.95  E-value=0.018  Score=44.41  Aligned_cols=24  Identities=29%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            458999999999999999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.89  E-value=0.013  Score=55.37  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999999854

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.89  E-value=0.011  Score=56.16  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999999997543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.87  E-value=0.02  Score=44.93  Aligned_cols=25  Identities=12%  Similarity=0.029  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+|+|+|.+|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3568999999999999999999753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.86  E-value=0.019  Score=44.54  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=20.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            5899999999999999999975

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.83  E-value=0.018  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.384  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+++|.+|+||||+...+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            357899999999999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.82  E-value=0.02  Score=50.44  Aligned_cols=26  Identities=15%  Similarity=0.043  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..|.|+|++|+||||+...|+..+
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.82  E-value=0.02  Score=44.71  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=21.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      -+|+|+|.+|+||||+...|....
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            589999999999999999998654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.82  E-value=0.017  Score=47.39  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.80  E-value=0.013  Score=55.25  Aligned_cols=25  Identities=32%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5788999999999999999999753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.80  E-value=0.013  Score=44.80  Aligned_cols=25  Identities=12%  Similarity=0.005  Sum_probs=21.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +.-+|+|+|.+|+||||+...+...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999763

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.80  E-value=0.018  Score=44.12  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35899999999999999999974

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.76  E-value=0.02  Score=44.50  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+|+|+|.+|+||||+...|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999999753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.76  E-value=0.021  Score=44.14  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999999753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.76  E-value=0.02  Score=53.28  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +..+|..+.|+|++||||||+++.++..+
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34468899999999999999999998653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.75  E-value=0.02  Score=44.83  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            358999999999999999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.75  E-value=0.022  Score=44.20  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=20.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHc
Confidence            46899999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.73  E-value=0.019  Score=44.74  Aligned_cols=24  Identities=42%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            356899999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.72  E-value=0.018  Score=45.44  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999999853

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.70  E-value=0.024  Score=51.69  Aligned_cols=28  Identities=11%  Similarity=0.036  Sum_probs=24.6

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+|..++|.|+||+||||++..+|..
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            5567889999999999999999998863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.70  E-value=0.0059  Score=53.95  Aligned_cols=26  Identities=12%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+++..+.|+|++|+||||+.+.|+.
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcc
Confidence            34688999999999999999999963

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=94.69  E-value=0.0092  Score=53.50  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=25.4

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .++.-|.|-|+.||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34678899999999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.69  E-value=0.021  Score=44.75  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            36899999999999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=94.69  E-value=0.022  Score=50.50  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=22.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +..|.|+|+||+||||+-..|...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.68  E-value=0.0093  Score=56.29  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999999997543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.68  E-value=0.018  Score=55.14  Aligned_cols=25  Identities=40%  Similarity=0.420  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999999854

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.68  E-value=0.022  Score=44.34  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.68  E-value=0.022  Score=45.19  Aligned_cols=24  Identities=29%  Similarity=0.253  Sum_probs=21.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.68  E-value=0.028  Score=52.71  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        83 ~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+..+.+..+|.++.|+|++|+||||++..|+...
T Consensus       141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            35667788899999999999999999999997643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.67  E-value=0.022  Score=44.83  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=20.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999974

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.67  E-value=0.022  Score=44.25  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            357899999999999999999974

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.019  Score=55.20  Aligned_cols=25  Identities=36%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            5889999999999999999999854

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.67  E-value=0.019  Score=44.44  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            357899999999999999999974

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.66  E-value=0.022  Score=44.64  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...+...
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            468999999999999999988753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.65  E-value=0.022  Score=44.44  Aligned_cols=24  Identities=21%  Similarity=0.151  Sum_probs=21.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .-+|+|+|.+|+||||+...+...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.64  E-value=0.021  Score=44.83  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.63  E-value=0.016  Score=55.53  Aligned_cols=25  Identities=40%  Similarity=0.345  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999999753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.62  E-value=0.023  Score=44.36  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            35899999999999999999975

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.61  E-value=0.023  Score=44.36  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.57  E-value=0.028  Score=46.14  Aligned_cols=26  Identities=15%  Similarity=-0.102  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++..++++|++|+||||.+-.+|..+
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999998888765

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.55  E-value=0.026  Score=46.58  Aligned_cols=24  Identities=13%  Similarity=0.012  Sum_probs=20.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ...++++|+||||||+++..++..
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            357889999999999999887544

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.54  E-value=0.028  Score=53.38  Aligned_cols=27  Identities=26%  Similarity=0.121  Sum_probs=23.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +....++|+|+||+||||+.+.++..+
T Consensus       202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          202 AGHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             TTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998643

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=94.53  E-value=0.028  Score=49.13  Aligned_cols=25  Identities=16%  Similarity=0.275  Sum_probs=22.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ...++|+|++|+|||++++.||+..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            4689999999999999999999863

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.53  E-value=0.019  Score=53.18  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             CCcE--EEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTS--VFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~--I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..  +.|+|++||||||+.+.|+.
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence            3667  99999999999999999974

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.51  E-value=0.013  Score=55.61  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999997644

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.50  E-value=0.025  Score=44.64  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.49  E-value=0.024  Score=45.53  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+.+.|...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            368999999999999999999863

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.46  E-value=0.024  Score=44.72  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..+|+|+|.+|+||||+...+.
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999985

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.44  E-value=0.026  Score=46.79  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC
Confidence            357899999999999999999964

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.42  E-value=0.018  Score=52.93  Aligned_cols=23  Identities=17%  Similarity=0.081  Sum_probs=21.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+.|+|++||||||+.+.|+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhC
Confidence            45899999999999999999975

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.42  E-value=0.027  Score=44.84  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...+..
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            457999999999999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.42  E-value=0.024  Score=43.97  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ...+|+|+|.+|+||||+...|.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            35789999999999999999885

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.40  E-value=0.028  Score=44.18  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999974

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.40  E-value=0.027  Score=44.14  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+|+||||+...|..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            356899999999999999999863

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.39  E-value=0.027  Score=45.26  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+.+.|..
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35899999999999999999875

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.39  E-value=0.026  Score=51.41  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++|.|++|+|||++...+++.+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998776

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.36  E-value=0.025  Score=53.23  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=26.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~  126 (212)
                      +..|.|+|.+|+||||++..||..+   |.  .++|.|.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            4589999999999999999999655   43  4467663

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.33  E-value=0.028  Score=44.67  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            45899999999999999999975

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.32  E-value=0.029  Score=43.69  Aligned_cols=23  Identities=26%  Similarity=0.111  Sum_probs=20.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+|+|+|.+|+||||+...|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999999854

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.31  E-value=0.029  Score=51.77  Aligned_cols=34  Identities=26%  Similarity=0.192  Sum_probs=27.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D  125 (212)
                      ++..|.++|++|+||||++..||..+   |  ..++|.|
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D  135 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence            46789999999999999999999765   3  3455666

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.30  E-value=0.021  Score=45.37  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA  114 (212)
                      .+|+|+|.+|+||||+.+.|.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999984

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.30  E-value=0.016  Score=44.59  Aligned_cols=22  Identities=18%  Similarity=0.159  Sum_probs=10.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.29  E-value=0.025  Score=54.25  Aligned_cols=24  Identities=38%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+.|+|++||||||+.+.|+-.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcC
Confidence            567999999999999999999854

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.29  E-value=0.027  Score=44.58  Aligned_cols=22  Identities=14%  Similarity=0.064  Sum_probs=20.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..+|+|+|.+|+||||+.+.|.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHH
Confidence            3689999999999999999986

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.28  E-value=0.029  Score=44.33  Aligned_cols=23  Identities=22%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...+..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999999975

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.25  E-value=0.027  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..+|+|+|.+|+||||+...|.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            3579999999999999999985

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.24  E-value=0.028  Score=44.63  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            5899999999999999999864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.23  E-value=0.032  Score=47.66  Aligned_cols=33  Identities=21%  Similarity=-0.095  Sum_probs=26.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---CCc--EeehhH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~--~~d~D~  126 (212)
                      .+|++.|++|+||||++-.+|..+   |+.  ++|.|.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            479999999999999988888654   554  558873

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.23  E-value=0.029  Score=44.41  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...+..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999975

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=94.21  E-value=0.034  Score=51.38  Aligned_cols=23  Identities=22%  Similarity=0.067  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ...|.|+||+|+||||+++.++.
T Consensus       147 ~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          147 PGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Confidence            56899999999999999999863

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.21  E-value=0.036  Score=50.44  Aligned_cols=28  Identities=18%  Similarity=0.046  Sum_probs=24.8

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..++..++|.|+||+|||+++..+|..
T Consensus       196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          196 TLGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            6667899999999999999999998863

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.18  E-value=0.023  Score=44.11  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +..+|+++|.+|+||||+...|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999884

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.17  E-value=0.024  Score=44.13  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.17  E-value=0.032  Score=44.33  Aligned_cols=22  Identities=23%  Similarity=0.150  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            5899999999999999999964

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.10  E-value=0.035  Score=44.72  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=21.2

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhc
Confidence            3457999999999999999999975

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.10  E-value=0.026  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.119  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|.|+|++|+||||+.+.|+.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.10  E-value=0.034  Score=51.18  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh----CC--cEeehhH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDS  126 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l----g~--~~~d~D~  126 (212)
                      +..|+++|++|+||||++-.||..+    |.  -++|+|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4688999999999999999999655    43  3567773

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.08  E-value=0.034  Score=44.01  Aligned_cols=23  Identities=17%  Similarity=-0.044  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...+..
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999975

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.06  E-value=0.032  Score=44.76  Aligned_cols=23  Identities=39%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...|..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46899999999999999999963

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.05  E-value=0.045  Score=42.61  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ...+|+|+.|+||||+-.+|.-.+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999987655

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.04  E-value=0.033  Score=45.14  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ...|+|+|.+|+||||+...|..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999854

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.03  E-value=0.032  Score=51.95  Aligned_cols=23  Identities=17%  Similarity=0.138  Sum_probs=21.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ...|.|+|+.|.||||+|+.+++
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999996

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.00  E-value=0.027  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..++|+|+.||||||+.+.|+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            46789999999999999999854

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.96  E-value=0.035  Score=49.43  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      .+.-|+|.|++|+||||+|-.|.+ .|+.++.=|.+.
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~  181 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE  181 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence            577899999999999999999866 688887666543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.94  E-value=0.057  Score=50.06  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             HHHHH-hcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           83 KAADI-STELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        83 ~~~~~-~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++.++ .+--+|.++.|+|++||||||+++.||...
T Consensus       163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            34443 455579999999999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=93.93  E-value=0.036  Score=43.60  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+.+.+..
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            56899999999999999887754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=93.92  E-value=0.038  Score=47.00  Aligned_cols=24  Identities=33%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|+|+|.+||||||+...|..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999964

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.88  E-value=0.042  Score=48.72  Aligned_cols=26  Identities=15%  Similarity=0.051  Sum_probs=22.4

