Citrus Sinensis ID: 028237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS
Secondary Structure (PSIPRED)
ccccEEEEEEEEcccccHHHHHHHHHHHcccccccccccEEEEcEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSYAYLFKYIIIGdtgvgksclllqftdkrfqpvhdltiGVEFGarmitidnkpiklQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDgvfdvsnesygikvgyggipgpsggrdgsssqaggccs
Flexible Loop (DISEMBL)
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGipgpsggrdgsssqaggccs
Low Complexity Region (SEG)
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVgyggipgpsggrdgsssQAGGCCS
Disordered region (IsUnstruct)
**YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST***EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGI*******************
Disordered Region (DISOPRED)
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK************************************AGGCCS
Disordered Region (DISEMBL)
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR**********AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGP****************
Disordered Region (DISPRO)
*SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
P92963	211	Ras-related protein RABB1	yes	no	0.995	0.995	0.990	1e-122
Q38922	211	Ras-related protein RABB1	no	no	0.995	0.995	0.866	1e-107
P49104	210	Ras-related protein Rab-2	N/A	no	0.909	0.914	0.958	1e-107
P49103	209	Ras-related protein Rab-2	N/A	no	0.895	0.904	0.962	1e-106
P36863	213	GTP-binding protein yptV4	N/A	no	0.995	0.985	0.859	1e-104
Q39570	213	GTP-binding protein YPTC4	N/A	no	0.995	0.985	0.859	1e-104
O23561	205	Ras-related protein RABB1	no	no	0.962	0.990	0.810	2e-96
Q05975	212	Ras-related protein Rab-2	N/A	no	0.919	0.915	0.835	8e-93
P53994	212	Ras-related protein Rab-2	yes	no	0.995	0.990	0.778	2e-92
Q5R6B6	212	Ras-related protein Rab-2	yes	no	0.890	0.886	0.845	4e-92

>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1

 Score =  436 bits (1120), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/210 (99%), Positives = 209/210 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
           ESYGIKVGYGGIPGPSGGRDGS+SQ GGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/210 (86%), Positives = 196/210 (93%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I + IQDGVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
           ES GIK+GYG   G +GGRDG+ SQ GGCC
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/193 (95%), Positives = 188/193 (97%), Gaps = 1/193 (0%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTA  IYKKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIP 193
           ESYGIKVGY  IP
Sbjct: 181 ESYGIKVGY-AIP 192

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/189 (96%), Positives = 185/189 (97%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI IDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTA  IYKKIQDGVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGY 189
           ESYGIKVGY
Sbjct: 181 ESYGIKVGY 189

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/213 (85%), Positives = 191/213 (89%), Gaps = 3/213 (1%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  IYKKIQDGVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYG-GIPGPSGGR--DGSSSQAGGCC 210
           ESYGIKVGYG G  GP   +  +G + ++  CC
Sbjct: 181 ESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1

 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/213 (85%), Positives = 192/213 (90%), Gaps = 3/213 (1%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  IYKKIQDGVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGY-GGIPGPSGGR--DGSSSQAGGCC 210
           ESYGIKVGY GG  GP   +  +G ++++  CC
Sbjct: 181 ESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|O23561|RAB1A_ARATH Ras-related protein RABB1a OS=Arabidopsis thaliana GN=RABB1A PE=2 SV=1

 Score =  351 bits (900), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/211 (81%), Positives = 183/211 (86%), Gaps = 8/211 (3%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAY FKYIIIGDTGVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ ITIDNKPIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHLASWLE+ARQHA+ NMT MLIGNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDL  +R VSTEEGEQFA+EHGLIFMEASAKTA NVEEAF++TAATIYK+IQDGV D +N
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQA-GGCC 210
           E        G  PGP GG+D SSSQ   GCC
Sbjct: 181 EP-------GITPGPFGGKDASSSQQRRGCC 204

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1

 Score =  339 bits (869), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 172/194 (88%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQDGVFD++N
Sbjct: 121 SDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINN 180

Query: 181 ESYGIKVGYGGIPG 194
           E+ GIK+G    P 
Sbjct: 181 EANGIKIGPQHSPA 194

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Lymnaea stagnalis (taxid: 6523)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  338 bits (867), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/212 (77%), Positives = 178/212 (83%), Gaps = 2/212 (0%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 ESYGIKVG--YGGIPGPSGGRDGSSSQAGGCC 210
           E+ GIK+G  +       G   G     GGCC
Sbjct: 181 EANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q5R6B6|RAB2A_PONAB Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1

 Score =  337 bits (863), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 159/188 (84%), Positives = 171/188 (90%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct: 1   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct: 121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query: 181 ESYGIKVG 188
           E+ GIK+G
Sbjct: 181 EANGIKIG 188

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
224089509	211	predicted protein [Populus trichocarpa]	1.0	1.0	0.990	1e-120
449443494	211	PREDICTED: ras-related protein RABB1c-li	1.0	1.0	0.981	1e-120
15235981	211	RAB GTPase homolog B1C [Arabidopsis thal	0.995	0.995	0.990	1e-120
356555789	211	PREDICTED: ras-related protein RABB1c-li	1.0	1.0	0.985	1e-120
388495178	211	unknown [Lotus japonicus]	1.0	1.0	0.981	1e-120
225447452	211	PREDICTED: ras-related protein RABB1c [V	1.0	1.0	0.981	1e-119
224124750	211	predicted protein [Populus trichocarpa]	1.0	1.0	0.981	1e-119
255637328	211	unknown [Glycine max]	1.0	1.0	0.981	1e-119
351726934	211	guanine nucleotide regulatory protein [G	1.0	1.0	0.981	1e-119
16755592	211	small GTPase Rab2 [Nicotiana tabacum]	1.0	1.0	0.971	1e-119

>gi|224089509|ref|XP_002308739.1| predicted protein [Populus trichocarpa] gi|118487262|gb|ABK95459.1| unknown [Populus trichocarpa] gi|222854715|gb|EEE92262.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/211 (99%), Positives = 210/211 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG S+QAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGGSAQAGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443494|ref|XP_004139512.1| PREDICTED: ras-related protein RABB1c-like [Cucumis sativus]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/211 (98%), Positives = 211/211 (100%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG+++Q+GGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGATAQSGGCCS 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235981|ref|NP_193450.1| RAB GTPase homolog B1C [Arabidopsis thaliana] gi|297800394|ref|XP_002868081.1| hypothetical protein ARALYDRAFT_493160 [Arabidopsis lyrata subsp. lyrata] gi|75279776|sp|P92963.1|RAB1C_ARATH RecName: Full=Ras-related protein RABB1c; Short=AtRABB1c; AltName: Full=Ras-related protein Rab2A; Short=AtRab2A gi|1765896|emb|CAA70498.1| Rab2-like protein [Arabidopsis thaliana] gi|5281023|emb|CAB45962.1| GTP-binding RAB2A like protein [Arabidopsis thaliana] gi|7268468|emb|CAB80988.1| GTP-binding RAB2A like protein [Arabidopsis thaliana] gi|27311815|gb|AAO00873.1| GTP-binding RAB2A like protein [Arabidopsis thaliana] gi|30023652|gb|AAP13359.1| At4g17170 [Arabidopsis thaliana] gi|297313917|gb|EFH44340.1| hypothetical protein ARALYDRAFT_493160 [Arabidopsis lyrata subsp. lyrata] gi|332658457|gb|AEE83857.1| RAB GTPase homolog B1C [Arabidopsis thaliana]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/210 (99%), Positives = 209/210 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
           ESYGIKVGYGGIPGPSGGRDGS+SQ GGCC
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555789|ref|XP_003546212.1| PREDICTED: ras-related protein RABB1c-like [Glycine max] gi|1370176|emb|CAA98165.1| RAB2A [Lotus japonicus]

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/211 (98%), Positives = 209/211 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG S+ AGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495178|gb|AFK35655.1| unknown [Lotus japonicus]

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/211 (98%), Positives = 209/211 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP+KLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPVKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG S+ AGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447452|ref|XP_002263290.1| PREDICTED: ras-related protein RABB1c [Vitis vinifera] gi|296085073|emb|CBI28488.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/211 (98%), Positives = 209/211 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAFI TA+TIYKKIQ+GVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFISTASTIYKKIQEGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124750|ref|XP_002329939.1| predicted protein [Populus trichocarpa] gi|118484431|gb|ABK94092.1| unknown [Populus trichocarpa] gi|222871961|gb|EEF09092.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/211 (98%), Positives = 209/211 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 SDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPG SGGRDG+S+QAGGCCS
Sbjct: 181 ESYGIKVGYGGIPGSSGGRDGASAQAGGCCS 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637328|gb|ACU18994.1| unknown [Glycine max]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/211 (98%), Positives = 208/211 (98%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG  + AGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGPFASAGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726934|ref|NP_001238167.1| guanine nucleotide regulatory protein [Glycine max] gi|1208537|gb|AAA90955.1| guanine nucleotide regulatory protein [Glycine max]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/211 (98%), Positives = 208/211 (98%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE ARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEHARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG S+ AGGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGPSASAGGCCS 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16755592|gb|AAL28022.1| small GTPase Rab2 [Nicotiana tabacum]

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/211 (97%), Positives = 210/211 (99%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKE+GLIFMEASAKTAQNVEEAFI+TA+TIYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIRTASTIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
           ESYGIKVGYGGIPGPSGGRDG++SQ GGCCS
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGAASQGGGCCS 211

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2130624	211	RABB1C "AT4G17170" [Arabidopsi	0.995	0.995	0.914	6.4e-99
TAIR|locus:2125384	211	GB2 "GTP-binding 2" [Arabidops	0.995	0.995	0.819	1.9e-90
UNIPROTKB|Q90965	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.768	1.2e-83
UNIPROTKB|G1K288	232	RAB2A "Ras-related protein Rab	0.995	0.905	0.768	1.2e-83
UNIPROTKB|P61105	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.768	1.2e-83
UNIPROTKB|P61019	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.768	1.2e-83
UNIPROTKB|Q4R4X6	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.768	1.2e-83
UNIPROTKB|Q5R6B6	212	RAB2A "Ras-related protein Rab	0.995	0.990	0.768	1.2e-83
MGI|MGI:1928750	212	Rab2a "RAB2A, member RAS oncog	0.995	0.990	0.768	1.2e-83
ZFIN|ZDB-GENE-011212-2	212	rab2a "RAB2A, member RAS oncog	0.995	0.990	0.768	1.2e-83

TAIR|locus:2130624 RABB1C "AT4G17170" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 192/210 (91%), Positives = 192/210 (91%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
             CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN
Sbjct:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQAGGCC 210
             ESYGIKV                 Q GGCC
Sbjct:   181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

TAIR|locus:2125384 GB2 "GTP-binding 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 172/210 (81%), Positives = 184/210 (87%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D +PIKLQIW
Sbjct:     1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
             CDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I + IQDGVFDVSN
Sbjct:   121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQAGGCC 210
             ES GIK+                 Q GGCC
Sbjct:   181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q90965 RAB2A "Ras-related protein Rab-2A" [Gallus gallus (taxid:9031)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNATLAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

UNIPROTKB|G1K288 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:    21 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 80

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    81 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 140

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   141 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 200

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   201 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 232

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61105 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61019 RAB2A "Ras-related protein Rab-2A" [Homo sapiens (taxid:9606)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|Q4R4X6 RAB2A "Ras-related protein Rab-2A" [Macaca fascicularis (taxid:9541)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q5R6B6 RAB2A "Ras-related protein Rab-2A" [Pongo abelii (taxid:9601)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:1928750 Rab2a "RAB2A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

ZFIN|ZDB-GENE-011212-2 rab2a "RAB2A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 163/212 (76%), Positives = 175/212 (82%)

Query:     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
             M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIW
Sbjct:     1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
             DTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK
Sbjct:    61 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120

Query:   121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
              DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++N
Sbjct:   121 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180

Query:   181 ESYGIKVXXXXXXXXXXXXXXXXXQ--AGGCC 210
             E+ GIK+                 Q   GGCC
Sbjct:   181 EANGIKIGPQHAATNSTMGGSQGGQQAGGGCC 212

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05975	RAB2_LYMST	No assigned EC number	0.8350	0.9194	0.9150	N/A	no
O23561	RAB1A_ARATH	No assigned EC number	0.8104	0.9620	0.9902	no	no
P61105	RAB2A_CANFA	No assigned EC number	0.8457	0.8909	0.8867	yes	no
P49104	RAB2B_MAIZE	No assigned EC number	0.9585	0.9099	0.9142	N/A	no
P49103	RAB2A_MAIZE	No assigned EC number	0.9629	0.8957	0.9043	N/A	no
P92963	RAB1C_ARATH	No assigned EC number	0.9904	0.9952	0.9952	yes	no
Q39570	YPTC4_CHLRE	No assigned EC number	0.8591	0.9952	0.9859	N/A	no
P53994	RAB2A_MOUSE	No assigned EC number	0.7783	0.9952	0.9905	yes	no
P05712	RAB2A_RAT	No assigned EC number	0.8404	0.8909	0.8867	yes	no
Q38922	RAB1B_ARATH	No assigned EC number	0.8666	0.9952	0.9952	no	no
Q01971	RAB2A_RABIT	No assigned EC number	0.8457	0.8909	0.8867	yes	no
Q90965	RAB2A_CHICK	No assigned EC number	0.8457	0.8909	0.8867	yes	no
Q4R4X6	RAB2A_MACFA	No assigned EC number	0.8457	0.8909	0.8867	N/A	no
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.8457	0.8909	0.8867	yes	no
P61019	RAB2A_HUMAN	No assigned EC number	0.8457	0.8909	0.8867	yes	no
Q8WUD1	RAB2B_HUMAN	No assigned EC number	0.7638	0.9952	0.9722	no	no
P17610	YPT3_SCHPO	No assigned EC number	0.4759	0.9857	0.9719	yes	no
P36863	YPTV4_VOLCA	No assigned EC number	0.8591	0.9952	0.9859	N/A	no
P59279	RAB2B_MOUSE	No assigned EC number	0.8351	0.8909	0.8703	no	no
P36409	RAB2A_DICDI	No assigned EC number	0.7523	0.9620	0.9806	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-162
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-133
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-102
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-94
pfam00071	162	pfam00071, Ras, Ras family	6e-92
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-89
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-89
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-81
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-79
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-78
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-73
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-72
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-68
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-66
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-66
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-62
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-59
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-57
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-57
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	9e-53
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-52
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-52
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-51
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-50
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-49
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-49
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-49
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-48
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-48
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-46
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-45
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-45
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-40
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-40
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-39
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-38
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	8e-38
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-37
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-36
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-35
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-35
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	9e-35
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-33
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-32
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-32
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-32
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-32
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-31
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-31
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-31
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-31
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-30
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-30
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	9e-29
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-27
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-24
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-23
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-23
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-23
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-21
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-21
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-21
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-20
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-19
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-19
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-18
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-17
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	6e-16
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	9e-16
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-14
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-14
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	8e-14
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-12
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	9e-12
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	9e-12
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-11
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	6e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	5e-09
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	9e-09
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	9e-09
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-08
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	6e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	8e-07
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	9e-07
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-06
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-06
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-06
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	9e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-05
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	8e-05
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-04
cd00880	161	cd00880, Era_like, E	6e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	6e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.002

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  445 bits (1147), Expect = e-162
 Identities = 205/210 (97%), Positives = 206/210 (98%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA IYKKIQDGVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSN 180

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
           ESYGIKVGYG IPG SGGRDG+SSQ GGCC
Sbjct: 181 ESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  369 bits (950), Expect = e-133
 Identities = 151/168 (89%), Positives = 154/168 (91%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+N+NMTIMLIGNKCD
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           L  RR VS EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY K
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  291 bits (747), Expect = e-102
 Identities = 100/164 (60%), Positives = 123/164 (75%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK I+IGD+GVGKS LL +FTD +F   +  TIGV+F  + I +D K +KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRSIT SYYRGA GALLVYDIT RE+F +L +WL++ R++A+ N+ IML+GNK DL  +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           R VS EE E FA+EHGL F E SAKT  NVEEAF + A  I K+
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  272 bits (698), Expect = 1e-94
 Identities = 92/158 (58%), Positives = 120/158 (75%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK ++IGD+GVGK+ LLL+F D +F   +  TIGV+F ++ I +D K +KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRSIT SYYRGA GA+LVYD+T RE+F +L  WL + +++A  N+ I+L+GNK DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           R VSTEE +QFAKE+GL+F E SAKT +NV+EAF   A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  265 bits (681), Expect = 6e-92
 Identities = 92/162 (56%), Positives = 118/162 (72%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD GVGKS LL++FT  +F   +  TIGV+F  + I +D K +KLQIWDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
           FR++   YYRGA G LLVYDIT R++F ++  WLE+  +HA+ N+ I+L+GNKCDL  +R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            VSTEEGE  AKE GL FME SAKT +NVEEAF + A  I K
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  258 bits (662), Expect = 3e-89
 Identities = 109/166 (65%), Positives = 132/166 (79%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I ++ + IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I LIGNK DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            +R V+ EE +QFA E+GL+F+E SAKT +NVE+AF++TA  IY+ 
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  258 bits (661), Expect = 6e-89
 Identities = 95/164 (57%), Positives = 118/164 (71%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I ID K IK QIWDTAG
Sbjct: 2   YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE +R+IT +YYRGA GALLVYDIT++ TF ++  WL++ R HA++N+ IML+GNK DL 
Sbjct: 62  QERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           H RAV TEE + FA+++GL F+E SA    NVEEAF +    IY
Sbjct: 122 HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  238 bits (609), Expect = 5e-81
 Identities = 92/166 (55%), Positives = 122/166 (73%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           YLFK ++IGD+GVGKSCLLL+F++  F P    TIG++F  R I +D K IKLQIWDTAG
Sbjct: 2   YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FR+IT SYYRGA G +LVYDIT  ++F ++ +W+ +  +HA+ ++  ML+GNKCD+ 
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDME 121

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            +R VS EEGE  A+E+G+ F+E SAK   NVEEAF+  A  I KK
Sbjct: 122 EKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  233 bits (597), Expect = 3e-79
 Identities = 96/161 (59%), Positives = 124/161 (77%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK++IIG  G GKSCLL QF + +F+   + TIGVEFG+R++ +  K +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+TRSYYRGAAGALLVYDIT RE+FN L +WL DAR  A+ ++ I+L+GNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R V+  E  +FA+E+GL+F+E SA T +NVEEAF+K A +I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  232 bits (594), Expect = 1e-78
 Identities = 88/166 (53%), Positives = 121/166 (72%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            ++ V   E ++FA E G+ F+E SAK A NVEEAF+  A  I K+
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  219 bits (560), Expect = 6e-73
 Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 4/210 (1%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTA 63
           Y F+ I+IGD+ VGKS LL +FT+ RF  V D T+GV+F +R+I I     IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCD 122
           GQE FRSITRSYYR + G LLV+DIT RE+F H+  WLE+AR H   +    +L+G+KCD
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182
           L  +R V+ EE E+ AK+ G+ ++E SA+T  NVEEAF      IY++I+ G     +  
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 183 YGIKVGY--GGIPGPSGGRDGSSSQAGGCC 210
            G+K G+  G            +S    CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  216 bits (552), Expect = 3e-72
 Identities = 74/162 (45%), Positives = 108/162 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD+ VGKS ++L+F    F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +RS+   YYRGAA A++VYDIT  E+F    SW+++ ++H   N+ I L GNK DL  +
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           R VSTEE +++A E+GL+FME SAKT +NV E F + A  + 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  206 bits (526), Expect = 2e-68
 Identities = 81/162 (50%), Positives = 115/162 (70%), Gaps = 2/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K ++IGD+GVGKS LLL+FTD  F      TIGV+F  + +T+D K +KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAH 125
            FR++T SYYRGA G +LVYD+TRR+TF++L +WL +   ++ N +   ML+GNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
            R V+ EEG++FA++H ++F+E SAKT   V++AF +    I
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  203 bits (518), Expect = 2e-66
 Identities = 98/212 (46%), Positives = 131/212 (61%), Gaps = 8/212 (3%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++ K +K QIWDT
Sbjct: 9   YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA++N+ IM+ GNK D
Sbjct: 69  AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182
           L H R+V+ E+G+  A++ GL F+E SA  A NVE+AF      IY  I          +
Sbjct: 129 LNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAA 188

Query: 183 YGIKVGYGGIPGPSGG---RDGSSSQAGGCCS 211
                   G+PG        D S +   GCCS
Sbjct: 189 -----ANSGLPGQGTTINVADTSGNNKRGCCS 215

Length = 216

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  201 bits (512), Expect = 2e-66
 Identities = 77/161 (47%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           +LFK I+IGD+ VGK+C++ +F    F      TIGV+F  + + I  K +KLQIWDTAG
Sbjct: 2   FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FR+IT+SYYR A GA++ YDITRR +F  +  W+E+  ++  +N+ ++LIGNKCDL 
Sbjct: 62  QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121

Query: 125 HRRAVSTEEGEQFAKEHGLIF-MEASAKTAQNVEEAFIKTA 164
            +R V  EE    A+ +G++  +E SAK + NVEEAF+  A
Sbjct: 122 EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  190 bits (486), Expect = 2e-62
 Identities = 68/161 (42%), Positives = 109/161 (67%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K + +GD  VGK+ ++ +F    F   +  TIG++F ++ + +D+K ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R ++ A++VYDIT R++F++   W++D R     ++ I+L+GNK DL+ +
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VSTEEGE+ AKE+  +F+E SAK   NV++ F K A  +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  182 bits (464), Expect = 6e-59
 Identities = 79/163 (48%), Positives = 107/163 (65%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y +LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + + I  + IKLQIWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+AN  +  +L+GNK D
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165
           LA RR VS +  E+F+    + ++E SAK + NVE+ F+  A 
Sbjct: 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC 166

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  178 bits (454), Expect = 3e-57
 Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 5/163 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + +T+D++ + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCD 122
            F+S+  ++YRGA   +LVYD+T  ++F  L SW ++    A+     N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTA 164
           L  +R VST++ +Q+ K  G I + E SAK A NV++AF   A
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIA 163

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  178 bits (454), Expect = 3e-57
 Identities = 76/170 (44%), Positives = 119/170 (70%), Gaps = 2/170 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           FK +++GD+GVGK+CLL++F D  F       T+G++F  +++T+D   +KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A +++ IML+GNK D++ 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI-YKKIQDG 174
            R V  E+GE+ AKE+G+ FME SAKT  NVE AF   A  + ++ ++  
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQP 170

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  168 bits (426), Expect = 9e-53
 Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y +LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R + I+ + +KLQIWDT
Sbjct: 3   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDT 62

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL++  Q+ +    + L+GNK D
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKV-LVGNKND 121

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
              R+ V TE+  +FA + G+   E SAK   NVEE F
Sbjct: 122 DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  167 bits (423), Expect = 2e-52
 Identities = 85/170 (50%), Positives = 111/170 (65%), Gaps = 7/170 (4%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQI 59
            Y   FK ++IGD+GVGKS LL+ F       V DL  TIGV+F  + +T+  K +KL I
Sbjct: 10  GYDLSFKILLIGDSGVGKSSLLVSFIS---SSVEDLAPTIGVDFKIKQLTVGGKRLKLTI 66

Query: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLI 117
           WDTAGQE FR++T SYYR A G +LVYD+TRRETF +L+  W ++   ++ N +   ML+
Sbjct: 67  WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLV 126

Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           GNK D    R VS EEG   AKEHG +F+E SAKT +NVE+ F + A  I
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176

Length = 211

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  164 bits (417), Expect = 7e-52
 Identities = 70/163 (42%), Positives = 98/163 (60%), Gaps = 5/163 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R + ID + IK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 67  SFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLA 124
            FR S+ + YYR     + VYD+T   +F+ L SW+E+  QH+  N    +L+GNKCDL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAK---TAQNVEEAFIKTA 164
            +  V T+  ++FA  H +   E SAK      +VE  F+  A
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  162 bits (413), Expect = 2e-51
 Identities = 62/161 (38%), Positives = 99/161 (61%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G+  VGK+ L+L++ + +F   H+ T    F  + + I  K I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + ++   YYR A GA+LVYDIT  ++F  +  W+++ +Q    N++++++GNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS  E E++AK  G    E SAKT + +EE F+  A  +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  161 bits (408), Expect = 1e-50
 Identities = 70/158 (44%), Positives = 105/158 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           F+ ++IGD+GVGK+CLL +FTD  F   H  TIGV+F  + I +D   +++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++A   +  +LIGNK D   +
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           R V  E+G + AKE+G+ F E SA T +N++E+F +  
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  158 bits (401), Expect = 1e-49
 Identities = 71/165 (43%), Positives = 103/165 (62%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK +IIG++ VGK+  L ++ D  F      T+G++F  + +  ++K IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            R VS E G Q A + G  F EASAK   NV++ F +    I  K
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  159 bits (405), Expect = 2e-49
 Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 17/211 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQ 65
           FK ++IGD GVGK+ ++ ++    F   +  TIGV+F  ++I  D N  ++LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED--ARQHANANMTI--MLIGNKC 121
           E F  +TR YY+GA GA++V+D+TR  TF  +  W  D  ++        I  +L+ NKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 122 DLAHRR-AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 179
           DL   R A   E+ +QF KE+G I + E SAK   N+EEA       I K  +       
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 180 NESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
           +E   I +              ++S++  CC
Sbjct: 181 DEDNVIDLKQE----------TTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  158 bits (401), Expect = 5e-49
 Identities = 75/163 (46%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           IIIG  GVGK+ L+ +FTD  F      T+GV+F  + + +  K I+LQIWDTAGQE F 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129
           SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++L+GNK D    R +
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 123

Query: 130 STEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           + ++GE+FA++  G+ F EASAK   NV+E F+K    I KK+
Sbjct: 124 TRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  154 bits (391), Expect = 5e-48
 Identities = 65/155 (41%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++G  GVGKS L ++F    F   +D TI   +  + I +D +   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQ-IVVDGETYTLDILDTAGQEE 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHR 126
           F ++   Y R   G +LVY IT RE+F  + +  E   R     ++ I+L+GNKCDL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           R VSTEEGE  A+E G  F+E SAKT  N++E F 
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFN 154

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  154 bits (392), Expect = 6e-48
 Identities = 65/168 (38%), Positives = 105/168 (62%), Gaps = 11/168 (6%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP-------- 54
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  +++         
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 55  --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-N 111
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA   N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159
             I+LIGNK DL  +R VS  +  + A ++G+ + E SA T QNVE+A
Sbjct: 121 PDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  149 bits (379), Expect = 5e-46
 Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K I +G++GVGKSC++ ++ + RF   +  TIG+++G + +++ NK +++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-----NMTIMLIGNKCD 122
           +  +   +Y+   G LLVYD+T R++F  L SWL++ +Q         N+ +++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           L   RAVS +EG  +A+  G  + E SA T + V E F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  148 bits (376), Expect = 1e-45
 Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + I ID +   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y R   G LLVY IT R++F  +  + E   R     ++ I+L+GNKCDL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R VSTEEG++ A++ G  F+E SAK   NV+EAF
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  148 bits (376), Expect = 1e-45
 Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + I ID +   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y R   G LLVY IT R++F  +A + E   R     ++ I+L+GNKCDL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R VSTEEG++ A++ G  F+E SAK   NV+EAF
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  137 bits (346), Expect = 1e-40
 Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 18/192 (9%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            +   FK +++GD GVGK+ LL +     F   +  TIG    A+ I    + IKLQ+WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNK 120
           TAGQE +RS+   YYRGA G L+VYD T RE +      WLE+ R+ A  ++ I+L+GNK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLI---------------FMEASAK--TAQNVEEAFIKT 163
            DL   ++ S E   Q  +E  L+                +E SAK  T  NV E F + 
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 164 AATIYKKIQDGV 175
              + ++I+  V
Sbjct: 181 LRKLLEEIEKLV 192

Length = 219

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  134 bits (338), Expect = 5e-40
 Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID--NKPIKLQIWDTAGQ 65
           K I++G+  VGKS ++ +F    F   +  TIGV+F  + I +   ++ ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E F +IT++YYRGA   +LV+  T RE+F  + SW E        ++ ++L+  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165
           +  ++ EE E  AK   L     S K   NV E F   A 
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  132 bits (333), Expect = 3e-39
 Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 2/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K I++G  GVGKS L LQF    F   ++ T    +  + + +D + ++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQLNILDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            + +I  +Y+R   G LLV+ IT  E+F  LA + E   R   + N+ ++L+GNKCDL  
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           +R VS EE    A++ G+ ++E SAKT  NV++ F      I +
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  130 bits (328), Expect = 2e-38
 Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  +   ID +  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAH 125
            F ++   Y R   G LLV+ +T R +F  +  +     +  + +   ++L+GNK DL H
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           +R VS EEG++ A++  + ++E SAK   NV++AF
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  129 bits (325), Expect = 8e-38
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 4/180 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD GVGK+ L +Q     F   +D TI   +  + + +D +P  L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEE 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---HANANMTIMLIGNKCDLA 124
           + ++   + R   G +LVY IT R TF  +  + E  ++    + A++ IM++GNKCD  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYG 184
           + R VSTEEG   A+  G  F+EASAKT  NVE AF      + ++ Q G       +  
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKK 179

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  128 bits (323), Expect = 2e-37
 Identities = 60/163 (36%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y YL K++++GD+ VGK  +L    D   +  +   +G+++    I +D + +KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           T+GQ  F +I RSY RGA G +LVYDIT R +F+ +  W+++  +HA   +  +L+GN+ 
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRL 120

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
            LA +R V+TE+ + +A+ +G+ F E S     N+ E+F + A
Sbjct: 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  125 bits (315), Expect = 2e-36
 Identities = 57/130 (43%), Positives = 85/130 (65%)

Query: 38  TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97
           TIG++F ++ + +D  P++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F + 
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT 71

Query: 98  ASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157
             W++D       ++ I L+GNK DL   R V+ EEG Q A+E+  +F E SAK   N++
Sbjct: 72  TKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131

Query: 158 EAFIKTAATI 167
             F K AA +
Sbjct: 132 VLFKKIAAKL 141

Length = 176

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  122 bits (307), Expect = 2e-35
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFT-DKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
            K +I+GD  VGKS LL +   +K     +       +   +I  D K  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDL 123
           E + +I R YYR    +L V+DI     +    L    ++   HA + + I+L+GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
              + + T     FAK +G   +  SA+T +N++ AF
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  121 bits (306), Expect = 3e-35
 Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I  R++F  + ++ E  ++  +++ + ++L+GNKCDLA 
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R  VST +G+  AK +G+ ++E SAKT Q VEEAF      I
Sbjct: 121 RT-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  121 bits (306), Expect = 3e-35
 Identities = 61/160 (38%), Positives = 96/160 (60%), Gaps = 6/160 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++GD GVGKS L+ ++   +F      TIGVEF  + + +D   + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN----MTIMLIGNKC 121
           E FRS+   +YRG+   LL + +   ++F +L++W ++   +A+         +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 122 DLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           D+  R+ VSTEE + + +++G   + E SAK A NV  AF
Sbjct: 125 DIPERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  122 bits (307), Expect = 4e-35
 Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  +   ID +   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAH 125
            + ++   Y R   G L VY IT R +F  +AS+ E   R      + ++L+GNKCDL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
            R VST EG++ AK  G+ F+E SAK   NV+EAF +    I K +++
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172

Length = 189

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  120 bits (303), Expect = 9e-35
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F S+   Y +   G ++VY +  ++TF  +    +   R      + I+L+GNK DL  
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162
            R VS+ EG   A+E G  FME SAK+   V E F +
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE 157

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  117 bits (295), Expect = 3e-33
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 15/166 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  +T+D K + L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSAN-VTVDGKQVNLGLWDTAGQEE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      LL + +    +F ++ + W  + + +   N+ I+L+G K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVGTKIDLRDD 119

Query: 124 --------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                     ++ ++ EEGE+ AKE G + +ME SA T + ++E F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  115 bits (289), Expect = 1e-32
 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + I +D +   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT +++FN L    E   R     ++ ++L+GNKCDL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 126 RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 161
            R VS EEG+  A++ G   F+E SAK+  NV+E F 
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFY 157

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  114 bits (287), Expect = 2e-32
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 3/165 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K I++GD  VGK+CL+ +F    F   +  TIGV+F      +   P  LQ+WDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHR 126
           F+ I  +YYRGA   ++V+D+T   +  H   WLEDA +++  +++ + L+G K DL+  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 127 RAVSTEEGE--QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
              +  E +  + A+E    +   SA T +NV + F + A+  ++
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFE 166

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  114 bits (288), Expect = 3e-32
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           K +++G   VGK+ L+ ++   RF   P  + TIG  F A+ + +  + + L IWDTAG 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E + +++R YYRGA  A++ YD+T   +F     W+++ +     +  I L G K DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIE 119

Query: 126 ----RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
                R V   + + FA E      E S+KT QNV+E F K A
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  113 bits (285), Expect = 8e-32
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K  ++G   VGKS L +QF +  F   +  TI   F +++IT   +   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA--RQHANANMTIMLIGNKCDLAH 125
           +  + + Y  G  G +LVY +T R++F  +   + D         ++ I+L+GNK DL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R VS EEG++ A+  G  F+E+SAK  +NVEEAF
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  112 bits (282), Expect = 1e-31
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G +LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
            R V  E+G+  A++ G  F+E SAK   NV E F 
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFY 156

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  112 bits (282), Expect = 2e-31
 Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE- 66
           K  ++G +GVGKS L ++F  KRF   ++  +   + +R +TID + + L+I DT GQ+ 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 67  -SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDL 123
                      R A G +LVY IT R +F+ ++  L+  R+       + ++L+GNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASA-KTAQNVEEAFIK 162
            H R VSTEEG++ A E G +F E SA +    V+  F +
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  111 bits (280), Expect = 3e-31
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + ID +   L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G LLVY +T   + N L    E   R   + N+ ++L+GNK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 126 RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 161
            R VS E+G   +++ G + F E SA+   NV+E FI
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI 157