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ....+++|+|++|+||||+.+.++..
T Consensus        33 ~~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           33 RTNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCceEEEcCCCCCHHHHHHHHHHH
Confidence            34678999999999999999998754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.85  E-value=0.034  Score=52.14  Aligned_cols=24  Identities=29%  Similarity=0.088  Sum_probs=21.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.|+|++||||||+.+.|+-.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            678899999999999999998765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.043  Score=44.19  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=20.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+|+||||+...|..
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.72  E-value=0.037  Score=56.21  Aligned_cols=24  Identities=21%  Similarity=0.229  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.|+.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            578899999999999999999984

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.71  E-value=0.041  Score=59.59  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~  126 (212)
                      +.-++++|+|+||||||||++|..++...     .+.|++.+.
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence            35568999999999999999999997653     245888773

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.66  E-value=0.055  Score=48.39  Aligned_cols=28  Identities=21%  Similarity=0.005  Sum_probs=25.4

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..++..++|.|.||+||||++..+|..
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~   69 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLS   69 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            6777899999999999999999999865

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=93.60  E-value=0.1  Score=43.28  Aligned_cols=30  Identities=20%  Similarity=0.038  Sum_probs=25.1

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .+++..++|+|++|+|||.++..++..++.
T Consensus       105 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~  134 (237)
T 2fz4_A          105 WLVDKRGCIVLPTGSGKTHVAMAAINELST  134 (237)
T ss_dssp             HTTTSEEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             HHhCCCEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            344567999999999999999999988754

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=93.58  E-value=0.018  Score=51.47  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +.-|.|-|+-||||||+++.|++.+.
T Consensus         4 ~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46788889999999999999998875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=93.58  E-value=0.033  Score=47.09  Aligned_cols=23  Identities=35%  Similarity=0.197  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+||||||+...|..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            45799999999999999999964

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=93.56  E-value=0.023  Score=51.87  Aligned_cols=28  Identities=18%  Similarity=0.066  Sum_probs=22.3

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +++.-|.|-|+.||||||+++.|++.+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3466788899999999999999998875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.55  E-value=0.044  Score=46.35  Aligned_cols=22  Identities=36%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.+||||||+...|..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4789999999999999999964

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.52  E-value=0.072  Score=44.59  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~   58 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIG   58 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999964

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=93.40  E-value=0.035  Score=47.95  Aligned_cols=24  Identities=25%  Similarity=0.097  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +...|.|+|.||+||||+...|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHC
Confidence            445799999999999999999964

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.39  E-value=0.05  Score=51.75  Aligned_cols=27  Identities=26%  Similarity=0.085  Sum_probs=22.3

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.+..++|.|+||+||||+...+...+
T Consensus       162 l~~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          162 LTRRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             HTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            456889999999999999888776544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=93.39  E-value=0.047  Score=46.77  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|.|||||||+-..|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            5799999999999999999974

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.37  E-value=0.079  Score=44.47  Aligned_cols=23  Identities=9%  Similarity=0.157  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+++|.+|+||||+...|..
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.31  E-value=0.048  Score=48.93  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+||||||++|.+.-.
T Consensus        33 ~~killlG~~~SGKST~~kq~~i~   56 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQMRII   56 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Confidence            578999999999999999998533

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.31  E-value=0.02  Score=44.67  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=5.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|+|.+|+||||+...|...
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEC-----------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999988653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=93.29  E-value=0.055  Score=44.08  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=22.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +...+|+|++|+||||+-.+|.-.++.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            346789999999999999999876654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.29  E-value=0.062  Score=49.35  Aligned_cols=29  Identities=14%  Similarity=0.016  Sum_probs=25.4

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +..++..++|.|.||+|||+++-.+|...
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            66678999999999999999999998644

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.26  E-value=0.053  Score=44.45  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..+|+|+|.+|+|||||...+.
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	8e-05
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-04
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	8e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.002
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	0.003
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.003

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125
           ++  +G   + K+ L + LA  L   + DSD
Sbjct: 2   NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 9/123 (7%)

Query: 90  ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE---AAGGESAAKAFRESDE 146
           +L G  + L G   + K+ + + LA+          S         G             
Sbjct: 1   DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60

Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWN------IIMDRRSS 200
           +   Q   +V  + +  G  V+  G            ++               ++R   
Sbjct: 61  RMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLD 120

Query: 201 RHG 203
           R G
Sbjct: 121 RGG 123

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125
            +F+VG      T +G+ LA AL Y + D+D
Sbjct: 4   PIFMVGARGCGMTTVGRELARALGYEFVDTD 34

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 8/132 (6%)

Query: 88  STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA--KAFRESD 145
           +T        L+G++ + K+ +   +A  L   + D D L       + A+      +  
Sbjct: 1   TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR 60

Query: 146 EKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLYEISGTFKTWNI------IMDRRS 199
           +   Q           +    ++            L E +       +      I  R  
Sbjct: 61  KPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 120

Query: 200 SRHGSKNGPQRI 211
           +R G     Q +
Sbjct: 121 ARKGHFFKTQML 132

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 90  ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130
           + KG ++ + G     KT + + +A  L  +       + +
Sbjct: 2   QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK 42

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133
           ++FLVG   A K+ +G+ LA  L   ++DSD  + +  G
Sbjct: 4   NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.89
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.88
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.88
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.59
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.43
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.32
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.31
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.3
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.28
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.27
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.25
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.22
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.17
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.15
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.13
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.11
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.11
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.1
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.07
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.05
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.04
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.03
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.86
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.86
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.84
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.83
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.7
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.66
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.52
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.49
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.48
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.38
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.37
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.27
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.24
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.23
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.22
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.2
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.19
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.18
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.14
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.1
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.05
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.02
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.92
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.91
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.87
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.86
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.85
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.82
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.73
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.69
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.62
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.59
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.53
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.5
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.47
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.44
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.41
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.39
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.38
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.36
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.35
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.35
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.29
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.26
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.25
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.23
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.22
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.18
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.08
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.03
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.94
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.91
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.89
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.87
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.83
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.82
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.81
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.72
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.64
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.62
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.6
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.59
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.57
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.56
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.55
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.53
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.53
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.52
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.52
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.47
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.44
d1okkd2	207	GTPase domain of the signal recognition particle r	96.43
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.41
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.4
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.39
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.38
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.38
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.29
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.27
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.24
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.22
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.21
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.11
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.11
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.11
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.09
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.06
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.03
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	96.01
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.01
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.0
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.96
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.92
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.87
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.85
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.76
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.69
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.67
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.65
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.6
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.58
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.55
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.51
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.48
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.45
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.42
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.38
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.35
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.33
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.29
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.29
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.24
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.23
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.2
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.14
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.13
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.11
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.09
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.06
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.05
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.04
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.04
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.04
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.01
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.01
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.9
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.9
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.9
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.9
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.89
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.88
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.87
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.82
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.8
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.78
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.76
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.7
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.6
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.6
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.56
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.55
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.54
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.5
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.49
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.48
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.44
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.39
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.38
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.37
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.35
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.35
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.32
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.29
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.26
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.24
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.19
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.14
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.04
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.99
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.97
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.95
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.93
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.92
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.91
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.91
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.86
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.75
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.74
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.69
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.57
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.54
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.18
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.99
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.83
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.71
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.65
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.58
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.53
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.22
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.14
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.04
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.04
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.91
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.69
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.67
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	91.42
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.18
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.86
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.82
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	90.77
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.76
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.5
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.35
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.24
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.86
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.56
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.55
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.28
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.02
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.06
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	86.73
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.57
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	86.52
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	86.19
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.6
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	85.33
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.21
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.04
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.96
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.7
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	83.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	83.63
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	83.1
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	82.43
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	81.43
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	80.5
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	80.38
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.35

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=3.1e-23  Score=163.91  Aligned_cols=107  Identities=25%  Similarity=0.333  Sum_probs=97.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCce
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG~  174 (212)
                      +|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.+++...|+..|++.|.+++..+...++.|+++|+|.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g-~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~~   81 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA   81 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh-hhhhhhhhhhhHHHHHHHHhhhhhhccccccccccccccc
Confidence            478889999999999999999999999999999999998 8999999999999999999999998887788899999999


Q ss_pred             eechhhHHhccCCeEEEEEech-hhhhcc
Q 028227          175 VQSSANLYEISGTFKTWNIIMD-RRSSRH  202 (212)
Q Consensus       175 V~~~~~~~~L~~g~vV~Ld~~~-~~v~R~  202 (212)
                      ++...++.++.++.+|||+++. ..++|.
T Consensus        82 ~~~~~~~~~l~~~~~I~L~~~~~~~~~R~  110 (165)
T d2iyva1          82 VTSPGVRAALAGHTVVYLEISAAEGVRRT  110 (165)
T ss_dssp             GGSHHHHHHHTTSCEEEEECCHHHHHHHT
T ss_pred             cccccccccccccceeeeeccchhhhhcc
Confidence            9999999999899999999975 355554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.88  E-value=6.2e-23  Score=162.87  Aligned_cols=102  Identities=24%  Similarity=0.340  Sum_probs=93.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      +.|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.+++.+.|+..|++.+.+++.... ..+.++++|+|
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g-~~i~ei~~~~g~~~~~~~~~~~l~~~~-~~~~~~~~~~~   80 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG   80 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhh-hhhhhhhcccchHHHHHHHHHHHHhhc-cccceeccccc
Confidence            5688999999999999999999999999999999999998 899999999999999999999998876 46678889999


Q ss_pred             eeechhhHHhcc-CCeEEEEEechh
Q 028227          174 AVQSSANLYEIS-GTFKTWNIIMDR  197 (212)
Q Consensus       174 ~V~~~~~~~~L~-~g~vV~Ld~~~~  197 (212)
                      .++...++++|+ ++++|||+++.+
T Consensus        81 ~~~~~~~~~~l~~~~~~v~L~~~~e  105 (170)
T d1e6ca_          81 MVLLEQNRQFMRAHGTVVYLFAPAE  105 (170)
T ss_dssp             GGGSHHHHHHHHHHSEEEEEECCHH
T ss_pred             chhhhHHHHhhhccceeEEEecCch
Confidence            999999999887 899999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.88  E-value=9.2e-23  Score=161.61  Aligned_cols=100  Identities=19%  Similarity=0.314  Sum_probs=89.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~GgG  173 (212)
                      ++|+|+|+|||||||+|+.||+.||++|+|+|.++++..| +++.+++.+.|+..|++.|..+++.+...+.+|+++|+|
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g-~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~   79 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   79 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHh-hhhhhHHHhhhhccchhhhhhhchhhhhccccccccccc
Confidence            4699999999999999999999999999999999999998 899999999999999999999999999888899998887


Q ss_pred             eeechhhHHhc-cCCeEEEEEechhh
Q 028227          174 AVQSSANLYEI-SGTFKTWNIIMDRR  198 (212)
Q Consensus       174 ~V~~~~~~~~L-~~g~vV~Ld~~~~~  198 (212)
                      .+.    +..+ +++++|||+++.+.
T Consensus        80 ~~~----~~~l~~~~~vI~L~~s~~~  101 (161)
T d1viaa_          80 FVN----VSNLEKAGFCIYLKADFEY  101 (161)
T ss_dssp             GGG----STTGGGGCEEEEEECCHHH
T ss_pred             hhh----HHHHHhCCeEEEeccchHH
Confidence            653    3334 48999999998653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=4.1e-15  Score=111.67  Aligned_cols=103  Identities=25%  Similarity=0.404  Sum_probs=75.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~Gg  172 (212)
                      +++|+|+|||||||||+|+.||++||++|+|.|.......+ ..........++..++................++.+..
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG   80 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhc-ccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccc
Confidence            46899999999999999999999999999999999998887 55555555666666666555555544445556665555


Q ss_pred             ceeechhhHHhcc-CCeEEEEEech
Q 028227          173 GAVQSSANLYEIS-GTFKTWNIIMD  196 (212)
Q Consensus       173 G~V~~~~~~~~L~-~g~vV~Ld~~~  196 (212)
                      ...........+. .+..+|++.+.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~~~~~  105 (169)
T d1kaga_          81 GSVKSRETRNRLSARGVVVYLETTI  105 (169)
T ss_dssp             TGGGSHHHHHHHHHHSEEEECCCCH
T ss_pred             hhhhhhhhhHHhhhcceeeeccCcH
Confidence            4444444444444 68888888754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.43  E-value=4.2e-14  Score=108.93  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhC-CcEeehhHHHHHH
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLVFEA  131 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg-~~~~d~D~l~~~~  131 (212)
                      ..++.+|+|+|+|||||||+|+.||++++ +.+++.|.+..+.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~   44 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN   44 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHH
Confidence            35688999999999999999999999997 4666666665543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=7.9e-13  Score=101.54  Aligned_cols=109  Identities=11%  Similarity=-0.027  Sum_probs=63.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCch---hhhhhhhchHHHHHHHHHHHHHHhcCCCEEE
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA---AKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si---~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VV  168 (212)
                      .+..|+|+|+|||||||+|+.||+.+|+++++.|.+...... ...   ..+........+...+..+...+......++
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI-EKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI   83 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHh-hhhccCcceehhhhHHHHHHHHHHHHHHHhccCceEe
Confidence            357788999999999999999999999999999987544321 000   0111122233333444444444443333334


Q ss_pred             EeCCceeechhhHHhcc----CCeEEEEEechh-hhhcccC
Q 028227          169 CAGNGAVQSSANLYEIS----GTFKTWNIIMDR-RSSRHGS  204 (212)
Q Consensus       169 a~GgG~V~~~~~~~~L~----~g~vV~Ld~~~~-~v~R~~~  204 (212)
                      .+++.   ....+..++    ...+|||+++.+ .++|...
T Consensus        84 ~~~~~---~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~  121 (171)
T d1knqa_          84 VCSAL---KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKA  121 (171)
T ss_dssp             ECCCC---SHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHT
T ss_pred             eccch---HHHHHHHHHHhCCCceEEeecCCHHHHHHHHHh
Confidence            43332   233344443    457899999764 4444433

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.32  E-value=2.3e-12  Score=98.89  Aligned_cols=114  Identities=15%  Similarity=0.047  Sum_probs=62.4

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHhCCCchhhh---hhhhchHHHHHHHHHHHHHHhcCC
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAGGESAAKA---FRESDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~--d~D~l~~~~~G~~si~ei---~~~~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      +|.|+.|+|+|+|||||||+|+.||+++|++++  |.|.+...... ......   ..+.....+... ..+...+....
T Consensus         1 ~~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (176)
T d1zp6a1           1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQIA-ADVAGRYAKEG   78 (176)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHHH-HHHHHHHHHTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhc-CCcccccchhhhHHHHHHHHH-HHHHHHHHhcC
Confidence            367899999999999999999999999998876  45666554322 111111   111122222222 22333333445


Q ss_pred             CEEEEeCCceeechhhHHhcc-CCeEEEEEech-hhhhcccCC
Q 028227          165 RLVVCAGNGAVQSSANLYEIS-GTFKTWNIIMD-RRSSRHGSK  205 (212)
Q Consensus       165 ~~VVa~GgG~V~~~~~~~~L~-~g~vV~Ld~~~-~~v~R~~~~  205 (212)
                      ..||..+.........+.... ...+|||+++. .+.+|...+
T Consensus        79 ~~vi~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R  121 (176)
T d1zp6a1          79 YFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR  121 (176)
T ss_dssp             CEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTT
T ss_pred             CCeEecccccHHHHHHHHhcccccccccCCCCHHHHHHHHHhC
Confidence            566655432111111111111 45779999864 344444433

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.31  E-value=5.1e-12  Score=101.73  Aligned_cols=107  Identities=8%  Similarity=-0.026  Sum_probs=68.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhC-CCch----hhhhhhh---chHHHHHHHHHHHHHHhcCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESA----AKAFRES---DEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G-~~si----~ei~~~~---Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      ..+|+|+|||||||||+|+.||+++|+.++++++++.+... ....    .+.+...   ..+.......+.+.... ..
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~-~~   84 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT-QY   84 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-TS
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh-hc
Confidence            47899999999999999999999999999999999875431 1111    1111111   11233344444444433 45


Q ss_pred             CEEEEeCCceeechhhHHhcc----CCeEEEEEechhhhhccc
Q 028227          165 RLVVCAGNGAVQSSANLYEIS----GTFKTWNIIMDRRSSRHG  203 (212)
Q Consensus       165 ~~VVa~GgG~V~~~~~~~~L~----~g~vV~Ld~~~~~v~R~~  203 (212)
                      ++|+.   |.+....+...|.    -+.+|||+++.+.+.++.
T Consensus        85 ~~ild---GfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~  124 (189)
T d2ak3a1          85 NWLLD---GFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRL  124 (189)
T ss_dssp             CEEEE---SCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             Ccccc---cccchhhHHHHhhhcCcceEEEEEeccchhhhhhc
Confidence            67774   4444444444553    378999999876555543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.30  E-value=5e-12  Score=100.29  Aligned_cols=41  Identities=10%  Similarity=0.094  Sum_probs=37.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ++..|+|+|||||||||+|+.||+.+|+++++.|+++.+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~   42 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEI   42 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhh
Confidence            46789999999999999999999999999999999987653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=8.2e-12  Score=98.00  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .+|+|+|+|||||||+|+.||+++|+.++++++++.+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~   38 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAA   38 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHh
Confidence            37899999999999999999999999999999998765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.27  E-value=2.4e-12  Score=98.26  Aligned_cols=38  Identities=32%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .+|+|+|+|||||||+|+.||+++|++++|.|+.+++.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~   42 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE   42 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHh
Confidence            57999999999999999999999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.25  E-value=4.1e-12  Score=100.82  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=37.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ++..|+|+|||||||||+|+.||+.+|+.++++++++.+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~   44 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQE   44 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHH
Confidence            5688999999999999999999999999999999988654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=2.1e-11  Score=96.18  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=61.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC-----CchhhhhhhhchHHHHHHHHHHHHHHh----cCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS----SMG  164 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~-----~si~ei~~~~Ge~~fr~~E~~vL~~L~----~~~  164 (212)
                      ..|+|+|+|||||||+|+.||+++|++++++++++.+....     ..+.+++...+..........+...+.    ...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            47899999999999999999999999999999998765321     122233322221111122222223332    235


Q ss_pred             CEEEEeCCceeechhhH-Hhc-----cCCeEEEEEechhh
Q 028227          165 RLVVCAGNGAVQSSANL-YEI-----SGTFKTWNIIMDRR  198 (212)
Q Consensus       165 ~~VVa~GgG~V~~~~~~-~~L-----~~g~vV~Ld~~~~~  198 (212)
                      ++|+............+ +++     ..+.+|||+++.+.
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~  122 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL  122 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccch
Confidence            56775333222222111 122     25789999997643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.17  E-value=5.4e-11  Score=94.07  Aligned_cols=40  Identities=20%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|.+|+|+|||||||||+|+.||+++|+.++++++++.+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~   41 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAM   41 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHH
Confidence            5789999999999999999999999999999998888653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.15  E-value=7.1e-11  Score=89.22  Aligned_cols=38  Identities=18%  Similarity=0.102  Sum_probs=31.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcE-eehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~-~d~D~l~~~~  131 (212)
                      +.|+|+|+|||||||+|+.||+.++..+ ++.|.+.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~   41 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV   41 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHH
Confidence            5699999999999999999999998764 5777766543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.13  E-value=8.8e-11  Score=91.26  Aligned_cols=37  Identities=16%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +|+|+|+|||||||+|+.||+++|+++++.++++.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~   38 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAA   38 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHh
Confidence            6999999999999999999999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=4.5e-10  Score=89.04  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=35.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      ...|+|+|||||||||+|+.||+++|+.++++++++...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~   46 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAE   46 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHH
Confidence            468999999999999999999999999999999888654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.11  E-value=7.6e-11  Score=88.92  Aligned_cols=110  Identities=8%  Similarity=0.019  Sum_probs=62.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH-hCCcEeehhHHHHHHhCCCch-hhhhhhhchHHHHHHHHHHHHHHhcC---CCEEE
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESA-AKAFRESDEKGYQQAETEVLKQLSSM---GRLVV  168 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~-lg~~~~d~D~l~~~~~G~~si-~ei~~~~Ge~~fr~~E~~vL~~L~~~---~~~VV  168 (212)
                      +.|+|+|+|||||||+|+.|++. .++.+++.|++.+...+.... ...+....+...++.....++.+...   ...||
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            56889999999999999988654 579999999999877642111 11122222333344444555554432   22344


Q ss_pred             EeCCceeechhhHH----hcc----CCeEEEEEechh-hhhcccCC
Q 028227          169 CAGNGAVQSSANLY----EIS----GTFKTWNIIMDR-RSSRHGSK  205 (212)
Q Consensus       169 a~GgG~V~~~~~~~----~L~----~g~vV~Ld~~~~-~v~R~~~~  205 (212)
                      ..+.+  .....++    .++    ...+|||+++.+ .++|...+
T Consensus        83 ~d~~~--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R  126 (152)
T d1ly1a_          83 ISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR  126 (152)
T ss_dssp             ECSCC--CSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred             ccccc--CCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHcc
Confidence            33322  2222222    222    236788888754 44454443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=8.9e-11  Score=92.08  Aligned_cols=39  Identities=23%  Similarity=0.151  Sum_probs=35.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .+|+|+|+|||||||+|+.||+.+|+.+++.++++.+..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~   39 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNI   39 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHH
Confidence            379999999999999999999999999999999887653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.07  E-value=1.5e-10  Score=91.04  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=35.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .+|+|+|+|||||||+|+.||+.+|++++++++++.+.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~   38 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAA   38 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHh
Confidence            36999999999999999999999999999999988654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=3.2e-10  Score=90.13  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      +++.|+|+|||||||||+|+.||+.+|++++++++++.+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~   47 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEV   47 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHH
Confidence            36789999999999999999999999999999999988664

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3e-11  Score=94.14  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCC-CchhhhhhhhchHHHHHHHHHHHHHHhcCCCEE
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLV  167 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~-~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~V  167 (212)
                      +.++|..|+|+|+|||||||+|+.||+.+++.+++.|.+..+.... ......+...+...+.+....++..+......+
T Consensus        15 ~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (195)
T d1x6va3          15 GGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC   94 (195)
T ss_dssp             CSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3447889999999999999999999999988887777665544331 111111112222333334445555555555555