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  112 bits (282), Expect = 5e-31
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 4/165 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQ 65
            K +++GD   GK+ L+ +F  + F   +  TIG++F +R IT+  +  + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT---IMLIGNKCD 122
           +    +   Y  GA    LVYDIT  ++F +L  WL   ++    + T   ++L+GNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           L H R V+ E+  +FA+E+ +  +  SAKT   V   F + AA +
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  110 bits (278), Expect = 1e-30
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           +++GD  VGK+CLL+ +T   F   +  T+   + A  + +D KP++L +WDTAGQE + 
Sbjct: 2   VVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSAD-VEVDGKPVELGLWDTAGQEDYD 60

Query: 70  SITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128
            +    Y      L+ + +    +F N    W  + +     N+ I+L+G K DL + ++
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVGTKLDLRNDKS 119

Query: 129 ------------VSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF---IKTA 164
                       V+ E+G+  AK    + ++E SA T + V E F   I+ A
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  108 bits (271), Expect = 5e-30
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITIDN--KPIKLQIWDTA 63
           +  ++GD  VGKS L+  F      FQ  + +T G +   + + + +    ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCD 122
           GQE F  +  + +   A   +VYD+T   +FN+ + W+   R H++   T  +L+GNKCD
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165
           L  RR V   + +  A+ + L F E SAK     E  F+  A 
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  108 bits (272), Expect = 5e-30
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 2/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS + +QF    F   HD TI   +  +   IDN+P  L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAH 125
            F ++   Y R   G ++ Y +T R +F   + + E   R     ++ ++L+GNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           +R V+TEEG   A+E    F E SA     +++AF      I +K
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  105 bits (263), Expect = 9e-29
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K I++GD+ VGKS L+ +F    ++P    T  +         + K I +  WDTAGQE 
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
           F+++  SYY  A   +LV+D+TR+ T+ +L+ W E+ R++    +  +++ NK DL    
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS- 119

Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
              T++   FA++H L     SA    NV + F
Sbjct: 120 --VTQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  101 bits (255), Expect = 1e-27
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 3/158 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE        +   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D       N+ I+L GNK D+  R
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 119

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           +     +   F ++  L + E SAK+  N E+ F+  A
Sbjct: 120 K--VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  101 bits (254), Expect = 2e-27
 Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 6/158 (3%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++I+       LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 67  SFRSITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT---IMLIGNKCD 122
            F ++ R S  +G A  +LVY IT +++   L    E   +    N+    IML+GNKCD
Sbjct: 61  QFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            +  R VS+ EG   A+     FME SAKT  NV+E F
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDL---TIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           ++G  GVGKS LL          V D+   T   +    +  +D   +KL + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLDE 59

Query: 68  F-----RSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKC 121
           F       + R   RGA   LLV D T RE+  +     L   R+     + I+L+GNK 
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKI 116

Query: 122 DL-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           DL   R        E+ AK  G+   E SAKT + V+E F
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 94.4 bits (235), Expect = 5e-24
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +     +   F ++  L + E SAK+  N E+ F+
Sbjct: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165

Length = 219

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQF-TDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           ++ +++GD+GVGKS L   F         ++   G +   R +++D +   L ++D   Q
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEA-SGDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLAS----WLEDARQHANANMTIMLIGNKC 121
           E    +  S  +     ++VY +T R +F   AS     L  ARQ  +  + I+L+GNK 
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSVTDRSSF-EKASELRIQLRRARQAED--IPIILVGNKS 116

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           DL   R VS +EG   A      F+E SA    NV+E F
Sbjct: 117 DLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 92.8 bits (231), Expect = 2e-23
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M     FK I++GD GVGK+  + +     F+  +  T+GVE        +  PI   +W
Sbjct: 4   MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVW 63

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L+GNK
Sbjct: 64  DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNK 122

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
            D+  R+ V   +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 123 VDVKDRQ-VKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167

Length = 215

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 90.9 bits (226), Expect = 6e-23
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 22/176 (12%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---DNKPIKLQIWDTA 63
            K +++GD G GK+CLL+ +    F   +  T+   F   + T+   + K I+L +WDTA
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCD 122
           GQE +  +    Y      L+ Y +    + +++   W  +   H      I+L+G K D
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKTD 119

Query: 123 L-AHRRA-----------VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAA 165
           L   + +           V+ E+GE  AK  G + ++E SAK  +NV+E F   A 
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF-DAAI 174

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 86.3 bits (214), Expect = 3e-21
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+ L++ +T   +   +  T    F    + +D KP++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           F  +    Y      LL + +    +F +++  W+ + R+H N    I+L+G + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 124 ---------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                       + VS    +  A++ G   ++E SA T +N++E F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 85.9 bits (213), Expect = 3e-21
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 16/168 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAH- 125
           +  +    Y      L+ + I   ++  N    W  + + H   N+ I+L+GNK DL + 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 126 -----------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI 161
                      +  V  EEG   A++ G   ++E SAKT + V E F 
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 85.7 bits (212), Expect = 4e-21
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K + +GD  VGK+C+L+ +T   F   +  T+   F A  + +D   + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGNTVNLGLWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
           +  +    YRGA   LL + +  + ++ N L  W+ + R +A   + I+L+G K DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 127 R----------AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 160
           +           ++T +GE+  K+ G   ++E S+KT QNV+  F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 85.1 bits (210), Expect = 1e-20
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 12  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71
           +GD G GK+  + +     F+  +  T+GVE    +   +  PI+  +WDTAGQE F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 72  TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 131
              YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+  + 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRKVKAK 119

Query: 132 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
                F ++  L + + SAK+  N E+ F+  A
Sbjct: 120 S--ITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 82.3 bits (203), Expect = 2e-19
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+ LL ++ ++RF+     T+G  F  +       P  + IWDTAG+E 
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQ 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-- 125
           F  +   Y RGAA  +L YD++  ++   L          AN +    ++GNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 126 -----------------RRAVSTEEGEQFAKE----HGL----------IFMEASAKTAQ 154
                            +R V+ E+ + F K       L          +  E SAKT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 155 NVEEAF 160
           NV+E F
Sbjct: 177 NVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 81.1 bits (200), Expect = 3e-19
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+ LL  FT   F  V++ T+  E     I +D   ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           F  +    Y      +L + +   ++  ++ S WL + R H    + ++L+  KCDL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG-VKLVLVALKCDLREP 119

Query: 124 -----AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAA 165
                     +S EEG   AK  +   ++E SAK  + V EAF + A 
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 80.6 bits (199), Expect = 4e-19
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCD---- 122
           +  +    Y      L+ + +    +F N  A W  + R H   N  I+L+G K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 123 ------LAHRR--AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                 L  ++   ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K ++IGD G GKS LL Q     F P      G       + +D     L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS---WLEDARQHANANMTIMLIGNKC 121
            +     + + A   LLVYD+T RE+ N ++    WL + R+     + ++L+GNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K  ++GD  +GK+ L++++ +  F   +  T+GV F  + I+I    I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123
           F ++     + A   L ++D+TR+ T N +  W   AR      + I L+G K DL
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 72.2 bits (177), Expect = 6e-16
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+ LL  FT   F   +  T+   +      +D KP++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y  A   L+ + I   ++  N    W+E+ R++   N+ ++L+G K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 124 -------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAT 166
                  A    V  ++ +  A+      +ME SA T + V++ F   AAT
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF--EAAT 169

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           +++G  G GK+ +L +            TIG  F    +   N  +K  +WD  GQ+  R
Sbjct: 3   LMLGLDGAGKTTILYKLKLGEVVTTIP-TIG--FNVETVEYKN--VKFTVWDVGGQDKIR 57

Query: 70  SITRSYYRGAAGALLVYDITRR----ETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
            + + YY    G + V D + R    E  N L   L +          ++++ NK DL  
Sbjct: 58  PLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEE---LKGAPLLILANKQDLPG 114

Query: 126 RRAVSTEEGEQFAKEHGL-----IFMEASAKTAQNVEEAF 160
             A++  E  +      +          SA T   ++E  
Sbjct: 115 --ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 18/176 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    +D + I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCD---- 122
           + ++    Y  +   L+ +DI+R ET  + L  W  + R+    N  ++L+G K D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTD 120

Query: 123 ------LAHRRA--VSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATI 167
                 L+++R   VS E+G   AK+ G   ++E SAKT++N V + F + T A +
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           + + +G  GVGK+ L+ +F    F+P H  T+  E  ++   +    + + I DT+G  S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHR 126
           F ++ +   +      LVY +   E+F  +    E+  +   +  + I+++GNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 127 RAVSTEEGEQFAK---EHGLIFMEASAKTAQNVEEAF 160
           R V   +     +    +G  F+EASAK  +NV E F
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 67.7 bits (165), Expect = 4e-14
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F   +  T+   + A+   +D + + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
           +  +    Y      ++ + I    ++ N    W  +   H   N+ I+L+G K DL + 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 127 RAV------------STEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                          + ++G   AK+ H + ++E SA     V+E F
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 14/125 (11%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-RMITIDNKPIKLQIWDTAGQE 66
           K +++G  GVGK+ L  Q   ++F      T G+     ++   + K I+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 67  SFRSI------TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
            + +       +RS Y      LLV+D+   +  + +  WL   +     +  ++L+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTH 115

Query: 121 CDLAH 125
            D + 
Sbjct: 116 IDESC 120

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 66.4 bits (162), Expect = 8e-14
 Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F N    W+ +   H       +L+G + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 124 ---------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                      ++ ++ E GE+ A++   + ++E SA T + ++  F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           ++ +++G + VGK+ ++ +F   RF+  +  TI  +F  ++ +I  +  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---------HANANMTIMLI 117
            F ++ R         +LV+ +  RE+F  +    E   +           N  + +++ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 118 GNKCDLAHRRAVSTEEGEQF-AKEHGLIFMEASAKTAQNVEEAF 160
           GNK D    R V  +E EQ    +    + E SAK   N++E F
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 62.8 bits (152), Expect = 2e-12
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 65

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA--- 124
           + ++    Y  +   L+ +DI+R ET + +    +   Q    N  ++L+G K DL    
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125

Query: 125 --------HRRA-VSTEEGEQFAKEHGLI-FMEASAKTAQN-VEEAF-IKTAATIYK 169
                   HR+  VS ++G   AK+ G   ++E SA  ++N V + F + T A + K
Sbjct: 126 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 182

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 16/176 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ + +  F   +  T+   + A  +T+  K   L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQE 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ + +++A  N+  +LIG + DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 124 ----------AHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATIY 168
                        + ++ E+G++ AKE G   ++E SA T + ++  F +    I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 32/168 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRF----QPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           ++IGD GVGKS L++    + F      V  ++TI  +      T +  P    I DT+ 
Sbjct: 6   VLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV-----TPERVPTT--IVDTSS 58

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL 123
           +   R+   +  R A    LVY + R  T   + + WL   R+     + I+L+GNK DL
Sbjct: 59  RPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDL 117

Query: 124 AHRRAVSTEEGEQFAKEHGLIF-----------MEASAKTAQNVEEAF 160
                   +   Q   E  ++            +E SAKT  NV E F
Sbjct: 118 -------RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 61.6 bits (149), Expect = 9e-12
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GDT  GK+ LL  F    +   +  T+   + A    ID   I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASF-EIDKHRIELNMWDTSGSSY 61

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD----- 122
           + ++    Y  +   L+ +DI+R ET + +    +   Q    N  ++L+G K D     
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 123 -----LAHRR--AVSTEEGEQFAKEHGLI-FMEASAKTAQN-VEEAF-IKTAATI 167
                L+ +R   V+ E+G   A++ G + ++E S++ ++N V + F + T A++
Sbjct: 122 STLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 21/171 (12%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +I+G    GK+ +L +            TIG  F    +T  N  +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
           S R + R+Y+      + V D   R+        L + L +      A+  ++++ NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEE---LADAPLLILANKQD 126

Query: 123 LAHRRAVSTEEGEQFAKEHGL------IFMEASAKTAQNVEEAFIKTAATI 167
           L    A+S  E  +    H L      I    SA T + ++E     +  I
Sbjct: 127 L--PGAMSEAEIRELLGLHELKDRPWEIQG-CSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 59.3 bits (143), Expect = 6e-11
 Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 16/174 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + + ++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 73

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
           + ++    Y  +   LL +DI+R E F+  L  W  +   +   +  I+LIG K D    
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLRTD 132

Query: 123 ------LAHRRA--VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
                 L++++   +S E+G   AK+ G   ++E SA T++    +  +TA+ +
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLL 186

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIG--VEFGARMITIDNKPIKLQIWD 61
           +K II+G    GK+ +L QF         P    TIG  VE       I  K I+  +WD
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSP----TIGSNVE------EIVYKNIRFLMWD 65

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNK 120
             GQES RS   +YY      +LV D T RE        L     H +    ++L+  NK
Sbjct: 66  IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANK 125

Query: 121 CDLAHRRAVS-TEEGEQFA----KEHGLIFMEASAKTAQNVEEA 159
            DL  + A++  E  E       ++H        A T + + E 
Sbjct: 126 QDL--KGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAGQESF 68
           +++G    GKS LL +   K  + V  + T+G  F   M+ +  K + L +WD  GQE  
Sbjct: 3   LLLGLDSAGKSTLLYKL--KHAELVTTIPTVG--FNVEMLQL-EKHLSLTVWDVGGQEKM 57

Query: 69  RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRR 127
           R++ + Y     G + V D +     +     L+   ++ +   + ++L+ NK DL    
Sbjct: 58  RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG-- 115

Query: 128 AVSTEE------GEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           A++ EE       +++  +        SA T + + EAF K A
Sbjct: 116 ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 21/165 (12%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL--------TIGVEFGARMITIDNKPIKLQIWD 61
           +I+G    GK+  L Q T  +F   +          T+G+  G    TI+    +L  WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIG----TIEVGKARLMFWD 57

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNK 120
             GQE  RS+   YY  + G + V D T RE FN   S  E      A   + ++++ NK
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANK 117

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLI------FMEASAKTAQNVEEA 159
            DL    +V+ E  E F     LI          SA   + VEE 
Sbjct: 118 QDLPDALSVA-EIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           + + +G  G GK+ +L +     F QP+  +   VE      T++ K +K  IWD  G+ 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE------TVEYKNLKFTIWDVGGKH 54

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
             R + + YY      + V D + R+  +   S L            ++LI  NK D+A 
Sbjct: 55  KLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114

Query: 126 RRAVSTEEGEQFAKEHGL 143
             A+S EE  +    H L
Sbjct: 115 --ALSVEEMTELLSLHKL 130

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 28/146 (19%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-----DNKPIKLQIWDT 62
           K +++GD+GVGKS L+      +       T+G     R  T      + K   +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 63  AGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASW-LE--------------- 102
            G     ES +S    +Y    G + V+D+T +++  +L  W LE               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 103 ---DARQHANANMTIMLIGNKCDLAH 125
              D+ Q A   + +++IG K D   
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIP 147

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 20/133 (15%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           K + +G    GK+ LL    D R     P    T      +  +TI N  +K   +D  G
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPT------SEELTIGN--VKFTTFDLGG 72

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANANMTIMLIGNK 120
            E  R + + Y+    G + + D    E F      L S L D      AN+ I+++GNK
Sbjct: 73  HEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLND---EELANVPILILGNK 129

Query: 121 CDLAHRRAVSTEE 133
            D     AVS EE
Sbjct: 130 IDK--PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD--------- 61
           ++G  GVGK+ ++ QF  + F   +  T         + +  +   L I D         
Sbjct: 5   VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIMLIG 118
           TAGQE      R   R +   +LVYDI   ++F++   L   + + R   N    I+++G
Sbjct: 65  TAGQEWMDPRFRG-LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123

Query: 119 NKCDL-----AHRRAVS 130
           NK D      A R  +S
Sbjct: 124 NKRDQQRHRFAPRHVLS 140

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 22/137 (16%)

Query: 49  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 108
           T++ K +K  +WD  GQ+  R + R YY+   G + V D   RE          DAR+  
Sbjct: 55  TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG-------DAREEL 107

Query: 109 NA--------NMTIMLIGNKCDLAHRRAVSTEE-----GEQFAKEHGLIFMEASAKTAQN 155
                     +  +++  NK DL +  A+ST E     G    ++         A TAQ 
Sbjct: 108 ERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQG 165

Query: 156 VEEAFIKTAATIYKKIQ 172
           + E     +A I K +Q
Sbjct: 166 LYEGLDWLSANIKKSMQ 182

Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 40/191 (20%)

Query: 6   LFKYIIIGDTGVGKSCLLL------QFTDKRFQPVHDLTI----------GVEFGARMIT 49
             K +++GD  VGK+ L+         T  +    H  T+           V   +R + 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV- 60

Query: 50  IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA 108
           +D   + L++WDT G        R  Y  +   LL + I    +  ++ + W  + R   
Sbjct: 61  VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC 118

Query: 109 NANMTIMLIGNKCDLAH-------------------RRAVSTEEGEQFAKEHGLIFMEAS 149
              + ++L+G K DL +                      +  E G   AKE G+ + E S
Sbjct: 119 -PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETS 177

Query: 150 AKTAQNVEEAF 160
             T   V++ F
Sbjct: 178 VVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 16/122 (13%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTAG 64
           + +++G    GK+ +L +   K  + V  + TIG  VE      T+  K I   +WD  G
Sbjct: 15  RILMVGLDAAGKTTILYKL--KLGESVTTIPTIGFNVE------TVTYKNISFTVWDVGG 66

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKC 121
           Q+  R + R YY    G + V D   R+  +     L    +  +  +A   I++  NK 
Sbjct: 67  QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDA--VILVFANKQ 124

Query: 122 DL 123
           DL
Sbjct: 125 DL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDN---KPIKLQIWDTAGQ 65
           +++G    GK+ +L +     F  V+ + T G  F    I +     K +    WD  GQ
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF--VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E  R + +SY R   G + V D    E      + L    +   N  + ++++ NK DL 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDL- 121

Query: 125 HRRAVSTEEGEQFAKEHGLI 144
              A+   E E+    H L 
Sbjct: 122 -PNALPVSEVEKLLALHELS 140

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 61/207 (29%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-----KPIK-------- 56
           +++GD+GVGKS L+              TIG   G + IT  +       IK        
Sbjct: 25  LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFF 84

Query: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-- 114
           +++WD +G E ++     +Y    G + V+D+++R T   L  W   A + A A  T   
Sbjct: 85  VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKW---ASEVA-ATGTFSA 140

Query: 115 --------------MLIGNKCDLAHRRAV----------------------STEE---GE 135
                         ++IGNK D+A +                         S+EE    E
Sbjct: 141 PLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTE 200

Query: 136 QFAKEHGLIFMEASAKTAQNVEEAFIK 162
            F    GLI   A+AK A+  +EA IK
Sbjct: 201 SFPGNGGLI---AAAKEARYDKEALIK 224

Length = 334

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++    KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGEDIS-----TISPTLGFNIKTLEYNGYKLNIWDVGGQK 69

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
           S RS  R+Y+      + V D + R         L   L + R    A  T+++  NK D
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERL---AGATLLIFANKQD 126

Query: 123 LAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAF 160
           L    A+S EE  +       K H       SA T +N+ +  
Sbjct: 127 LP--GALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGI 167

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
           ++G    GK+ L+      +F    D    V F  R +T  N  IK  +WD  GQ  FRS
Sbjct: 4   LVGLQNSGKTTLVNVIASGQF--SEDTIPTVGFNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 71  ITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANANMTIMLIGNKCDL 123
           +   Y RG    + V D   RE      N L   LE         + ++++GNK DL
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEG---IPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDK------------RFQPVHDLTIGVEFGARMITIDNKPI 55
           K ++IG  G GK+  +   +DK              +     T+ ++FG+  I +D    
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDED-T 68

Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            + ++ T GQE F+ +     RGA GA+++ D +R  TF
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF 107

Length = 187

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)

Query: 49  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA 108
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 47  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQEL 99

Query: 109 N--------ANMTIMLIGNKCDLA 124
           +         +  +++  NK DL 
Sbjct: 100 HRIINDREMRDALLLVFANKQDLP 123

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 25/106 (23%)

Query: 38  TIG--VEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95
           TIG  VE      T++ K I   +WD  GQ+  R + R Y++   G + V D   RE   
Sbjct: 31  TIGFNVE------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER-- 82

Query: 96  HLASWLEDARQHANA--------NMTIMLIGNKCDLAHRRAVSTEE 133
                + +AR+            +  +++  NK DL    A+S  E
Sbjct: 83  -----IGEAREELQRMLNEDELRDAVLLVFANKQDL--PNAMSAAE 121

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 38 TIG--VEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92
          TIG  VE      T+  K +K Q+WD  GQ S R   R YY      + V D T R+
Sbjct: 30 TIGFNVE------TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           +++G  G GK+ LL   + +R       T G  F +  I    +   +++ +  G ++ R
Sbjct: 3   LVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIP--TQDAIMELLEIGGSQNLR 58

Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH------ANANMTIMLIGNKCDL 123
              + Y  G+ G + V D    E        L  ARQ          ++ ++++ NK DL
Sbjct: 59  KYWKRYLSGSQGLIFVVDSADSER-------LPLARQELHQLLQHPPDLPLVVLANKQDL 111

Query: 124 AHRRAV 129
              R+V
Sbjct: 112 PAARSV 117

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           +++G    GK+ +L Q   +    +   T G  F  + +  D    KL +WD  GQ   R
Sbjct: 19  LLLGLDNAGKTTILKQLASEDISHITP-TQG--FNIKNVQADG--FKLNVWDIGGQRKIR 73

Query: 70  SITRSYYRGAAGALLVYDITRRETFNH----LASWLEDARQHANANMTIMLIGNKCDLAH 125
              R+Y+      + V D   R+ F      L   LE+ +    A + +++  NK DL  
Sbjct: 74  PYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKL---AGVPVLVFANKQDLL- 129

Query: 126 RRAVSTEE 133
             A   EE
Sbjct: 130 -TAAPAEE 136

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 32/165 (19%), Positives = 46/165 (27%), Gaps = 31/165 (18%)

Query: 11  IIGDTGVGKSCLLLQFT-DKRFQ--PVHDLTIGVEFGARMITIDNKPIKLQIWDTAG--- 64
           I G   VGKS LL            P+   T           +   P+ L   DT G   
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPV-RKEWELLPLGPVVLI--DTPGLDE 58

Query: 65  ---QESFRSI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLI 117
                  R    R     A   LLV D              E+  +          ++L+
Sbjct: 59  EGGLGRERVEEARQVADRADLVLLVVDSDLTPV--------EEEAKLGLLRERGKPVLLV 110

Query: 118 GNKCDL----AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158
            NK DL         +   + E       +     SA   + ++E
Sbjct: 111 LNKIDLVPESEEEELLRERKLELLPDLPVIAV---SALPGEGIDE 152

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 49  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 103
           T++ K I   +WD  GQ+  R + R Y++   G + V D   R+        L     ED
Sbjct: 55  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114

Query: 104 ARQHANANMTIMLIGNKCDLAHRRAVS 130
             + A     +++  NK DL +    +
Sbjct: 115 ELRDA----VLLVFANKQDLPNAMNAA 137

Length = 181

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 38.2 bits (90), Expect = 0.002
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 36/149 (24%)

Query: 48  ITIDNKPIKLQIWDTAG---------QESFRSITRSYYRGAAGA---LLVYDITRRETFN 95
           I +D  P++L   DTAG         +     I RS       A   LLV D +   T  
Sbjct: 258 INLDGIPLRLI--DTAGIRETDDEVEKIG---IERSREA-IEEADLVLLVLDASEPLTEE 311

Query: 96  HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155
                 E        +  ++++ NK DL        E   +      +I +  SAKT + 
Sbjct: 312 DDEILEE------LKDKPVIVVLNKADLT------GEIDLEEENGKPVIRI--SAKTGEG 357

Query: 156 VE---EAFIKTAATIYKKIQDGVFDVSNE 181
           ++   EA  + A   +   Q+GVF ++N 
Sbjct: 358 IDELREAIKELAFGGFGGNQEGVF-LTNA 385

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
PTZ00099	176	rab6; Provisional	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK15494	339	era GTPase Era; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK11058	426	GTPase HflX; Provisional	99.88
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK00089	292	era GTPase Era; Reviewed	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
PRK04004	586	translation initiation factor IF-2; Validated	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.79
COG0486	454	ThdF Predicted GTPase [General function prediction	99.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.79
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
COG0218	200	Predicted GTPase [General function prediction only	99.79
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
COG2262	411	HflX GTPases [General function prediction only]	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.76
PRK12736	394	elongation factor Tu; Reviewed	99.76
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.76
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.75
COG0536	369	Obg Predicted GTPase [General function prediction	99.74
PRK12735	396	elongation factor Tu; Reviewed	99.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
CHL00071	409	tufA elongation factor Tu	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
KOG1145	683	consensus Mitochondrial translation initiation fac	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.69
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.69
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
PRK00049	396	elongation factor Tu; Reviewed	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.66
COG1163	365	DRG Predicted GTPase [General function prediction	99.66
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.65
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.64
COG3596	296	Predicted GTPase [General function prediction only	99.63
PRK12739	691	elongation factor G; Reviewed	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.61
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.59
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.59
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.58
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.58
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.56
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.56
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.55
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.54
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.54
PRK09866	741	hypothetical protein; Provisional	99.53
PRK00007	693	elongation factor G; Reviewed	99.53
PRK12740	668	elongation factor G; Reviewed	99.53
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.5
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.5
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.49
PRK14845	1049	translation initiation factor IF-2; Provisional	99.49
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.48
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.48
PTZ00258	390	GTP-binding protein; Provisional	99.46
KOG0090	238	consensus Signal recognition particle receptor, be	99.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.43
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.42
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.41
PRK13768	253	GTPase; Provisional	99.39
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.39
PRK09601	364	GTP-binding protein YchF; Reviewed	99.38
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.37
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.37
PTZ00416	836	elongation factor 2; Provisional	99.35
PRK07560	731	elongation factor EF-2; Reviewed	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.33
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.32
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.32
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.31
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.31
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.3
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.29
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.28
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.28
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.27
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.26
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.26
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.24
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.23
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.21
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.2
KOG0410	410	consensus Predicted GTP binding protein [General f	99.2
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.19
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.18
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.18
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.17
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.16
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.15
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.14
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.13
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.11
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.09
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.09
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.07
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.05
PRK12289	352	GTPase RsgA; Reviewed	99.04
KOG2486	320	consensus Predicted GTPase [General function predi	98.99
PRK12288	347	GTPase RsgA; Reviewed	98.99
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.98
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.97
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.95
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.95
PRK00098	298	GTPase RsgA; Reviewed	98.91
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.91
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.9
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.86
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.84
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.82
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.82
KOG0460	449	consensus Mitochondrial translation elongation fac	98.78
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.76
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.75
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.75
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.75
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.73
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.72
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.71
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.71
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.71
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.7
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.68
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.65
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.65
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.64
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.64
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.63
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.62
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.61
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
COG1161	322	Predicted GTPases [General function prediction onl	98.6
KOG1143	591	consensus Predicted translation elongation factor	98.59
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.54
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.54
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.51
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.51
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.46
cd03112	158	CobW_like The function of this protein family is u	98.39
PRK12288	347	GTPase RsgA; Reviewed	98.39
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.39
PRK13796	365	GTPase YqeH; Provisional	98.33
PRK12289	352	GTPase RsgA; Reviewed	98.32
PRK01889	356	GTPase RsgA; Reviewed	98.31
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.31
COG3523	1188	IcmF Type VI protein secretion system component Va	98.29
PRK10416	318	signal recognition particle-docking protein FtsY;	98.25
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.25
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.25
PRK13796	365	GTPase YqeH; Provisional	98.21
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.21
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.2
COG1162	301	Predicted GTPases [General function prediction onl	98.2
PRK14974	336	cell division protein FtsY; Provisional	98.19
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.18
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.15
COG1162	301	Predicted GTPases [General function prediction onl	98.14
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.13
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.12
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.08
PRK00098	298	GTPase RsgA; Reviewed	98.07
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.04
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.01
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.0
cd03114	148	ArgK-like The function of this protein family is u	97.94
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.93
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.92
COG0523	323	Putative GTPases (G3E family) [General function pr	97.87
PRK13695	174	putative NTPase; Provisional	97.85
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.85
KOG2484	435	consensus GTPase [General function prediction only	97.83
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.83
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.77
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.75
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.73
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.73
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.72
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.68
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.68
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.68
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.63
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.61
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.58
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.58
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.54
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.54
PRK10867	433	signal recognition particle protein; Provisional	97.53
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.5
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.5
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.46
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.45
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.45
cd03111	106	CpaE_like This protein family consists of proteins	97.44
TIGR00959	428	ffh signal recognition particle protein. This mode	97.44
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.4
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.38
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.36
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.35
PRK08118	167	topology modulation protein; Reviewed	97.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.34
cd03110	179	Fer4_NifH_child This protein family's function is	97.34
PRK07261	171	topology modulation protein; Provisional	97.34
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.34
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.33
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.33
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.31
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.3
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.29
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.29
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.29
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.25
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.25
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.25
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.23
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.22
cd02036	179	MinD Bacterial cell division requires the formatio	97.21
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.2
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.19
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.18
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.16
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.16
PRK14737	186	gmk guanylate kinase; Provisional	97.16
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.12
COG0802	149	Predicted ATPase or kinase [General function predi	97.11
PRK14738	206	gmk guanylate kinase; Provisional	97.1
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.09
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.09
PRK06217	183	hypothetical protein; Validated	97.08
PRK10646	153	ADP-binding protein; Provisional	97.07
PTZ00088	229	adenylate kinase 1; Provisional	97.07
PRK01889	356	GTPase RsgA; Reviewed	97.06
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.06
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.06
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.06
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.04
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.04
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.04
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.02
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.02
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.02
PRK03839	180	putative kinase; Provisional	97.0
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.0
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.99
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.98
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.96
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.96
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	96.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.95
PRK05480	209	uridine/cytidine kinase; Provisional	96.95
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.94
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.94
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.94
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.94
PF00004	132	AAA: ATPase family associated with various cellula	96.93
smart00382	148	AAA ATPases associated with a variety of cellular	96.93
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.93
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.92
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.92
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	96.92
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.92
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.91
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.91
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.91

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-45  Score=259.71  Aligned_cols=199  Identities=48%  Similarity=0.835  Sum_probs=183.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.+||+|+|..|+|||+|+.||....+.+.+..|+|+++..+.+.++++.++++||||+|+++|+.+...||+++|++
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~  161 (211)
                      |+|||+++.++|..+..|+.++.++...++|.++|+||+|+.+.+.+..++++.|+.+++.+ ++++||+++.||+++|.
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~  165 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL  165 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237          162 KTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS  211 (211)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      .|...+.++..........+..++.+.+          ++.++..++||+
T Consensus       166 ~la~~lk~~~~~~~~~~~~~~~~~ql~~----------~p~~~~~~~~C~  205 (205)
T KOG0084|consen  166 TLAKELKQRKGLHVKWSTASLESVQLKG----------TPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHHhcccCCCCCcCCCCceeeCC----------CCcccccCCCCC
Confidence            9999999998887766655555555543          234455556886

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-43  Score=245.40  Aligned_cols=188  Identities=86%  Similarity=1.299  Sum_probs=181.6

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.+.+.+|++++|..|+|||+|+.+|+..+|.+.+..|.|+++..+.++++++.++++||||.|++.|.++...||+.+-
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ++|+|||+++.++|..+..|+..++++..++.-+++++||+|+..++++..++++.|++++++.+.++||+++.||+|.|
T Consensus        81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF  160 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF  160 (216)
T ss_pred             ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccCCCCCcc-eeec
Q 028237          161 IKTAATIYKKIQDGVFDVSNESYG-IKVG  188 (211)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~  188 (211)
                      ......+.+....+..+...++.+ ++.+
T Consensus       161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~  189 (216)
T KOG0098|consen  161 INTAKEIYRKIQDGVFDDINESKGKIKIG  189 (216)
T ss_pred             HHHHHHHHHHHHhcccccccccccceeec
Confidence            999999999999998888877777 6654

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=246.75  Aligned_cols=210  Identities=98%  Similarity=1.466  Sum_probs=195.3

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.+++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            88999999999999999999999999999998888888888888888889988899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ++|+|||++++.+++.+..|+..+......+.|+++++||+|+.+.+.+..++.+++++.++++++++||+++.|++++|
T Consensus        81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f  160 (210)
T PLN03108         81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (210)
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999888876666689999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCC
Q 028237          161 IKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC  210 (211)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  210 (211)
                      .++++.+.+...+.......++.++..+..+.|+.+.++.++...-+|||
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (210)
T PLN03108        161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC  210 (210)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence            99999999988888888888889999999999999999999999999998

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-41  Score=238.02  Aligned_cols=197  Identities=40%  Similarity=0.736  Sum_probs=174.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|..++|||||+.||..+.|.+...+|+|..+..+.+.+.+..+++.||||+|+++|.++...||++++++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |||+++.++|..+..|..++.+...+++-+.+++||+|+.+.+++..+++..+++..++.++|+||++|.|++++|..|.
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia  163 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA  163 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence            99999999999999999999998888888899999999999899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237          165 ATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS  211 (211)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      +++..............+.+..+.       +   ...+..+++|||
T Consensus       164 ~~lp~~~~~~~~~~~~~~~g~~l~-------~---~~~~~~~~~~C~  200 (200)
T KOG0092|consen  164 EKLPCSDPQERQGLPNRRQGVDLN-------S---NQEPARPSGCCA  200 (200)
T ss_pred             HhccCccccccccccccccceecc-------c---CCCCcCcCCcCC
Confidence            998877665443222222222221       1   116777889997

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.5e-40  Score=234.13  Aligned_cols=174  Identities=52%  Similarity=0.939  Sum_probs=168.9