Q ss_pred             EEe
Q 028227          168 VCA  170 (212)
Q Consensus       168 Va~  170 (212)
                      +..
T Consensus        95 ~~~   97 (195)
T d1x6va3          95 ITS   97 (195)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.03  E-value=2.2e-10  Score=87.00  Aligned_cols=40  Identities=23%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEee--hhHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFE  130 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d--~D~l~~~  130 (212)
                      |..+.|+|+|+|||||||+|+.||+.++.++++  .|.+...
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~   42 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA   42 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcc
Confidence            456789999999999999999999999987754  5555443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.98  E-value=4.6e-10  Score=85.10  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=27.8

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      .+|..|+|+|+|||||||+|++||++|+..++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            46889999999999999999999999964443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.86  E-value=5.4e-09  Score=85.47  Aligned_cols=108  Identities=17%  Similarity=0.220  Sum_probs=61.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh----C--CcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCC
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l----g--~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~  164 (212)
                      -++..|+|+|+|||||||+|+.|++.+    +  ..++|.|.+.+....  +.  -+...+.......-.++...+..++
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~--~l--~ys~~~r~~~~~r~~~~a~~~~~~g   97 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK--DL--GFSEADRNENIRRIAEVAKLFADSN   97 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT--TC--CSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcC--CC--CCChhHHHHHHHHHHHHHHHHhccC
Confidence            368899999999999999999999766    3  356888987653321  11  1222222222222234445555566


Q ss_pred             CEEEEeCCceee--chhhHHhcc----------CCeEEEEEechhhhhcc
Q 028227          165 RLVVCAGNGAVQ--SSANLYEIS----------GTFKTWNIIMDRRSSRH  202 (212)
Q Consensus       165 ~~VVa~GgG~V~--~~~~~~~L~----------~g~vV~Ld~~~~~v~R~  202 (212)
                      ..||+..-....  ...+++.+.          ..+.|||+++.+...++
T Consensus        98 ~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~R  147 (208)
T d1m7ga_          98 SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQR  147 (208)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTS
T ss_pred             CceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHh
Confidence            666644322211  122233221          23679999986544443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.9e-09  Score=85.45  Aligned_cols=37  Identities=22%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      ++..|+++|+|||||||+++.+++.+++.+++.|++.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~   49 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG   49 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHH
Confidence            4689999999999999999999999999999999863

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.84  E-value=1.6e-09  Score=86.49  Aligned_cols=41  Identities=20%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      |+...|.|.|||||||||+|+.||+++|++|+++.+++...
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            45667888899999999999999999999999999998865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.8e-09  Score=85.01  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=36.6

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      |..|+|+|+|||||||+|+.||+++|+.++++++++.+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~   40 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER   40 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHH
Confidence            4579999999999999999999999999999999987653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.70  E-value=1.1e-07  Score=72.02  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC-----cEeehhHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFE  130 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~-----~~~d~D~l~~~  130 (212)
                      +.|+|.|+|||||||+++.|++.|+.     ..+..++....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~   43 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE   43 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHH
Confidence            57899999999999999999998853     34555665544

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1e-08  Score=80.95  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      .|.|.|||||||+|+|+.||+++|++|+++.+++.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~   41 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   41 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            6777899999999999999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=2.5e-08  Score=75.14  Aligned_cols=35  Identities=17%  Similarity=0.013  Sum_probs=31.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      .++|+|+|+|||||||+|+.||+.+|++++..+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~   41 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR   41 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehH
Confidence            57899999999999999999999999999977653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1e-07  Score=74.35  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=34.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC-----cEeehhHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAG  133 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~-----~~~d~D~l~~~~~G  133 (212)
                      |+.|+++|.|||||||+|+.||+.+++     ..++.|.+.....+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~   47 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVK   47 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhcc
Confidence            567999999999999999999998764     45788998877765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.49  E-value=1e-07  Score=76.41  Aligned_cols=38  Identities=24%  Similarity=0.182  Sum_probs=33.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      ..|.|+|.+||||||+++.|. .+|++++|+|.+.++.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   40 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVV   40 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHH
Confidence            357799999999999999997 58999999999988764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.48  E-value=4e-07  Score=69.14  Aligned_cols=26  Identities=12%  Similarity=0.075  Sum_probs=22.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +.|+|.|++||||||+++.||+.|+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.38  E-value=1.1e-07  Score=76.93  Aligned_cols=38  Identities=21%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcE--eehhHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVF  129 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~--~d~D~l~~  129 (212)
                      .++.|+|+|||||||||+|+.||..++..|  +++|.+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            356799999999999999999999986544  57777654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=3.6e-07  Score=76.30  Aligned_cols=38  Identities=29%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh--HHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFE  130 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D--~l~~~  130 (212)
                      ++.|+|+||||||||++++.||+.++++++..|  ++...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~   81 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   81 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            567999999999999999999999999997665  44443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=4.5e-07  Score=72.84  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~  132 (212)
                      .|.|+|++||||||+++.|+ .+|++++|+|.+.++.+
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   41 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVV   41 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHH
Confidence            67899999999999999996 68999999999998765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=5.8e-07  Score=70.26  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~  131 (212)
                      +..|.|+|++||||||+|+.|. .+|++++++|.+.++.
T Consensus         3 p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~   40 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARA   40 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHh
Confidence            4678899999999999999995 5899999999987754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3.7e-07  Score=76.77  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.|+|+||||||||++++.||+.++++++..+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~   77 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEE
Confidence            578999999999999999999999999996544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=7.6e-07  Score=71.61  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ..+++|+|||||||||+|+.||+.+++.++..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~   66 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVT   66 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCcccc
Confidence            35799999999999999999999999998753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=9.3e-07  Score=71.26  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=29.9

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ..+++|+||||+||||+|+.+|+.+++++...+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~   67 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS   67 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            568999999999999999999999999987554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.19  E-value=6.5e-07  Score=80.94  Aligned_cols=57  Identities=14%  Similarity=0.227  Sum_probs=40.7

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH--HHHHHhCCCchhhhhhhh
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVFEAAGGESAAKAFRES  144 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~--l~~~~~G~~si~ei~~~~  144 (212)
                      ..++.+.+|+|+||+|||||.+||.||+.++.||+-.|.  +-+.-+.|.++..++.+.
T Consensus        44 ~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DVesii~~L  102 (443)
T d1g41a_          44 RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL  102 (443)
T ss_dssp             TTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHH
T ss_pred             ccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecchhHHHHHH
Confidence            355668899999999999999999999999999975443  333212235665555443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.18  E-value=4.6e-07  Score=75.43  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=30.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ..+|+|+||||||||++++.||+.++++|++.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            467999999999999999999999999998765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.14  E-value=6.5e-07  Score=76.55  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ++.+|+|+||||||||.+||.||+.++.+|+..|
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~   81 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccc
Confidence            5789999999999999999999999998876554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=2.4e-06  Score=71.01  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=31.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      .++.|+|+||||||||++++.+|..++++++..+.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~   71 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLING   71 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEc
Confidence            46789999999999999999999999999987653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.7e-06  Score=69.66  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      ....++|+||||+||||++++||+.+++.++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~   83 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ   83 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            346899999999999999999999999887743

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.02  E-value=1.8e-06  Score=69.62  Aligned_cols=38  Identities=13%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEee-hhHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD-SDSLVFEA  131 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d-~D~l~~~~  131 (212)
                      +.|.|+|.+||||||+|+.|++.+|++++| +|.+.++.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            468999999999999999999999999999 57776554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.5e-05  Score=62.79  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---CCcEe
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF  122 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g~~~~  122 (212)
                      +|.-|+|.|+.||||||+++.|++.|   |+.++
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~   35 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE   35 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            47788999999999999999999976   55554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=3.5e-06  Score=70.49  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ..++.|+|+||||||||++++.+|..+|++|+..+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            34678999999999999999999999999988765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.7e-06  Score=63.57  Aligned_cols=24  Identities=33%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ++|+|+|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999999887

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=6.6e-06  Score=63.92  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      |+.|+|+||+||||||+++.|.+.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            6789999999999999999999876

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.87  E-value=2.7e-06  Score=65.06  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=23.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..|.|.|++||||||+|+.|++.++.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            345679999999999999999997764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.86  E-value=4.2e-06  Score=63.51  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +|+|+|++||||||+.+.++..++..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            69999999999999999999988653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.85  E-value=4.5e-06  Score=66.77  Aligned_cols=27  Identities=22%  Similarity=0.112  Sum_probs=24.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +..+++|+||||+||||+++.+|+.++
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            346799999999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.82  E-value=7e-06  Score=72.15  Aligned_cols=37  Identities=16%  Similarity=-0.021  Sum_probs=33.8

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+..++.+++|+||||+|||++|+.||..+|++|+..
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            4667788999999999999999999999999999865

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=8.5e-06  Score=65.02  Aligned_cols=27  Identities=26%  Similarity=0.150  Sum_probs=24.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      .+++|+||||+||||+|+.||+.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            468999999999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1e-05  Score=63.96  Aligned_cols=36  Identities=14%  Similarity=0.057  Sum_probs=30.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC----------cEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY----------YYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~----------~~~d~D~l~  128 (212)
                      |-.|.|.|++||||||+++.|++.++.          .+++.|+++
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            457889999999999999999999874          457778763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.62  E-value=2.9e-05  Score=61.48  Aligned_cols=27  Identities=19%  Similarity=0.036  Sum_probs=24.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .+.+++|+|+||+|||++++.|++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            357899999999999999999999873

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.9e-05  Score=58.87  Aligned_cols=23  Identities=30%  Similarity=0.150  Sum_probs=21.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .|.|+|++||||||+++.|++.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00015  Score=62.35  Aligned_cols=36  Identities=14%  Similarity=0.153  Sum_probs=30.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg-------~~~~d~D~l~  128 (212)
                      +..|.|.|++||||||+|+.|++.|.       +..+.+|+++
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            45788999999999999999999874       3457889885

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.53  E-value=0.00025  Score=57.08  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHhCC---Cchhhhh---h------------hhchHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGG---ESAAKAF---R------------ESDEKGYQ  150 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l~~~~~G~---~si~ei~---~------------~~Ge~~fr  150 (212)
                      ..++|+|++|||||.++++++..+     .+.|+++.++..+....   ....++.   .            -.|.+...
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~~~~~  116 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQ  116 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCchHHH
Confidence            459999999999999999999775     45577777765543210   0111111   0            01223333


Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCceee-----chhhHHhccCCeEEEEEech
Q 028227          151 QAETEVLKQLSSMGRLVVCAGNGAVQ-----SSANLYEISGTFKTWNIIMD  196 (212)
Q Consensus       151 ~~E~~vL~~L~~~~~~VVa~GgG~V~-----~~~~~~~L~~g~vV~Ld~~~  196 (212)
                      +.-..++..+.+.+..+|.++...+.     .+.-+..|+.+.++-|+.+.
T Consensus       117 ~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d  167 (213)
T d1l8qa2         117 IEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDN  167 (213)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCH
T ss_pred             HHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCc
Confidence            33345566666555555544443221     23344456688888887543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=3.4e-05  Score=65.97  Aligned_cols=32  Identities=25%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      .+++|+||+|+|||.+|+.||+.++.+|+..|
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d   84 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD   84 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEec
Confidence            37899999999999999999999999987555

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.47  E-value=3.8e-05  Score=67.32  Aligned_cols=36  Identities=31%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehh
Q 028227           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (212)
Q Consensus        90 ~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D  125 (212)
                      ...+.+|+++||.|||||.+||.||+.++.+|+-.|
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D  100 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  100 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhcccceeehh
Confidence            456789999999999999999999999988876433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.44  E-value=8.3e-05  Score=58.67  Aligned_cols=33  Identities=15%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      .+..|+|+|++|+|||++.+.+++.++..+...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i   60 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYL   60 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEE
Confidence            367899999999999999999999998766533

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=7.9e-05  Score=58.94  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=22.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .+++|+||+|+||||+++.+|+.++
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhh
Confidence            3589999999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.0001  Score=58.68  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHhc-ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADIST-ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~-~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..++++...+.. .-...+++|+||||+||||+++.+|+.+
T Consensus        17 ~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          17 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            345555555421 1123468999999999999999999987

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=5.4e-05  Score=59.56  Aligned_cols=24  Identities=33%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .|+|+||+|||||||++.|++.++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999999876

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00036  Score=56.46  Aligned_cols=39  Identities=15%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .++.+-. ++-..-++.+++|+|+||+|||++++.||+++
T Consensus        29 ~Ei~~l~-~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          29 EEIRRTI-QVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHH-HHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            3454433 33333357899999999999999999999865

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.35  E-value=7e-05  Score=64.12  Aligned_cols=36  Identities=8%  Similarity=0.117  Sum_probs=27.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~l~  128 (212)
                      ...|.|+|.+||||||+++.|++.+   ++  .+++.|+++
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            3479999999999999999998765   33  489999985

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=8.2e-05  Score=58.71  Aligned_cols=24  Identities=21%  Similarity=0.121  Sum_probs=22.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+++|+||+|+||||+++.+|+.+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            458999999999999999999985

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.29  E-value=0.00013  Score=57.30  Aligned_cols=42  Identities=21%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhccc------CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           79 AVKKKAADISTEL------KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        79 ~lk~~~~~~~~~l------~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      +.++.++.++..+      ++..|+|.|.-|+||||++|.+++.+|+.
T Consensus        13 ~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          13 SMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            3444555555544      35679999999999999999999999974

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=8.2e-05  Score=58.06  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=22.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +.|+|+||+||||+||++.|++.+.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            3589999999999999999998764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.25  E-value=5.4e-05  Score=65.70  Aligned_cols=40  Identities=25%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC--CcE--eehhHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR--YYY--FDSDSLVFEAAG  133 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg--~~~--~d~D~l~~~~~G  133 (212)
                      ..++|+||||||||.+|+.||..++  .+|  ++..+++..+.|
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G  167 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNT  167 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBC
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccc
Confidence            3455589999999999999999986  455  455555544444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.23  E-value=5.5e-05  Score=60.18  Aligned_cols=24  Identities=25%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      .++|+||||+|||++++.+++.+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            356679999999999999999863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.22  E-value=5.7e-05  Score=58.38  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=26.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ++..|+|-|+.||||||+++.|++.++-..+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            4568999999999999999999999975444

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00046  Score=58.15  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh----------CCcEeehh--HHHHHHhCCCchhhhhhhhc
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD--SLVFEAAGGESAAKAFRESD  145 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l----------g~~~~d~D--~l~~~~~G~~si~ei~~~~G  145 (212)
                      .++.+-++-+... .+.+++|+|+||+|||++.+.||+++          +..++.+|  .++.   | ..        .
T Consensus        25 ~Ei~~l~~iL~r~-~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~lia---g-~~--------~   91 (268)
T d1r6bx2          25 KELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA---G-TK--------Y   91 (268)
T ss_dssp             HHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C---C-CC--------C
T ss_pred             HHHHHHHHHHhcC-ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhc---c-Cc--------c
Confidence            4555444444333 46899999999999999999999863          33444443  3332   2 11        1


Q ss_pred             hHHHHHHHHHHHHHHhcCCCEEEE
Q 028227          146 EKGYQQAETEVLKQLSSMGRLVVC  169 (212)
Q Consensus       146 e~~fr~~E~~vL~~L~~~~~~VVa  169 (212)
                      ...|.+.-..++..+...++.|+.
T Consensus        92 ~g~~e~r~~~i~~~~~~~~~iIlf  115 (268)
T d1r6bx2          92 RGDFEKRFKALLKQLEQDTNSILF  115 (268)
T ss_dssp             SSCHHHHHHHHHHHHSSSSCEEEE
T ss_pred             chhHHHHHHHHHHHhhccCCceEE
Confidence            223334344567777666666664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00018  Score=56.55  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|+-|+|-|+.||||||+++.|++.|
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46779999999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=8.9e-05  Score=58.50  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=27.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeeh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~  124 (212)
                      +.+.|+|-|+.||||||+++.|++.|.-..+..
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~~   33 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   33 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCCee
Confidence            357899999999999999999999886544433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.94  E-value=0.00027  Score=53.40  Aligned_cols=23  Identities=26%  Similarity=0.120  Sum_probs=20.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .|.|+|.+||||||+...|+..|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            45699999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00043  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +..++|+|++|+||||+|+.+++.++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            456899999999999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00033  Score=56.14  Aligned_cols=26  Identities=23%  Similarity=0.156  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|+.|+|+||+|+|||||.+.|.+..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            47889999999999999999998875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00045  Score=55.21  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      +|+-|+|-|+.||||||+++.|++.|.-
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            5788999999999999999999999854

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00042  Score=54.90  Aligned_cols=30  Identities=13%  Similarity=0.082  Sum_probs=26.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ++-|+|-|+.||||||+++.|++.++-..+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            578999999999999999999999876554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00044  Score=53.98  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.|+|+||+|+||+||.+.|.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999998765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0004  Score=51.72  Aligned_cols=28  Identities=21%  Similarity=0.084  Sum_probs=25.1

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +..+|..+.|+|+||+|||+++-.+|..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            5667899999999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.81  E-value=0.00034  Score=54.10  Aligned_cols=27  Identities=22%  Similarity=0.167  Sum_probs=23.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh---CCcE
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL---RYYY  121 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~  121 (212)
                      .|.|-|+.||||||+++.|++.|   |+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v   31 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
Confidence            58899999999999999999876   5544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00043  Score=58.92  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=28.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh--------CCcEeehhHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL--------RYYYFDSDSLV  128 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l--------g~~~~d~D~l~  128 (212)
                      +-.|-|.|++||||||++..|.+.|        .+.++..|+++
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            4567789999999999999887654        34668999983

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.64  E-value=0.00042  Score=57.66  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999999997543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.62  E-value=0.00046  Score=58.06  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=22.8

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +-+|+|+|+||+|||+++|.+|..|
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhC
Confidence            3579999999999999999999876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.60  E-value=0.00048  Score=56.84  Aligned_cols=25  Identities=16%  Similarity=0.208  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.++--
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999999999743

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00049  Score=56.94  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..|.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999999997644

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0007  Score=57.67  Aligned_cols=30  Identities=30%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh---CCcEeeh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDS  124 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l---g~~~~d~  124 (212)
                      +++|+||+|+|||.+|+.||+.+   +.+++..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~   87 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI   87 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEE
Confidence            67888999999999999999987   4555443

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0016  Score=51.56  Aligned_cols=26  Identities=12%  Similarity=0.019  Sum_probs=23.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +..++|.|++|+||||+++.+|+.+-
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            55699999999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00054  Score=56.90  Aligned_cols=26  Identities=27%  Similarity=0.361  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            47899999999999999999997543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.53  E-value=0.00081  Score=48.91  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|+|+|++||||||+...|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0007  Score=55.94  Aligned_cols=24  Identities=29%  Similarity=0.402  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.++-
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            478999999999999999999974

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.52  E-value=0.0009  Score=52.71  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=29.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD  125 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D  125 (212)
                      +..++..++|.|+||||||+++..+|...     ...|++.+
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            46678999999999999999999998764     24566544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00057  Score=52.94  Aligned_cols=27  Identities=26%  Similarity=0.107  Sum_probs=24.2

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+++.+.|+|+||||||+++-.+|.
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            477899999999999999999998864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.51  E-value=0.00072  Score=56.13  Aligned_cols=25  Identities=24%  Similarity=0.297  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999999999753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.48  E-value=0.00083  Score=52.52  Aligned_cols=23  Identities=30%  Similarity=0.249  Sum_probs=20.6

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHh
Q 028227           95 SVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .|+|+|++||||||+.+.|.+.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.47  E-value=0.00062  Score=56.26  Aligned_cols=26  Identities=12%  Similarity=0.122  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+.-+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999997543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.00063  Score=54.44  Aligned_cols=25  Identities=36%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            4788999999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.43  E-value=0.001  Score=53.89  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l---g--~~~~d~D~l  127 (212)
                      ++..|+|+||+|+||||..-.||..+   |  ..++.+|.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            46889999999999999888888654   2  344566654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.41  E-value=0.00095  Score=52.35  Aligned_cols=29  Identities=21%  Similarity=0.028  Sum_probs=25.5

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +...+..++|.|+||||||++|-.+|...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            47788999999999999999999998653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.0011  Score=54.07  Aligned_cols=36  Identities=22%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l  127 (212)
                      ++..|+|+||+|+||||..-.||.++     .+.++.+|.+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            46789999999999999888888654     2344666655

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00076  Score=55.98  Aligned_cols=25  Identities=20%  Similarity=0.138  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999999743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.38  E-value=0.00096  Score=55.34  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999999999743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.00093  Score=56.30  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999999997543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.35  E-value=0.0012  Score=52.50  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=31.1

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      +.+.-|+|+|++|+||||++-.|.++ |+.++.=|.+.
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~   48 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR-GHRLIADDRVD   48 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEE
Confidence            35788999999999999999999875 99888766653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.32  E-value=0.0012  Score=53.25  Aligned_cols=35  Identities=29%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l  127 (212)
                      +..|+|+|++|+||||..-.||..+     ...++.+|.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            3457789999999999988888654     2445677765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.31  E-value=0.0011  Score=53.99  Aligned_cols=36  Identities=19%  Similarity=0.123  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l  127 (212)
                      ++..|+|+||+|+||||..-.||..+     ...++.+|.+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            46788999999999999888888654     3445666654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0013  Score=51.29  Aligned_cols=27  Identities=19%  Similarity=-0.084  Sum_probs=24.5

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..++..++|.|+||||||++|..+|.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            666789999999999999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.27  E-value=0.001  Score=55.56  Aligned_cols=24  Identities=13%  Similarity=0.229  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.|+-
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            478999999999999999999974

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.24  E-value=0.00079  Score=55.54  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999999998543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.22  E-value=0.0012  Score=48.87  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..+|+|+|.+||||||+-..|.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999885