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.+||+++|.++||||+|+.+|..+.|...+..|.|+++..+.+.+++..+.+++|||+|+++|..+...||+.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +++|||+++..+++++..|+..+..+....+|.++|+||+|+.+.+++..+.+++++.++|+.++|+||++|.||++.|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCc
Q 028237          162 KTAATIYKKIQDGV  175 (211)
Q Consensus       162 ~l~~~~~~~~~~~~  175 (211)
                      .|++.+..+..+..
T Consensus       168 ~La~~i~~k~~~~~  181 (207)
T KOG0078|consen  168 SLARDILQKLEDAE  181 (207)
T ss_pred             HHHHHHHhhcchhh
Confidence            99999999777653

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-40  Score=231.24  Aligned_cols=167  Identities=40%  Similarity=0.720  Sum_probs=158.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|..++||||||++|....|+..|.+|+|+++...++.+++.++++++|||+|+++|+.+...|+++++++|+|
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV  101 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV  101 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||+++..+++.+.+|++.+...... +.-+++|+||.||.+.+++..++.++.++++++.|+++||+.|.||.++|..|.
T Consensus       102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa  181 (221)
T KOG0094|consen  102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA  181 (221)
T ss_pred             EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence            9999999999999999999887765 588899999999999999999999999999999999999999999999999977


Q ss_pred             HHHHHHHh
Q 028237          165 ATIYKKIQ  172 (211)
Q Consensus       165 ~~~~~~~~  172 (211)
                      ..+.+...
T Consensus       182 a~l~~~~~  189 (221)
T KOG0094|consen  182 AALPGMEV  189 (221)
T ss_pred             HhccCccc
Confidence            77766644

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-39  Score=232.82  Aligned_cols=180  Identities=54%  Similarity=0.916  Sum_probs=173.1

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+|+.+||+++|.+++|||-|+.+|..+.|......|+|.++..+.+.++++.++.+||||+|+++|+.+...||+.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +++|||++...+++++..|+.+++.+.+.++++++|+||+|+.+.+.+..+++..+++..+..++++||.+..|++++|.
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccCCCC
Q 028237          162 KTAATIYKKIQDGVFDVSNE  181 (211)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~  181 (211)
                      .++..|+....+........
T Consensus       170 ~~l~~I~~~vs~k~~~~~~~  189 (222)
T KOG0087|consen  170 RVLTEIYKIVSKKQLDENND  189 (222)
T ss_pred             HHHHHHHHHHHHHhhhcccc
Confidence            99999999988876665544

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1e-38  Score=217.86  Aligned_cols=168  Identities=46%  Similarity=0.817  Sum_probs=161.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+++|..|+|||+|+.+|..+.|+.....++|.++..+.+.++++.+++-||||+|+++|+.+...||+.+.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      |+|||++.++++..+..|++++..+.. +++-.++|+||+|..+++.++.++..+|++++++.++++||++.+||...|+
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            999999999999999999999988886 6788899999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          162 KTAATIYKK  170 (211)
Q Consensus       162 ~l~~~~~~~  170 (211)
                      .|+++|++-
T Consensus       168 elveKIi~t  176 (209)
T KOG0080|consen  168 ELVEKIIET  176 (209)
T ss_pred             HHHHHHhcC
Confidence            999999875

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.6e-37  Score=233.08  Aligned_cols=207  Identities=47%  Similarity=0.806  Sum_probs=171.5

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            35789999999999999999999999999888889989999888899999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+..+...+.|+++++||+|+.+.+....++...++...+++++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999777777788888999989999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237          163 TAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS  211 (211)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      |++.+.+............+...  +..+...+....+..+++++|||+
T Consensus       169 l~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c~  215 (216)
T PLN03110        169 ILLEIYHIISKKALAAQEAAANS--GLPGQGTTINVADTSGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHhhccccccccCcccc--cCcCcCCcccccCccCCCCCCCcC
Confidence            99999887654332222111111  111111111112335778889996

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.8e-37  Score=229.72  Aligned_cols=166  Identities=45%  Similarity=0.784  Sum_probs=152.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +.|+++|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..|++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999999888899899998888999999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+.+.++++. ++.++++||++|.||+++|.+|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887765568999999999999777778888889999875 789999999999999999999999


Q ss_pred             HHHHHHh
Q 028237          166 TIYKKIQ  172 (211)
Q Consensus       166 ~~~~~~~  172 (211)
                      .+.+...
T Consensus       161 ~~~~~~~  167 (202)
T cd04120         161 DILKKMP  167 (202)
T ss_pred             HHHHhCc
Confidence            8877543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-38  Score=215.38  Aligned_cols=190  Identities=55%  Similarity=0.919  Sum_probs=183.2

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +||+.+|++|+|+.|+|||+|+++|..+.|......++|+++..+.+.+.++.++++||||+|+++|++..+.||+.+-+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      .++|||+++.++++.+..|+...+-...+++-+++++||.|+.+.+++...+..+|+++..+.+.++|+.+|+||+|.|-
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            99999999999999999999999888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccCCCCCcceeeccCC
Q 028237          162 KTAATIYKKIQDGVFDVSNESYGIKVGYGG  191 (211)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (211)
                      ...+.|..+..-++.+..+..+++.-|...
T Consensus       165 ~c~~tIl~kIE~GElDPer~gsGIQYGdas  194 (214)
T KOG0086|consen  165 KCARTILNKIESGELDPERMGSGIQYGDAS  194 (214)
T ss_pred             HHHHHHHHHHhhcCCCHHHcccccccchhh
Confidence            999999999999999999999999887654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.3e-37  Score=225.70  Aligned_cols=170  Identities=35%  Similarity=0.703  Sum_probs=156.7

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++++.+||+|+|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            36778999999999999999999999998888887888888888888889989999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+.++..+. .+.|++||+||.|+.+.+.+..++++.+++..+++++++||++|.||+++|.
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999997765 5899999999999987777889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      +|++.+..+..
T Consensus       161 ~l~~~i~~~~~  171 (189)
T cd04121         161 ELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHhcC
Confidence            99998876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.5e-36  Score=225.85  Aligned_cols=167  Identities=40%  Similarity=0.699  Sum_probs=150.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988889998888888888887 7889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhc----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~~  160 (211)
                      ||++++++++.+..|+..+....    ..+.|++||+||+|+.+......+++..+++..+ .+++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988876532    2578999999999997656678889999999998 689999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 028237          161 IKTAATIYKKIQD  173 (211)
Q Consensus       161 ~~l~~~~~~~~~~  173 (211)
                      .+|++.+.+....
T Consensus       161 ~~l~~~l~~~~~~  173 (201)
T cd04107         161 RFLVKNILANDKN  173 (201)
T ss_pred             HHHHHHHHHhchh
Confidence            9999999876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=211.71  Aligned_cols=205  Identities=45%  Similarity=0.768  Sum_probs=181.5

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .++.++++|+|.+-+|||+|++.|+.++++.-..||+|.++..+.+.++ +..+++++|||+|+++|+++.+.||+++=+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            4678999999999999999999999999999999999999999988774 778999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcC-C-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHAN-A-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      +++|||+++.++++++..|+.+...+.. + +.-+.+|++|+|+..+++++.+++++++..++..++|+|+++|.||++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999988876665 3 4456788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccCCCCCcceeeccCC-CCCCCCCCCCCCCCCCCCCC
Q 028237          160 FIKTAATIYKKIQDGVFDVSNESYGIKVGYGG-IPGPSGGRDGSSSQAGGCCS  211 (211)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~cc~  211 (211)
                      |..|.+.+...+.++..+....-.+++++... .|  .+.....|+|.  |||
T Consensus       165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~--~s~~~~~P~k~--c~C  213 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIP--RSPSRKQPSKP--CQC  213 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeeccccccccCCCcCC--CcccccCCCCC--CCC
Confidence            99999999999999999998888888875442 22  22233344444  877

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=5.5e-36  Score=222.34  Aligned_cols=173  Identities=45%  Similarity=0.765  Sum_probs=156.0

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +++..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++++++
T Consensus         2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~   81 (199)
T cd04110           2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG   81 (199)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence            35678999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++++++.+..|+..+.... ...|++||+||+|+.+.......+...++...+++++++||++|.|+.++|+
T Consensus        82 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          82 VIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            999999999999999999998886654 4789999999999987666777888889988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCc
Q 028237          162 KTAATIYKKIQDGV  175 (211)
Q Consensus       162 ~l~~~~~~~~~~~~  175 (211)
                      +|.+.+.....+..
T Consensus       161 ~l~~~~~~~~~~~~  174 (199)
T cd04110         161 CITELVLRAKKDNL  174 (199)
T ss_pred             HHHHHHHHhhhccC
Confidence            99999987755543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=5.4e-36  Score=220.91  Aligned_cols=166  Identities=39%  Similarity=0.643  Sum_probs=146.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988887777766554 4456678888899999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ++++.+++.+..|+..+.....   .+.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888866542   5789999999999976666777788888888899999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 028237          165 ATIYKKIQDG  174 (211)
Q Consensus       165 ~~~~~~~~~~  174 (211)
                      +.+.+...++
T Consensus       160 ~~l~~~~~~~  169 (190)
T cd04144         160 RALRQQRQGG  169 (190)
T ss_pred             HHHHHhhccc
Confidence            9988777764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.2e-36  Score=223.87  Aligned_cols=187  Identities=30%  Similarity=0.524  Sum_probs=153.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|..+.+.. +.++.+..+....+    ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46666666544333    4688999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-------------------RRAVSTEEGEQFAKEHG-----  142 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  142 (211)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+                   .+.+..+++..++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988877765556799999999999965                   56778899999999876     


Q ss_pred             ---------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCC
Q 028237          143 ---------LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC  210 (211)
Q Consensus       143 ---------~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  210 (211)
                               ++|+++||++|.||+++|..+++.+.+.......+....       +.+.-     .+..|++|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT-------QGTVN-----LPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-------hcccc-----CCCcccCCCCCC
Confidence                     679999999999999999999999887665543322221       11122     445677888998

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.2e-35  Score=220.78  Aligned_cols=184  Identities=51%  Similarity=0.866  Sum_probs=161.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            3589999999999999999999999998888888888888777777 466789999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      +|||++++++++.+..|+..+..... ...|++||+||.|+.+...+..++...+++.++++++++||++|.|++++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998876654 45788999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccCCCCCcceeec
Q 028237          163 TAATIYKKIQDGVFDVSNESYGIKVG  188 (211)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~  188 (211)
                      |++.+.+....+.......--+++.+
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (211)
T cd04111         161 LTQEIYERIKRGELCALDGWDGVKSG  186 (211)
T ss_pred             HHHHHHHHhhcCCCCccccccccccC
Confidence            99999999887765555554444444

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.8e-37  Score=207.38  Aligned_cols=169  Identities=46%  Similarity=0.788  Sum_probs=162.0

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++.+|+|.+|+|||+|+.+|....|...|..++|.++..+++.+++..+++.|||++|++.|..+...||+..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ++|||+++.++|.+...|+++++...+ ..|-++|+||.|.++++.+..++.+.|+...++.+|++||++.+|++..|.-
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            999999999999999999999988776 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028237          163 TAATIYKKIQ  172 (211)
Q Consensus       163 l~~~~~~~~~  172 (211)
                      |.+++.+...
T Consensus       164 it~qvl~~k~  173 (198)
T KOG0079|consen  164 ITKQVLQAKL  173 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999888763

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-37  Score=206.05  Aligned_cols=173  Identities=45%  Similarity=0.812  Sum_probs=164.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |+..+||+++|..|+|||+|+++|+.+-|++....++|.++-.+++.+++..++++||||+|+++|+++...||+.++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++-..+++.+.+|+.++..+...++--|+|+||+|+.+++++...-.++|.+.....++++||++-.|++.+|..
T Consensus        84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence            99999999999999999999999999888889999999999998899899999999998888999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 028237          163 TAATIYKKIQDGV  175 (211)
Q Consensus       163 l~~~~~~~~~~~~  175 (211)
                      +...+........
T Consensus       164 ~a~rli~~ar~~d  176 (213)
T KOG0095|consen  164 LACRLISEARQND  176 (213)
T ss_pred             HHHHHHHHHHhcc
Confidence            9988887766543

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=7.9e-35  Score=219.11  Aligned_cols=168  Identities=24%  Similarity=0.453  Sum_probs=149.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|..|+|||+|+++|..+.|...+.++++..+. ..+.+++..+.+.||||+|++.|..++..|++++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            35789999999999999999999999999999999877764 45788899999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+            ...+..++++++++..++ .|+++|
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999999984 78999887665 4789999999999854            256788999999999999 599999


Q ss_pred             cCCCC-CHHHHHHHHHHHHHHHHhc
Q 028237          150 AKTAQ-NVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       150 a~~g~-~v~~~~~~l~~~~~~~~~~  173 (211)
                      |++|. ||+++|..++..+.+....
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHhccc
Confidence            99997 8999999999998876444

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.5e-36  Score=209.98  Aligned_cols=170  Identities=37%  Similarity=0.683  Sum_probs=158.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      -..+||+++|.+|+|||||+++|....|...+..++|.++..+.+.+++..+.++||||+|+++|.++.-.+|+.+|..+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCC--CCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNV  156 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v  156 (211)
                      +|||++++.+++.+..|..++..+..    ..-|+||++||+|+.+.  ++++...++.|++..+ +||||+||++..||
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            99999999999999999999987776    46799999999999663  6788999999998875 89999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 028237          157 EEAFIKTAATIYKKIQD  173 (211)
Q Consensus       157 ~~~~~~l~~~~~~~~~~  173 (211)
                      .++|..+.+........
T Consensus       167 ~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  167 DEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            99999999988887654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3.9e-35  Score=220.21  Aligned_cols=164  Identities=32%  Similarity=0.560  Sum_probs=149.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999898888888864 578999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ||++++++++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998877643   35689999999999776777888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          163 TAATIYKK  170 (211)
Q Consensus       163 l~~~~~~~  170 (211)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998765

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=4.4e-35  Score=211.63  Aligned_cols=164  Identities=66%  Similarity=1.079  Sum_probs=151.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+++.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999888888888888888888899899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..++++.+++..+++++++||++|.|+.++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766668999999999999877777888999999999999999999999999999999998


Q ss_pred             HHHH
Q 028237          166 TIYK  169 (211)
Q Consensus       166 ~~~~  169 (211)
                      ++.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=8.6e-35  Score=214.21  Aligned_cols=167  Identities=46%  Similarity=0.777  Sum_probs=152.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++++++.+..|+..+........|+++++||.|+.+...+..++...+++..+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766678999999999998766677888888998889999999999999999999999999


Q ss_pred             HHHHHhc
Q 028237          167 IYKKIQD  173 (211)
Q Consensus       167 ~~~~~~~  173 (211)
                      +..+...
T Consensus       161 ~~~~~~~  167 (188)
T cd04125         161 IIKRLEE  167 (188)
T ss_pred             HHHHhhc
Confidence            9876543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=5.4e-35  Score=215.74  Aligned_cols=165  Identities=47%  Similarity=0.839  Sum_probs=148.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|.+|||||||+++|....+.. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988764 5666777777777788888899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||++++++++.+..|+..+......+.|+++++||+|+.+.+....++...++...+++++++||++|.|++++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998888776568999999999999766667778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028237          166 TIYKKI  171 (211)
Q Consensus       166 ~~~~~~  171 (211)
                      .+.+..
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-36  Score=200.81  Aligned_cols=171  Identities=41%  Similarity=0.798  Sum_probs=163.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .++.+|++|+|...+|||||+.++.+..|......++|+++..+++.-..+.+++++|||.|++.+..+...|++.++++
T Consensus        18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            67889999999999999999999999999999999999999999887777889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |++||+++.+++..++.|...+.-+.+.+.|+|+++||+|+.+++.+..+.++.++++.|..+||+||+.+.||..+|+.
T Consensus        98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen   98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER  177 (193)
T ss_pred             EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028237          163 TAATIYKKIQD  173 (211)
Q Consensus       163 l~~~~~~~~~~  173 (211)
                      +...|-..+.+
T Consensus       178 lv~~Ic~kmse  188 (193)
T KOG0093|consen  178 LVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHhhh
Confidence            99999887664

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1e-34  Score=209.93  Aligned_cols=166  Identities=54%  Similarity=0.959  Sum_probs=153.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      |+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++++|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999999999998999888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++++++++.+..|+..+......+.|+++++||+|+.+......++...++...+++++++||++|.|++++|.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766689999999999998766677888888999999999999999999999999999


Q ss_pred             HHHHHH
Q 028237          164 AATIYK  169 (211)
Q Consensus       164 ~~~~~~  169 (211)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.2e-34  Score=210.50  Aligned_cols=168  Identities=40%  Similarity=0.764  Sum_probs=151.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC----------CEEEEEEEEeCCCcchhhhhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID----------NKPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~   72 (211)
                      +++.+||+++|.+|||||||+++|....+...+.++.+.++....+.+.          +..+.+.+||++|++.+..++
T Consensus         1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   80 (180)
T cd04127           1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT   80 (180)
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence            3678999999999999999999999999998888888888877666654          456899999999999999999


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (211)
                      ..+++++|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||+
T Consensus        81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            9999999999999999999999999999998876643 578999999999998777778888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~~~~  170 (211)
                      +|.|++++|++|++.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.2e-34  Score=209.04  Aligned_cols=168  Identities=33%  Similarity=0.547  Sum_probs=149.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999888888876555 45577888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.||+++|.+|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999998888766543 5799999999999977777888889999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 028237          165 ATIYKKIQDG  174 (211)
Q Consensus       165 ~~~~~~~~~~  174 (211)
                      +.+.+....+
T Consensus       161 ~~~~~~~~~~  170 (172)
T cd04141         161 REIRRKESMP  170 (172)
T ss_pred             HHHHHhccCC
Confidence            9888765543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=212.04  Aligned_cols=168  Identities=39%  Similarity=0.629  Sum_probs=149.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|.+|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988888888876665 5667788888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++++++.+..|+..+..... .+.|+++++||+|+.+...+...+...+++..+++++++||++|.|+.++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999988876543 588999999999997666667777888888888999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028237          164 AATIYKKIQD  173 (211)
Q Consensus       164 ~~~~~~~~~~  173 (211)
                      ++.+.+..++
T Consensus       163 ~~~l~~~~~~  172 (189)
T PTZ00369        163 VREIRKYLKE  172 (189)
T ss_pred             HHHHHHHhhc
Confidence            9998876554

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=5.1e-34  Score=213.70  Aligned_cols=165  Identities=24%  Similarity=0.484  Sum_probs=143.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|..+.++..+.++++..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999999999877664 56778899999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           87 DITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        87 d~~~~~~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      |++++++++.+.. |...+.. ...+.|+++|+||+|+.+.            ..+..++++.++++.++ +|+|+||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            9999999999864 6555544 3468999999999999542            12567889999999996 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHHhc
Q 028237          153 AQN-VEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       153 g~~-v~~~~~~l~~~~~~~~~~  173 (211)
                      +.+ |.++|...+.....+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            985 999999999987765543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=7.1e-34  Score=205.69  Aligned_cols=167  Identities=90%  Similarity=1.355  Sum_probs=153.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |++.+||+|+|.+|+|||||+++|....+...+.++.+.++....+.+++....+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            57889999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ++|||++++.+++.+..|+..+..+...+.|+++++||.|+.+...+..++...++...+++++++||+++.|++++|.+
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999766667788888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          163 TAATIYK  169 (211)
Q Consensus       163 l~~~~~~  169 (211)
                      +++.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.2e-34  Score=209.47  Aligned_cols=162  Identities=27%  Similarity=0.510  Sum_probs=145.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|..|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4678999999999999999999999999998999887665 456788999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+++.+ ..|+..+..+. ++.|++||+||+|+.+            ...+..++++++++..++ +|+++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78999887765 4799999999999854            235788999999999996 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHH
Q 028237          150 AKTAQN-VEEAFIKTAATI  167 (211)
Q Consensus       150 a~~g~~-v~~~~~~l~~~~  167 (211)
                      |++|.| |+++|..+++..
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-34  Score=192.65  Aligned_cols=209  Identities=57%  Similarity=0.936  Sum_probs=184.3

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|-+++|.+|+|.-|+|||+|+++|+...|-.....+++..+..+.+.+.+...+++|||++|+++|+...+.|++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      .++|||++...++..+..|+...+....++.-+++++||.|+..++.+..++...|+++.++-+++.||++|.|+++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999988877778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCCCCCCCCCCCCCCC
Q 028237          162 KTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS  211 (211)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  211 (211)
                      ....++.+...+++.+.+.-.+++.--+..+.+..- ......+|-+|-|
T Consensus       167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c~c  215 (215)
T KOG0097|consen  167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccCCC
Confidence            999999999999999888766666332221111111 3334445557844

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.4e-34  Score=208.93  Aligned_cols=159  Identities=31%  Similarity=0.629  Sum_probs=143.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||+|+.+|..+.+...+.+|.+..+ ...+.+++..+++.||||+|+++|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999988999987666 455778888999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCC----------CCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237           87 DITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRR----------AVSTEEGEQFAKEHGL-IFMEASAKTAQ  154 (211)
Q Consensus        87 d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~g~  154 (211)
                      |++++.+++.+ ..|+..+.... .+.|++||+||+|+.+..          .+..+++..+++..++ +++|+||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999887665 479999999999996542          4778899999999998 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATI  167 (211)
Q Consensus       155 ~v~~~~~~l~~~~  167 (211)
                      ||+++|..+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=6.1e-34  Score=205.60  Aligned_cols=164  Identities=54%  Similarity=0.927  Sum_probs=150.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||+++++++..+..|+..+......+.|+++++||.|+.+...+..++...+++..+++++++||++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999987776567999999999999776677788889999999999999999999999999999998


Q ss_pred             HHHH
Q 028237          166 TIYK  169 (211)
Q Consensus       166 ~~~~  169 (211)
                      .+..
T Consensus       162 ~~~~  165 (166)
T cd01869         162 EIKK  165 (166)
T ss_pred             HHHh
Confidence            8753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=5.6e-34  Score=204.85  Aligned_cols=160  Identities=44%  Similarity=0.829  Sum_probs=148.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      ++|+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++.+++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877665679999999999998777778889999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.1e-33  Score=204.13  Aligned_cols=162  Identities=43%  Similarity=0.791  Sum_probs=147.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++++++.+..|+..+........|+++++||+|+.+.+....++..++++..+++++++||++|.|+.++|++|.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665678999999999997766677788888888889999999999999999999999887


Q ss_pred             HH
Q 028237          167 IY  168 (211)
Q Consensus       167 ~~  168 (211)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.2e-33  Score=203.99  Aligned_cols=162  Identities=34%  Similarity=0.702  Sum_probs=149.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998877653     4799999999999976556778888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 028237          162 KTAATIY  168 (211)
Q Consensus       162 ~l~~~~~  168 (211)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.8e-35  Score=199.96  Aligned_cols=171  Identities=34%  Similarity=0.680  Sum_probs=161.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      -+.+||+++|..-+|||||+-++..++|......+.-..+..+.+.+++....+.||||+|+++|..+..-||+.+++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            45799999999999999999999999999888888777888888999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++|.++|+.+..|..+++......+-+++|+||+|+.+++.+..++.+.+++..|+.|+++||+++.||.++|..|
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 028237          164 AATIYKKIQDG  174 (211)
Q Consensus       164 ~~~~~~~~~~~  174 (211)
                      ..++++....-
T Consensus       171 t~~MiE~~s~~  181 (218)
T KOG0088|consen  171 TAKMIEHSSQR  181 (218)
T ss_pred             HHHHHHHhhhc
Confidence            99998886543

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=3.4e-33  Score=206.48  Aligned_cols=165  Identities=33%  Similarity=0.599  Sum_probs=145.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|.+|+|||||+++|..+.+.. .+.++.+.++....+.+++..+.+.+||++|.+++..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998875 5777778888777888999899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.    ..+...++..++...+++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998886653 47999999999998532    23455677888888899999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      +|.+.+.+...
T Consensus       160 ~i~~~~~~~~~  170 (193)
T cd04118         160 KVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHhcc
Confidence            99999976654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.5e-33  Score=207.97  Aligned_cols=162  Identities=25%  Similarity=0.539  Sum_probs=142.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|..|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            38999999999999999999999999888999987655 34567888899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEecC
Q 028237           86 YDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHG-LIFMEASAK  151 (211)
Q Consensus        86 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~  151 (211)
                      ||++++.+++.+. .|+..+.... .+.|++||+||.|+.+..            .+..++++.+++..+ ++++++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 5877776554 479999999999996532            356678889999988 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~~~  169 (211)
                      +|.||+++|.++++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.1e-33  Score=202.57  Aligned_cols=164  Identities=57%  Similarity=0.931  Sum_probs=150.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ++.+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            35689999999999999999999999988888899888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++++.++..+..|+..+......+.|+++++||.|+.+.+....++...++...+++++++||++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999888776679999999999997766777888889998889999999999999999999999


Q ss_pred             HHHH
Q 028237          164 AATI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      ++.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.6e-33  Score=202.52  Aligned_cols=161  Identities=39%  Similarity=0.730  Sum_probs=153.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+|+|+.++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ++++++++.+..|+..+......+.|++|++||.|+.+.+.+..++++.+++.++++++++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999888876799999999999988788999999999999999999999999999999999999987


Q ss_pred             H
Q 028237          168 Y  168 (211)
Q Consensus       168 ~  168 (211)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.3e-33  Score=205.86  Aligned_cols=161  Identities=28%  Similarity=0.518  Sum_probs=143.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999988888877665 45678889999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEecC
Q 028237           86 YDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEASAK  151 (211)
Q Consensus        86 ~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~  151 (211)
                      ||++++++++.+ ..|+..+..+. ++.|+++|+||+|+.+            ...+..++++++++..++ +++++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999887765 4799999999999854            235788999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 028237          152 TAQN-VEEAFIKTAATIY  168 (211)
Q Consensus       152 ~g~~-v~~~~~~l~~~~~  168 (211)
                      +|.+ |.++|..+++...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.5e-33  Score=205.04  Aligned_cols=162  Identities=27%  Similarity=0.496  Sum_probs=143.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999889999999988888889998999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-----CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-----RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      |++++++++.+..|+..+........| ++|+||+|+.+.     .....++.+++++..+++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776544566 678999998421     11224567788888899999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          162 KTAATIYK  169 (211)
Q Consensus       162 ~l~~~~~~  169 (211)
                      ++.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4e-33  Score=205.09  Aligned_cols=165  Identities=31%  Similarity=0.529  Sum_probs=142.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999988888887666643 35554 6788999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR----RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~  159 (211)
                      ||++++.+++.+.. |+..+... ..+.|+++++||.|+...    +.+...+.++++...++ +++++||++|.|+.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            99999999999864 77766544 357999999999998543    24567888899999988 8999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028237          160 FIKTAATIYKKIQD  173 (211)
Q Consensus       160 ~~~l~~~~~~~~~~  173 (211)
                      |..+++.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999877554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4.4e-33  Score=200.91  Aligned_cols=163  Identities=48%  Similarity=0.866  Sum_probs=147.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ++.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~~~~  162 (211)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....+++..+++..+. .++++||++|.|++++|.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999998776666899999999999977767778888889988876 5899999999999999999


Q ss_pred             HHHH
Q 028237          163 TAAT  166 (211)
Q Consensus       163 l~~~  166 (211)
                      |.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-35  Score=201.64  Aligned_cols=173  Identities=40%  Similarity=0.724  Sum_probs=161.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC---------CEEEEEEEEeCCCcchhhhhhH
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID---------NKPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~   73 (211)
                      |++.|+++.+|.+|+|||+|+.+++.+.|...-..++|+++..+.+.++         +..+++++|||+|+++|+++..
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            7899999999999999999999999999999999999999998887773         2458899999999999999999


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT  152 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (211)
                      .|++.+=+++++||++++.++-+++.|+..++.+.- .+-.+++++||+|+++.+.++.+++..++.++++|||++||-+
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t  165 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT  165 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence            999999999999999999999999999999988775 5666889999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCc
Q 028237          153 AQNVEEAFIKTAATIYKKIQDGV  175 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~~~~~~~  175 (211)
                      |.||.+..+.|...+++++.+..
T Consensus       166 g~Nv~kave~LldlvM~Rie~~v  188 (219)
T KOG0081|consen  166 GTNVEKAVELLLDLVMKRIEQCV  188 (219)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2e-32  Score=205.07  Aligned_cols=167  Identities=49%  Similarity=0.794  Sum_probs=145.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+|+|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            456789999999999999999999988764 5667778888778888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHH-HHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           83 LLVYDITRRETFNHLAS-WLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~-~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      |+|||++++++++.+.. |...+..... .+.|+++|+||+|+........++...++...+++++++||+++.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999876 5555544332 468999999999997766677788888888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          161 IKTAATIYKK  170 (211)
Q Consensus       161 ~~l~~~~~~~  170 (211)
                      ++|.+.+.+.
T Consensus       170 ~~l~~~~~~~  179 (211)
T PLN03118        170 EELALKIMEV  179 (211)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=4.1e-33  Score=200.50  Aligned_cols=160  Identities=38%  Similarity=0.615  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++|..+.+...+.++.+ ......+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            6999999999999999999999988877777755 444566778888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+.+.+....++...+++.++++++++||++|.|+.++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 57999999999999765566677778888888899999999999999999999987


Q ss_pred             HH
Q 028237          166 TI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=7.4e-33  Score=198.92  Aligned_cols=160  Identities=59%  Similarity=1.002  Sum_probs=148.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++.++..+..|+..+......+.|+++++||.|+.+...+..+++..++...+++++++||+++.|+.++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877766789999999999997766777888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=9.8e-33  Score=198.64  Aligned_cols=163  Identities=61%  Similarity=0.955  Sum_probs=150.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |+.++.+++.+..|+..+..+...+.|+++++||+|+.+..+...+.++.+++..+++++++|+.+|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776689999999999997666677888888999899999999999999999999999998


Q ss_pred             HHH
Q 028237          167 IYK  169 (211)
Q Consensus       167 ~~~  169 (211)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            765

Rab GTPases are implicated in vesicle trafficking.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=7.2e-33  Score=201.58  Aligned_cols=160  Identities=24%  Similarity=0.526  Sum_probs=139.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+++.|||++|++.+..++..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888776664 4567788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEecC
Q 028237           86 YDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEASAK  151 (211)
Q Consensus        86 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~  151 (211)
                      ||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++++++++.+ +.++++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 4887776654 47999999999998543            3566778888988887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAATI  167 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~  167 (211)
                      +|.|+.++|+.++...
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=8.2e-33  Score=199.30  Aligned_cols=161  Identities=36%  Similarity=0.621  Sum_probs=142.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998888777777766554 456777888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+.+......++...+++..+++++++||++|.|+.++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888866543 68999999999999776666777778888888999999999999999999999988


Q ss_pred             HHH
Q 028237          166 TIY  168 (211)
Q Consensus       166 ~~~  168 (211)
                      ++.
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.4e-32  Score=197.55  Aligned_cols=159  Identities=36%  Similarity=0.629  Sum_probs=144.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID--NKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +||+++|.+|+|||||+++|..+.+...+.++.+.++....+.+.  +..+++.+||+||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999988888888888877777777  778999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |||++++++++.+..|+..+.... .+.|+++++||+|+..+..+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998886544 4899999999999977667778888999999999999999999999999999987


Q ss_pred             HH
Q 028237          165 AT  166 (211)
Q Consensus       165 ~~  166 (211)
                      ++
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.1e-32  Score=197.42  Aligned_cols=162  Identities=36%  Similarity=0.657  Sum_probs=144.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999998988888888889989999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ++++++++.+..|+..+..... ...|+++|+||.|+.+...  ...++...+++..+.+++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999988765543 3578999999999855432  235667778888889999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.1e-32  Score=197.55  Aligned_cols=160  Identities=31%  Similarity=0.584  Sum_probs=142.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888888888887777777888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++++++.+..|+..+..... +.|+++|+||+|+.+. ... .+..++++..+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999887765 8999999999999643 232 34456777778899999999999999999999988


Q ss_pred             HHH
Q 028237          167 IYK  169 (211)
Q Consensus       167 ~~~  169 (211)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=3.5e-32  Score=197.13  Aligned_cols=163  Identities=38%  Similarity=0.664  Sum_probs=145.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+++|.+|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999999888888888888778888899999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE  157 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~  157 (211)
                      |+|||++++++++.+..|+..+.....    .+.|+++++||+|+. ......++++++++..+. +++++||++|.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            999999999999999999888766542    468999999999986 445677888999988874 79999999999999


Q ss_pred             HHHHHHHHH
Q 028237          158 EAFIKTAAT  166 (211)
Q Consensus       158 ~~~~~l~~~  166 (211)
                      ++|.++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.6e-32  Score=206.39  Aligned_cols=164  Identities=31%  Similarity=0.533  Sum_probs=146.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|.+|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            45789999999999999999999999999889999998888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .+++..+++++++||++|.|+.++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999987664 57999999999998643 3344444 7777888999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          164 AATIYKK  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      ++.+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9988654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=5.1e-32  Score=196.36  Aligned_cols=162  Identities=43%  Similarity=0.800  Sum_probs=147.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-hhhHHhhcCCcEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   84 (211)
                      .++|+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999999888888888888888888899989999999999999886 578999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC---CCCHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT---AQNVEEAF  160 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---g~~v~~~~  160 (211)
                      |||++++.+++.+..|+..+..+.. .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999988877653 5799999999999987777778888899999999999999999   89999999


Q ss_pred             HHHHHHH
Q 028237          161 IKTAATI  167 (211)
Q Consensus       161 ~~l~~~~  167 (211)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.2e-32  Score=196.00  Aligned_cols=160  Identities=36%  Similarity=0.593  Sum_probs=141.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988887777754 455667778888889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+.+.......+...++...+++++++||++|.|+.++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 58999999999999765566667778888888899999999999999999999987


Q ss_pred             HH
Q 028237          166 TI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=6e-32  Score=195.04  Aligned_cols=158  Identities=34%  Similarity=0.535  Sum_probs=138.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+......+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999998877777755444 455667778899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |++++++++.+..|+..+.....   .+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887765432   579999999999997656677777888888889999999999999999999999


Q ss_pred             HH
Q 028237          164 AA  165 (211)
Q Consensus       164 ~~  165 (211)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=8.1e-32  Score=193.41  Aligned_cols=160  Identities=43%  Similarity=0.762  Sum_probs=145.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+++.+||+||+..+..++..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++++++.+..|+..+......+.|+++++||+|+.+......++...+++..+++++++|++++.|++++|.+|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999988866554579999999999996666677788888888889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.1e-32  Score=194.68  Aligned_cols=161  Identities=41%  Similarity=0.639  Sum_probs=141.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|||||||+++|.+..+...+.++.+. .....+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            48999999999999999999999888777777553 33556677888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++++++.+..|+..+..... .+.|+++++||+|+.+......++...+++..+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888765543 47899999999999766666777888888888999999999999999999999998


Q ss_pred             HHH
Q 028237          166 TIY  168 (211)
Q Consensus       166 ~~~  168 (211)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.3e-31  Score=192.72  Aligned_cols=161  Identities=46%  Similarity=0.848  Sum_probs=147.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++....+.+||+||++.+...+..+++++|++|+|+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999988878888888888888889998999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++++++.+..|+..+........|+++++||+|+.+......++...++...+++++++||++|.|+.++|++|++.
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd01860          82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK  161 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999998877765689999999999987666667888888999989999999999999999999999987


Q ss_pred             H
Q 028237          167 I  167 (211)
Q Consensus       167 ~  167 (211)
                      +
T Consensus       162 l  162 (163)
T cd01860         162 L  162 (163)
T ss_pred             h
Confidence            5

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=8.8e-32  Score=193.43  Aligned_cols=160  Identities=31%  Similarity=0.529  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|||||||+++|....+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998887777777777777788888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++.+++.+..|+..+.... .+.|+++++||+|+...   ...+...+++..+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998886543 47899999999998432   2344556777778999999999999999999999988


Q ss_pred             HHHH
Q 028237          167 IYKK  170 (211)
Q Consensus       167 ~~~~  170 (211)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.1e-31  Score=192.65  Aligned_cols=159  Identities=37%  Similarity=0.653  Sum_probs=139.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6999999999999999999999988877777765544 555677888888999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+.+ ......+...+++..+++++++||++|.|++++|++|++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876653 5889999999999865 345577788888888999999999999999999999987


Q ss_pred             HH
Q 028237          166 TI  167 (211)
Q Consensus       166 ~~  167 (211)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=5.5e-32  Score=199.37  Aligned_cols=161  Identities=32%  Similarity=0.562  Sum_probs=138.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3899999999999999999999999888888876665 345667888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEecCC
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHG-LIFMEASAKT  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~  152 (211)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..++...+++..+ ++++++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5888876554 489999999999996533            245566778887776 6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATIYK  169 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~  169 (211)
                      |.|++++|.+|++.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8.7e-32  Score=195.71  Aligned_cols=158  Identities=29%  Similarity=0.554  Sum_probs=138.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|||||||+.+|..+.+...+.++.+.. ....+.+++..+++.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            699999999999999999999999988888886543 3456678888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+.            ..+..+++..++++.+. +++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999986 5877776554 48999999999998542            24678888999999885 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAAT  166 (211)
Q Consensus       153 g~~v~~~~~~l~~~  166 (211)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.9e-31  Score=192.00  Aligned_cols=161  Identities=35%  Similarity=0.590  Sum_probs=141.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999999888777777755443 45566788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+..... .+.|+++++||+|+........++..++++..+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 5789999999999976666667778888888889999999999999999999998


Q ss_pred             HHH
Q 028237          165 ATI  167 (211)
Q Consensus       165 ~~~  167 (211)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.1e-31  Score=197.02  Aligned_cols=156  Identities=30%  Similarity=0.573  Sum_probs=140.3

Q ss_pred             EcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH
Q 028237           12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   91 (211)
Q Consensus        12 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (211)
                      +|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.|||++|++.|..++..|++++|++|+|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988888888988999888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237           92 ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      .+++.+..|+..+.... .+.|+++|+||+|+..+ .+..+. ..+++..++.++++||++|.||.++|.+|++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999997764 48999999999998543 344443 467788889999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=4.7e-31  Score=201.10  Aligned_cols=160  Identities=26%  Similarity=0.450  Sum_probs=140.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|..+.+...+.++.+ ++....+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888878765 555677888898999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhc---------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 028237           87 DITRRETFNHLASWLEDARQHA---------NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNV  156 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~---------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v  156 (211)
                      |++++++++.+..|+..+....         ..+.|+++++||+|+.+.+.+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            9999999999999988886542         24799999999999976566778888877764 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          157 EEAFIKTAATI  167 (211)
Q Consensus       157 ~~~~~~l~~~~  167 (211)
                      +++|++|.+.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999854

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=6.4e-31  Score=190.66  Aligned_cols=165  Identities=42%  Similarity=0.731  Sum_probs=146.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|||||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~~~  161 (211)
                      |++++.+++.+..|...+.....    .+.|+++++||+|+.+......++.+.+.+..+ ++++++|+++|.|+.++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888876654432    379999999999997655566788888888887 7899999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          162 KTAATIYKKI  171 (211)
Q Consensus       162 ~l~~~~~~~~  171 (211)
                      ++.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999888763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=5.9e-31  Score=188.85  Aligned_cols=161  Identities=39%  Similarity=0.736  Sum_probs=144.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|....+...+.++.+.......+.+.+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777777677777777777788889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++++++.+..|+..+......+.|+++++||+|+.+......++++++++..+++++++|++++.|+.++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988877766689999999999998666677788888888889999999999999999999999886


Q ss_pred             H
Q 028237          167 I  167 (211)
Q Consensus       167 ~  167 (211)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=6.2e-31  Score=189.41  Aligned_cols=160  Identities=28%  Similarity=0.561  Sum_probs=140.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +||+++|.+|||||||+++|...  .+...+.++.+.++....+.++ +..+++.+||++|++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6778888888888877777664 56799999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.......+...+....+++++++||.++.|+.++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998887664 479999999999997766666766777778888999999999999999999999


Q ss_pred             HHHH
Q 028237          164 AATI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.3e-31  Score=196.17  Aligned_cols=165  Identities=19%  Similarity=0.247  Sum_probs=138.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhcC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYRG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~   78 (211)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+|||||...+.        .....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888887777766677788888999999999965432        123345789


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQ  154 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~  154 (211)
                      +|++|+|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+.+..++.+.++. .++++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887664   3679999999999997666666666766654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYKKI  171 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~~  171 (211)
                      |++++|+.+++.+..+-
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999998887553

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2.1e-30  Score=187.55  Aligned_cols=167  Identities=48%  Similarity=0.844  Sum_probs=147.6

Q ss_pred             CC-cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCC
Q 028237            1 MS-YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA   79 (211)
Q Consensus         1 ~~-~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   79 (211)
                      |. +.+.++|+++|++|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|+..+...+..++..+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            55 45679999999999999999999998888777778778788788888888889999999999999999999999999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      |++++|||+.++.+++.+..|+..+......+.|+++++||+|+.+.+.......+.+.+....+++++|+++|.|+.++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999999999999998887766567999999999999766666666677787777788999999999999999


Q ss_pred             HHHHHHHH
Q 028237          160 FIKTAATI  167 (211)
Q Consensus       160 ~~~l~~~~  167 (211)
                      |+++.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.2e-30  Score=187.32  Aligned_cols=159  Identities=50%  Similarity=0.900  Sum_probs=143.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|||||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888778888888888777888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.+++.+..|+..+..+.. .+.|+++++||+|+.+ .....++...++...+++++++|+++|.|+.++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999988877754 6899999999999963 345677888899999999999999999999999999887


Q ss_pred             H
Q 028237          166 T  166 (211)
Q Consensus       166 ~  166 (211)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.4e-30  Score=188.48  Aligned_cols=161  Identities=35%  Similarity=0.605  Sum_probs=142.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6899999999999999999999988877777766444 566778888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |++++++++.+..|...+..... .+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|.++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999888866443 589999999999997766667777888888887 7899999999999999999999


Q ss_pred             HHHH
Q 028237          165 ATIY  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      .+++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=7.3e-31  Score=190.84  Aligned_cols=158  Identities=30%  Similarity=0.584  Sum_probs=137.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEEC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   88 (211)
                      |+|+|.+|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999888888765544 45667788889999999999999999999999999999999999


Q ss_pred             CCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237           89 TRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQ  154 (211)
Q Consensus        89 ~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~g~  154 (211)
                      +++++++.+. .|+..+.... .+.|+++++||+|+.+.            ..+..++...+++..+. +++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 4888776654 48999999999998642            23667778889999986 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIY  168 (211)
Q Consensus       155 ~v~~~~~~l~~~~~  168 (211)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=6.3e-31  Score=190.38  Aligned_cols=162  Identities=20%  Similarity=0.292  Sum_probs=140.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ..+||+++|.+|+|||||+++|.+..+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            5789999999999999999999999998 888888888887777888888889999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~  162 (211)
                      +|||++++.+++.+..|+..+...  .+.|+++|+||+|+.+.......+...+++..++. ++++||++|.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999988888765322  37899999999999654444344566777888874 799999999999999999


Q ss_pred             HHHHHH
Q 028237          163 TAATIY  168 (211)
Q Consensus       163 l~~~~~  168 (211)
                      |.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.98  E-value=2.1e-30  Score=184.91  Aligned_cols=159  Identities=59%  Similarity=0.962  Sum_probs=145.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999888888899998888888888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++++++.+..|+..+......+.|+++++||+|+........++...++...+++++++|++++.|+.++|.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999888776568999999999999655566788889999988999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=8.7e-31  Score=193.31  Aligned_cols=158  Identities=25%  Similarity=0.426  Sum_probs=129.4

Q ss_pred             eeeEEEEcCCCCCHHHHHH-HHhhCC-----CCCCCCCCcee-EEEEEE--------EEECCEEEEEEEEeCCCcchhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------ITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      .+||+++|..|+|||||+. ++....     +...+.+|++. +.+...        +.+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 555433     44566677642 222221        25688899999999999875  3


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC-------------------CCCCC
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH-------------------RRAVS  130 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  130 (211)
                      +...+++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            5667899999999999999999999997 5888886654 4789999999999864                   35678


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          131 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      .++++.++++++++|+++||++|.||+++|..+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=9.2e-31  Score=188.81  Aligned_cols=160  Identities=37%  Similarity=0.573  Sum_probs=136.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhhHHhhcCCcEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   86 (211)
                      ||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998887766666644333 45567888889999999999885 3456778899999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC-CCHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA-QNVEEAFIKT  163 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g-~~v~~~~~~l  163 (211)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+.+.+.+..++...+++..+++++++||++| .|++++|.++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  357999999999999766667788888999999999999999999 5999999999


Q ss_pred             HHHHH
Q 028237          164 AATIY  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=2.8e-30  Score=194.41  Aligned_cols=164  Identities=28%  Similarity=0.399  Sum_probs=140.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc-CCcEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR-GAAGALL   84 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   84 (211)
                      +||+++|.+|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||++|++  ..+...++. .+|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999888776 5666665557777788888889999999999998  233455666 9999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876543 579999999999997767777787888888889999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028237          164 AATIYKKIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      ++.+.....
T Consensus       159 ~~~~~~~~~  167 (221)
T cd04148         159 VRQIRLRRD  167 (221)
T ss_pred             HHHHHhhhc
Confidence            998875443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=2e-30  Score=185.64  Aligned_cols=153  Identities=18%  Similarity=0.361  Sum_probs=130.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|+.|+|||||+++|..+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999988887665544 3344 46678888889999999999974     34678899999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |++++.+++.+..|+..+..+.. .+.|+++|+||.|+.  ..+.+..++++++++.. ++.++++||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877754 578999999999984  24567788888898876 589999999999999999999


Q ss_pred             HHHH
Q 028237          163 TAAT  166 (211)
Q Consensus       163 l~~~  166 (211)
                      ++++
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.98  E-value=5.2e-33  Score=193.33  Aligned_cols=195  Identities=28%  Similarity=0.462  Sum_probs=175.7

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+|..+|++|+|..++||||+|++++.+.|...+..+++.++..+.+.+.+.++.+.+||++|+++|+.+...||+.+.+
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa   95 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA   95 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence            36789999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      .++||+.+|..+|+.+..|++.+..... .+|.++|-||+|+.+...+...+++.+++...+.++.+|+++..|+.++|.
T Consensus        96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~  174 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA  174 (246)
T ss_pred             eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence            9999999999999999999999877664 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc-CcccCCCCCcceeeccCCCCCCCC
Q 028237          162 KTAATIYKKIQD-GVFDVSNESYGIKVGYGGIPGPSG  197 (211)
Q Consensus       162 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  197 (211)
                      +|++++.+++.+ .+....+.+++.+....+.|++.+
T Consensus       175 YLaeK~~q~~kq~~~~~~~~q~sSsn~~~stsp~s~t  211 (246)
T KOG4252|consen  175 YLAEKLTQQKKQSLNANERKQSSSSNSTYSTSPPSTT  211 (246)
T ss_pred             HHHHHHHHHHHHHhhhchhhccccCCCCccCCCCcce
Confidence            999999999887 355555555555555454444443

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=3.4e-30  Score=187.33  Aligned_cols=159  Identities=27%  Similarity=0.521  Sum_probs=136.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|++|+|||||+++|..+.+...+.++.. ......+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998877777754 333456778888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      |++++.+++.+. .|+..+... ..+.|+++++||+|+.+.            ..+..+++..+++..++ +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999886 577777655 568999999999998543            24567788889988886 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATI  167 (211)
Q Consensus       153 g~~v~~~~~~l~~~~  167 (211)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=7.1e-30  Score=185.60  Aligned_cols=157  Identities=27%  Similarity=0.538  Sum_probs=136.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||++++..+.+...+.++. .+.....+.+++..+++.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999998888887774 4555566778888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      |++++.+++.+. .|+..+.... .+.|+++++||.|+.+            .+.+..+++..+++..+. +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 5777776432 4789999999999853            345677888999999887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAA  165 (211)
Q Consensus       153 g~~v~~~~~~l~~  165 (211)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.1e-29  Score=182.63  Aligned_cols=162  Identities=39%  Similarity=0.637  Sum_probs=141.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|+|||||+++|+...+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888777777755443 455677888899999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.++..+..|+..+..... .+.|+++|+||+|+.+.......+...+++.++++++++||++|.|+.++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 58999999999999764456677778888888999999999999999999999998


Q ss_pred             HHHH
Q 028237          166 TIYK  169 (211)
Q Consensus       166 ~~~~  169 (211)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=6.2e-32  Score=179.38  Aligned_cols=161  Identities=46%  Similarity=0.840  Sum_probs=149.6

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC
Q 028237           11 IIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        11 v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                      ++|.+++|||+|+-+|..+.|-. .-..++|+++..+.+..+++.+++++|||+|+++|++....||+.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            68999999999998888776653 44567899999999999999999999999999999999999999999999999999


Q ss_pred             CHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237           90 RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      +..++++.+.|+.++..+....+.+++++||+|+..++.+..++.+++++.+++|+.++||++|.|++..|-.|.+.+.+
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            99999999999999999988889999999999998888899999999999999999999999999999999999998876


Q ss_pred             HH
Q 028237          170 KI  171 (211)
Q Consensus       170 ~~  171 (211)
                      ..
T Consensus       162 ~~  163 (192)
T KOG0083|consen  162 LK  163 (192)
T ss_pred             hc
Confidence            64

>cd00876 Ras Ras family

Probab=99.97  E-value=2.3e-29  Score=180.23  Aligned_cols=158  Identities=39%  Similarity=0.633  Sum_probs=140.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+|+|++|||||||+++|+...+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777755 5556667778778999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ++++++++.+..|+..+..... .+.|+++++||+|+.+......++++.+....+++++++|++++.|+.++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888876655 689999999999997766677888899999989999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.8e-29  Score=184.56  Aligned_cols=159  Identities=19%  Similarity=0.321  Sum_probs=124.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|..+||||||+++|..+.+. .+.++.+.++.  .+..  ..+.+.+||+||++.+..+|..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999887765 45666666543  2333  35889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~  158 (211)
                      |||++++++++.+..++..+.... ..+.|++|++||+|+.+.  ...+++.+......     +.++++||++|.|+.+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e  168 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence            999999999988877766654322 247899999999998653  33444444332221     2466899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          159 AFIKTAATIYKK  170 (211)
Q Consensus       159 ~~~~l~~~~~~~  170 (211)
                      +|+||.+++.++
T Consensus       169 ~~~~l~~~~~~~  180 (181)
T PLN00223        169 GLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHhhc
Confidence            999999887654

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=5.3e-29  Score=184.77  Aligned_cols=160  Identities=25%  Similarity=0.408  Sum_probs=135.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|.+|+|||||+++|+...+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988877766643 4555667788888999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH-RRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ++++.+++.+..|+..+..... .+.|+++++||+|+.+ ...+..++..+... ..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888876654 5799999999999865 34444545544443 4567899999999999999999999


Q ss_pred             HHHH
Q 028237          165 ATIY  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.7e-28  Score=179.35  Aligned_cols=163  Identities=36%  Similarity=0.544  Sum_probs=140.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+|+|.+|+|||||+++|....+...+.++....+ ...+.+.+..+.+.+||+||++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888776766644443 455667777889999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |+++..+++.+..|+..+..... .+.|+++++||+|+...+....++...+++..+++++++||+++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999998887766543 57899999999999765666677778888888899999999999999999999999


Q ss_pred             HHHHH
Q 028237          166 TIYKK  170 (211)
Q Consensus       166 ~~~~~  170 (211)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            88655

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=6.2e-29  Score=182.17  Aligned_cols=165  Identities=22%  Similarity=0.347  Sum_probs=132.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      .+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            47999999999999999999998877644 566566665555544 3467899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEecCCCCCHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------HGLIFMEASAKTAQNVE  157 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~g~~v~  157 (211)
                      |||++++.+++.+..|+..+..... .+.|+++++||+|+.+  ....++.+.+...      .+++++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999998888888877755432 5799999999999854  2344555554431      12468899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 028237          158 EAFIKTAATIYKKIQD  173 (211)
Q Consensus       158 ~~~~~l~~~~~~~~~~  173 (211)
                      ++|++|.+.+.+..+.
T Consensus       160 ~l~~~l~~~l~~~~~~  175 (183)
T cd04152         160 EGLEKLYEMILKRRKM  175 (183)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999766543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=2.5e-29  Score=181.79  Aligned_cols=154  Identities=20%  Similarity=0.348  Sum_probs=123.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|.+|+|||||+++|..+.+. .+.++.+.++.  .+..  ..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999877664 35566666553  2333  45889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~  158 (211)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .+..++++.+.+.     ..++++++||++|.|+.+
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999988888776664432 25789999999999864  2456666665432     234689999999999999


Q ss_pred             HHHHHHH
Q 028237          159 AFIKTAA  165 (211)
Q Consensus       159 ~~~~l~~  165 (211)
                      +|+||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.1e-28  Score=179.59  Aligned_cols=159  Identities=32%  Similarity=0.591  Sum_probs=134.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+|+|++|||||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999999888888766555 345677888899999999999999998888999999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      |++++++++.+. .|+..+.... .+.|+++++||+|+.+.            ..+...+.+.+++..+. +++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998886 4777665543 47899999999998542            22345677888887775 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATI  167 (211)
Q Consensus       153 g~~v~~~~~~l~~~~  167 (211)
                      |.|++++|.++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3.7e-29  Score=181.14  Aligned_cols=156  Identities=22%  Similarity=0.382  Sum_probs=126.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+..+.  .+.+  ..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886643 5666555553  2333  35899999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~g~~v~~~~  160 (211)
                      ++++++++.+..|+..+..... .+.|+++++||+|+.+  ....++++.++...+      +.++++||++|.|+.++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999988887765432 4689999999999854  356666766654322      358899999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          161 IKTAATIYKK  170 (211)
Q Consensus       161 ~~l~~~~~~~  170 (211)
                      ++|.+.+.+.
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998876554

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=9.6e-29  Score=181.57  Aligned_cols=166  Identities=39%  Similarity=0.583  Sum_probs=153.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|+|||+|..+|....|...+.++.. +.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            47999999999999999999999999999999966 66688888999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |++++..+|+.+..+++.+.+... ...|+++|+||+|+.+.+.+..++++.++..++++++|+||+.+.+++++|..|.
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence            999999999999999999855444 5689999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028237          165 ATIYKKIQ  172 (211)
Q Consensus       165 ~~~~~~~~  172 (211)
                      +.+.....
T Consensus       162 r~~~~~~~  169 (196)
T KOG0395|consen  162 REIRLPRE  169 (196)
T ss_pred             HHHHhhhc
Confidence            98887444

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=7.3e-30  Score=183.93  Aligned_cols=153  Identities=22%  Similarity=0.350  Sum_probs=126.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      .|+++|.+|+|||||+++|.+..+...+.++.+...    ..++...+++.+||++|++.+..++..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999888777778776543    3345557899999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH----HHHHHHHHHcCCcEEEEecCC------CCCHH
Q 028237           88 ITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST----EEGEQFAKEHGLIFMEASAKT------AQNVE  157 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------g~~v~  157 (211)
                      .+++.++..+..|+..+.... .+.|+++|+||+|+.+......    .++..++++.++.++++||++      ++||.
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999998888887775443 5899999999999865442211    123556666778899999998      99999


Q ss_pred             HHHHHHHH
Q 028237          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~l~~  165 (211)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=6.4e-29  Score=178.14  Aligned_cols=152  Identities=20%  Similarity=0.375  Sum_probs=118.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++|..+.+. .+.++.+.+..  .+..  ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 45666665543  2333  3588999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHH-HHHH----HHcCCcEEEEecCCCCCHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEG-EQFA----KEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      |++++.+++.+..++..+.... ..+.|+++++||+|+.+.  ....++ ..+.    ...++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            9999999998888776664332 246899999999998542  223332 2221    1223457899999999999999


Q ss_pred             HHHHH
Q 028237          161 IKTAA  165 (211)
Q Consensus       161 ~~l~~  165 (211)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.4e-29  Score=183.14  Aligned_cols=156  Identities=20%  Similarity=0.336  Sum_probs=122.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|.+|+|||||+++|..+.+. .+.++.+.++.  .+..  ..+.+.+||++|++.+..++..+++++|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999877664 45566665553  3333  35889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~  158 (211)
                      |||++++++++.+..++..+.... ..+.|++|++||.|+.+.  ...+++.....     ...+.++++||++|.|+.+
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            999999999999888877765432 247899999999998643  23333333222     1233577899999999999


Q ss_pred             HHHHHHHHH
Q 028237          159 AFIKTAATI  167 (211)
Q Consensus       159 ~~~~l~~~~  167 (211)
                      +|+||.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=3.2e-28  Score=179.04  Aligned_cols=162  Identities=30%  Similarity=0.528  Sum_probs=136.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .||+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888776666654444 345667888889999999999988877778889999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC----------CCCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH----------RRAVSTEEGEQFAKEHGL-IFMEASAKTAQ  154 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~  154 (211)
                      |++++++++.+. .|+..+..+. .+.|+++|+||+|+.+          .+.+..++...+++..++ +++++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999987 5888876554 4699999999999854          234556778888888885 79999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYKK  170 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~  170 (211)
                      |++++|+++.+.+...
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=4.2e-28  Score=175.70  Aligned_cols=157  Identities=32%  Similarity=0.608  Sum_probs=131.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+++|.+|||||||+++|.+..+...+.++.. +.........+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999998777776644 444555677888899999999999998888888899999999999


Q ss_pred             ECCCHhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCCC-----------CCCHHHHHHHHHHcCC-cEEEEecCCC
Q 028237           87 DITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRR-----------AVSTEEGEQFAKEHGL-IFMEASAKTA  153 (211)
Q Consensus        87 d~~~~~~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~g  153 (211)
                      |++++.++..... |+..+.... .+.|+++|+||+|+.+..           .+..++...+....++ +++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999998877654 666655544 389999999999986543           2346677888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAA  165 (211)
Q Consensus       154 ~~v~~~~~~l~~  165 (211)
                      .|+.++|.+|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.8e-28  Score=178.48  Aligned_cols=160  Identities=24%  Similarity=0.363  Sum_probs=124.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|++|+|||||++++..+.+.. +.+|.+.++.  .+..  ..+.+.+||++|++.+..++..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998776654 5566665543  3333  35889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~  158 (211)
                      |||+++++++..+..++..+... ...+.|++|++||.|+.+.  ...+++.....     ...+.++++||++|.|+.+
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999998888776665332 1246899999999998542  23333322221     1223577999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          159 AFIKTAATIYKKI  171 (211)
Q Consensus       159 ~~~~l~~~~~~~~  171 (211)
                      +|++|.+.+.+.+
T Consensus       169 ~~~~l~~~i~~~~  181 (182)
T PTZ00133        169 GLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.3e-27  Score=179.49  Aligned_cols=166  Identities=31%  Similarity=0.541  Sum_probs=145.0

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            45567999999999999999999998888888889999998888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|+++|.|+.+.|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887654 47899999999998543 23233 3456777888999999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          162 KTAATIYKK  170 (211)
Q Consensus       162 ~l~~~~~~~  170 (211)
                      +|++.+...
T Consensus       162 ~ia~~l~~~  170 (215)
T PTZ00132        162 WLARRLTND  170 (215)
T ss_pred             HHHHHHhhc
Confidence            999988754

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=3.7e-28  Score=176.54  Aligned_cols=155  Identities=23%  Similarity=0.338  Sum_probs=123.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|++|||||||+++|.+..+ ..+.++.+.  ....+.++  .+.+.+||+||++.+..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4468999999999999999999998744 344555453  33344454  478999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++.++.....|+..+... ...+.|+++++||+|+.+.  ...+++..+..     ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            999999999998888887766443 2358999999999998653  24555555543     235689999999999999


Q ss_pred             HHHHHHHH
Q 028237          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~l~~  165 (211)
                      ++|+++++
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.2e-27  Score=177.00  Aligned_cols=148  Identities=23%  Similarity=0.419  Sum_probs=126.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-----CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-----NKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +||+++|..|+|||||+++|.++.+...+.+|++.++..+.+.+.     +..+.+.|||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999998899998888877777764     467899999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEecCCCCCCCCCCHHH----HHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHA-------------------NANMTIMLIGNKCDLAHRRAVSTEE----GEQFA  138 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~  138 (211)
                      +|+|||++++.+++.+..|+.++....                   ..+.|++||+||.|+.+++......    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999886532                   2478999999999997655444432    34567


Q ss_pred             HHcCCcEEEEecCCCC
Q 028237          139 KEHGLIFMEASAKTAQ  154 (211)
Q Consensus       139 ~~~~~~~~~~sa~~g~  154 (211)
                      +..+++.++.+..++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8889998888887653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.2e-27  Score=171.38  Aligned_cols=159  Identities=28%  Similarity=0.372  Sum_probs=124.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|..+.+...+..+ ...+ .....+.+..+++.+||++|...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886554332 2222 233455667789999999999988888888899999999999


Q ss_pred             ECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHc-C-CcEEEEecCCCCCHHHHHH
Q 028237           87 DITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEH-G-LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        87 d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~-~-~~~~~~sa~~g~~v~~~~~  161 (211)
                      |++++.+++.+. .|+..+.... .+.|+++++||+|+.+....  ..+++..++... + .+++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999986 5777776654 48999999999999664432  123333444433 2 3799999999999999999


Q ss_pred             HHHHHHH
Q 028237          162 KTAATIY  168 (211)
Q Consensus       162 ~l~~~~~  168 (211)
                      .+.+.+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=7e-28  Score=173.02  Aligned_cols=152  Identities=19%  Similarity=0.323  Sum_probs=118.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +|+++|.+|||||||+++|.+..+ ...+.++.+.+..  .+.  ...+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4556666665432  222  24588999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 028237           87 DITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~  158 (211)
                      |++++.++..+..|+..+....   ..+.|+++++||+|+.+.  ....+......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999888888877765432   247999999999998643  22333322221     1234589999999999999


Q ss_pred             HHHHHHH
Q 028237          159 AFIKTAA  165 (211)
Q Consensus       159 ~~~~l~~  165 (211)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=3.8e-27  Score=161.75  Aligned_cols=162  Identities=23%  Similarity=0.364  Sum_probs=131.2

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..++|+++|..||||||++++|.+.. .+...|+.+.+.  ++..+  +.+++++||.+|+....+.|++||..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4668999999999999999999999876 345555544444  44444  459999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHH------HHHHHHHcCCcEEEEecCCCCC
Q 028237           83 LLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEE------GEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      |+|+|..|+..+++....+..+... .-.+.|++|++||.|++..  .+.+.      .+.+++...++++.|||.+|++
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            9999999999988877766665432 2268999999999999632  22222      3455567789999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKKI  171 (211)
Q Consensus       156 v~~~~~~l~~~~~~~~  171 (211)
                      +.+.++||+..+.++.
T Consensus       166 l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998853

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2.4e-27  Score=172.42  Aligned_cols=154  Identities=27%  Similarity=0.373  Sum_probs=121.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|..+.+.. +.++.+.++.  .+.++  .+++.+||+||++.+...+..+++.+|++|+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35799999999999999999999877754 4556555543  33333  5889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~  158 (211)
                      |+|+++++++.....++..+..... .+.|+++++||+|+.+.  ...+++.+..     +..+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999988887777666644332 47999999999998652  2344432222     23456799999999999999


Q ss_pred             HHHHHHH
Q 028237          159 AFIKTAA  165 (211)
Q Consensus       159 ~~~~l~~  165 (211)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=2.8e-28  Score=175.64  Aligned_cols=165  Identities=32%  Similarity=0.586  Sum_probs=146.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ...+|++|+|..++|||+|+-.+..+.|+..+.||+. +-+...+.++ ++.+++.+|||+|+++|++++...|..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999988 5557778885 9999999999999999999998899999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028237           83 LLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      +++|++.++++++++. .|+.++..+. ++.|+|+|++|.|+.+.            ..+..++.+.++++.|+ .|+|+
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            9999999999999966 5888887776 69999999999999742            35678889999999995 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ||++..|+.++|+..++.....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRP  181 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcc
Confidence            9999999999999888866654

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=9.2e-28  Score=173.50  Aligned_cols=151  Identities=21%  Similarity=0.308  Sum_probs=120.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      +|+++|.+|||||||+++|.+. +...+.++.+.+.  ..+...  .+.+.+||+||+..+..++..|++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 6666777766553  334443  5889999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHH------HHHHHHcC--CcEEEEecCCC-----
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEG------EQFAKEHG--LIFMEASAKTA-----  153 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~sa~~g-----  153 (211)
                      ++++.+++.+..|+..+..... .+.|+++|+||.|+.+..  ...++      ..++++.+  +.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999998888765533 589999999999986543  22222      22332233  46888999998     


Q ss_pred             -CCHHHHHHHHHH
Q 028237          154 -QNVEEAFIKTAA  165 (211)
Q Consensus       154 -~~v~~~~~~l~~  165 (211)
                       .|+.+.|+||.+
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.1e-27  Score=172.71  Aligned_cols=158  Identities=29%  Similarity=0.438  Sum_probs=127.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+++|+.|||||||+++|....... ..||.+.+.  ..+.+.+  +.+.+||.+|+..+..+|..|++.+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            4678999999999999999999998765433 445545444  4444554  7899999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEecCCCCC
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------HGLIFMEASAKTAQN  155 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~g~~  155 (211)
                      |||+|.++++.+.+....+..+..... .+.|++|++||.|+.+  ....+++......      ..+.++.+||.+|.|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999988888877766655433 5899999999999865  3556666654432      234599999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATI  167 (211)
Q Consensus       156 v~~~~~~l~~~~  167 (211)
                      +.+.|+||.+++
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=2e-26  Score=167.42  Aligned_cols=142  Identities=41%  Similarity=0.680  Sum_probs=128.4

Q ss_pred             CCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc
Q 028237           29 KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA  108 (211)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~  108 (211)
                      +.|...+.+|++.++....+.+++..+++.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677889999999988889999999999999999999999999999999999999999999999999999998887665


Q ss_pred             CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       109 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ..+.|++||+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|.+|++.+.+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            56789999999999976666788888899998899999999999999999999999887653

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=5.6e-27  Score=172.81  Aligned_cols=156  Identities=28%  Similarity=0.348  Sum_probs=125.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ....+|+++|++|||||||+++|.+..+. .+.++.+.+.  ..+.+++  +.+.+||+||+..+..++..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999987764 4455544433  3444554  78899999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----------------cCCcEE
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----------------HGLIFM  146 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  146 (211)
                      +|+|+++..+++....++..+..... .+.|+++++||+|+..  .+..++++.+...                ..++++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999988888887777755433 5799999999999854  4556666666543                224589


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ++||++|.|+.++|+||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=5.7e-27  Score=169.21  Aligned_cols=152  Identities=26%  Similarity=0.389  Sum_probs=118.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|+|+|++|+|||||+++|.+...      ...+.++.+...  ..+.++  ...+.+||+||++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      223344444444  234444  4799999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCcEEEEecCCC
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-------HGLIFMEASAKTA  153 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~g  153 (211)
                      +++|+|+.+++++.....++..+.... ..+.|+++++||+|+.+.  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888888877765543 258999999999998553  344555544433       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAA  165 (211)
Q Consensus       154 ~~v~~~~~~l~~  165 (211)
                      .|++++|+||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=4.1e-27  Score=168.77  Aligned_cols=152  Identities=24%  Similarity=0.424  Sum_probs=118.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      +|+++|++|||||||+++|.+..+... .++.+.++  ..+... ..+.+.+||++|++.+..++..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999887543 45555443  333333 35799999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH------HHcCCcEEEEecCCCCCHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      +.++.++..+..|+..+..... .+.|+++++||+|+.+.  ...+++....      ...+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999988888887777654332 58999999999998542  2233333222      2234569999999999999999