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0016  Score=52.97  Aligned_cols=35  Identities=23%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSL  127 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l-----g~~~~d~D~l  127 (212)
                      +..|+|+||+|+||||..-.||..+     ..-++.+|.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   48 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF   48 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            5678899999999999888888654     2445667765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.11  E-value=0.0019  Score=46.99  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .-+|+|+|.+|||||||.+.+...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            347999999999999999998653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.11  E-value=0.0019  Score=56.81  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        78 ~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.+.+.-+.. -.+.+++|+|+||+|||++...||+++
T Consensus        29 ~ei~~~~~~L~r-~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          29 EEIRRVIQILLR-RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             HHHHHHHHHHHC-SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            455544444433 356889999999999999999999763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.11  E-value=0.0014  Score=52.03  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l  127 (212)
                      .+.-|+|.|++|+||||++-.|.++ |+.++.=|.+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v   48 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDAI   48 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeE
Confidence            5788999999999999999999764 8888866654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.09  E-value=0.00078  Score=56.19  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhc
Confidence            4789999999999999999999743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.06  E-value=0.00084  Score=55.84  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999999853

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.03  E-value=0.0018  Score=53.76  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ..+.|+||+||||||+.+.|+-.+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            467799999999999999998543

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.01  E-value=0.024  Score=42.49  Aligned_cols=98  Identities=13%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHHHHHhCCCchhhhhhhhchHHHHHHHHHHHHHHhcCCCEEEEeC---
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG---  171 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~~~~~G~~si~ei~~~~Ge~~fr~~E~~vL~~L~~~~~~VVa~G---  171 (212)
                      .|+|-||.+|=|||++..|++.+.+|.+-...+--...|            .+    .-.+....++...+.+|.-=   
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfelaksg------------ne----klfehfnkladednviidrfvys   65 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG------------NE----KLFEHFNKLADEDNVIIDRFVYS   65 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHHC------------HH----HHHHHHHHHTTCCSEEEESCHHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhcc------------CH----HHHHHHHhhccccceeeehhhhh
Confidence            588999999999999999999999999876553222222            11    11234556666666666310   


Q ss_pred             ---------CceeechhhHHhc----c-CCeEEEEEechhhhhcccCCCCC
Q 028227          172 ---------NGAVQSSANLYEI----S-GTFKTWNIIMDRRSSRHGSKNGP  208 (212)
Q Consensus       172 ---------gG~V~~~~~~~~L----~-~g~vV~Ld~~~~~v~R~~~~~~~  208 (212)
                               .-.++.+.....+    + ...+|||..+...++.+++.++.
T Consensus        66 nlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgd  116 (164)
T d2axpa1          66 NLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD  116 (164)
T ss_dssp             HHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTC
T ss_pred             hhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccc
Confidence                     0001122222222    1 45799999988887777765543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.01  E-value=0.002  Score=47.86  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|++||||||+.+.|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999999853

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.00  E-value=0.0024  Score=50.27  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~l~  128 (212)
                      ..+.-|+|.|++|+||||++-.|.++ |+.++.=|.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            35788999999999999999888876 98888666653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0022  Score=46.14  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+...|..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999975

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.96  E-value=0.0018  Score=53.34  Aligned_cols=24  Identities=38%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+||+||||||+.+.|+-
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999999964

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.92  E-value=0.0025  Score=48.94  Aligned_cols=29  Identities=14%  Similarity=-0.036  Sum_probs=25.3

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +...+..++|.|+||+|||+++-.+|...
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            36678999999999999999999998644

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.92  E-value=0.0024  Score=47.54  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+||||||+...|..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.87  E-value=0.0025  Score=52.54  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=21.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ...|.|+||.|.||||+|+.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999999876

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.85  E-value=0.0021  Score=53.24  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            4789999999999999999999643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0028  Score=47.29  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      |+.-+|+|+|.+|+||||+...+..
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            3456899999999999999999975

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0021  Score=52.44  Aligned_cols=24  Identities=38%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|..+.|+|++||||||+.+.|+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999999974

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0033  Score=48.53  Aligned_cols=22  Identities=32%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ++|+|+|++|+||||+-..|..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.0032  Score=51.68  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHH
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ...++++..+|+|.+|+||||+-..|.
T Consensus        90 ~~~l~~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          90 KEYLKGKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred             HHHhcCCeEEEECCCCCCHHHHHHhhc
Confidence            345567899999999999999999884

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.65  E-value=0.004  Score=50.62  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=30.0

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcEe
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~  122 (212)
                      ++..|..+|+|+|||++|||+++..|.+.++-..+
T Consensus        48 ~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi   82 (205)
T d1tuea_          48 KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   82 (205)
T ss_dssp             HTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             cCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence            45677899999999999999999999999875444

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.0038  Score=46.54  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=19.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.004  Score=47.38  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=21.3

Q ss_pred             cEEEEEccC-CCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMN-NAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~-GsGKTTvak~LA~~l  117 (212)
                      +++||+|-. |+||||++-.||.+|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            689999985 999999999998766

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.58  E-value=0.0037  Score=47.78  Aligned_cols=26  Identities=19%  Similarity=0.115  Sum_probs=22.5

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +..+|..+.|.|+||+|||+++..+|
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45678999999999999999997664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0036  Score=45.96  Aligned_cols=23  Identities=39%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      |-+|+|+|.+++||||+-.+|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999998863

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.004  Score=46.90  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+||||||+...+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3689999999999999998864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.0034  Score=51.57  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47889999999999999999997543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0042  Score=49.66  Aligned_cols=29  Identities=31%  Similarity=0.213  Sum_probs=25.3

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.+++...+|+|++|+|||+++-.||..+
T Consensus        25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          25 NMVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            66778889999999999999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.45  E-value=0.0042  Score=46.38  Aligned_cols=23  Identities=43%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +..+|+|+|++|+||||+...|.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            35689999999999999999884

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.42  E-value=0.01  Score=48.36  Aligned_cols=37  Identities=16%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        79 ~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.++++.++..  +..|+|.|.+|+||+++|+.|.+..
T Consensus        11 ~~~~~~~~~a~~--~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          11 EILEKIKKISCA--ECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             HHHHHHHHHTTC--CSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCC--CCCEEEECCCCcCHHHHHHHHHHhc
Confidence            455555554443  5789999999999999999998654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.38  E-value=0.005  Score=46.16  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+++|.+|+||||+...|..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            699999999999999999975

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0047  Score=46.83  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+.+.|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3689999999999999998863

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0036  Score=46.78  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=21.5

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      |+.-+|+|+|.+|+||||+.+.|..
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            3446799999999999999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0054  Score=45.78  Aligned_cols=21  Identities=29%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|||||++...+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0054  Score=45.95  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+.+.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.0052  Score=45.95  Aligned_cols=20  Identities=35%  Similarity=0.356  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA  114 (212)
                      .|.|+|.+|+||||+.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999996

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0054  Score=45.76  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +.-+|+|+|.+|+|||++.+.+..
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            345799999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0059  Score=45.13  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+.+.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999975

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.23  E-value=0.0053  Score=45.88  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .|.|+|.||+||||+...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999963

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.20  E-value=0.0061  Score=45.30  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+|+|+|++|+||||+...|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4789999999999999999965

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0062  Score=45.38  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0064  Score=45.18  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=19.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+++|.+|+||||+.+.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0065  Score=46.22  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..|+|+|.|++||||+-..|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0067  Score=44.87  Aligned_cols=21  Identities=19%  Similarity=0.129  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|||||++.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0067  Score=45.39  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+||||||+.+.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0071  Score=45.20  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+++|.+|+||||+...+..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999974

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.05  E-value=0.005  Score=46.22  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..+|+|+|.+|+||||+-+.+.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4589999999999999999886

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0054  Score=45.69  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+...|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0072  Score=45.07  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            689999999999999998864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0071  Score=45.28  Aligned_cols=22  Identities=14%  Similarity=0.160  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+...+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999999864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0074  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999998854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.01  E-value=0.0062  Score=46.46  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=19.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..|.|+|.||+||||+-+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            369999999999999999995

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.009  Score=47.18  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=24.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.+++|.|++|+|||++|+.+|+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.006  Score=46.29  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +.-+|+|+|.+|+|||++.+.+..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHh
Confidence            345899999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0056  Score=45.55  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..+|+|+|.+|+||||+...+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.90  E-value=0.0082  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+||||||+...+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0081  Score=45.19  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||+|.+.+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.008  Score=45.21  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+|+|+|.+|+|||++...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0084  Score=44.89  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++.+.+..
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999975

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0079  Score=44.77  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=19.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0086  Score=51.16  Aligned_cols=25  Identities=16%  Similarity=0.034  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ...|-|+|+||+||||+-..|+..+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            5679999999999999999998654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0047  Score=45.69  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=20.2

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +...|.|+|.|++|||||-+.|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            35689999999999999999884

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.86  E-value=0.011  Score=47.41  Aligned_cols=27  Identities=11%  Similarity=0.010  Sum_probs=24.4

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +..+|..++|.|+||+|||+++..+|.
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            777789999999999999999988874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.82  E-value=0.0062  Score=45.97  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +.-+|+|+|.+|+||||+.+.|.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0091  Score=44.74  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+||||||+...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999998865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0087  Score=44.79  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA  114 (212)
                      +|+|+|.+|+|||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHh
Confidence            68999999999999999885

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0096  Score=44.44  Aligned_cols=22  Identities=36%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++.+.+..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999998865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.76  E-value=0.012  Score=47.80  Aligned_cols=23  Identities=9%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ..-+|+|+|.+|+||||++..|.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHh
Confidence            35689999999999999999985

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.70  E-value=0.0057  Score=52.15  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=23.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      +.+|+++|+.||||||+.+.|.....
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            57899999999999999999987653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.60  E-value=0.0033  Score=51.80  Aligned_cols=28  Identities=14%  Similarity=0.229  Sum_probs=24.4

Q ss_pred             HhcccCCcEEEEEccCCCCHHHHHHHHH
Q 028227           87 ISTELKGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        87 ~~~~l~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +...|+++..+|+|++|+||||+-..|.
T Consensus        91 L~~~l~~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          91 IIPHFQDKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             TGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred             HHHhhccceEEEECCCCccHHHHHHhhc
Confidence            4566788888999999999999999884

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.013  Score=46.79  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehh
Q 028227           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD  125 (212)
Q Consensus        80 lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D  125 (212)
                      ++....+  +  ..+.|++.|--|+||||++-.||..+   |.  -.+|+|
T Consensus        11 ~~~~~~~--~--~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          11 LVDDIAR--N--EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             HHHHHHT--T--SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             HHHHhhc--C--CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            5545554  2  24677888999999999877776554   44  356888

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.011  Score=43.89  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=19.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++...+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3789999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.011  Score=44.55  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+|+|||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998863

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.54  E-value=0.018  Score=47.76  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~  120 (212)
                      ..-+...++|+|++++|||+++..|++.+|-.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            33457889999999999999999999999753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.50  E-value=0.0073  Score=51.95  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..|+|=|+.|+||||+++.|++.++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            5799999999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.49  E-value=0.012  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999864

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.014  Score=43.73  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +|-.|+|+|.+|+||+|+|++|...+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999997666

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.012  Score=44.15  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+||||+.+.|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.39  E-value=0.013  Score=44.99  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+||||||+...+..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            3689999999999999998874

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.012  Score=44.12  Aligned_cols=21  Identities=33%  Similarity=0.205  Sum_probs=19.2

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .|.|+|.+|+||||+.+.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            599999999999999999964

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.012  Score=44.39  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             cEEEEEccCCCCHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFL  113 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~L  113 (212)
                      -+|+|+|.+|+||||+.+.+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999998

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.35  E-value=0.014  Score=49.64  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=22.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      ...|-|+|+||+||||+-..|.+++
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.32  E-value=0.007  Score=52.02  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=24.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ...|+|-|+.|+||||+++.|++.++.
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.014  Score=44.44  Aligned_cols=22  Identities=27%  Similarity=0.120  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++.+.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            4699999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.26  E-value=0.0096  Score=45.27  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.9

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|.-+|.|+|.+++||||+...|..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHH
Confidence            4556899999999999999999964

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.014  Score=44.26  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++.+.+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.017  Score=46.16  Aligned_cols=33  Identities=21%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHh---CCcE--eehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~l---g~~~--~d~D  125 (212)
                      ++.|++.|.-|+||||++-.||.++   |.+.  +|+|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            6789999999999999988888766   5544  6877

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.016  Score=43.40  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+||||||+...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.04  E-value=0.0088  Score=44.87  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=9.4

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +|+|+|.+||||||+...|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999988763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.99  E-value=0.0048  Score=45.23  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=20.0

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +|.|+|.|++||||+..+|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.018  Score=43.07  Aligned_cols=23  Identities=26%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .-+|.|+|.+|+||||+..+|..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            36899999999999999998864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.95  E-value=0.016  Score=46.32  Aligned_cols=17  Identities=12%  Similarity=0.046  Sum_probs=14.4

Q ss_pred             cEEEEEccCCCCHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLG  110 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTva  110 (212)
                      ..++|.|+|||||||+.
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            46788999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.014  Score=44.57  Aligned_cols=22  Identities=23%  Similarity=0.060  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++...+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999988864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.92  E-value=0.02  Score=45.82  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=26.1

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---CC--cEeehhH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS  126 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g~--~~~d~D~  126 (212)
                      +.|.|.|--|+||||++-.||..|   |+  -.+|+|-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            468889999999999998888665   44  3578883

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.015  Score=43.12  Aligned_cols=21  Identities=29%  Similarity=0.192  Sum_probs=18.9

Q ss_pred             EEEEEccCCCCHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .|.|+|.+++||||+-.+|-.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999953

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.018  Score=49.51  Aligned_cols=25  Identities=20%  Similarity=0.026  Sum_probs=19.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFL  113 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~L  113 (212)
                      ..+.....+|.|+||+||||+...+
T Consensus       159 ~al~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         159 VALTRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             HHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred             HHHcCCeEEEEcCCCCCceehHHHH
Confidence            3445678899999999999887554

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.012  Score=44.34  Aligned_cols=20  Identities=30%  Similarity=0.285  Sum_probs=18.4

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA  114 (212)
                      .|.|+|.|++||||+-.+|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999884

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.012  Score=44.19  Aligned_cols=22  Identities=27%  Similarity=0.134  Sum_probs=18.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|.+|+|||++...+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.74  E-value=0.0099  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..|+|-|+.|+||||+++.|++.++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998774

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.69  E-value=0.02  Score=46.37  Aligned_cols=19  Identities=11%  Similarity=0.076  Sum_probs=15.4

Q ss_pred             CcEEEEEccCCCCHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGK  111 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak  111 (212)
                      ...++|.|+|||||||+.-
T Consensus        24 ~g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHH
Confidence            3468899999999998653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.0044  Score=45.36  Aligned_cols=24  Identities=29%  Similarity=0.113  Sum_probs=20.3

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..+|+|+.||||||+-.+|.-.++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            345889999999999999987764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.54  E-value=0.014  Score=43.87  Aligned_cols=20  Identities=40%  Similarity=0.303  Sum_probs=18.3

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA  114 (212)
                      .|.|+|.+++||||+...|.
T Consensus         3 ~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48899999999999999984

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.18  E-value=0.026  Score=40.51  Aligned_cols=29  Identities=14%  Similarity=-0.133  Sum_probs=22.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcE
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~  121 (212)
                      .+..+|.++.|+|||+++-.+....|...
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~v   36 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKV   36 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCCE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCcE
Confidence            46788999999999999877666666443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.99  E-value=0.029  Score=41.78  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      -+|+|+|..|+|||++-+.+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.91  E-value=0.028  Score=44.20  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|..|+||||+.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999854

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.83  E-value=0.031  Score=41.40  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      -+|+|+|..|+|||++-+.+-.
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4799999999999999998854

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.058  Score=45.47  Aligned_cols=35  Identities=23%  Similarity=0.093  Sum_probs=30.0

Q ss_pred             HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        83 ~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      .+.-+.+--+|+++.|+|++|+|||++...+++..
T Consensus        33 ~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          33 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            45556777899999999999999999999998754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.039  Score=41.86  Aligned_cols=23  Identities=13%  Similarity=0.007  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      --+|+++|.+|+||||+...+..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.03  Score=44.96  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ..-+|+|+.|||||++-.+|+-.+|
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3457999999999999999976554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.53  E-value=0.025  Score=39.59  Aligned_cols=20  Identities=30%  Similarity=-0.004  Sum_probs=17.1

Q ss_pred             CCcEEEEEccCCCCHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGK  111 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak  111 (212)
                      ++++++|.+++|+|||.++-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHH
T ss_pred             cCCcEEEEcCCCCChhHHHH
Confidence            47899999999999997663

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.22  E-value=0.058  Score=41.30  Aligned_cols=33  Identities=30%  Similarity=0.276  Sum_probs=24.6

Q ss_pred             CcEEEEE-ccCCCCHHHHHHHHHHHh---CCc--Eeehh
Q 028227           93 GTSVFLV-GMNNAIKTHLGKFLADAL---RYY--YFDSD  125 (212)
Q Consensus        93 ~~~I~Lv-G~~GsGKTTvak~LA~~l---g~~--~~d~D  125 (212)
                      ++.|.++ +-.|+||||++..||..+   |.+  ++|+|
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            3567677 688999999999998654   444  56776

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.14  E-value=0.058  Score=41.38  Aligned_cols=31  Identities=26%  Similarity=0.247  Sum_probs=22.9

Q ss_pred             EEEEE-ccCCCCHHHHHHHHHHHh---CC--cEeehh
Q 028227           95 SVFLV-GMNNAIKTHLGKFLADAL---RY--YYFDSD  125 (212)
Q Consensus        95 ~I~Lv-G~~GsGKTTvak~LA~~l---g~--~~~d~D  125 (212)
                      .|.++ |-.|+||||++..||..+   |.  -++|+|
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D   39 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            45555 789999999999888654   43  356776

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.053  Score=44.66  Aligned_cols=51  Identities=18%  Similarity=0.115  Sum_probs=34.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHH---hC--CcEeehhH----HHHHHhCCCchhhh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADA---LR--YYYFDSDS----LVFEAAGGESAAKA  140 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~---lg--~~~~d~D~----l~~~~~G~~si~ei  140 (212)
                      +...+..+.|.|+||||||+++-.++..   .|  +.|+|+..    .+.+..| .+..++
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~G-vd~d~v  109 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG-VDIDNL  109 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT-CCGGGC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhC-CCHHHE
Confidence            5567899999999999999999888643   23  45666643    2334445 454443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.04  E-value=0.053  Score=43.77  Aligned_cols=32  Identities=19%  Similarity=0.100  Sum_probs=23.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh---CCcE--eehh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSD  125 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l---g~~~--~d~D  125 (212)
                      +.|++.|--|+||||++--||..|   |..+  +|+|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            467789999999999777666443   6544  6887

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.91  E-value=0.047  Score=42.91  Aligned_cols=43  Identities=26%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHh---C---CcEeehhHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R---YYYFDSDSLVFEA  131 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~l---g---~~~~d~D~l~~~~  131 (212)
                      ..++|+++++++|.|+|||.++-..+..+   |   +..+-+..+..+.
T Consensus        54 ~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~  102 (237)
T d1gkub1          54 RILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQA  102 (237)
T ss_dssp             HHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHH
T ss_pred             HHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHH
Confidence            45678999999999999998877665432   2   2233455565544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.69  E-value=0.057  Score=40.74  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      +.++++++|.|+|||.++-.++.
T Consensus        23 ~~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          23 ETNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             GSCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCcHHHHHHHHHH
Confidence            45788999999999998777764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.67  E-value=0.043  Score=43.34  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             EEEEccCCCCHHHHHHHHHHH
Q 028227           96 VFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~  116 (212)
                      |.|+|.+++||||+...|...
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhh
Confidence            999999999999999988654

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.42  E-value=0.15  Score=39.48  Aligned_cols=33  Identities=18%  Similarity=-0.018  Sum_probs=26.6

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcE
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~  121 (212)
                      ..++..+.+|..++|+|||.++-.++..++.+.
T Consensus        81 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~  113 (206)
T d2fz4a1          81 RWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT  113 (206)
T ss_dssp             HHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCE
T ss_pred             HHHhCCCcEEEeCCCCCceehHHhHHHHhcCce
Confidence            344566778999999999999999998887544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.051  Score=43.15  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             EEEEEccCCCCHHHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      ..+|+|.-||||||+-+.+.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4678999999999999998764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.98  E-value=0.071  Score=46.07  Aligned_cols=114  Identities=8%  Similarity=0.021  Sum_probs=58.7

Q ss_pred             cCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC---cEeehhHHHHHHhCCCchhhhhhhhchHHH
Q 028227           73 AEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY---YYFDSDSLVFEAAGGESAAKAFRESDEKGY  149 (212)
Q Consensus        73 ~~d~~~~lk~~~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~lg~---~~~d~D~l~~~~~G~~si~ei~~~~Ge~~f  149 (212)
                      .+.......+..+++... +.-.|+|+||.||||||....+-+.++-   .++...+=+|-...+....++....+ ..|
T Consensus       139 ~LG~~~~~~~~l~~l~~~-~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~-~~~  216 (401)
T d1p9ra_         139 SLGMTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD-MTF  216 (401)
T ss_dssp             GSCCCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT-BCH
T ss_pred             hhcccHHHHHHHHHHHhh-hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcC-CCH
Confidence            333333333344444333 2456889999999999999999887743   23333322222111111111122222 223


Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCceeechhhH-Hhcc---CCeEEEEEe
Q 028227          150 QQAETEVLKQLSSMGRLVVCAGNGAVQSSANL-YEIS---GTFKTWNII  194 (212)
Q Consensus       150 r~~E~~vL~~L~~~~~~VVa~GgG~V~~~~~~-~~L~---~g~vV~Ld~  194 (212)
                          ..+++.+..++.-||..|.  +-+.... ..++   .|+.||-.+
T Consensus       217 ----~~~l~~~lR~dPDvi~igE--iRd~~ta~~a~~aa~tGhlV~tTl  259 (401)
T d1p9ra_         217 ----ARGLRAILRQDPDVVMVGE--IRDLETAQIAVQASLTGHLVMSTL  259 (401)
T ss_dssp             ----HHHHHHHGGGCCSEEEESC--CCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----HHHHHHHHhhcCCEEEecC--cCChHHHHHHHHHHhcCCeEEEEe
Confidence                3356666666555665554  3333222 2333   688888776

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.86  E-value=0.072  Score=43.99  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=20.8