Q ss_pred             HHHHH
Q 028237          161 IKTAA  165 (211)
Q Consensus       161 ~~l~~  165 (211)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=4.5e-27  Score=168.29  Aligned_cols=151  Identities=21%  Similarity=0.334  Sum_probs=120.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|.+|||||||++++.+... ....++.+.+.  ..+.+.  ...+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998874 34455545443  334443  4789999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +++++++..+..++..+.... ..+.|+++++||+|+.+..  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999998888877765543 3589999999999986533  3344443332     2346799999999999999999


Q ss_pred             HHHH
Q 028237          162 KTAA  165 (211)
Q Consensus       162 ~l~~  165 (211)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1.5e-26  Score=165.60  Aligned_cols=151  Identities=23%  Similarity=0.328  Sum_probs=114.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+|+|++++|||||+++|....+.. +.++.+.+..  .+..  ....+.+||+||++.+..++..+++.+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 3455454442  2333  35789999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      ++++.++.....++..+.. ....+.|+++++||+|+.+..  ...++.....     ..+++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887766665554433 222579999999999986432  2333322211     1234699999999999999999


Q ss_pred             HHHH
Q 028237          162 KTAA  165 (211)
Q Consensus       162 ~l~~  165 (211)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=4.5e-26  Score=176.56  Aligned_cols=139  Identities=25%  Similarity=0.515  Sum_probs=121.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-------------EEEEEEEEeCCCcchhhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-------------KPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~   71 (211)
                      ..+||+|+|..|+|||||+++|..+.+...+.++++.++....+.+++             ..+.++|||++|++.|..+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            358999999999999999999999999888899999988877777642             4688999999999999999


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC------------CCCcEEEEEecCCCCCCC---C---CCHHH
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN------------ANMTIMLIGNKCDLAHRR---A---VSTEE  133 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~~  133 (211)
                      +..|+++++++|+|||+++..+++.+..|+..+..+..            .+.|++||+||+|+.+++   .   +..++
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~  179 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA  179 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence            99999999999999999999999999999999977631            258999999999996542   2   35788


Q ss_pred             HHHHHHHcCC
Q 028237          134 GEQFAKEHGL  143 (211)
Q Consensus       134 ~~~~~~~~~~  143 (211)
                      ++++++++++
T Consensus       180 a~~~A~~~g~  189 (334)
T PLN00023        180 ARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHcCC
Confidence            9999999874

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=4.8e-26  Score=167.00  Aligned_cols=156  Identities=21%  Similarity=0.262  Sum_probs=121.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+++|.+|||||||+++|.+..+.. +.++.+.+.  ..+.+.  .+++.+||+||+..+..++..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456899999999999999999999876643 334433332  233333  478999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEec
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------------HGLIFMEASA  150 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa  150 (211)
                      +|+|++++.++.....++..+.... ..+.|+++++||+|+..  ..+.++++.....            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999998888877776664432 25789999999999854  3455655544321            1234999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAAT  166 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~  166 (211)
                      ++|.|++++++||..+
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=4.2e-26  Score=162.74  Aligned_cols=152  Identities=23%  Similarity=0.354  Sum_probs=120.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      .|+|+|++|||||||+++|.+..+...+.++.+..+..  +....  +.+.+||+||++.+..++..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            38999999999999999999999888888877766543  33333  789999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHH
Q 028237           88 ITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      ++++.++.....++..+.... ..+.|+++++||+|+.+..  ...+.....     ....++++++|+++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999988888777766654432 2578999999999986532  222222221     12345789999999999999999


Q ss_pred             HHHH
Q 028237          162 KTAA  165 (211)
Q Consensus       162 ~l~~  165 (211)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=2.7e-25  Score=162.20  Aligned_cols=154  Identities=25%  Similarity=0.281  Sum_probs=113.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCC------CceeEEEEEEEEE-----CCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMITI-----DNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~   69 (211)
                      +|+++|..++|||||+++|++..       +...+.+      +.+.++....+.+     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       1111211      1234444333332     5667899999999999999


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc---EE
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI---FM  146 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  146 (211)
                      .++..+++.+|++|+|||+++..+......|....    ..+.|+++++||+|+.+..  .......+++..+++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876655555554322    2378999999999985422  222334556666653   89


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=3e-25  Score=175.50  Aligned_cols=164  Identities=15%  Similarity=0.086  Sum_probs=123.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhh---HHhhcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSIT---RSYYRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~   78 (211)
                      ...|+|+|.+|||||||+++|+.........+.++.....-.+.+.+ ..++.+||+||..+    ...+.   ..+++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            45799999999999999999998765544444445555555555532 35789999999642    11233   334567


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      ++++|+|+|+++.++++.+..|..++..+..  .++|+++|+||+|+.+.........+.+....+++++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988788888899988877654  47899999999999654433334455555666788999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIYKK  170 (211)
Q Consensus       157 ~~~~~~l~~~~~~~  170 (211)
                      +++|++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887653

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3.2e-25  Score=160.21  Aligned_cols=156  Identities=21%  Similarity=0.188  Sum_probs=109.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh---------hhhHHhhc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---------SITRSYYR   77 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   77 (211)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.......+  ....+.+.+|||||+....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987654333222222322222  2235899999999974211         11111123


Q ss_pred             CCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           78 GAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      .+|++|+|+|+++..+  .+....|+..+.... .+.|+++++||+|+.+....  .....+....+++++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCC
Confidence            4689999999998654  355556777765443 37899999999998654332  224555665678899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATI  167 (211)
Q Consensus       156 v~~~~~~l~~~~  167 (211)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.8e-25  Score=160.74  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----hhhhhhHHh---hcCCc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----SFRSITRSY---YRGAA   80 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d   80 (211)
                      +|+|+|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654322222222222222233333 2489999999963    222233333   44699


Q ss_pred             EEEEEEECCCH-hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 028237           81 GALLVYDITRR-ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNV  156 (211)
Q Consensus        81 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v  156 (211)
                      ++++|+|++++ .+++.+..|++.+.....  .+.|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888766542  37899999999998654332 3444455555 3778999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          157 EEAFIKTAAT  166 (211)
Q Consensus       157 ~~~~~~l~~~  166 (211)
                      +++|++|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.9e-24  Score=153.80  Aligned_cols=158  Identities=33%  Similarity=0.485  Sum_probs=127.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999987777777878888777777777778999999999999999999999999999999


Q ss_pred             EECCCH-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           86 YDITRR-ETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~-~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|+... .++.... .+...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998776 5555544 55555555444488999999999996543 23333344444456679999999999999999987


Q ss_pred             H
Q 028237          164 A  164 (211)
Q Consensus       164 ~  164 (211)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.3e-25  Score=156.02  Aligned_cols=158  Identities=21%  Similarity=0.317  Sum_probs=131.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|..+|||||++++|..+..-.. .||+|.......+    +.+++.+||.+|++.++.+|++|+++.+++||
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            468999999999999999999988777555 7777776655444    36999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~  158 (211)
                      |+|.+|.+.+..+...+..+..+.+ .+.|+++++||.|+++  ..+..++......     ..+.+..++|.+|+|+.|
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            9999999999998887777666655 6899999999999965  3555555444333     345688999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          159 AFIKTAATIYK  169 (211)
Q Consensus       159 ~~~~l~~~~~~  169 (211)
                      .++|+.+.+..
T Consensus       169 gl~wl~~~~~~  179 (181)
T KOG0070|consen  169 GLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=7.7e-25  Score=163.19  Aligned_cols=157  Identities=19%  Similarity=0.181  Sum_probs=114.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhhhHH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES---------FRSITRS   74 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   74 (211)
                      +..++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+ ...+.+||+||...         +...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4468999999999999999999998875443333334444444444444 23789999999732         22111 2


Q ss_pred             hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237           75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~  154 (211)
                      .+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+....     ..+....+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3678999999999999888777777776666554457899999999998553221     13444556789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATI  167 (211)
Q Consensus       155 ~v~~~~~~l~~~~  167 (211)
                      |+.++|++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=3.5e-24  Score=155.52  Aligned_cols=154  Identities=23%  Similarity=0.345  Sum_probs=115.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|++|||||||++++.+..+.. ..++.+.+.  ..+...+  ..+.+||++|+..+...+..+++.+|++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            36899999999999999999999876542 444445433  3344444  788999999999998899999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-----GLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~g~~v~~  158 (211)
                      |+|+.+..++.....++..+... ...+.|+++++||+|+.+..  ..+++.......     .++++++||++|.|+++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE  165 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence            99999988888777766555433 23479999999999985432  222222221111     12478999999999999


Q ss_pred             HHHHHHH
Q 028237          159 AFIKTAA  165 (211)
Q Consensus       159 ~~~~l~~  165 (211)
                      +|+||++
T Consensus       166 ~~~~l~~  172 (173)
T cd04155         166 GMNWVCK  172 (173)
T ss_pred             HHHHHhc
Confidence            9999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.7e-24  Score=155.55  Aligned_cols=152  Identities=20%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC---CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +.|+|+|.+|+|||||+++|.+..   +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   3223333334444444455542 468999999999998877778889999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHH---cCCcEEEEecCCCCC
Q 028237           84 LVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKE---HGLIFMEASAKTAQN  155 (211)
Q Consensus        84 ~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~g~~  155 (211)
                      +|+|+++   +++.+.+    ..+...  ...|+++++||+|+.+...  ...++.......   .+.+++++||++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333322    222221  1249999999999865321  112334444444   457899999999999


Q ss_pred             HHHHHHHHHH
Q 028237          156 VEEAFIKTAA  165 (211)
Q Consensus       156 v~~~~~~l~~  165 (211)
                      ++++|..+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-24  Score=145.00  Aligned_cols=174  Identities=23%  Similarity=0.317  Sum_probs=146.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCCceeEEEEEEE-EECCEEEEEEEEeCCCcchh-hhhhHHhhcCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMI-TIDNKPIKLQIWDTAGQESF-RSITRSYYRGAA   80 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   80 (211)
                      ...||+|+|..++|||+++++|+.....  ....+|+.. ++...+ +-++..-.+.|+||.|...+ ..+.++|++.+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            3679999999999999999998876543  344455433 334444 33566678999999998887 678999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ++++||+..++++|+.+..+...+..+.+ ..+|++|++||+|+.+..++..+-...|++...+.++++++++...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999999998888888777 68999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcccCC
Q 028237          160 FIKTAATIYKKIQDGVFDVS  179 (211)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~~  179 (211)
                      |.++...+.+-..+..+..+
T Consensus       167 f~~l~~rl~~pqskS~Fpl~  186 (198)
T KOG3883|consen  167 FTYLASRLHQPQSKSTFPLS  186 (198)
T ss_pred             HHHHHHhccCCcccccCcch
Confidence            99999988776665554443

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=2.1e-23  Score=157.08  Aligned_cols=169  Identities=38%  Similarity=0.537  Sum_probs=138.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|+.|||||||+++|....+...+.++.+..+...........+++.+||++|++++..++..|+..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999999999988888777776666688999999999999999999999999999999


Q ss_pred             EECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC------------CCHHHHHHHHHHc---CCcEEEEe
Q 028237           86 YDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA------------VSTEEGEQFAKEH---GLIFMEAS  149 (211)
Q Consensus        86 ~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~s  149 (211)
                      +|..+ ....+....|...+........|+++++||+|+.....            .............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 55566677788888777655799999999999966532            2222222222222   23389999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhcC
Q 028237          150 AK--TAQNVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       150 a~--~g~~v~~~~~~l~~~~~~~~~~~  174 (211)
                      ++  ++.++.++|..+.+.+.+.....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            99  99999999999999998765443

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.9e-24  Score=152.08  Aligned_cols=134  Identities=21%  Similarity=0.228  Sum_probs=100.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-----hhhhhhHHhhcCCcEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA   82 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   82 (211)
                      ||+++|.+|+|||||+++|.+..+.  +.++.+.++       ..     .+||+||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  223322222       11     589999972     3444433 58999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~~~  161 (211)
                      |+|||++++.++.. ..|...+      ..|+++++||+|+.+. ....++.+++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887654 2333221      3499999999998653 3456677788887776 799999999999999999


Q ss_pred             HHH
Q 028237          162 KTA  164 (211)
Q Consensus       162 ~l~  164 (211)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=2.6e-23  Score=146.68  Aligned_cols=153  Identities=50%  Similarity=0.815  Sum_probs=123.7

Q ss_pred             EEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC
Q 028237           11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        11 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   89 (211)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 45555554 7777777777777899999999999998888888999999999999999


Q ss_pred             CHhhHHHHHHHH-HHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           90 RRETFNHLASWL-EDARQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        90 ~~~~~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ++.+......|+ .........+.|+++++||+|+.+........ ...+.....++++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988888773 33334444689999999999986544332222 4455566678999999999999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.1e-23  Score=150.58  Aligned_cols=148  Identities=18%  Similarity=0.208  Sum_probs=112.5

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------hhHHhhc--CCcEE
Q 028237           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA   82 (211)
Q Consensus        11 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~   82 (211)
                      |+|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998876555556556666666666665  5799999999876653      4566664  89999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|+|+.++....   .+...+..   .++|+++++||+|+.+...... ....+....+++++++|+.++.|+.++|++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999865422   33333332   3789999999999965443332 345677777899999999999999999999


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=3.5e-24  Score=158.41  Aligned_cols=162  Identities=20%  Similarity=0.200  Sum_probs=113.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh--CCCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   72 (211)
                      -+|+++|.+++|||||+++|+.  ..+....            ..+.+.+.......+....+.+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443332            1233555555555566667899999999999999999


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcCCc
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAK-------EHGLI  144 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  144 (211)
                      ..+++.+|++++|||+++.. ......++..+..   .+.|+++++||+|+.+... ...+++..+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2222233333322   3789999999999864322 11334444442       23678


Q ss_pred             EEEEecCCCCCHHHH------HHHHHHHHHHHHh
Q 028237          145 FMEASAKTAQNVEEA------FIKTAATIYKKIQ  172 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~------~~~l~~~~~~~~~  172 (211)
                      ++++||++|.|+.++      +.+|++++.+..+
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~  192 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP  192 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence            999999999887554      4455555555443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.7e-23  Score=151.09  Aligned_cols=156  Identities=18%  Similarity=0.171  Sum_probs=110.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      .|+|+|.+|+|||||+++|....+.....+..+.+.....+... +....+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999888776555444444433444433 13578999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHH------HcCCcEEEEecCCCCCHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAK------EHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~sa~~g~~v~~~  159 (211)
                      |+++....+.. ..+..+..   .+.|+++++||+|+.+..... ......+..      ...++++++|+.+|.|+.++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99874322211 11222222   378999999999986432111 111111111      12357999999999999999


Q ss_pred             HHHHHHHH
Q 028237          160 FIKTAATI  167 (211)
Q Consensus       160 ~~~l~~~~  167 (211)
                      |++|.+..
T Consensus       158 ~~~l~~~~  165 (168)
T cd01887         158 LEAILLLA  165 (168)
T ss_pred             HHHHHHhh
Confidence            99998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=1.7e-23  Score=165.42  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=118.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhHHh---hcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITRSY---YRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~   78 (211)
                      ...|+|+|.++||||||+++|+.........+.++.......+.+.+ ..++.+||+||..+.    ..+...|   ++.
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            45899999999999999999998765443333334444444455543 468899999997421    2333344   457


Q ss_pred             CcEEEEEEECCCH---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           79 AAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        79 ~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      ++++++|+|+++.   ++++.+..|..++..+..  .++|++||+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999986   677778888887766543  4789999999999865422 233445566666788999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATI  167 (211)
Q Consensus       154 ~~v~~~~~~l~~~~  167 (211)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=4.6e-24  Score=150.12  Aligned_cols=148  Identities=20%  Similarity=0.263  Sum_probs=107.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch------hhhhhHHhh--cC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES------FRSITRSYY--RG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~   78 (211)
                      |+|+++|.||+|||||+|+|++........+..+.+.....+.+.+  ..+.++|+||...      ...+...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999998777777777777666677666  7888999999432      233445554  68


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      .|++|+|+|+++.+.-..   +..++..   .+.|+++++||+|...+..... +...+.+..++|++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999987543222   2222222   3899999999999855443322 36677778899999999999999999


Q ss_pred             HHHHH
Q 028237          159 AFIKT  163 (211)
Q Consensus       159 ~~~~l  163 (211)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=3.8e-24  Score=159.10  Aligned_cols=154  Identities=21%  Similarity=0.207  Sum_probs=105.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC-----------cchhhhhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-----------QESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~   72 (211)
                      ...++|+++|.+|+|||||+++|.+..+.....++  .+.....+.+.    .+.+|||||           .+.+..++
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            45689999999999999999999988766554443  44443334333    588999999           45666666


Q ss_pred             HHhhc----CCcEEEEEEECCCHhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 028237           73 RSYYR----GAAGALLVYDITRRETF-N---------HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA  138 (211)
Q Consensus        73 ~~~~~----~~d~~i~v~d~~~~~~~-~---------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  138 (211)
                      ..++.    .++++++|+|..+.... +         ....+...+.   ..+.|+++|+||+|+.+..   .+...++.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            66654    35688888887643211 0         0011122222   2379999999999985432   33455555


Q ss_pred             HHcCC---------cEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          139 KEHGL---------IFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       139 ~~~~~---------~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      +..+.         +++++||++| |++++|++|.+.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            55554         4899999999 9999999999876543

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=4.7e-23  Score=164.26  Aligned_cols=155  Identities=21%  Similarity=0.180  Sum_probs=114.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRS   74 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   74 (211)
                      +..++|+++|.+|+|||||+|+|++........+..+.++....+.+.+ ...+.+|||+|..         .|... ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            3458999999999999999999999875544444445566666677743 3588999999972         22222 23


Q ss_pred             hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237           75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~  154 (211)
                      .+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+.     .....+ .....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-----~~v~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-----PRIERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-----HhHHHH-HhCCCCEEEEEccCCC
Confidence            4789999999999999888777776666665554457899999999998542     122222 1223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAAT  166 (211)
Q Consensus       155 ~v~~~~~~l~~~  166 (211)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=145.54  Aligned_cols=156  Identities=20%  Similarity=0.326  Sum_probs=126.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+.+.++|..+||||||+|....+.+.+...|+.|.+.    ..+....+.+.+||.+|+..|+.+|..|++.++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            57899999999999999999999888888888887776    44555678999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHH-HHhcCCCCcEEEEEecCCCCCCCCCCHHH-HHHH----HHHcCCcEEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHRRAVSTEE-GEQF----AKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~----~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      +|+.+++.+...+..+..+ .+....++|++|++||.|+++.  ..... ++++    .....+.+|.+|+++..|++-+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            9999999887777655554 4444579999999999998653  22222 2221    2223345899999999999999


Q ss_pred             HHHHHHHH
Q 028237          160 FIKTAATI  167 (211)
Q Consensus       160 ~~~l~~~~  167 (211)
                      .+||++.-
T Consensus       174 ~~Wli~hs  181 (186)
T KOG0075|consen  174 LDWLIEHS  181 (186)
T ss_pred             HHHHHHHh
Confidence            99998853

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=8.6e-23  Score=158.19  Aligned_cols=153  Identities=19%  Similarity=0.122  Sum_probs=105.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhcCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYRGA   79 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~   79 (211)
                      +|+|+|.+|+|||||+|+|++...........++......+...+ ..++.+|||||.....        .....+++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999999876543332222222233333333 3579999999965321        1234567899


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHH
Q 028237           80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEE  158 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~  158 (211)
                      |++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+.. ...+....+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999866543  333333333   378999999999985422 122334445444454 799999999999999


Q ss_pred             HHHHHHHHH
Q 028237          159 AFIKTAATI  167 (211)
Q Consensus       159 ~~~~l~~~~  167 (211)
                      ++++|.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            999988765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=4.8e-23  Score=149.71  Aligned_cols=155  Identities=20%  Similarity=0.217  Sum_probs=107.9

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhh---HHhhcCCcEEE
Q 028237           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSIT---RSYYRGAAGAL   83 (211)
Q Consensus        11 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~i   83 (211)
                      |+|++|||||||+++|.+........+..+.......+.+.+ ...+.+||+||....    ..++   ..+++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865322222223333333344441 467899999997432    2222   33577899999


Q ss_pred             EEEECCCH------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           84 LVYDITRR------ETFNHLASWLEDARQHAN-------ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        84 ~v~d~~~~------~~~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      +|+|+.++      .+++....|...+.....       .+.|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      467777777666654332       37999999999999654332222223344445677999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAAT  166 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~  166 (211)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.6e-22  Score=135.55  Aligned_cols=155  Identities=21%  Similarity=0.379  Sum_probs=125.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+.+|..++||||++..|..+.. ....+|+|.+.  ..+++  +.+.+++||.+|++..+.+|++||....++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            57999999999999999999986544 44455555555  33433  458999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~~  159 (211)
                      +|..+.+.+++++..+..+..+.+ ...|++|++||.|+++  ....+++..+.+.     ..+.++++||.+|.++.|.
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            999999888888877666655554 6899999999999976  4567776665543     3456899999999999999


Q ss_pred             HHHHHHHH
Q 028237          160 FIKTAATI  167 (211)
Q Consensus       160 ~~~l~~~~  167 (211)
                      |.||...+
T Consensus       170 lswlsnn~  177 (180)
T KOG0071|consen  170 LSWLSNNL  177 (180)
T ss_pred             HHHHHhhc
Confidence            99998754

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=5e-22  Score=160.93  Aligned_cols=160  Identities=17%  Similarity=0.183  Sum_probs=118.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhhHHh---hcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSITRSY---YRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~   78 (211)
                      ...|+|+|.+|||||||+++|++........+.++.....-.+.+.+ ...+.+||+||...    ...+...|   ++.
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            44899999999999999999998765444334434444444444432 46799999999642    22344444   456


Q ss_pred             CcEEEEEEECCCH---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           79 AAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        79 ~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      ++++|+|+|+++.   +.++....|..++..+..  .++|++||+||+|+.+    ..+..+.+.+..+.+++++||+++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence            8999999999864   567777778888876643  4799999999999843    234556677766788999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATIYKK  170 (211)
Q Consensus       154 ~~v~~~~~~l~~~~~~~  170 (211)
                      .|+++++++|.+.+.+.
T Consensus       313 eGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        313 QGLDELLYAVAELLEET  329 (424)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999998877654

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=1.7e-22  Score=144.00  Aligned_cols=146  Identities=24%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hhHHhhc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------ITRSYYR   77 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   77 (211)
                      ++|+++|++|+|||||++++.+..... ...+..+..+....+.++  ..++.+|||||...+..        ....++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999876432 223333444444444444  36789999999765432        2234577


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+.+....       .....+.+++++||+++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998777665444332      247999999999998654332       344456789999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          158 EAFIKTAATI  167 (211)
Q Consensus       158 ~~~~~l~~~~  167 (211)
                      +++.+|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=5e-22  Score=162.64  Aligned_cols=154  Identities=21%  Similarity=0.177  Sum_probs=117.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh--------hHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--------TRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   75 (211)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999987542 33444446666666677766  56789999998654432        2457


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      ++.+|++++|||++++.+.+..  |+..+..   .+.|+++|+||+|+.+.      +...+++..+.+++++||++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            8899999999999988776654  5554432   37899999999998542      12345666778899999998 69


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 028237          156 VEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       156 v~~~~~~l~~~~~~~~~  172 (211)
                      +.++|+.|.+.+.+...
T Consensus       348 I~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       348 IKALVDLLTQKINAFYS  364 (442)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.3e-22  Score=166.86  Aligned_cols=176  Identities=19%  Similarity=0.154  Sum_probs=117.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYY   76 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   76 (211)
                      ..+|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+.+  ..+.+|||||.+.        +...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            468999999999999999999987653 23333334444444444554  5688999999762        334456678


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCC
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQN  155 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~  155 (211)
                      +.+|++|+|+|+++..+... ..+...+..   .++|+++|+||+|+....   .+..+.+  ..++ ..+++||++|.|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g  186 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG  186 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence            99999999999998655432 233333332   379999999999985421   1111222  2333 357999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCC
Q 028237          156 VEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPS  196 (211)
Q Consensus       156 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (211)
                      ++++|++|++.+.+....    ...+....+++-.|.|+..
T Consensus       187 i~eL~~~i~~~l~~~~~~----~~~~~~~~kI~iiG~~nvG  223 (472)
T PRK03003        187 VGDLLDAVLAALPEVPRV----GSASGGPRRVALVGKPNVG  223 (472)
T ss_pred             cHHHHHHHHhhccccccc----ccccccceEEEEECCCCCC
Confidence            999999999887542111    1112234666666666443

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=3.3e-22  Score=159.09  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=107.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhh-------H
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSIT-------R   73 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~   73 (211)
                      ....++|+++|.+|+|||||+|+|.+..+... ..+..+.......+..++  .++.+|||||... +..+.       .
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            34567999999999999999999998877532 222222333333344444  5789999999743 22222       1


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEec
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASA  150 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa  150 (211)
                      ..+..+|++++|+|..+.  +.... .|+..+...   +.|.++|+||+|+.+.   ...++.+++...+  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            346799999999997653  22232 344444332   5688899999998542   2445555555544  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~  169 (211)
                      ++|.|++++|++|.+.+.+
T Consensus       199 ktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             cCccCHHHHHHHHHHhCCC
Confidence            9999999999998876544

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.5e-22  Score=148.30  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=102.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC----CCCC---CCCCCceeEEEEEEEEEC------------CEEEEEEEEeCCCcch
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK----RFQP---VHDLTIGVEFGARMITID------------NKPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   67 (211)
                      ++|+++|+.++|||||+++|+..    .+..   ...+..+.........+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999863    1111   111222333322223332            3367899999999876


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHH------
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAK------  139 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------  139 (211)
                      +........+.+|++++|+|+.+.........+. .. ..  .+.|+++++||+|+.....  ...++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444567789999999998744332222221 11 11  2679999999999864221  11222222111      


Q ss_pred             -HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          140 -EHGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       140 -~~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                       ..+++++++||++|.|+++++++|.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=4e-22  Score=146.44  Aligned_cols=156  Identities=22%  Similarity=0.188  Sum_probs=110.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc--------------eeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMITIDNKPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   73 (211)
                      +|+|+|.+|+|||||++.|.+...........              +.+.......+......+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999887665442211              1222222222222357899999999999988899


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH-----------
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKE-----------  140 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~-----------  140 (211)
                      .+++.+|++++|+|..++..... ..++..+..   .+.|+++++||+|+......  ....+++..+.           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            99999999999999987654332 223333332   48999999999998652211  12333333333           


Q ss_pred             ---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          141 ---HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       141 ---~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                         ...+++++||++|.|+.++|.+|.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               346799999999999999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=5.3e-22  Score=141.93  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----hhhhhhHHhhcCCcEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL   83 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   83 (211)
                      +|+++|.+|+|||||+|+|.+....  ...+.+       +.+...    .+||+||..    .+.......++.+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998865311  111111       222222    279999972    22222233478999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--cEEEEecCCCCCHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL--IFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|+++..++.  ..|+..+    ..+.|+++++||+|+.+   ...+....+++..++  +++++||++|.|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999876542  2232222    23679999999999854   345667777777775  899999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 028237          162 KTAATIYKKIQD  173 (211)
Q Consensus       162 ~l~~~~~~~~~~  173 (211)
                      ++.+.+.+....
T Consensus       141 ~l~~~~~~~~~~  152 (158)
T PRK15467        141 YLASLTKQEEAG  152 (158)
T ss_pred             HHHHhchhhhcc
Confidence            998887776554

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=3.9e-22  Score=136.05  Aligned_cols=115  Identities=33%  Similarity=0.612  Sum_probs=89.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      ||+|+|..|||||||+++|.+....  ..+....+.++......+......+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  23333445566566677777777899999999999988888889999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCC
Q 028237           86 YDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCD  122 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D  122 (211)
                      ||++++.+++.+..++..+....  ..+.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999988766544443322  34699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=9.7e-22  Score=165.46  Aligned_cols=153  Identities=22%  Similarity=0.217  Sum_probs=113.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ...+|+++|+.++|||||+++|.+..+.....+..+.+.....+.+.+. ..+.+|||||++.|..++..++..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4578999999999999999999998877666555555555555555432 278999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEecCCCCC
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG---------LIFMEASAKTAQN  155 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~g~~  155 (211)
                      |+|+++....+.... +...   ...+.|+++++||+|+.+.   ..+.+.......+         .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~e~-i~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIEA-ISHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHHH-HHHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            999987322111111 1222   2247899999999998542   3344444333322         4699999999999


Q ss_pred             HHHHHHHHHH
Q 028237          156 VEEAFIKTAA  165 (211)
Q Consensus       156 v~~~~~~l~~  165 (211)
                      +.++|++|..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=3.1e-22  Score=142.71  Aligned_cols=146  Identities=18%  Similarity=0.099  Sum_probs=100.6

Q ss_pred             EEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hhHHhhcCCc
Q 028237           10 IIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------ITRSYYRGAA   80 (211)
Q Consensus        10 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   80 (211)
                      +++|.+|+|||||+++|.+.... ....+..+.+.........+  ..+.+|||||+..+..        ....+++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987532 12222223333333444444  6899999999877543        3345678899


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~  159 (211)
                      ++++|+|..+..+.... .+...+..   .+.|+++++||+|+.+....     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875543332 12222222   26999999999998653221     223334555 6899999999999999


Q ss_pred             HHHHHHH
Q 028237          160 FIKTAAT  166 (211)
Q Consensus       160 ~~~l~~~  166 (211)
                      |++|++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.4e-21  Score=160.27  Aligned_cols=163  Identities=14%  Similarity=0.117  Sum_probs=115.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhh---HHhhcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSIT---RSYYRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~   78 (211)
                      ...|+|+|.+|||||||+++|++........+.++.....-.+.+.+  .++.+||+||...    ...+.   ..++++
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46899999999999999999998766544444445555444555554  6899999999632    11222   234677


Q ss_pred             CcEEEEEEECCCH----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028237           79 AAGALLVYDITRR----ETFNHLASWLEDARQHA-----------NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL  143 (211)
Q Consensus        79 ~d~~i~v~d~~~~----~~~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (211)
                      +|++|+|+|+++.    +.+..+..+..++..+.           ..++|++||+||+|+.+.... .+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            9999999999753    34455555555554443           137899999999998643221 2233334455678


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          144 IFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       144 ~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      +++++||+++.|+++++.+|.+.+....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999887654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=7.9e-22  Score=163.68  Aligned_cols=162  Identities=20%  Similarity=0.148  Sum_probs=113.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhhh-
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSIT-   72 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~-   72 (211)
                      ..++|+|+|.+|+|||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||.          +.+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999988653 34444445555555566666  45679999995          2333332 


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHH-HHHHcCCcEEEEe
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQ-FAKEHGLIFMEAS  149 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s  149 (211)
                      ..+++.+|++|+|+|+++..+...+. ++..+..   .+.|+++|+||+|+.+....  ...++.. +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            34678999999999999887766653 3333332   47899999999999642211  0111221 2222346899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 028237          150 AKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      |++|.|++++|..+.+.+.+...
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999987765543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=8.6e-22  Score=162.02  Aligned_cols=148  Identities=24%  Similarity=0.236  Sum_probs=111.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh--------hHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--------TRSYY   76 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   76 (211)
                      .++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||.+.+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999987642 33444445566566666665  57899999998654332        23468


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      +.+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.+.....        ...+.+++++||++|.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            89999999999998877665433332      3478999999999996432211        334567999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIYK  169 (211)
Q Consensus       157 ~~~~~~l~~~~~~  169 (211)
                      ++++++|.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=1.8e-21  Score=164.61  Aligned_cols=156  Identities=22%  Similarity=0.258  Sum_probs=115.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCC------CceeEEEEEEEEE-----CCEEEEEEEEeCCCcch
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMITI-----DNKPIKLQIWDTAGQES   67 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~   67 (211)
                      .-+|+|+|+.++|||||+++|+...       +...+..      ..+.++....+.+     ++..+.+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998742       1122211      2255555444333     45568999999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---c
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL---I  144 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  144 (211)
                      |...+..+++.+|++|+|+|+++..+.+....|+..+.    .+.|+++++||+|+.+..  ......++.+..++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998666555555543332    378999999999985422  12223455555565   3


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 028237          145 FMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ++++||++|.|+.++|++|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999988765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=2.4e-21  Score=157.81  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=114.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--hhhhH------HhhcC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--RSITR------SYYRG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~   78 (211)
                      ++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+ ...+.+|||+|....  ..++.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            5899999999999999999998776554444445555555566654 236789999997332  22222      34688


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~  157 (211)
                      +|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+.+...   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999998877776665555554445799999999999854211   1111  1123455 5889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      +++++|.+.+...
T Consensus       352 eL~e~I~~~l~~~  364 (426)
T PRK11058        352 LLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999988554

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.6e-22  Score=140.37  Aligned_cols=162  Identities=25%  Similarity=0.343  Sum_probs=123.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhC-------CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDK-------RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY   75 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   75 (211)
                      ....+.|+|+|..++|||||+..+...       -......++++.+.....+    ....+.+||..|++..+++|..|
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHH
Confidence            344578999999999999999886432       1123344455555543333    24688999999999999999999


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHH---HHH---cCCcEEEE
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQF---AKE---HGLIFMEA  148 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~  148 (211)
                      |..+|++|+++|+++++.++.....++.+..+ .-.+.|+++.+||.|+.+.  +..+++...   ++.   ...++.++
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccc
Confidence            99999999999999999988877766555433 3379999999999999663  333443332   222   34679999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ||.+|+||.+...|++..+..+
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999988776

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=8.3e-22  Score=146.61  Aligned_cols=159  Identities=19%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCCceeEEEEEEEEEC---------------------------C----
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMITID---------------------------N----   52 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   52 (211)
                      ++|+++|+.|+|||||+..+.+...   ..+.....+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   11111111111111111110                           0    


Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--C
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--S  130 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~  130 (211)
                      ...++.+||+||++.+...+...+..+|++++|+|+.++.........+..+...  ...|+++++||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1268999999999998888888888999999999998742111112222222222  13479999999998642111  1