Q ss_pred             EEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           95 SVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      .-+|+|+.|||||++-.+|+=.||.
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3468899999999999999766654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.82  E-value=0.068  Score=41.82  Aligned_cols=24  Identities=25%  Similarity=0.102  Sum_probs=20.8

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHh
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      -+|.++|.+++||||+..+|-...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            589999999999999999986443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.77  E-value=0.038  Score=42.36  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHH
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKF  112 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~  112 (212)
                      ..+++.++++.+|.|||||+++-.
T Consensus        36 ~l~~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          36 KVFSGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHTTCSCEEEECSSHHHHHHHHHH
T ss_pred             HHHcCCCEEEEcCCCCchhHHHHH
Confidence            345678999999999999998754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.76  E-value=0.086  Score=43.84  Aligned_cols=26  Identities=12%  Similarity=-0.106  Sum_probs=22.9

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ++|.|+|..|+||||+...|....|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            68999999999999999999766654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.50  E-value=0.091  Score=43.37  Aligned_cols=26  Identities=31%  Similarity=0.183  Sum_probs=22.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      ++|.|+|..|+||||+...|....|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            58999999999999999999755543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.08  Score=44.64  Aligned_cols=22  Identities=23%  Similarity=0.181  Sum_probs=18.5

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      .++++|+|.+|||||++.+.+.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            4679999999999999876554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.24  E-value=0.12  Score=42.73  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=35.9

Q ss_pred             cccCCcEEEEEccCCCCHHHHHHHHHH---HhC--CcEeehh----HHHHHHhCCCchhhh
Q 028227           89 TELKGTSVFLVGMNNAIKTHLGKFLAD---ALR--YYYFDSD----SLVFEAAGGESAAKA  140 (212)
Q Consensus        89 ~~l~~~~I~LvG~~GsGKTTvak~LA~---~lg--~~~~d~D----~l~~~~~G~~si~ei  140 (212)
                      +...+..+-|.|++|||||+++-.++.   +.|  +.|+|+.    ..+.+..| .+..++
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~G-vd~d~i  112 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALG-VNTDEL  112 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT-CCGGGC
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhC-CCchhE
Confidence            555788999999999999999988864   334  5677765    33444556 555544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.86  E-value=0.15  Score=42.49  Aligned_cols=34  Identities=24%  Similarity=0.103  Sum_probs=29.3

Q ss_pred             HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        84 ~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      +.-+.+.-+|+++.|+|.+|+|||+++..++...
T Consensus        59 ID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          59 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4456777789999999999999999999998763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.56  E-value=0.16  Score=43.70  Aligned_cols=22  Identities=18%  Similarity=0.083  Sum_probs=20.2

Q ss_pred             CcEEEEEccCCCCHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      +-+|.|+|.+|+||||+...|-
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            5789999999999999999883

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.55  E-value=0.2  Score=40.59  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+..|.++|+|.+||||+...|..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CceEEEEEecCccchhhhhhhhhc
Confidence            456799999999999999999975

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.28  E-value=0.22  Score=34.73  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=28.5

Q ss_pred             CCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        92 ~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      +.++|+|+|..|+|.|.+|+.|.+ .|+.+-=+|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGSD~   40 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLN-EGYQISGSDI   40 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEEES
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEEeC
Confidence            468999999999999999999976 5887765553

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.02  E-value=0.13  Score=41.34  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHH
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      .+.++|+||+.+||||+-|.+|-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46789999999999999999874

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.06  E-value=0.2  Score=41.36  Aligned_cols=52  Identities=13%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHHH---HhC--CcEeehhH----HHHHHhCCCchhhh
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLAD---ALR--YYYFDSDS----LVFEAAGGESAAKA  140 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA~---~lg--~~~~d~D~----l~~~~~G~~si~ei  140 (212)
                      -+...+..+.|.|++|||||+++-.++.   ..|  +.|+|+..    .+-+..| .+..++
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~G-vD~d~i  115 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLG-VDTDSL  115 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHT-CCGGGC
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhC-CCHHHe
Confidence            4777799999999999999999977654   334  45667644    2333456 555553

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.80  E-value=0.16  Score=40.58  Aligned_cols=22  Identities=27%  Similarity=0.137  Sum_probs=19.5

Q ss_pred             cEEEEEccCCCCHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ..++|+||+.+||||+-|.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4689999999999999998874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=86.73  E-value=0.26  Score=39.12  Aligned_cols=26  Identities=15%  Similarity=0.026  Sum_probs=22.6

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      -+|+++|...+||||+...|....|.
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999777765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.57  E-value=0.19  Score=41.04  Aligned_cols=30  Identities=17%  Similarity=0.063  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHHH----HhCCcEeeh
Q 028227           95 SVFLVGMNNAIKTHLGKFLAD----ALRYYYFDS  124 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA~----~lg~~~~d~  124 (212)
                      .|.|+|.|.+||||+=.+|-.    .-+|||.-.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~   35 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTI   35 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-------------
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcc
Confidence            588999999999999999942    234565443

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.47  Score=38.24  Aligned_cols=42  Identities=10%  Similarity=0.006  Sum_probs=29.6

Q ss_pred             CcchHHHHHHHHHhccc---CCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           75 DPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        75 d~~~~lk~~~~~~~~~l---~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      .+..+.++..+++...+   ++...+|.|..|||||-|+-..+..
T Consensus        55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            34445555555653333   3568899999999999999887754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=86.19  E-value=0.22  Score=40.29  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=22.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH----hCCcEee
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA----LRYYYFD  123 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~----lg~~~~d  123 (212)
                      .+|-|+|.|.+||||+=.+|...    -+|||..
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~t   36 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCT   36 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCC
Confidence            57899999999999999999742    3455554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.76  E-value=0.18  Score=39.41  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=20.2

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhC
Q 028227           96 VFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        96 I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      |+++|...||||..|..|+...+
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCS
T ss_pred             EEEECCCCccHHHHHHHHHhcCC
Confidence            78999999999999999986544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.60  E-value=0.24  Score=38.48  Aligned_cols=23  Identities=22%  Similarity=0.141  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      -+|.++|...+||||+...|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            58999999999999999988643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=85.33  E-value=0.26  Score=37.36  Aligned_cols=20  Identities=35%  Similarity=0.315  Sum_probs=18.7

Q ss_pred             EEEEEccCCCCHHHHHHHHH
Q 028227           95 SVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        95 ~I~LvG~~GsGKTTvak~LA  114 (212)
                      +|.++|...+|||||...|.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeccCCcHHHHHHHHH
Confidence            78999999999999999995

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.04  E-value=0.36  Score=40.15  Aligned_cols=33  Identities=12%  Similarity=0.072  Sum_probs=28.1

Q ss_pred             HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHH
Q 028227           84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADA  116 (212)
Q Consensus        84 ~~~~~~~l~~~~I~LvG~~GsGKTTvak~LA~~  116 (212)
                      +.-+.+..+|+++.|+|.+|+|||++...++..
T Consensus        59 ID~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          59 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             EecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            455678889999999999999999999888754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.96  E-value=0.35  Score=38.68  Aligned_cols=26  Identities=15%  Similarity=0.065  Sum_probs=23.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      -+|.++|..++||||+...|.-.+|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            48999999999999999999877775

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.70  E-value=0.46  Score=38.99  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=30.9

Q ss_pred             CcchHHHHHHHHHhccc---CCcEEEEEccCCCCHHHHHHHHHH
Q 028227           75 DPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLAD  115 (212)
Q Consensus        75 d~~~~lk~~~~~~~~~l---~~~~I~LvG~~GsGKTTvak~LA~  115 (212)
                      ....+-++.+.++..++   ++..-+|.|..|||||-|+-..+.
T Consensus        83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHH
Confidence            44566777777775554   356789999999999999887764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.74  E-value=0.33  Score=39.17  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=24.4

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHhCCcEeehhH
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d~D~  126 (212)
                      +.-..|+++|..++||||+..+|   +|.+++-.+.
T Consensus        22 ~~lP~ivVvG~~ssGKSSliNaL---lG~~~lP~~~   54 (306)
T d1jwyb_          22 LDLPQIVVVGSQSSGKSSVLENI---VGRDFLPRGS   54 (306)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHH---HTSCCCCC--
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHH---hCCCCCCCCC
Confidence            33347999999999999999999   5666654433

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.63  E-value=0.41  Score=37.39  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=22.7

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhCC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg~  119 (212)
                      -+|.++|.-++||||+...|.-..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            48999999999999999988766665

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.10  E-value=0.37  Score=39.28  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHH-----hCCcEeehh
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADA-----LRYYYFDSD  125 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~-----lg~~~~d~D  125 (212)
                      ...|-|+|.|.|||||+=.+|-..     -+|||...|
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~   47 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID   47 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCcc
Confidence            357999999999999999999642     346665433

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.43  E-value=0.4  Score=36.67  Aligned_cols=21  Identities=24%  Similarity=0.203  Sum_probs=19.3

Q ss_pred             cEEEEEccCCCCHHHHHHHHH
Q 028227           94 TSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA  114 (212)
                      -+|.++|...+||||+...|.
T Consensus         9 ini~iiGhVd~GKSTL~~~L~   29 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAIT   29 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEEccCCcHHHHHHHHH
Confidence            489999999999999999885

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.43  E-value=0.43  Score=38.16  Aligned_cols=28  Identities=14%  Similarity=0.110  Sum_probs=22.7

Q ss_pred             CcEEEEEccCCCCHHHHHHHHHHHhCCcEee
Q 028227           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (212)
Q Consensus        93 ~~~I~LvG~~GsGKTTvak~LA~~lg~~~~d  123 (212)
                      ...|+++|.-++||||+..+|   +|.+++-
T Consensus        26 ~P~ivvvG~~SsGKSsliNaL---lg~~~lP   53 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENF---VGRDFLP   53 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHH---HTSCCSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHH---hCCCcCC
Confidence            346899999999999999999   4666543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.50  E-value=0.42  Score=40.58  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCCHHHHHHHHHHHhC
Q 028227           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (212)
Q Consensus        94 ~~I~LvG~~GsGKTTvak~LA~~lg  118 (212)
                      ++|.|+|..++||||+...|-...|
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            6899999999999999999976555

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.38  E-value=0.84  Score=35.33  Aligned_cols=26  Identities=19%  Similarity=0.114  Sum_probs=20.1

Q ss_pred             hcccCCcEEEEEccCCCCHHHHHHHHH
Q 028227           88 STELKGTSVFLVGMNNAIKTHLGKFLA  114 (212)
Q Consensus        88 ~~~l~~~~I~LvG~~GsGKTTvak~LA  114 (212)
                      ...+.|+.+++..+.|||||. |-.|.
T Consensus        42 p~il~g~dvl~~a~TGsGKT~-a~~lp   67 (212)
T d1qdea_          42 MPIIEGHDVLAQAQSGTGKTG-TFSIA   67 (212)
T ss_dssp             HHHHTTCCEEEECCTTSSHHH-HHHHH
T ss_pred             HHHHcCCCEEeecccccchhh-hhHhh
Confidence            345789999999999999965 44443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.35  E-value=0.58  Score=43.08  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 028227           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (212)
Q Consensus        91 l~~~~I~LvG~~GsGKTTvak~LA~~l  117 (212)
                      -+.++|+|.|-+|||||+-+|.+-+.|
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999997755