Q ss_pred             HHHHHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          131 TEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       131 ~~~~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .+.++.+.+..   +++++++||++|.|++++|++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23333444332   57799999999999999999987643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=3.3e-21  Score=142.65  Aligned_cols=158  Identities=18%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhhhH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSITR   73 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~   73 (211)
                      +..++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..   ...+.+||+||.          +.+..+..
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            45689999999999999999999987655555555555544433333   368999999994          34444555


Q ss_pred             HhhcCC---cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCcEEEE
Q 028237           74 SYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEA  148 (211)
Q Consensus        74 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~  148 (211)
                      .++...   +++++|+|..++.+.... .+...+..   .+.|+++++||+|+.+..+.  ..+.+..+......+++++
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  174 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF  174 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            565544   578888998775443221 11222221   37899999999998543211  1222444444446789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ||+++.|++++++.|.+.+.
T Consensus       175 Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        175 SSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EcCCCCCHHHHHHHHHHHhc
Confidence            99999999999999887653

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=4.9e-21  Score=154.38  Aligned_cols=163  Identities=15%  Similarity=0.091  Sum_probs=116.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-------hhhhHHhhcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RSITRSYYRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   78 (211)
                      ...|+|+|.+|||||||+|+|++........+.++.....-.+.+.+ ...+.++|+||...-       .......++.
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            44799999999999999999998766544444444444444454443 346899999996431       1112234788


Q ss_pred             CcEEEEEEECC---CHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecC
Q 028237           79 AAGALLVYDIT---RRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAK  151 (211)
Q Consensus        79 ~d~~i~v~d~~---~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~  151 (211)
                      +|++++|+|+.   +.+.++....|+.++..+..  .++|+++|+||+|+.+.... .+.+..+.+..+  .+++.+||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999988   45566777777777766543  47899999999998643222 334445555544  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++.|++++++.|.+.+.+.
T Consensus       317 tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhC
Confidence            9999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=2e-21  Score=141.89  Aligned_cols=148  Identities=16%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----------hhhhhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   72 (211)
                      .+..++|+|+|.+|+|||||+|+|.+..+...+.++.+.+.....+..++   .+.+||+||..          .+..+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            46678999999999999999999998764444444555555444444443   68999999952          344444


Q ss_pred             HHhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--CcE
Q 028237           73 RSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHG--LIF  145 (211)
Q Consensus        73 ~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~  145 (211)
                      ..|++.   ++++++|+|..++.+.... .++..+..   .+.|+++++||+|+.+...  ...++++......+  +++
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            556553   5799999999875544433 22333322   3789999999999864321  12344555555544  479


Q ss_pred             EEEecCCCCCHH
Q 028237          146 MEASAKTAQNVE  157 (211)
Q Consensus       146 ~~~sa~~g~~v~  157 (211)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04163 Era Era subfamily

Probab=99.88  E-value=4.5e-21  Score=137.66  Aligned_cols=156  Identities=19%  Similarity=0.123  Sum_probs=104.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYR   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   77 (211)
                      ..+|+++|.+|+|||||+++|.+.................. .........+.+||+||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            47899999999999999999998765433322212222122 2233335789999999965432        23445688


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNV  156 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v  156 (211)
                      .+|++++|+|+.++.+. ....+...+...   +.|+++++||+|+........+....+....+ .+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999987221 112222333322   68999999999986432222333344444443 67999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          157 EEAFIKTAAT  166 (211)
Q Consensus       157 ~~~~~~l~~~  166 (211)
                      ++++++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=4.2e-21  Score=158.16  Aligned_cols=160  Identities=22%  Similarity=0.098  Sum_probs=109.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-----------h
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-----------T   72 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   72 (211)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+..++  ..+.+|||||...+...           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999987543 22333333333334444444  47899999997543221           2


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-E----HGLIFME  147 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  147 (211)
                      ..+++.+|++|+|+|+.++.+..... ++..+..   .+.|+++++||+|+.+ .....++...... .    .++++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEE
Confidence            34688999999999999876655432 2233322   3789999999999862 1111222222222 1    2478999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      +||++|.|+.++|+++.+.+.+..
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999998776543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=4.4e-21  Score=162.05  Aligned_cols=155  Identities=21%  Similarity=0.230  Sum_probs=116.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +.|+++|+.++|||||+++|++.   .++.+..++++.+.....+.+++  ..+.+||+||++.|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46999999999999999999963   34445555666666666666655  78999999999999888888999999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC--CHHHHHHHHHHc----CCcEEEEecCCC
Q 028237           84 LVYDITR---RETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV--STEEGEQFAKEH----GLIFMEASAKTA  153 (211)
Q Consensus        84 ~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~g  153 (211)
                      +|+|+++   +++.+.+.    .+..   .+.| ++|++||+|+.+....  ..+++..+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999997   44444432    2222   2677 9999999999653321  123455555544    478999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATIYKK  170 (211)
Q Consensus       154 ~~v~~~~~~l~~~~~~~  170 (211)
                      .|+++++..|.+.+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999987765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=6.1e-21  Score=138.03  Aligned_cols=155  Identities=22%  Similarity=0.138  Sum_probs=103.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----------hh-hhH
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----------RS-ITR   73 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~~~   73 (211)
                      .++|+++|.+|+|||||+++|++..... ...+..+.......+..++  ..+.+||+||....          .. ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999999876432 2223323333333344444  45789999996432          11 122


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHHHc----CCcEEEE
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-FAKEH----GLIFMEA  148 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~  148 (211)
                      .++..+|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+.+......+.... +.+..    +.+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356789999999999987664443 22222222   378999999999986543222333222 22332    3679999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~  166 (211)
                      ||+++.|+.++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=1.1e-20  Score=155.81  Aligned_cols=173  Identities=21%  Similarity=0.174  Sum_probs=117.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHhhc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYYR   77 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   77 (211)
                      ++|+|+|.+|+|||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||+..        .......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987653 23333344555555566665  7899999999876        2333456788


Q ss_pred             CCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCC
Q 028237           78 GAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQ  154 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~  154 (211)
                      .+|++|+|+|+.+..+..  .+..|+.   .   .+.|+++++||+|..+.    ......+ ...++. ++++||.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998754332  2233332   2   27899999999996431    1222233 345654 8999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCC
Q 028237          155 NVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSG  197 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (211)
                      |+.++|+.+.+.....     .........++++-.|.|+..+
T Consensus       149 gv~~l~~~I~~~~~~~-----~~~~~~~~~~~v~ivG~~n~GK  186 (435)
T PRK00093        149 GIGDLLDAILEELPEE-----EEEDEEDEPIKIAIIGRPNVGK  186 (435)
T ss_pred             CHHHHHHHHHhhCCcc-----ccccccccceEEEEECCCCCCH
Confidence            9999999998733211     1111133467787777775543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=7.4e-21  Score=163.81  Aligned_cols=150  Identities=22%  Similarity=0.255  Sum_probs=112.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ....|+|+|+.++|||||+++|....+.....+..+.+.....+.+.+  ..+.||||||++.|..++..++..+|++|+
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            467899999999999999999998777665555444444444455544  689999999999999999999999999999


Q ss_pred             EEECCCH---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-------HHHHcC--CcEEEEecCC
Q 028237           85 VYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-------FAKEHG--LIFMEASAKT  152 (211)
Q Consensus        85 v~d~~~~---~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~~  152 (211)
                      |||+++.   ++.+.+    .   .....+.|++|++||+|+.+.   +.+.+..       ++..++  ++++++||++
T Consensus       367 VVdAddGv~~qT~e~i----~---~a~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        367 VVAADDGVMPQTIEAI----N---HAKAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEECCCCCCHhHHHHH----H---HHHhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            9999873   333321    2   222247999999999998642   2222221       223333  6799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAAT  166 (211)
Q Consensus       153 g~~v~~~~~~l~~~  166 (211)
                      |.|++++|++|...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999998764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=5.4e-21  Score=163.35  Aligned_cols=156  Identities=20%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE--EEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....|+|+|+.++|||||+++|....+.....+..+.+..  ...+...+....+.||||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4579999999999999999999988776554443333322  22333344568999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHH-------HHHcC--CcEEEEecCCC
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF-------AKEHG--LIFMEASAKTA  153 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa~~g  153 (211)
                      |+|+|+++....+.... +..+   ...+.|++|++||+|+.+.   ..+.+...       ...++  ++++++||++|
T Consensus       323 ILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        323 ILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            99999987422221111 1222   2247899999999998652   22222222       22233  68999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATI  167 (211)
Q Consensus       154 ~~v~~~~~~l~~~~  167 (211)
                      .|++++|++|....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=6.8e-21  Score=156.91  Aligned_cols=173  Identities=20%  Similarity=0.154  Sum_probs=116.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCc--------chhhhhhHHhhcC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--------ESFRSITRSYYRG   78 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   78 (211)
                      +|+|+|.+|+|||||+|+|++..... ...+..+.+.....+.+++  ..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876432 2333334444445555555  57999999996        3344556677899


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~  157 (211)
                      +|++++|+|..+..+... ..+...+..   .++|+++|+||+|+.+....    ... ....++ +++++||.+|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999987543322 122233332   27899999999998653321    122 234566 69999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCC
Q 028237          158 EAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGP  195 (211)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (211)
                      ++++.+.+.+.+..    .........++++-.|.|+.
T Consensus       150 ~ll~~i~~~l~~~~----~~~~~~~~~~~v~ivG~~~~  183 (429)
T TIGR03594       150 DLLDAILELLPEEE----EEEEEEDGPIKIAIIGRPNV  183 (429)
T ss_pred             HHHHHHHHhcCccc----ccccccCCceEEEEECCCCC
Confidence            99999887764321    11122233456666665544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.86  E-value=1.4e-20  Score=147.55  Aligned_cols=158  Identities=20%  Similarity=0.158  Sum_probs=106.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYR   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   77 (211)
                      .-.|+|+|.+|||||||+|+|++...........++......+... ...++.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4569999999999999999999887654333332333322223222 23789999999964322        23344678


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNV  156 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v  156 (211)
                      .+|++++|+|+++..+. ........+.   ..+.|+++|+||+|+.............+.+..+ .+++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            89999999999883221 1122222232   2368999999999986322222334445554444 56999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIY  168 (211)
Q Consensus       157 ~~~~~~l~~~~~  168 (211)
                      ++++++|.+.+.
T Consensus       160 ~~L~~~L~~~l~  171 (292)
T PRK00089        160 DELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHhCC
Confidence            999999988764

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.86  E-value=3.3e-21  Score=131.50  Aligned_cols=164  Identities=24%  Similarity=0.486  Sum_probs=142.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||.++|.+..|||||+-.+.++.+.+.+..+.|.++-.+++.+++.+..+.|||.+|++++..+......++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            47899999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----CC-CCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH----RR-AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~----~~-~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      +||++.+.++..+..|+++-+......+| |+|++|.|.--    +. .....+.+.+++-.+++++.+|+....|+..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            99999999999999999987666554455 56799999621    11 11234467788888999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          160 FIKTAATIYK  169 (211)
Q Consensus       160 ~~~l~~~~~~  169 (211)
                      |..+..++..
T Consensus       178 FK~vlAklFn  187 (205)
T KOG1673|consen  178 FKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHhC
Confidence            9998887764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=2.1e-20  Score=158.24  Aligned_cols=162  Identities=22%  Similarity=0.249  Sum_probs=115.5

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCC--CC-----CC------CCCceeEEEEEEEEE-----CCEEEEEEEEeC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP-----VH------DLTIGVEFGARMITI-----DNKPIKLQIWDT   62 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~   62 (211)
                      |..+..-+|+|+|+.++|||||+.+|+...-  ..     ..      ....+.++....+.+     ++..+.+++|||
T Consensus         2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT   81 (600)
T PRK05433          2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT   81 (600)
T ss_pred             CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence            3455667999999999999999999986321  11     00      112244444333332     455789999999


Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG  142 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (211)
                      ||+..|...+..+++.+|++|+|+|+++....+....|....    ..+.|+++++||+|+.+..  .......+.+..+
T Consensus        82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg  155 (600)
T PRK05433         82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIG  155 (600)
T ss_pred             CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhC
Confidence            999999999999999999999999998865544444443322    2378999999999985422  1222334444455


Q ss_pred             Cc---EEEEecCCCCCHHHHHHHHHHHHH
Q 028237          143 LI---FMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       143 ~~---~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ++   ++++||++|.|+.+++++|.+.+.
T Consensus       156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        156 IDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            54   899999999999999999987653

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.86  E-value=9.5e-24  Score=148.05  Aligned_cols=170  Identities=35%  Similarity=0.622  Sum_probs=148.2

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE-EEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      +.+..++++|+|..|+|||+++.++....++..+..+++.++...+...+++ .+++++||..|+++|..+...|++.++
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            3567889999999999999999999999999999999999998888888654 478899999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCc-EEEEecCCCC
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEHGLI-FMEASAKTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~sa~~g~  154 (211)
                      +.++|||+++..+++....|.+.+.....    ...|++++.||+|....... ...+...+.+++|+. .+++|++.+.
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999998854432    46788999999998543222 246678889999875 9999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYKKI  171 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~~  171 (211)
                      ++.|+.+.|++++.-.-
T Consensus       181 ni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVND  197 (229)
T ss_pred             ChhHHHHHHHHHHHhhc
Confidence            99999999999988764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=2.1e-20  Score=158.13  Aligned_cols=146  Identities=19%  Similarity=0.197  Sum_probs=110.2

Q ss_pred             cCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh------hHHhh--cCCcEEEE
Q 028237           13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL   84 (211)
Q Consensus        13 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   84 (211)
                      |.+|+|||||+|+|++..+.....+..+.+.....+.+++  .++++||+||+.++...      ...++  +.+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999887666666666666555666655  56899999998876542      34443  37899999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |+|.++.+..   ..+..++.   +.+.|+++++||+|+.++.... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999874421   12222222   2479999999999986544443 356788888899999999999999999999998


Q ss_pred             HHH
Q 028237          165 ATI  167 (211)
Q Consensus       165 ~~~  167 (211)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.3e-21  Score=135.76  Aligned_cols=162  Identities=29%  Similarity=0.541  Sum_probs=144.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++++++|..|.||||++++++.+.|...+.++.+.........-+....++..|||.|++.+..+...|+-...+.|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            47899999999999999999999999999999999999988877666557999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      .||++..-++.++..|...+.+... ++|+++++||.|..+..  .......+.+..++.+++.||+.+-|....|.|+.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence            9999999999999999999877665 79999999999986543  23444566677789999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +++..
T Consensus       166 rKl~G  170 (216)
T KOG0096|consen  166 RKLTG  170 (216)
T ss_pred             hhhcC
Confidence            97754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.85  E-value=1.2e-20  Score=126.89  Aligned_cols=156  Identities=21%  Similarity=0.316  Sum_probs=118.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+++|..++|||||+..|...... ...++  ..+..+.+.+.+ ++++++||.+|+...+..|..||.++|.+|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT--~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPT--NGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hcccc--CCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            45799999999999999999999865432 23333  344445555555 789999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQ-----FAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      +|+|.+|...++++...+-++.. ..-...|+.+..||.|+.-.  ...+++..     ..+..-+.+.++||+.++|+.
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            99999999888888776655543 33368999999999998542  22222211     112223568899999999999


Q ss_pred             HHHHHHHH
Q 028237          158 EAFIKTAA  165 (211)
Q Consensus       158 ~~~~~l~~  165 (211)
                      ...+|+..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            99998765

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=6e-20  Score=139.09  Aligned_cols=161  Identities=20%  Similarity=0.131  Sum_probs=115.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYY   76 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~   76 (211)
                      ..--|+|+|.||+|||||+|++.+......+...+++......+...+ +.++.++||||...-.        ......+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            445799999999999999999999999887777777777777776665 7899999999953222        1233447


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQN  155 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~  155 (211)
                      ..+|+++||+|++++....+ ...++.+..   .+.|+++++||+|..............+..... ..++++||++|.|
T Consensus        84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          84 KDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             ccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence            88999999999998543211 222333333   368999999999986543322333333333333 3599999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKK  170 (211)
Q Consensus       156 v~~~~~~l~~~~~~~  170 (211)
                      ++.+.+.+...+.+.
T Consensus       160 ~~~L~~~i~~~Lpeg  174 (298)
T COG1159         160 VDTLLEIIKEYLPEG  174 (298)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999998887765543

>cd00880 Era_like Era (E

Probab=99.85  E-value=2.6e-20  Score=132.50  Aligned_cols=151  Identities=20%  Similarity=0.137  Sum_probs=104.3

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhcCCcEE
Q 028237           11 IIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRGAAGA   82 (211)
Q Consensus        11 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~   82 (211)
                      |+|+.|+|||||++++.+.... .......+............ ...+.+||+||.....       .....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987555 33333333333333333322 5689999999976553       3445578999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE---EGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ++|+|..+........ +.....   ..+.|+++++||+|+.........   .........+++++++|+.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877655544 222222   248999999999998653322111   112233334678999999999999999


Q ss_pred             HHHHHHH
Q 028237          160 FIKTAAT  166 (211)
Q Consensus       160 ~~~l~~~  166 (211)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=1.3e-20  Score=138.66  Aligned_cols=159  Identities=23%  Similarity=0.211  Sum_probs=107.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      ..++|+++|+.++|||||+++|+........                  ....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3679999999999999999999865422111                  1111222222223212456899999999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHH-HHHHHc---
Q 028237           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGE-QFAKEH---  141 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~---  141 (211)
                      .|.......++.+|++|+|+|+.+..... ....+..+...   +.|++|++||+|+...+. ...+++. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            99888888899999999999998653322 22333333333   789999999999862110 0112222 333333   


Q ss_pred             ---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          142 ---GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       142 ---~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                         .++++++||.+|.|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               25799999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=6.6e-20  Score=158.79  Aligned_cols=154  Identities=21%  Similarity=0.151  Sum_probs=104.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   75 (211)
                      ...+|+|+|.+|+|||||+|+|++..... ...+  |.+..............+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p--GvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTP--GVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCC--CeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            34689999999999999999999876432 2233  3333333333222246789999999653        23445567


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~  154 (211)
                      ++.+|++|+|+|..+...... ..|...+..   .+.|+++|+||+|+.+..    .....+.. .+. ..+++||++|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence            899999999999976322111 233444433   389999999999985421    12222222 233 36789999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYK  169 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~  169 (211)
                      |+.++|++|++.+.+
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999988744

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.3e-21  Score=130.65  Aligned_cols=160  Identities=22%  Similarity=0.323  Sum_probs=119.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+++|..|+||||++.++.-... ....|+++.+.    .++..+.+++.+||..|+-.....|+.||.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            4678999999999999999888765544 33344445554    333346799999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHH-HHHhcCCCCcEEEEEecCCCCCCCCCCHHHH-----HHHHHHcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEG-----EQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~-l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      +|+|..|.+..-.....+-. +.+..-.+..++|++||.|....  ....++     ..-.++.-+.++++||.+|+|++
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            99999998876665554333 33322246778999999998542  222222     22233334679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      +.++||.+.+.++
T Consensus       169 ~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  169 PAMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=1.4e-19  Score=156.58  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=114.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh----------hhHHh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS----------ITRSY   75 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~   75 (211)
                      .++|+++|.+|||||||+|+|++........+  |.+...+...+...+.++.+||+||..++..          ....+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            37899999999999999999998876544443  5555555555555668899999999876532          12334


Q ss_pred             h--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           76 Y--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        76 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      +  ..+|++++|+|.++.+...   .+..++.+   .+.|+++++||+|+.+.+.. ..+.+++.+..+++++++|+.+|
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            3  4789999999998855422   23333333   37999999999998654433 45567888889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATI  167 (211)
Q Consensus       154 ~~v~~~~~~l~~~~  167 (211)
                      .|++++.+.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=144.63  Aligned_cols=176  Identities=20%  Similarity=0.135  Sum_probs=119.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--h-------hhHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--S-------ITRSYY   76 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-------~~~~~~   76 (211)
                      ..|+|+|.||+|||||+|+|++.+.... ..+.++.+.......+.+  ..|.++||+|.+...  .       .....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            5799999999999999999999887643 334444444444455554  669999999976332  1       233457


Q ss_pred             cCCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCC
Q 028237           77 RGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTA  153 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g  153 (211)
                      ..+|++|||+|....-+  -+.+..++   . .  .++|+++|+||+|-..     .+....-.-.+|. ..+.+||.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~--~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKIL---R-R--SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-h--cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence            88999999999876332  22233332   2 1  2799999999999642     2222222334454 4899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCCC
Q 028237          154 QNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGG  198 (211)
Q Consensus       154 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (211)
                      .|+.++++.+++.+.   .+...+...+...++++-.|.|.-.++
T Consensus       151 ~Gi~dLld~v~~~l~---~~e~~~~~~~~~~ikiaiiGrPNvGKS  192 (444)
T COG1160         151 RGIGDLLDAVLELLP---PDEEEEEEEETDPIKIAIIGRPNVGKS  192 (444)
T ss_pred             cCHHHHHHHHHhhcC---CcccccccccCCceEEEEEeCCCCCch
Confidence            999999999888764   111112222256789999998865544

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=2.1e-19  Score=151.22  Aligned_cols=157  Identities=21%  Similarity=0.182  Sum_probs=105.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC----------------CEEEEEEEEeCCCcchhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID----------------NKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~   69 (211)
                      ..-|+++|++++|||||+++|.+..+........+.+.....+..+                .....+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3469999999999999999999887654433322221111111111                011238899999999999


Q ss_pred             hhhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC------------CHHHH
Q 028237           70 SITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV------------STEEG  134 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~  134 (211)
                      .++..+++.+|++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+.+....            ....+
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   44444332    2221   37899999999998531100            00000


Q ss_pred             ------------HHHHH------------Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          135 ------------EQFAK------------EH--GLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       135 ------------~~~~~------------~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                                  ..+.+            .+  .++++++||++|+|+++++.+|......
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                        01111            11  3579999999999999999988765554

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=1.4e-19  Score=149.43  Aligned_cols=158  Identities=23%  Similarity=0.137  Sum_probs=106.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------hh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----------IT   72 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~   72 (211)
                      ..++|+|+|.+|+|||||+|+|++... .....+..+.+.....+...+  ..+.+|||||......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            468999999999999999999997653 233333333333333333443  6688999999643211           12


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH-HHHH----HcCCcEEE
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE-QFAK----EHGLIFME  147 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~  147 (211)
                      ..+++.+|++|+|+|+.++.+..... +...+..   .++|+++++||+|+.+...  ..+.. .+..    ...+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            24678999999999999876655432 2233322   3789999999999863211  12221 1111    22478999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      +||++|.|+.++|+.+.+.+.+.
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988876554

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.83  E-value=4.4e-20  Score=151.65  Aligned_cols=159  Identities=19%  Similarity=0.123  Sum_probs=106.9

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-----------------------------CCCCceeEEEEEEEEEC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITID   51 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   51 (211)
                      |+....++|+++|++++|||||+++|+...-...                             .....|++.......+.
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~   80 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE   80 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence            6778899999999999999999999984321110                             01122444444455555


Q ss_pred             CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhH-HHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--
Q 028237           52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--  128 (211)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--  128 (211)
                      ...+++.+|||||++.|.......+..+|++|+|+|++++... .....++..+...  ...|+++++||+|+.+...  
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHH
Confidence            5668999999999988876556667899999999999873111 1111222222222  1246899999999864221  


Q ss_pred             --CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 028237          129 --VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus       129 --~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~  161 (211)
                        ...+++..+.+..+     ++++++||++|.|+.+++.
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence              11244555665555     4699999999999998653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.3e-18  Score=122.60  Aligned_cols=156  Identities=24%  Similarity=0.351  Sum_probs=119.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------CCCCC----CceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PVHDL----TIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      .-+..||+|.|+.++||||+++.+......        .....    |+..++.  ...+.+ +..+.+++||||++|..
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHHH
Confidence            445789999999999999999999876641        11111    2222222  222222 46889999999999999


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEE
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEA  148 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~  148 (211)
                      +|..+.+.+.++|+++|.+++..+ +....+..+....  ..|++|..||.|+.+  ....++++++.+..  .+++++.
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeee
Confidence            999999999999999999998887 4444444443332  299999999999965  46677777777665  7899999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~  166 (211)
                      +|.+++++.+.+..+..+
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999887764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=1.2e-18  Score=132.04  Aligned_cols=151  Identities=23%  Similarity=0.199  Sum_probs=103.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhcCCc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRGAA   80 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   80 (211)
                      +|+|+|++|+|||||+++|++........+..+.+.....+.+.+  ..+++||+||.....       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998765433333334444444455554  689999999974322       22345789999


Q ss_pred             EEEEEEECCCHh-hHHHHHHHHH-----------------------------------------HHHHhc----------
Q 028237           81 GALLVYDITRRE-TFNHLASWLE-----------------------------------------DARQHA----------  108 (211)
Q Consensus        81 ~~i~v~d~~~~~-~~~~~~~~~~-----------------------------------------~l~~~~----------  108 (211)
                      ++++|+|++++. ..+.+...+.                                         .+..+.          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998755 2322222221                                         111110          


Q ss_pred             -----------C---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          109 -----------N---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       109 -----------~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                                 .   .-.|+++|+||+|+.     ..++...++..  .+++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0   236899999999984     34455555443  4689999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=7.3e-19  Score=152.34  Aligned_cols=159  Identities=23%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhh-h
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSI-T   72 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~   72 (211)
                      ..++|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+++  ..+.+|||||...          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999988643 23334335555455556665  3567999999531          2222 2


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-E----HGLIFME  147 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  147 (211)
                      ..+++.+|++++|+|+++..+...... +..+..   .++|+++|+||+|+.+...  .+..+.... .    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            344789999999999998777665543 333322   3789999999999964221  222222222 1    1346899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      +||++|.|+.++|+.+.+.+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999998877643

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.82  E-value=2.3e-19  Score=133.42  Aligned_cols=117  Identities=17%  Similarity=0.329  Sum_probs=88.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCC-cEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY   86 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~   86 (211)
                      +|+++|++|||||||+++|....+......+ ............+....+.+||+||+..+...+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988776554332 2222221121123457899999999999999899999998 9999999


Q ss_pred             ECCCH-hhHHHHHHHHHHHHHh---cCCCCcEEEEEecCCCCC
Q 028237           87 DITRR-ETFNHLASWLEDARQH---ANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        87 d~~~~-~~~~~~~~~~~~l~~~---~~~~~p~ivv~nK~D~~~  125 (211)
                      |..+. .++..+..++..+...   ...+.|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6677766665444322   225899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=2.2e-19  Score=151.64  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=111.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC--CCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   73 (211)
                      +|+|+|+.++|||||+++|+..  .+....            ....++++......+.+.++++.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  221111            11235566655555555678999999999999999999


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHH-------HcCCcE
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAK-------EHGLIF  145 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~  145 (211)
                      .+++.+|++++|+|+.+.. ......++..+..   .+.|+++++||+|+.+.+.. ..+++..+..       ...+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998632 2333445554443   37899999999998653211 1233333332       235789


Q ss_pred             EEEecCCCC----------CHHHHHHHHHHHH
Q 028237          146 MEASAKTAQ----------NVEEAFIKTAATI  167 (211)
Q Consensus       146 ~~~sa~~g~----------~v~~~~~~l~~~~  167 (211)
                      +.+||++|.          |+..+|+.+++.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999995          7888887766644

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=4.4e-19  Score=127.62  Aligned_cols=150  Identities=19%  Similarity=0.259  Sum_probs=100.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhhhHHhhc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRSYYR   77 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   77 (211)
                      .|+++|.+|+|||||++.+.+........++.+.+.....+..+.   .+.+||+||...          +......|+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999997666555555555555544444443   889999999533          3444444544


Q ss_pred             ---CCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHH--HcCCcEEEE
Q 028237           78 ---GAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAK--EHGLIFMEA  148 (211)
Q Consensus        78 ---~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  148 (211)
                         +.+++++++|..+..+  ...+..|+..   .   +.|+++++||+|+......  .........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4568899999886532  2222333322   2   6899999999998542211  1122222222  234579999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=2e-19  Score=147.81  Aligned_cols=156  Identities=19%  Similarity=0.133  Sum_probs=104.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC--CCCC---------------------------CCCCCceeEEEEEEEEECCEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK--RFQP---------------------------VHDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++|+++|+.++|||||+.+|+..  ....                           ......+.+.......+....
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            45789999999999999999999852  1110                           000112344444444455556


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC----
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRA----  128 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----  128 (211)
                      +.+.+||+||++.|......++..+|++|+|+|+++.++...  ...++... ... ...|++|++||+|+.+...    
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHHH
Confidence            899999999999887766667889999999999998743211  11111112 222 1357999999999964221    


Q ss_pred             CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 028237          129 VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus       129 ~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~  161 (211)
                      ....++..+++..+     ++++++||++|.|+.+++.
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            11345566676665     5699999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=1.4e-18  Score=146.75  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=114.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC--CCCCC------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..-+|+|+|+.++|||||+++|+..  .+...            ...+.+.++......+....+++++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            4579999999999999999999873  23221            123456777777777777789999999999999999


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcC
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAK-------EHG  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~  142 (211)
                      .+..+++.+|++|+|+|+.+....+ ...++..+..   .+.|.++++||+|..+.+. ...+++..+..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            9999999999999999998743222 2222333222   3789999999999865322 11233333332       235


Q ss_pred             CcEEEEecCCCC----------CHHHHHHHHHHHHHHHHhcCc
Q 028237          143 LIFMEASAKTAQ----------NVEEAFIKTAATIYKKIQDGV  175 (211)
Q Consensus       143 ~~~~~~sa~~g~----------~v~~~~~~l~~~~~~~~~~~~  175 (211)
                      +|++.+||.+|.          ++..+++.    +.+..+.+.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~----Ii~~iP~P~  198 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQA----IVDHVPAPD  198 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHH----HHHhCCCCC
Confidence            789999999998          45666654    444455443

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=2.3e-19  Score=133.98  Aligned_cols=149  Identities=19%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------------------------CCCceeEEEEEEEEECCEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVEFGARMITIDNKPIKLQ   58 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   58 (211)
                      ||+|+|++|+|||||+++|+...-....                             ....+.+.......+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999754321110                             00013333333344444457889


Q ss_pred             EEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC----CHHHH
Q 028237           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV----STEEG  134 (211)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~  134 (211)
                      +|||||+..|......+++.+|++|+|+|+++...... ......+...  ...++++++||+|+.+....    ...++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999999887667777899999999999987532221 1222222222  12357788999998643211    12334


Q ss_pred             HHHHHHcCC---cEEEEecCCCCCHHHH
Q 028237          135 EQFAKEHGL---IFMEASAKTAQNVEEA  159 (211)
Q Consensus       135 ~~~~~~~~~---~~~~~sa~~g~~v~~~  159 (211)
                      ..+....+.   +++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            455555553   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=2.8e-18  Score=145.66  Aligned_cols=152  Identities=18%  Similarity=0.165  Sum_probs=106.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      -|+++|+.++|||||+++|++.   .+..+....++++.....+...+ ...+.+||+||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4899999999999999999963   33444444444444333333322 3468999999999998777788999999999


Q ss_pred             EEECCC---HhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC--CHHHHHHHHHHcC---CcEEEEecCCCCC
Q 028237           85 VYDITR---RETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV--STEEGEQFAKEHG---LIFMEASAKTAQN  155 (211)
Q Consensus        85 v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~g~~  155 (211)
                      |+|+++   +++.+.+    ..+...   +.| ++|++||+|+.+....  ..+++..+....+   ++++++||++|.|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            999987   3333332    222222   456 5799999998643211  1234455555444   6799999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATI  167 (211)
Q Consensus       156 v~~~~~~l~~~~  167 (211)
                      ++++++.|.+..
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999999987644

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=1.4e-18  Score=131.93  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCC--------C--------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV--------H--------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      +|+++|+.|+|||||+++|+...-...        .        ....+.+.......+....+++.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999976421100        0        111233344444444555689999999999999988


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +..+++.+|++|+|+|..+.... ....++..+...   +.|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            99999999999999999875432 334445544433   789999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=9.3e-19  Score=142.75  Aligned_cols=162  Identities=20%  Similarity=0.164  Sum_probs=104.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCCceeEEEEEE--------------EEE----CC------EEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARM--------------ITI----DN------KPIK   56 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~   56 (211)
                      +..++|+++|+.++|||||++.|.+.....   +.....+.......              +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            356899999999999999999997542211   11111111111000              001    11      1468


Q ss_pred             EEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHH
Q 028237           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEG  134 (211)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  134 (211)
                      +.+||+||++.|...+...+..+|++|+|+|+++..........+..+...  ...|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            999999999999888888888999999999998643111122222222222  13578999999998653211  12334


Q ss_pred             HHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          135 EQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       135 ~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ..+....   +++++++||++|.|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4444432   57899999999999999999988754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.80  E-value=5.4e-18  Score=143.19  Aligned_cols=158  Identities=22%  Similarity=0.231  Sum_probs=103.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC------CEE-----E-----EEEEEeCCCcchh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID------NKP-----I-----KLQIWDTAGQESF   68 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~~   68 (211)
                      ....|+++|++++|||||+++|.+...........+.+.........      +..     +     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            45679999999999999999998765443333222212111111110      111     1     2689999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CC----------HH-
Q 028237           69 RSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VS----------TE-  132 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~----------~~-  132 (211)
                      ..++..++..+|++|+|+|+++   +++++.+..    +..   .+.|+++++||+|+.....  ..          .. 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9999999999999999999987   555544332    222   3789999999999842100  00          00 


Q ss_pred             ----------HHHHHHHHc---------------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          133 ----------EGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       133 ----------~~~~~~~~~---------------~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                                ++.......               .++++++||.+|.|+.+++..+.....+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence                      011111111               2569999999999999999988765543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=1.3e-18  Score=141.97  Aligned_cols=163  Identities=18%  Similarity=0.158  Sum_probs=103.2

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCC---CCCCCCceeEEEEEEEEE------------------C--C----EEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMITI------------------D--N----KPI   55 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~~~   55 (211)
                      +...++|+++|+.++|||||+.+|.+.-.+   .+.....+.........+                  +  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            456789999999999999999999653211   111121222211111000                  0  0    136


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHH
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEE  133 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~  133 (211)
                      .+.+||+||++.|..........+|++++|+|+.++.........+..+...  ...|+++++||+|+.+....  ..++
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~  163 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYEQ  163 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence            8999999999988766666677789999999999643111111112222222  12468999999998653221  1233


Q ss_pred             HHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          134 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       134 ~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      +..+.+..   +++++++||++|.|++++++.|.+.+
T Consensus       164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            44444432   47899999999999999999987755

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=2.8e-18  Score=136.85  Aligned_cols=163  Identities=24%  Similarity=0.170  Sum_probs=114.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------hhH
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----------ITR   73 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   73 (211)
                      ..++|+|+|.|++|||||+|+|++.......... |++.......++....++.++||+|...-..           -..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            4699999999999999999999987665443333 5555555555554457888999999542211           233


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEA  148 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~  148 (211)
                      ..+..+|.+++|+|+..+-+.++..- ...+.   +.+.++++++||+|+.+.+....++.+.-...     ..++++.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLRI-AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHHH-HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            45778999999999998776444221 12222   24899999999999877544444444332222     24679999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          149 SAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      ||.+|.++.++|+.+.+.+.....
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~~~~  355 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYECATR  355 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHHhcc
Confidence            999999999999998877665543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.79  E-value=2.6e-18  Score=137.44  Aligned_cols=154  Identities=23%  Similarity=0.220  Sum_probs=112.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhh--------HHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--------RSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   75 (211)
                      ..++++++|.||+|||||+|.|++.... .+..+.++.+.-...+.++|  +.+.+.||+|.++.....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            3689999999999999999999987665 44555556666666667776  788899999987654432        234


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      ++.+|.+++|+|.+.+.+-..... +.    ....++|+++|.||.|+......     ..+....+.+++.+|+++|.|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCccC
Confidence            788999999999998632222111 11    23358999999999999664321     111112234689999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKK  170 (211)
Q Consensus       156 v~~~~~~l~~~~~~~  170 (211)
                      ++.+.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999988887776

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.79  E-value=7e-18  Score=124.38  Aligned_cols=148  Identities=18%  Similarity=0.146  Sum_probs=100.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      .++|+++|+.++|||||+++|++.....              ......+.+.......+.....++.+.||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4799999999999999999998641100              00112245555555556666678999999999988877


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEH-----G  142 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~  142 (211)
                      ....+..+|++++|+|+...-.. .....+..+...   +.| +|+++||+|+....+.   ..+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            77888999999999999864321 122233333332   666 7789999998532211   123345555444     3


Q ss_pred             CcEEEEecCCCCCHH
Q 028237          143 LIFMEASAKTAQNVE  157 (211)
Q Consensus       143 ~~~~~~sa~~g~~v~  157 (211)
                      ++++++||.+|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=3.9e-18  Score=129.67  Aligned_cols=157  Identities=18%  Similarity=0.223  Sum_probs=120.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhHHh---hcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITRSY---YRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~   78 (211)
                      +..|+++|.||+|||||++.+..........+.++.....-++.+++ ...+.+-|.||.-+-    +.+...|   ++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence            34689999999999999999999888777777667777666666665 234899999995322    2233334   567


Q ss_pred             CcEEEEEEECCCH---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCC
Q 028237           79 AAGALLVYDITRR---ETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKT  152 (211)
Q Consensus        79 ~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~  152 (211)
                      ++.++||+|++..   ..++.++.++.++..+..  .+.|.++|+||+|+++.   ....+.++.+...-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence            8899999999988   778888888888766654  68999999999998632   223346667666555 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAAT  166 (211)
Q Consensus       153 g~~v~~~~~~l~~~  166 (211)
                      ++++.++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999988764

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=9.5e-18  Score=120.76  Aligned_cols=158  Identities=17%  Similarity=0.206  Sum_probs=112.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhhH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSITR   73 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   73 (211)
                      +....|+++|.+|+|||||||.|++...-.....++|.|.....+.+++.   +.+.|.||          .+.+..+..
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            34578999999999999999999997755556666688887777888774   77999999          345666777


Q ss_pred             HhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCc--
Q 028237           74 SYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HGLI--  144 (211)
Q Consensus        74 ~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~--  144 (211)
                      .|++.   ..++++++|+..+-...+. ++++.+..   .+.|++|++||+|.....+.. ......++.    ....  
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~  173 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQW  173 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccce
Confidence            77654   3488899998765443221 23333333   389999999999986644332 112222222    2233  


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          145 FMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ++.+|+..+.|++++...|.+.+..
T Consensus       174 ~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         174 VVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEEEecccccCHHHHHHHHHHHhhc
Confidence            8889999999999999988876643

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.79  E-value=4.3e-18  Score=117.35  Aligned_cols=135  Identities=23%  Similarity=0.294  Sum_probs=99.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----cchhhhhhHHhhcCCcEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----QESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i   83 (211)
                      ||+|+|+.|||||||+++|.+...  .+..|+.+.+      .+      .++||||    ...+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------~~------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------YD------NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------cc------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999997644  3444433333      11      2579999    3444544555677999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~  162 (211)
                      +|.|++++.+.-- ..+    ...  -++|+|=|+||+|+.. +..+.+..+++.+..|+. +|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-P~f----a~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGF----ASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-chh----hcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998653110 011    111  2689999999999973 234677788888888985 899999999999999998


Q ss_pred             HH
Q 028237          163 TA  164 (211)
Q Consensus       163 l~  164 (211)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=2.8e-18  Score=129.11  Aligned_cols=148  Identities=20%  Similarity=0.178  Sum_probs=95.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCC-----------------------------CCCCCCceeEEEEEEEEECCEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQ-----------------------------PVHDLTIGVEFGARMITIDNKPIKLQ   58 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (211)
                      +|+++|+.++|||||+.+|+...-.                             .......+++.......+....+++.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999998642110                             00011123444444444544568999


Q ss_pred             EEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh------HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC--CCC
Q 028237           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--AVS  130 (211)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~  130 (211)
                      +||+||+..|...+...++.+|++|+|+|+.+...      .......+......  ...|+++++||+|+....  ...
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            99999998887777777889999999999987421      11112222222221  136899999999986321  111


Q ss_pred             ----HHHHHHHHHHcC-----CcEEEEecCCCCCHH
Q 028237          131 ----TEEGEQFAKEHG-----LIFMEASAKTAQNVE  157 (211)
Q Consensus       131 ----~~~~~~~~~~~~-----~~~~~~sa~~g~~v~  157 (211)
                          .+++..+....+     ++++++||++|.|+.
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                122333344443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG2262 HflX GTPases [General function prediction only]

Probab=99.77  E-value=2.6e-17  Score=129.58  Aligned_cols=169  Identities=20%  Similarity=0.140  Sum_probs=126.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   75 (211)
                      ....|.++|..|+|||||+|.|++........-+.+.+...+.+.+.+ ...+.+.||.|.-         .|.+ +..-
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE  268 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE  268 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence            457899999999999999999998777665555556777777777775 5688899999943         2222 3333


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      ...+|++++|+|+++|...+.+......+........|+|++.||+|+.....     .........-..+.+||++|.|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~g  343 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEG  343 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcC
Confidence            56799999999999998888887777777776556799999999999754322     1222222211588899999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccCCC
Q 028237          156 VEEAFIKTAATIYKKIQDGVFDVSN  180 (211)
Q Consensus       156 v~~~~~~l~~~~~~~~~~~~~~~~~  180 (211)
                      ++.+...|.+.+.............
T Consensus       344 l~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         344 LDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             HHHHHHHHHHHhhhcccceEEEcCc
Confidence            9999999999888776555444433

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=7.6e-18  Score=126.30  Aligned_cols=113  Identities=24%  Similarity=0.306  Sum_probs=80.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------------CCCceeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------DLTIGVEFGARMITI-----DNKPIKLQIWDTAGQ   65 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   65 (211)
                      +|+|+|+.++|||||+++|+........                 ....+.+.....+.+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433220                 011122322222222     345689999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      ..|......++..+|++++|+|+.+..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888899999999999999987654432 233333322   368999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.7e-17  Score=136.87  Aligned_cols=156  Identities=21%  Similarity=0.204  Sum_probs=117.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------hhhhHHhh--cC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------RSITRSYY--RG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~   78 (211)
                      .+|+++|.||+|||||+|+|++.+.....++.++.+...-.....+  .++++.|+||....      ....++|+  ..
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            5699999999999999999999999999888666665555555554  56889999995433      23445554  35


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      +|++|-|+|+++-+.--.+...+.+      -+.|+++++|++|..++.-+ .-+.+++.+..|+|+++++|++|.|+++
T Consensus        82 ~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~  154 (653)
T COG0370          82 PDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEE  154 (653)
T ss_pred             CCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence            7999999999987642222222222      28999999999998554333 3446778888999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          159 AFIKTAATIYKKI  171 (211)
Q Consensus       159 ~~~~l~~~~~~~~  171 (211)
                      +.+.+.+...++.
T Consensus       155 l~~~i~~~~~~~~  167 (653)
T COG0370         155 LKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHhccccc
Confidence            9998887555444

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.76  E-value=2.2e-17  Score=134.40  Aligned_cols=153  Identities=18%  Similarity=0.138  Sum_probs=100.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC------C--------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF------Q--------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ...++|+++|+.++|||||+++|++...      .        .......+++.....+.++....++.+|||||++.|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            4578999999999999999999974310      0        0011113445555556666666789999999999987


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVS---TEEGEQFAKEHG---  142 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~---  142 (211)
                      .........+|++++|+|+.+....+ ....+..+...   +.|.+ +++||+|+.+..+..   .++++.+....+   
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~  165 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            76666778899999999998732211 12222223222   67765 689999986532211   234566666654   


Q ss_pred             --CcEEEEecCCCC-CHHHHH
Q 028237          143 --LIFMEASAKTAQ-NVEEAF  160 (211)
Q Consensus       143 --~~~~~~sa~~g~-~v~~~~  160 (211)
                        ++++++||.+|. +..++.
T Consensus       166 ~~~~ii~vSa~~g~~g~~~~~  186 (394)
T TIGR00485       166 DDTPIIRGSALKALEGDAEWE  186 (394)
T ss_pred             cCccEEECccccccccCCchh
Confidence              689999999885 333343

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.2e-17  Score=133.30  Aligned_cols=146  Identities=18%  Similarity=0.149  Sum_probs=98.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|++.....              ......+.+.......+......+.++|+||++.|..
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence            46899999999999999999998631100              0111235555555556655567889999999998877


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC----
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEHG----  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~----  142 (211)
                      .....+..+|++++|+|+.+..... ....+..+...   ++| +|+++||+|+.+..+..   .+++..+....+    
T Consensus        91 ~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  166 (394)
T PRK12736         91 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD  166 (394)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence            6777788999999999998632211 12222333322   678 67889999986432211   234555555554    


Q ss_pred             -CcEEEEecCCCC
Q 028237          143 -LIFMEASAKTAQ  154 (211)
Q Consensus       143 -~~~~~~sa~~g~  154 (211)
                       ++++++||++|.
T Consensus       167 ~~~ii~vSa~~g~  179 (394)
T PRK12736        167 DIPVIRGSALKAL  179 (394)
T ss_pred             CccEEEeeccccc
Confidence             579999999983

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=5.2e-17  Score=131.71  Aligned_cols=156  Identities=22%  Similarity=0.220  Sum_probs=121.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ..+=|.+||+...|||||+..+-............+....-..+..+. ....+.|+|||||+.|..++.+...-+|.+|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            345689999999999999999999888877777666666666666542 2457889999999999999999999999999


Q ss_pred             EEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEecC
Q 028237           84 LVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG---------LIFMEASAK  151 (211)
Q Consensus        84 ~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~  151 (211)
                      +|++++|   |++.+.       +......+.|++|.+||+|.++   .+...+..-.++++         ..++++||+
T Consensus        84 LVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~  153 (509)
T COG0532          84 LVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK  153 (509)
T ss_pred             EEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence            9999998   444333       3333334999999999999874   34444444444444         349999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~~~~  170 (211)
                      +|+|+++|+..+.-+..-.
T Consensus       154 tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         154 TGEGIDELLELILLLAEVL  172 (509)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999876655544

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.76  E-value=3.8e-17  Score=123.81  Aligned_cols=162  Identities=20%  Similarity=0.180  Sum_probs=112.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch------h------hhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES------F------RSI   71 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~~~   71 (211)
                      .+.++|+|+|.||+|||||.|.+.+.+.........+++...--+...+ ..++.++||||.-.      +      ...
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            4678999999999999999999999999988888877777665555554 67999999999321      1      112


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC-------------CCC---HHHHH
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR-------------AVS---TEEGE  135 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------------~~~---~~~~~  135 (211)
                      ......++|.++.|+|+++....-. ...+..+..+.  +.|-++++||+|..-..             +.+   .+-.+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            3455778999999999996332111 12334445554  78999999999964321             111   11111


Q ss_pred             HHHH---------HcCCc----EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          136 QFAK---------EHGLI----FMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       136 ~~~~---------~~~~~----~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      +|..         ..+++    +|.+||++|+|+.++-++|..+...
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            2221         11232    8999999999999999998875543

>cd04169 RF3 RF3 subfamily

Probab=99.75  E-value=6.6e-17  Score=124.69  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC---------C-----------CceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---------L-----------TIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      -+|+|+|++|+|||||+++|+...-.....         .           ..+.++......++...+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            379999999999999999997532111000         0           11344444555566667999999999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      .|......+++.+|++|+|+|+++.... ....++.....   .+.|+++++||+|+.+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            9888778889999999999999874322 22333333322   3789999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.74  E-value=6.2e-17  Score=124.54  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=120.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhHHh---hcCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITRSY---YRGA   79 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~   79 (211)
                      --|+++|.|++|||||++.++..+......+.++.....-++.+ .....|.+-|.||.-+-    ..+-..|   ++++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            35789999999999999999998887776666677766666666 33457899999995322    2244444   4567


Q ss_pred             cEEEEEEECCCHh---hHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEE-EEecCCC
Q 028237           80 AGALLVYDITRRE---TFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM-EASAKTA  153 (211)
Q Consensus        80 d~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~g  153 (211)
                      .++++|+|++..+   ..++...+..++..+..  .++|.+|++||+|+....+........+.+..++... .+||.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            7999999998644   46667777788877765  6899999999999754333323333444444555422 2999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 028237          154 QNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       154 ~~v~~~~~~l~~~~~~~~~  172 (211)
                      .|++++...+.+.+.+...
T Consensus       319 ~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         319 EGLDELLRALAELLEETKA  337 (369)
T ss_pred             cCHHHHHHHHHHHHHHhhh
Confidence            9999999999998888763

>PRK12735 elongation factor Tu; Reviewed

Probab=99.74  E-value=9.1e-17  Score=130.73  Aligned_cols=147  Identities=16%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC-------CCC-------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK-------RFQ-------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|++.       .+.       .......+.+.......+.....++.++||||++.|..
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK   90 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence            4689999999999999999999862       100       01111235555555555655567889999999998877


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCC---CHHHHHHHHHHcC----
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAV---STEEGEQFAKEHG----  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~----  142 (211)
                      .....+..+|++++|+|+.+....+ ....+..+..   .++|.+ +++||+|+.+..+.   ...++..+....+    
T Consensus        91 ~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~  166 (396)
T PRK12735         91 NMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD  166 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence            6677788999999999998632211 2222333322   367866 57999998642211   1224555565543    


Q ss_pred             -CcEEEEecCCCCC
Q 028237          143 -LIFMEASAKTAQN  155 (211)
Q Consensus       143 -~~~~~~sa~~g~~  155 (211)
                       ++++++||.+|.+
T Consensus       167 ~~~ii~~Sa~~g~n  180 (396)
T PRK12735        167 DTPIIRGSALKALE  180 (396)
T ss_pred             ceeEEecchhcccc
Confidence             6799999999853

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=1.2e-17  Score=125.25  Aligned_cols=163  Identities=17%  Similarity=0.242  Sum_probs=103.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhh-----hhHHhhcCCcE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRS-----ITRSYYRGAAG   81 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   81 (211)
                      ||++||+.+|||||..+.+..+..+.... ..+.+.......+. ...+.+.+||+||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999888777665443332 22333333333331 2357999999999876544     35778999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHH---HHHHhcCCCCcEEEEEecCCCCCCC--CC----CHHHHHHHHHHcC---CcEEEEe
Q 028237           82 ALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLAHRR--AV----STEEGEQFAKEHG---LIFMEAS  149 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~---~l~~~~~~~~p~ivv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~s  149 (211)
                      +|||+|+...+..+.+..+..   .+.++ .++..+.|+++|+|+...+  ..    ..+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999995444444444433   33333 3689999999999985421  11    1222333444445   6799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhc
Q 028237          150 AKTAQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~~~~~~~  173 (211)
                      ..+ ..+.++|..+++.++...+.
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~  181 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLST  181 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHH
Confidence            999 58999999999988876554

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=1.9e-16  Score=117.33  Aligned_cols=159  Identities=12%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCcee---EEEEEEEEECCEEEEEEEEeCCCcchhhhhhH-----Hhhc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMITIDNKPIKLQIWDTAGQESFRSITR-----SYYR   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~   77 (211)
                      +++|+|+|.+|+|||||+|.|++.........+.+.   +.....+... ....+.+||+||.........     ..+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986554322222221   1111111111 124689999999754322222     2366


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-----------CCHHHHHHHH----HHcC
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-----------VSTEEGEQFA----KEHG  142 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~----~~~~  142 (211)
                      .+|++++|.+- +..  ..-..++..+...   +.|+++|+||+|+.....           ...+++++.+    ...+
T Consensus        80 ~~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78888887542 111  1123445555443   689999999999832111           1112222222    2222


Q ss_pred             ---CcEEEEecC--CCCCHHHHHHHHHHHHHHHH
Q 028237          143 ---LIFMEASAK--TAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       143 ---~~~~~~sa~--~g~~v~~~~~~l~~~~~~~~  171 (211)
                         .++|.+|+.  .+.++..+.+.|+..+.+..
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence               259999998  56899999999888877653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=2e-16  Score=119.08  Aligned_cols=154  Identities=17%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC-----------------------ceeEEEEEE-------------EEEC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----------------------IGVEFGARM-------------ITID   51 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~   51 (211)
                      ||+++|+.++|||||+++|....+.......                       .+.+.....             -.++
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999876553321100                       011100000             0112


Q ss_pred             CEEEEEEEEeCCCcchhhhhhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237           52 NKPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV  129 (211)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  129 (211)
                      .....+.+.|+||++.|.......+.  .+|++++|+|+..... .....++..+..   .++|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            22467899999999988765555553  6899999999876433 122233333333   37899999999998543211


Q ss_pred             --CHHHHHHHHHH--------------------------cCCcEEEEecCCCCCHHHHHHHHHH
Q 028237          130 --STEEGEQFAKE--------------------------HGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus       130 --~~~~~~~~~~~--------------------------~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                        ...++..+...                          ..+|++.+|+.+|.|++++...|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence              11222222221                          1247999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>CHL00071 tufA elongation factor Tu

Probab=99.72  E-value=4e-16  Score=127.47  Aligned_cols=149  Identities=15%  Similarity=0.115  Sum_probs=100.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ...++|+++|++++|||||+++|++.....              ......+++.......+.....++.+.||||+..|.
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence            457899999999999999999998742110              011113455554445555556788999999999887


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG---  142 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  142 (211)
                      ......+..+|++++|+|+.....-+ ....+..+..   .+.| +|+++||+|+.+..+.   ..+++..+.+..+   
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~  165 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG  165 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            77777788999999999998643211 2222333322   2678 7789999998653221   1234555555543   


Q ss_pred             --CcEEEEecCCCCCH
Q 028237          143 --LIFMEASAKTAQNV  156 (211)
Q Consensus       143 --~~~~~~sa~~g~~v  156 (211)
                        ++++++||.+|.++
T Consensus       166 ~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        166 DDIPIVSGSALLALEA  181 (409)
T ss_pred             CcceEEEcchhhcccc
Confidence              67999999999754

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=5.1e-16  Score=119.03  Aligned_cols=160  Identities=20%  Similarity=0.180  Sum_probs=111.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-----hhhh----hhHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-----SFRS----ITRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~----~~~~~   75 (211)
                      ....|+|.|+||+|||||++.+++......+.|.++  .....-+++....+++++||||.-     +-..    .....
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT--K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT--KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc--cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            356899999999999999999998877766666534  434444455445789999999931     1111    11122


Q ss_pred             hcCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCC
Q 028237           76 YRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKT  152 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~  152 (211)
                      -+-.++++|+||++...  +.+....++.++....  +.|+++|+||+|..+.  ...++.+......+.. ...+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE--EKLEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch--hHHHHHHHHHHhhccccccceeeee
Confidence            23457999999998743  5666677788887776  4899999999998643  2344444445444443 67788888


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~~  170 (211)
                      +.+++.+-..+.....+.
T Consensus       321 ~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         321 GCGLDKLREEVRKTALEP  338 (346)
T ss_pred             hhhHHHHHHHHHHHhhch
Confidence            888888777776654443

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=1e-16  Score=123.72  Aligned_cols=114  Identities=19%  Similarity=0.141  Sum_probs=79.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCC----------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      +|+++|++++|||||+++|+...-..                ......+++.......+....+++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999997421100                00111233444333444444589999999999989888


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +..+++.+|++|+|+|..+...... ...+..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9999999999999999977432221 233333332   3789999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.71  E-value=5.1e-17  Score=132.28  Aligned_cols=162  Identities=25%  Similarity=0.326  Sum_probs=121.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|..|+||||||-.|....|.+...+-...-.-...++-+  .+...|+|++...........-++.+|++.+|
T Consensus         9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv   86 (625)
T KOG1707|consen    9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVICLV   86 (625)
T ss_pred             ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence            5899999999999999999999998877655542222212223223  35578999987777666677889999999999


Q ss_pred             EECCCHhhHHHHHH-HHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHH-HHHHHHHc-CCc-EEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLAS-WLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEE-GEQFAKEH-GLI-FMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~-~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~~-~~~~sa~~g~~v~~~  159 (211)
                      |+++++++++.+.. |+..+++...  .+.|+|+|+||+|..+......+. ...+.... .+. .+++||++-.++.++
T Consensus        87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~  166 (625)
T KOG1707|consen   87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSEL  166 (625)
T ss_pred             EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhh
Confidence            99999999999885 6666655442  689999999999997665553333 33333333 243 899999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          160 FIKTAATIYK  169 (211)
Q Consensus       160 ~~~l~~~~~~  169 (211)
                      |.+-.+.++.
T Consensus       167 fYyaqKaVih  176 (625)
T KOG1707|consen  167 FYYAQKAVIH  176 (625)
T ss_pred             hhhhhheeec
Confidence            9987665543

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.71  E-value=5.1e-16  Score=129.80  Aligned_cols=117  Identities=19%  Similarity=0.182  Sum_probs=82.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      ..-+|+|+|+.++|||||+++|+...-...                    .....+.++......+....+++++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456999999999999999999974211000                    001113444444455555568999999999


Q ss_pred             cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +..|......+++.+|++|+|+|+.+.... ....++.....   .+.|+++++||+|+..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            999988788889999999999999874322 22333333322   3899999999999743

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=3.4e-16  Score=129.72  Aligned_cols=154  Identities=19%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------------C-------------------CCceeEEEEEEEEECC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------D-------------------LTIGVEFGARMITIDN   52 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|+.++|||||+.+|+...-....            .                   ..-+++.......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45689999999999999999999754221110            0                   0012333333334444


Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE  132 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (211)
                      ...++.+|||||++.|.......+..+|++++|+|+........ ...+..+....  ..|++|++||+|+.+.+....+
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence            56789999999999887666666899999999999976422111 11111122221  2478999999998643221122


Q ss_pred             ----HHHHHHHHc----CCcEEEEecCCCCCHHHHH
Q 028237          133 ----EGEQFAKEH----GLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus       133 ----~~~~~~~~~----~~~~~~~sa~~g~~v~~~~  160 (211)
                          ++..+....    .++++++||++|.|+.++-
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence                222333333    3679999999999998753

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=7e-16  Score=124.95  Aligned_cols=158  Identities=19%  Similarity=0.146  Sum_probs=121.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      .+.=|.|||+...|||||+..|-...........++..+.--.+... ....++|.|||||..|..|+.+...-+|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            35668999999999999999999988877777766666666667666 34789999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEecCCCCC
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG---------LIFMEASAKTAQN  155 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~g~~  155 (211)
                      |+.++|.-    +.+..+.+......+.|++|.+||+|.++   .+.+.+.+-...+|         +.++++||++|.|
T Consensus       231 VVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  231 VVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            99998832    11223334444445999999999999865   34555444333333         3599999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKK  170 (211)
Q Consensus       156 v~~~~~~l~~~~~~~  170 (211)
                      ++.|-+.+.-+..-+
T Consensus       304 l~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  304 LDLLEEAILLLAEVM  318 (683)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            999998776554444

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=4.5e-16  Score=120.65  Aligned_cols=144  Identities=16%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh----
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS----   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----   70 (211)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+++.+|||||...+..    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876543          233444555555566677788999999999432211    


Q ss_pred             ---h-------------------hHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           71 ---I-------------------TRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        71 ---~-------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                         +                   +...+.  .+|+++++++.+...-...-..++..+   .. ++|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l---~~-~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL---SK-RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH---hc-cCCEEEEEECCCcCCH
Confidence               0                   001222  467788888776422111112223333   22 6899999999998552


Q ss_pred             C--CCCHHHHHHHHHHcCCcEEEEecCC
Q 028237          127 R--AVSTEEGEQFAKEHGLIFMEASAKT  152 (211)
Q Consensus       127 ~--~~~~~~~~~~~~~~~~~~~~~sa~~  152 (211)
                      .  ......+.+.+..++++++......
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            2  2334556777888899988766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=3.2e-16  Score=117.48  Aligned_cols=113  Identities=20%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCC----------------CCCCceeEEEEEEEEEC--------CEEEEEEEEeCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMITID--------NKPIKLQIWDTA   63 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   63 (211)
                      +|+|+|+.++|||||+.+|+...-...                .....++........+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999976432110                01111111112222333        347899999999


Q ss_pred             CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      |+..|......+++.+|++++|+|+.+....+. ...+....   ..+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcc
Confidence            999999999999999999999999987654433 22222222   2368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=9.5e-16  Score=126.70  Aligned_cols=148  Identities=15%  Similarity=0.104  Sum_probs=99.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCC------CCC--------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKR------FQP--------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|++..      ...        ......+.+.......++....++.++|+||++.|-.
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~  159 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK  159 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence            46899999999999999999998521      111        1122234444444444544567889999999999987


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEH-----  141 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----  141 (211)
                      .....+..+|++++|+|+.+..... ...++..+...   ++| +++++||+|+.+..+.   ..+++..+....     
T Consensus       160 ~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~  235 (478)
T PLN03126        160 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGD  235 (478)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            7778888999999999988643222 22333333332   677 7789999998652211   122445555543     


Q ss_pred             CCcEEEEecCCCCCH
Q 028237          142 GLIFMEASAKTAQNV  156 (211)
Q Consensus       142 ~~~~~~~sa~~g~~v  156 (211)
                      +++++++|+.+|.++
T Consensus       236 ~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        236 DIPIISGSALLALEA  250 (478)
T ss_pred             cceEEEEEccccccc
Confidence            467999999988543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.69  E-value=4e-16  Score=127.28  Aligned_cols=150  Identities=20%  Similarity=0.190  Sum_probs=95.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCC-------------------------------CCCceeEEEEEEEEECCEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMITIDNKPI   55 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ++|+++|+.++|||||+.+|+...-....                               +..-+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999643211000                               00112333333344444557


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC----H
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS----T  131 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~----~  131 (211)
                      ++.++||||++.|.......+..+|++|+|+|+......+. ...+..+....  ..++++++||+|+.+.....    .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            89999999999987666678899999999999976432211 11122222221  34688999999986432211    1


Q ss_pred             HHHHHHHHHcC---CcEEEEecCCCCCHHHH
Q 028237          132 EEGEQFAKEHG---LIFMEASAKTAQNVEEA  159 (211)
Q Consensus       132 ~~~~~~~~~~~---~~~~~~sa~~g~~v~~~  159 (211)
                      ++...+.+..+   ++++++||.+|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            22333444444   46999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.9e-16  Score=109.58  Aligned_cols=154  Identities=19%  Similarity=0.264  Sum_probs=114.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .=|++++|..|+|||||++.|...+..... ||  .........+.+  .++.-+|.+|+......|+.|+..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            348999999999999999999877654322 21  122233344554  7889999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHH------HHHc--------C---CcEEE
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQF------AKEH--------G---LIFME  147 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~--------~---~~~~~  147 (211)
                      +|+-|.+.+.+....++.+..... .+.|+++++||+|.+...  .+++.+..      +...        +   +.++.
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            999999998888877666644332 589999999999986643  34433221      1111        1   23778


Q ss_pred             EecCCCCCHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~  166 (211)
                      +|...+.+--+.|.|+.+.
T Consensus       173 csi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEccCccceeeeehhhh
Confidence            9999998888888887654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.69  E-value=3.9e-16  Score=128.35  Aligned_cols=151  Identities=18%  Similarity=0.166  Sum_probs=105.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCC-----------------------------CCCCCCceeEEEEEEEEECCEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------------------PVHDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++|+++|+.++|||||+.+|+...-.                             .......+.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            34689999999999999999988642110                             0011122555555556666677


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhH-------HHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLASWLEDARQHANANMT-IMLIGNKCDLAHR  126 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~  126 (211)
                      +.+.++|+||++.|......++..+|++|+|+|+++. .+       ......+..+..   .++| ++|++||+|+.+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence            8999999999999999899999999999999999863 12       122222222222   2664 6888999997521


Q ss_pred             C------CCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237          127 R------AVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEE  158 (211)
Q Consensus       127 ~------~~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~  158 (211)
                      .      ....++++.+++..+     ++++++||.+|.|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1      112455667777666     5699999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=1.1e-15  Score=120.32  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE---------------------CC-EEEEEEEEeCCCc-
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---------------------DN-KPIKLQIWDTAGQ-   65 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~-   65 (211)
                      |+++|.+++|||||+|+|++........+..+.+...-...+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999988765433333332322222221                     22 3478999999997 


Q ss_pred             ---chhhhhhHHh---hcCCcEEEEEEECC
Q 028237           66 ---ESFRSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        66 ---~~~~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                         +.+..+...+   ++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4455555554   89999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.1e-15  Score=118.49  Aligned_cols=133  Identities=20%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----C-----------ceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      +|+|+|++|+|||||+++|+..........     +           .+.+.......+....+.+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999975322111000     0           011222222233334578999999999988888


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEE
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM  146 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      +..+++.+|++++|+|+++....... ..+..+..   .+.|.++++||+|....  ...+....+....+.+++
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~  149 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVV  149 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeE
Confidence            88999999999999999875543322 22233322   37899999999998653  222334444444555433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.69  E-value=4.7e-16  Score=127.68  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=103.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCCceeEEEEEEE---------------EECC-----------
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMI---------------TIDN-----------   52 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-----------   52 (211)
                      ..+..++|+++|+..+|||||+..|++...   ..+.....+.+......               ....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            346789999999999999999999986422   22222211111111100               0000           


Q ss_pred             -----EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           53 -----KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        53 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                           ....+.++|+||++.|-......+..+|++++|+|+.+..........+..+....  -.|++|++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHH
Confidence                 02468999999999998777778889999999999986421111122222222221  24689999999986422


Q ss_pred             CC--CHHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          128 AV--STEEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       128 ~~--~~~~~~~~~~~---~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ..  ..+++..+...   .+++++++||.+|.|+++|++.|.+.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            11  12233333332   357899999999999998888877533

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=2.2e-15  Score=102.16  Aligned_cols=106  Identities=22%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh---------hhhhHHhhc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------RSITRSYYR   77 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   77 (211)
                      +|+|+|.+|+|||||+|.|++... .....+..+.......+.+.+  ..+.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998543 233333334444344455666  45579999995321         111223348


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK  120 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK  120 (211)
                      .+|++++|+|..++.. +....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999887322 22334444442    48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00049 elongation factor Tu; Reviewed

Probab=99.68  E-value=2.2e-15  Score=122.61  Aligned_cols=148  Identities=16%  Similarity=0.157  Sum_probs=98.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ...++|+++|+.++|||||+++|++....              .......+.+.......+.....++.+.||||+..|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            34789999999999999999999863110              0011123455555555565556788999999998887


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCC---CHHHHHHHHHHc----
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAV---STEEGEQFAKEH----  141 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~----  141 (211)
                      ......+..+|++++|+|+.+.... ....++..+...   +.|.+ +++||+|+.+..+.   ...++..+....    
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  165 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence            7677778999999999999864321 222233333322   68876 58999998642211   112344444443    


Q ss_pred             -CCcEEEEecCCCCC
Q 028237          142 -GLIFMEASAKTAQN  155 (211)
Q Consensus       142 -~~~~~~~sa~~g~~  155 (211)
                       +++++++||+++.+
T Consensus       166 ~~~~iv~iSa~~g~~  180 (396)
T PRK00049        166 DDTPIIRGSALKALE  180 (396)
T ss_pred             cCCcEEEeecccccC
Confidence             36799999998753

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.68  E-value=1.5e-15  Score=124.98  Aligned_cols=152  Identities=18%  Similarity=0.147  Sum_probs=101.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC--CC---------------------------CCCCCceeEEEEEEEEECCEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++|+++|+.++|||||+.+|+...-  ..                           ......+.+.......++...
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            4468999999999999999999875211  00                           011122455555555566667


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEecCCCCC--
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLASWLEDARQHANANMT-IMLIGNKCDLAH--  125 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~--  125 (211)
                      +.+.|+|+||+..|.......+..+|++|+|+|+.....   +   ......+..+...   ++| +||++||+|...  
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence            899999999999998888888999999999999986420   0   1122222222222   666 678999999532  


Q ss_pred             CCCCC----HHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237          126 RRAVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE  158 (211)
Q Consensus       126 ~~~~~----~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~  158 (211)
                      ..+..    .+++..+....+     ++++++|+.+|.|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            11111    233444444333     5699999999999864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.67  E-value=3.5e-15  Score=110.43  Aligned_cols=159  Identities=16%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhh---H
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SIT---R   73 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~---~   73 (211)
                      ++|+|+|.+|+|||||+|.+++........  +..+.........+.  ...+.++||||.....        .+.   .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876543332  222333333333344  4689999999964331        111   1


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCC------CHHHHHHHHHHcCCcE
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAV------STEEGEQFAKEHGLIF  145 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  145 (211)
                      .....+|++|+|+++.+ .+... ...++.+.....  .-.++++++|+.|.......      .....+.+.+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            22457899999999987 33222 223333333221  23578999999996543211      1244556666666555


Q ss_pred             EEEec-----CCCCCHHHHHHHHHHHHHH
Q 028237          146 MEASA-----KTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       146 ~~~sa-----~~g~~v~~~~~~l~~~~~~  169 (211)
                      +.++.     ..+.++.++++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            55554     3456677777776666554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=1.9e-15  Score=131.10  Aligned_cols=118  Identities=17%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC--------CC-----C---CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------VH-----D---LTIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------~~-----~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      +...+|+|+|+.++|||||+++|+...-..        ..     .   ...+.+.......+....+++++|||||+..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            456799999999999999999998532110        00     0   0012222222233333468999999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      |...+..+++.+|++|+|+|.++.........| ..+..   .+.|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            999999999999999999999886655443333 33332   3789999999999854

>PLN03127 Elongation factor Tu; Provisional

Probab=99.66  E-value=4e-15  Score=122.37  Aligned_cols=147  Identities=15%  Similarity=0.121  Sum_probs=93.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC------CCCC--------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK------RFQP--------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+++|+.++|||||+++|.+.      ....        ......+++.......+.....++.++||||+..|-.
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~  139 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK  139 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence            4689999999999999999999732      1000        0111134555555566666667899999999998876


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEH-----  141 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-----  141 (211)
                      .....+..+|++++|+|+.+....+ ....+..+..   .++| +++++||+|+.+..+..   ..++..+....     
T Consensus       140 ~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~  215 (447)
T PLN03127        140 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGD  215 (447)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6666677899999999997643211 2222233322   2788 57889999986422111   11223333332     


Q ss_pred             CCcEEEEecC---CCCC
Q 028237          142 GLIFMEASAK---TAQN  155 (211)
Q Consensus       142 ~~~~~~~sa~---~g~~  155 (211)
                      .++++++|+.   +|.|
T Consensus       216 ~vpiip~Sa~sa~~g~n  232 (447)
T PLN03127        216 EIPIIRGSALSALQGTN  232 (447)
T ss_pred             cceEEEeccceeecCCC
Confidence            3578888775   4544

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.66  E-value=5.2e-15  Score=113.26  Aligned_cols=156  Identities=22%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYR   77 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~   77 (211)
                      ..-+|+++|+|++|||||++.|++........++++.+...-...+++  .++++.|+||.-.-.       .......+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            456899999999999999999999887766666667777777777776  889999999843221       23445688


Q ss_pred             CCcEEEEEEECCCHhh-HHHHHHHHH-----------------------------------------HHHHhc-------
Q 028237           78 GAAGALLVYDITRRET-FNHLASWLE-----------------------------------------DARQHA-------  108 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~-~~~~~~~~~-----------------------------------------~l~~~~-------  108 (211)
                      ++|++|+|+|+....+ .+.+...+.                                         .+..+.       
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999985443 333322221                                         011000       


Q ss_pred             -----------------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          109 -----------------NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       109 -----------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                                       ..-+|.+++.||+|+..     .++...+.+..  +.+.+||..+.|++++.+.|.+.+--
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                             01278999999999854     44455555444  78999999999999999988886643

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.65  E-value=3.9e-15  Score=127.90  Aligned_cols=151  Identities=20%  Similarity=0.156  Sum_probs=96.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------------CC-------------------CceeEEEEEEEEECCE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMITIDNK   53 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~~   53 (211)
                      ..++|+++|++++|||||+++|+...-....            ..                   .-+.+.......+...
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            4689999999999999999999864321110            00                   0122222333344444


Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--  131 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--  131 (211)
                      ..++.++||||++.|.......+..+|++++|+|+......+. ...+..+....  ..|++|++||+|+.+......  
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHHHHH
Confidence            5788999999999887666667889999999999976432111 11122222221  357889999999864222111  


Q ss_pred             --HHHHHHHHHcC---CcEEEEecCCCCCHHH
Q 028237          132 --EEGEQFAKEHG---LIFMEASAKTAQNVEE  158 (211)
Q Consensus       132 --~~~~~~~~~~~---~~~~~~sa~~g~~v~~  158 (211)
                        .++..+....+   ++++++||++|.|+.+
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              22333444544   4599999999999885

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.6e-15  Score=119.74  Aligned_cols=172  Identities=22%  Similarity=0.194  Sum_probs=120.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-------------CCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCcch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------VHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~   67 (211)
                      +..-++.|+-+...|||||..+|+...-..             ...+.-|++...++..+   .+..+.++++|||||..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            445689999999999999999987532211             11122255555554333   35569999999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHHcCCcEE
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAKEHGLIFM  146 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~  146 (211)
                      |.....+.+..++++|+|+|+...-..+.+..++.-+.    .+..+|.|+||+|++..+... ..++..+....+.+++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99999999999999999999998665555555444433    377899999999997643211 2223333333445699


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCc
Q 028237          147 EASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESY  183 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~  183 (211)
                      .+||++|.|+.++++.    ++++.+.+....+.+..
T Consensus       214 ~vSAK~G~~v~~lL~A----II~rVPpP~~~~d~plr  246 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEA----IIRRVPPPKGIRDAPLR  246 (650)
T ss_pred             EEEeccCccHHHHHHH----HHhhCCCCCCCCCcchH
Confidence            9999999999996555    45566666655555443

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=3.2e-15  Score=112.20  Aligned_cols=162  Identities=18%  Similarity=0.256  Sum_probs=107.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-------hhhhhHHhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYY   76 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~   76 (211)
                      ..+++|+++|..|+|||||||+|+.+...+...-..+.+........-+ ...+.|||+||..+       +..+...++
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            4578999999999999999999997665554433334433333332222 26789999999554       677788889


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC-------CCCHHHHHHHHHHc--------
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR-------AVSTEEGEQFAKEH--------  141 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~--------  141 (211)
                      ...|.++++.++.|+.---. ..+++.+.... .+.++++++|.+|....-       ......++++.++.        
T Consensus       116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998763222 22233332221 258999999999984431       11112222222211        


Q ss_pred             --CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          142 --GLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       142 --~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                        =.|++.++...+-|+.++...+++.+-
T Consensus       194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         194 QEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence              146888888999999999998887665

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=1.7e-14  Score=125.02  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=81.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----CCC-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      +.+.+|+|+|+.++|||||+++|+...-..     ...           ...+++.......+....+++.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            457799999999999999999997531100     000           1113333333333333458899999999998


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +...+...++.+|++|+|+|+.+....+. ...+..+..   .++|.++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88888899999999999999987543222 222333322   3789999999999864

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=1.5e-14  Score=125.36  Aligned_cols=118  Identities=19%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----CCC-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      +..-+|+|+|+.++|||||+++|+...-..     ...           ...+++.......+....+++.+|||||+..
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            345699999999999999999997422110     000           0113333333334444458999999999998


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +...+..+++.+|++|+|+|+.+....+.. .++..+..   .+.|+++++||+|+..
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888888999999999999999875443322 22333332   3789999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.61  E-value=1.8e-14  Score=120.60  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=83.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEeCC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMITIDNKPIKLQIWDTA   63 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   63 (211)
                      ....+|+|+|++++|||||+++|+...-...                    .....+.++......++...+++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3456999999999999999999864211000                    00112445555555666667899999999


Q ss_pred             CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      |+..|......++..+|++|+|+|..+... .....++..+..   .+.|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            999888777778999999999999986321 122334433322   3789999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.61  E-value=5.1e-14  Score=114.02  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---------------------D-NKPIKLQIWDTAG   64 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   64 (211)
                      ++|+|+|.+++|||||+|+|++........+..+.+.....+.+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988775443343343333322221                     1 1236789999999


Q ss_pred             c----chhhhhhHHh---hcCCcEEEEEEECC
Q 028237           65 Q----ESFRSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        65 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    2334455556   88999999999996

>cd00066 G-alpha G protein alpha subunit

Probab=99.59  E-value=4.5e-14  Score=111.64  Aligned_cols=119  Identities=19%  Similarity=0.254  Sum_probs=88.2

Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLIGNKC  121 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~  121 (211)
                      ..+.+.+||++|+...+..|.+++.+++++|||+|+++.          ..+.+....+..+..... .+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            358899999999999999999999999999999999874          345554555555544433 689999999999


Q ss_pred             CCCCC--------------C--CCCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          122 DLAHR--------------R--AVSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       122 D~~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      |+-.+              .  ..+.+.+..+...          ..+....++|.+..++..+|..+.+.+.+..
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            96221              1  2334454444332          1234567999999999999999999888764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.59  E-value=1.5e-14  Score=95.63  Aligned_cols=136  Identities=20%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----chhhhhhHHhhcCCcEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----ESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i   83 (211)
                      |++++|..|+|||||.+.|.+...  .+..|+.       +.+.+..    .+||||-    ..+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            799999999999999999987633  2333322       2222222    5699993    333333445577899999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~  162 (211)
                      +|-.++++++.--     ..+...  -.+|+|-|++|.|+.+  ....+..++|..+-|.. +|++|+.++.|+++++.+
T Consensus        70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999999875211     011111  2567999999999975  34567788888888874 999999999999999999


Q ss_pred             HHH
Q 028237          163 TAA  165 (211)
Q Consensus       163 l~~  165 (211)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            875

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.2e-14  Score=116.64  Aligned_cols=167  Identities=22%  Similarity=0.231  Sum_probs=108.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-h--------hhHH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-S--------ITRS   74 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~--------~~~~   74 (211)
                      +..++|+|+|+||+|||||+|.|............ |++.......++-..+++.+.||+|..+.. .        ....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            45689999999999999999999988765433332 444444444444444889999999976511 1        2234


Q ss_pred             hhcCCcEEEEEEECCCHhh--HHHHHHHHHHHHHh------cCCCCcEEEEEecCCCCCC-CCCCHHHHHHHHHHcC---
Q 028237           75 YYRGAAGALLVYDITRRET--FNHLASWLEDARQH------ANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEHG---  142 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~------~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~---  142 (211)
                      -++.+|++++|+|+....+  ...+...+......      ...+.|++++.||.|+... .+..... ..+....+   
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~  423 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSV  423 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcc
Confidence            4778999999999944332  22223333333221      1245899999999998654 2222211 11222222   


Q ss_pred             Cc-EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          143 LI-FMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       143 ~~-~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      .+ +.++|+++++|+.++...+...+.....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            22 6679999999999999998887776644

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.58  E-value=6e-14  Score=107.45  Aligned_cols=160  Identities=16%  Similarity=0.302  Sum_probs=121.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE--CCEEEEEEEEeCCCcchhhhhhHHhhcCCc----
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DNKPIKLQIWDTAGQESFRSITRSYYRGAA----   80 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d----   80 (211)
                      -+|+|+|..++||||||.+|-+..   .+.+..+..|....+.-  ++.-.++.+|-..|...+..+..+.+...+    
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            479999999999999999998764   45555566666655544  334477899999999999988888876553    


Q ss_pred             EEEEEEECCCHhh-HHHHHHHHHHHHHhcC--------------------------------------------------
Q 028237           81 GALLVYDITRRET-FNHLASWLEDARQHAN--------------------------------------------------  109 (211)
Q Consensus        81 ~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~--------------------------------------------------  109 (211)
                      +||++.|+++|.+ ++.+..|...+.++.+                                                  
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            8999999999965 5556666654443322                                                  


Q ss_pred             -----------CCCcEEEEEecCCCCC----C-------CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          110 -----------ANMTIMLIGNKCDLAH----R-------RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       110 -----------~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                                 .++|++||.+|+|...    +       .......+++||..+|+.++.+|+++..|++-+..+|.+.+
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                       0277999999999832    1       11223457889999999999999999999999999999877


Q ss_pred             HH
Q 028237          168 YK  169 (211)
Q Consensus       168 ~~  169 (211)
                      +.
T Consensus       290 yG  291 (473)
T KOG3905|consen  290 YG  291 (473)
T ss_pred             cC
Confidence            54

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.56  E-value=2.2e-14  Score=103.34  Aligned_cols=115  Identities=22%  Similarity=0.364  Sum_probs=71.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhh-hHH--hhcCCcEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSI-TRS--YYRGAAGA   82 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~-~~~--~~~~~d~~   82 (211)
                      -.|+|+|+.|||||+|+.+|..+....+...- ....   .+.+ ......+.++|+||+.+.+.. ...  +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999998554333322 1111   1222 223457889999999987753 333  47889999


Q ss_pred             EEEEECCC-HhhHHHHHHH-HHHHHHhc--CCCCcEEEEEecCCCCC
Q 028237           83 LLVYDITR-RETFNHLASW-LEDARQHA--NANMTIMLIGNKCDLAH  125 (211)
Q Consensus        83 i~v~d~~~-~~~~~~~~~~-~~~l~~~~--~~~~p~ivv~nK~D~~~  125 (211)
                      |||+|... +.....+.++ +..+....  ....|++|+.||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 4445555554 44443222  36899999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.56  E-value=7.9e-14  Score=111.31  Aligned_cols=174  Identities=16%  Similarity=0.149  Sum_probs=123.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      .-+|+|+-+...|||||+..|+.+.-..              .-...-|+++..+...+.+++++++|.|||||..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3589999999999999999998753221              11223478888888888888899999999999999999


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHH-------cCC
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKE-------HGL  143 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~  143 (211)
                      ..+.+..+|++++++|+.+..    +.+....+.+....+.+.|||+||+|.+..+.. -.+++..+..+       .++
T Consensus        85 VERvl~MVDgvlLlVDA~EGp----MPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGP----MPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCC----CCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            999999999999999998733    222233444444558889999999998765422 13344444333       456


Q ss_pred             cEEEEecCCCC------CHHHHHHHHHHHHHHHHhcCcccCCCCCc
Q 028237          144 IFMEASAKTAQ------NVEEAFIKTAATIYKKIQDGVFDVSNESY  183 (211)
Q Consensus       144 ~~~~~sa~~g~------~v~~~~~~l~~~~~~~~~~~~~~~~~~~~  183 (211)
                      |++..|++.|.      +-.+-+.-|.+.+++..+.+..+.+.+.+
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ  206 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQ  206 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeE
Confidence            88889988772      22333555566666677777755555443

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=6.8e-14  Score=110.50  Aligned_cols=156  Identities=19%  Similarity=0.137  Sum_probs=105.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCC-----------------------------CCCCCCceeEEEEEEEEECCE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------------------PVHDLTIGVEFGARMITIDNK   53 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   53 (211)
                      ....++++++|+..+|||||+-+|+...-.                             ....+.-|.++......++-.
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            345789999999999999999998543110                             011112366666666777666


Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHH---HHH--HHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH---LAS--WLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~---~~~--~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      .+.+.|.|+||+..|-......+..+|+.|+|+|+.+.+....   -.+  ....+.+... -..+||++||+|..+-++
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence            7889999999999998888888999999999999987631111   111  1122222222 356888999999977443


Q ss_pred             CCHHH----HHHHHHHcC-----CcEEEEecCCCCCHHHH
Q 028237          129 VSTEE----GEQFAKEHG-----LIFMEASAKTAQNVEEA  159 (211)
Q Consensus       129 ~~~~~----~~~~~~~~~-----~~~~~~sa~~g~~v~~~  159 (211)
                      ...++    +..+.+..|     ++++++|+..|.|+.+-
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            32222    334455544     45999999999998753

>smart00275 G_alpha G protein alpha subunit

Probab=99.54  E-value=4.4e-13  Score=106.91  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=87.1

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEecCC
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHAN-ANMTIMLIGNKCD  122 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D  122 (211)
                      .+.+.+||.+|+...+..|.+++.+++++|||+|+++.          ..+......+..+..... .+.|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            47789999999999999999999999999999999873          244555555555544333 5899999999999


Q ss_pred             CCCC--------------C-CCCHHHHHHHHHH-----c------CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          123 LAHR--------------R-AVSTEEGEQFAKE-----H------GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       123 ~~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      +..+              . ..+.+.+..+...     .      .+.+..++|.+..++..+|..+.+.+.+...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            7321              0 1234444443322     1      1346679999999999999999988887653

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=2.4e-13  Score=108.90  Aligned_cols=169  Identities=22%  Similarity=0.206  Sum_probs=118.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC---------------CCCCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCc
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF---------------QPVHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   65 (211)
                      +..-++.|+-+-..|||||..+|+...-               +.+..+.+++.-......+   ++..+.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            3455889999999999999999865321               1222232233333333333   457899999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH-HHHHHHcCCc
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG-EQFAKEHGLI  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~  144 (211)
                      -.|.....+.+..+.++++|+|++..-..+.+...+.-+..    +.-++-|+||+|++..+   .+.+ .++-.-.|++
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid  159 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIGID  159 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhCCC
Confidence            99988888888999999999999986666666666655543    66789999999997633   3333 3333445654


Q ss_pred             ---EEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCc
Q 028237          145 ---FMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESY  183 (211)
Q Consensus       145 ---~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~  183 (211)
                         .+.+||++|.|++++++.|++    +.|.+..+.+.+..
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~----~iP~P~g~~~~pLk  197 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVE----KIPPPKGDPDAPLK  197 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHh----hCCCCCCCCCCcce
Confidence               888999999999998776665    45555544444433

>PRK09866 hypothetical protein; Provisional

Probab=99.53  E-value=1.2e-12  Score=109.46  Aligned_cols=109  Identities=16%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             EEEEEEeCCCcch-----hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237           55 IKLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV  129 (211)
Q Consensus        55 ~~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  129 (211)
                      .++.+.||||...     ........+..+|+++||+|.....+..+ ......+.... .+.|+++|+||+|..+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence            4578999999643     22234457999999999999987433222 12233333321 13599999999998644333


Q ss_pred             CHHHHHHHHHH----cCC---cEEEEecCCCCCHHHHHHHHHH
Q 028237          130 STEEGEQFAKE----HGL---IFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus       130 ~~~~~~~~~~~----~~~---~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ..+.+..+...    ..+   .+|++||+.|.|++++++.|..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            45555555432    222   4999999999999999998876

>PRK00007 elongation factor G; Reviewed

Probab=99.53  E-value=2.2e-13  Score=118.13  Aligned_cols=144  Identities=19%  Similarity=0.129  Sum_probs=91.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----CCC-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      +.+.+|+|+|++++|||||+++|+...-..     ...           ...+++.......+....+++.++||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            456799999999999999999997421100     000           1113333333333433458999999999998


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC----
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL----  143 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~----  143 (211)
                      |.......++.+|++++|+|+...-..+. ...+..+..   .+.|.++++||+|+.+..  .....+++.+..+.    
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~  161 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPVP  161 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCeee
Confidence            87777778899999999999876433332 222233333   378999999999986532  22333444444433    


Q ss_pred             cEEEEecCCC
Q 028237          144 IFMEASAKTA  153 (211)
Q Consensus       144 ~~~~~sa~~g  153 (211)
                      ..+++|+.++
T Consensus       162 ~~ipisa~~~  171 (693)
T PRK00007        162 IQLPIGAEDD  171 (693)
T ss_pred             EEecCccCCc
Confidence            2445555544

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=5.3e-13  Score=115.70  Aligned_cols=110  Identities=21%  Similarity=0.180  Sum_probs=75.2

Q ss_pred             EcCCCCCHHHHHHHHhhCCCCCCC-----C-----------CCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh
Q 028237           12 IGDTGVGKSCLLLQFTDKRFQPVH-----D-----------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY   75 (211)
Q Consensus        12 ~G~~~~GKStli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   75 (211)
                      +|+.++|||||+++|+...-....     .           ...+.+.......+....+.+++|||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999653211000     0           001233333333333345899999999999888888889


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +..+|++++|+|+++........ .+..+..   .+.|+++++||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            99999999999998765444332 2233322   3789999999999853

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.50  E-value=1.5e-13  Score=110.52  Aligned_cols=170  Identities=13%  Similarity=0.091  Sum_probs=118.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-----hh----hhHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-----RS----ITRSYY   76 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~----~~~~~~   76 (211)
                      .-.++|+|.+++|||||+|.++.......+.++++.....  -+++.+-..|+++||||.-..     ..    ......
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhh--hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            4578999999999999999999777766666654444433  334445588999999994221     10    112223


Q ss_pred             cCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCcEEEEecC
Q 028237           77 RGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE---GEQFAKEHGLIFMEASAK  151 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~sa~  151 (211)
                      +--.+|+|++|++...  +......++..+..... ++|.|+|+||+|....+....+.   +..+...-+++++++|..
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~  324 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV  324 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence            3445999999998744  45555667777765543 89999999999997655554432   344444556899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcccC
Q 028237          152 TAQNVEEAFIKTAATIYKKIQDGVFDV  178 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~~~~~~~~~~~~  178 (211)
                      +.+||.++-...++.+....-......
T Consensus       325 ~eegVm~Vrt~ACe~LLa~RVE~Klks  351 (620)
T KOG1490|consen  325 QEEGVMDVRTTACEALLAARVEQKLKS  351 (620)
T ss_pred             chhceeeHHHHHHHHHHHHHHHHHhhh
Confidence            999999998888877776655444333

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.50  E-value=5.6e-13  Score=99.79  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=89.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------h-hhH---
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------S-ITR---   73 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~~~---   73 (211)
                      ++|+|+|..||||||++|.+++........  ..++..+......+++  ..+.++||||.....       . +..   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987654432  2234444444455666  778899999943211       1 111   


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-------HHHHHHHHHHcCCc
Q 028237           74 SYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-------TEEGEQFAKEHGLI  144 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  144 (211)
                      ......|++++|+.+.. -+..+  +..++..+.... .-..++||+|..|........       ...+..+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12456889999999983 22222  222222222111 234688999998865433210       11244556666766


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHHH
Q 028237          145 FMEASAK------TAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       145 ~~~~sa~------~g~~v~~~~~~l~~~~~~~  170 (211)
                      |..++..      ....+.+++..+-+.+.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            7767666      2234666666655544443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.49  E-value=5.4e-13  Score=103.31  Aligned_cols=152  Identities=20%  Similarity=0.207  Sum_probs=109.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-------------------------------CCCCCceeEEEEEEEEE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------------------------VHDLTIGVEFGARMITI   50 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   50 (211)
                      +....+|++-+|...-||||||-+|+......                               ..+..+|+++......+
T Consensus         2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF   81 (431)
T COG2895           2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF   81 (431)
T ss_pred             CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence            44567999999999999999999986542100                               11223577777666666


Q ss_pred             CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHH--HHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS--WLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      .-...+|.+-|||||+.|.+.......-+|++|+++|+-..- ++..+.  ++..+..    =+.++|.+||+|+.+..+
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeecccccCH
Confidence            666789999999999999998888899999999999995321 222221  2222221    245788889999988654


Q ss_pred             CCH----HHHHHHHHHcCCc---EEEEecCCCCCHHH
Q 028237          129 VST----EEGEQFAKEHGLI---FMEASAKTAQNVEE  158 (211)
Q Consensus       129 ~~~----~~~~~~~~~~~~~---~~~~sa~~g~~v~~  158 (211)
                      ...    ++...|+.+.++.   ++++||..|+||..
T Consensus       157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            433    4456688888764   99999999998863

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.49  E-value=1.7e-12  Score=115.13  Aligned_cols=145  Identities=27%  Similarity=0.272  Sum_probs=99.8

Q ss_pred             CHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEE----------------EEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237           18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP----------------IKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus        18 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +||||+..+.+..........++.......+..+...                -.+.+|||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999988877666665655555555443210                128999999999999888888999999


Q ss_pred             EEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC----------------HHHHH----H--
Q 028237           82 ALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS----------------TEEGE----Q--  136 (211)
Q Consensus        82 ~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~--  136 (211)
                      +++|+|+++   +++.+.+.    .+..   .+.|+++++||+|+.......                ..++.    .  
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999987   44444332    2222   268999999999985321100                01110    0  


Q ss_pred             --HHH------------Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          137 --FAK------------EH--GLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       137 --~~~------------~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                        +.+            .+  .++++++||++|.|+++++..|......
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence              111            11  3579999999999999999887655443

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.49  E-value=1.2e-12  Score=101.49  Aligned_cols=119  Identities=15%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-------hHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-------TRSYY   76 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~   76 (211)
                      ..++|+|+|.+|+||||++|+|++...... .....+.+.........  ..++.+|||||.......       ...++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            468999999999999999999998765322 22222222222223333  478999999997644221       22222


Q ss_pred             --cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCC
Q 028237           77 --RGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH  125 (211)
Q Consensus        77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~  125 (211)
                        ...|+++||..++.....+.-...+..+....  ..-.+.||++|+.|...
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence              25889999976653211111112233332221  12357899999999754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.48  E-value=2.4e-13  Score=118.24  Aligned_cols=119  Identities=18%  Similarity=0.173  Sum_probs=81.0

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCC---------------CCCC---CCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR---------------FQPV---HDLTIGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      .+...+|+|+|+.++|||||+++|+...               +...   ...+.........+.+++..+++.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            3456799999999999999999997531               1000   011212222222234567789999999999


Q ss_pred             cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +..|......+++.+|++|+|+|+.+....+.. ..+..+.   ..+.|.++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH---HcCCCEEEEEEChhccc
Confidence            999988888899999999999999764322221 1122222   23678899999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.48  E-value=1.2e-12  Score=99.94  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEeCCCcchhh---h-------hh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAGQESFR---S-------IT   72 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~-------~~   72 (211)
                      +..++|+|+|.+|+|||||+|.|++......... ..+..........++  ..+.+|||||.....   .       ..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            4578999999999999999999999765433222 223333332333333  678999999965441   0       12


Q ss_pred             HHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCC
Q 028237           73 RSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH  125 (211)
Q Consensus        73 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~  125 (211)
                      ..++.  ..|++++|..++.......-..+++.+.....  .-.++++|.||+|...
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            22333  56788888766643211111123333332211  1257999999999743

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.48  E-value=1.3e-13  Score=105.22  Aligned_cols=96  Identities=20%  Similarity=0.268  Sum_probs=77.4

Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +++..+.+.+++++|.+++|||+.++. ++..+..|+..+..   .+.|+++|+||+|+.+......+..+.+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            667778888999999999999999887 78889898876543   4799999999999965443333344444 457889


Q ss_pred             EEEEecCCCCCHHHHHHHHHH
Q 028237          145 FMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ++++||++|.|++++|..+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.46  E-value=2.1e-12  Score=103.79  Aligned_cols=86  Identities=19%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF   68 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   68 (211)
                      ...++|+|+|.||+|||||+|.|++........+.++.......+.+.+.               +.++.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            34679999999999999999999988776665566565555555555432               235899999995421


Q ss_pred             ----hhhhHH---hhcCCcEEEEEEECC
Q 028237           69 ----RSITRS---YYRGAAGALLVYDIT   89 (211)
Q Consensus        69 ----~~~~~~---~~~~~d~~i~v~d~~   89 (211)
                          ..+...   .++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                122223   367899999999973

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.3e-12  Score=94.50  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc---CCcEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR---GAAGAL   83 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i   83 (211)
                      -.|+++|+.+||||+|+-+|..+.......   ++......+.+..  -.++++|.||+.+.+.-...++.   ++-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            469999999999999999999874433222   3344444444443  23789999999998876777766   788999


Q ss_pred             EEEECCC-HhhHHHHHH-HHHHHHHh--cCCCCcEEEEEecCCCCCCCC------CCHHHH-------------------
Q 028237           84 LVYDITR-RETFNHLAS-WLEDARQH--ANANMTIMLIGNKCDLAHRRA------VSTEEG-------------------  134 (211)
Q Consensus        84 ~v~d~~~-~~~~~~~~~-~~~~l~~~--~~~~~p~ivv~nK~D~~~~~~------~~~~~~-------------------  134 (211)
                      ||+|..- .....++.+ ++..+...  ...+.|+++.-||.|+.-...      ..+.++                   
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999753 223344444 34444333  246889999999999833110      000111                   


Q ss_pred             ---------H--HHHHH--cCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          135 ---------E--QFAKE--HGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       135 ---------~--~~~~~--~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                               +  +|..-  ..+.+.+.|++++ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                     1  11111  1244788999988 899999998875

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=4.1e-13  Score=102.77  Aligned_cols=172  Identities=18%  Similarity=0.156  Sum_probs=112.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEEEE------------------EC------CEEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMIT------------------ID------NKPIK   56 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~------------------~~------~~~~~   56 (211)
                      +..++|+++|+...|||||.+.|.+-   +++++..+.+++...+....                  +.      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            45789999999999999999999763   22222222222222111110                  01      11367


Q ss_pred             EEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHH
Q 028237           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEG  134 (211)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~  134 (211)
                      +.|.|.||++-.-+.......-.|++++|++++.+..-....+.+.-+.-..  -+.++++-||+|+..++.  .+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8899999999777666666667799999999998443323333232232222  356889999999966432  356777


Q ss_pred             HHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCC
Q 028237          135 EQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE  181 (211)
Q Consensus       135 ~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~  181 (211)
                      .+|.+-.   ++|++++||..+.|++-+++.|.+.    .+.+..+.+.+
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~----IptP~rd~~~~  211 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKY----IPTPERDLDKP  211 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHh----CCCCccCCCCC
Confidence            7787653   6789999999999999888776654    44454444443

>TIGR00101 ureG urease accessory protein UreG

Probab=99.43  E-value=5.5e-12  Score=93.33  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG  134 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (211)
                      ....+.++.|.........   .-+|.+|.|+|+.+.+....  .....+      ...-++++||+|+.+......+.+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            3455677777322222211   12578999999987655321  111111      222389999999975323345554


Q ss_pred             HHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          135 EQFAKE--HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       135 ~~~~~~--~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .+..+.  .+.+++++|+++|.|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            555544  457899999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.42  E-value=6.9e-12  Score=98.57  Aligned_cols=126  Identities=20%  Similarity=0.275  Sum_probs=90.1

Q ss_pred             EEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh----------HHHHHHHHHHHHHhcC-CCCcEEE
Q 028237           48 ITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET----------FNHLASWLEDARQHAN-ANMTIML  116 (211)
Q Consensus        48 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~l~~~~~-~~~p~iv  116 (211)
                      +.+.-+...+.+.|.+|+.....-|.+.+.+++++|||+++++.+.          +.+...++..+..+.+ .+.++|+
T Consensus       188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            3333344889999999999999999999999999999999886332          2223334555555554 6899999


Q ss_pred             EEecCCCCCC--------------C-CCCHHHHHHHHHH--------c--CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          117 IGNKCDLAHR--------------R-AVSTEEGEQFAKE--------H--GLIFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       117 v~nK~D~~~~--------------~-~~~~~~~~~~~~~--------~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      ++||.|+-++              . ....+++..+.+.        .  .+.+..++|.+..+|..+|..+.+.+.+..
T Consensus       268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            9999998321              1 1234444443332        1  233556899999999999999999998876


Q ss_pred             hc
Q 028237          172 QD  173 (211)
Q Consensus       172 ~~  173 (211)
                      .+
T Consensus       348 lk  349 (354)
T KOG0082|consen  348 LK  349 (354)
T ss_pred             HH
Confidence            54

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.41  E-value=8.4e-12  Score=102.65  Aligned_cols=161  Identities=16%  Similarity=0.298  Sum_probs=112.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEeCCCcchhhhhhHHhhcCC----c
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID--NKPIKLQIWDTAGQESFRSITRSYYRGA----A   80 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d   80 (211)
                      -.|+|+|..++||||||.+|.+.   +.+.++.+..|....+.-+  +...++.+|...|...+..+....+...    -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            47999999999999999998754   3445566666666554332  2235789999998777888776665532    2


Q ss_pred             EEEEEEECCCHhhH-HHHHHHHHHH-------------------------HHhcC-------------------------
Q 028237           81 GALLVYDITRRETF-NHLASWLEDA-------------------------RQHAN-------------------------  109 (211)
Q Consensus        81 ~~i~v~d~~~~~~~-~~~~~~~~~l-------------------------~~~~~-------------------------  109 (211)
                      ++|+|+|++.|..+ +.+..|+..+                         +.+.+                         
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            89999999988763 3333333211                         11100                         


Q ss_pred             ------------CCCcEEEEEecCCCCC---CC-C-------CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          110 ------------ANMTIMLIGNKCDLAH---RR-A-------VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       110 ------------~~~p~ivv~nK~D~~~---~~-~-------~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                                  .++|++||.+|.|...   .+ .       .....++.||..+|+.++.+|++...+++.++.+|.+.
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                        1379999999999732   11 1       12334678888999999999999999999999998877


Q ss_pred             HHHH
Q 028237          167 IYKK  170 (211)
Q Consensus       167 ~~~~  170 (211)
                      +...
T Consensus       263 l~~~  266 (472)
T PF05783_consen  263 LYGF  266 (472)
T ss_pred             hccC
Confidence            6543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK13768 GTPase; Provisional

Probab=99.39  E-value=5.1e-12  Score=96.96  Aligned_cols=110  Identities=19%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             EEEEEeCCCcchh---hhhhHHhhcC-----CcEEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           56 KLQIWDTAGQESF---RSITRSYYRG-----AAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        56 ~~~i~D~~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .+.+||+||+.+.   ...+..+++.     .+++++|+|.....+..... .++..+......+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6889999997653   3344333332     78999999996543322221 1211211111247999999999998654


Q ss_pred             CCCCHHHHHH----------------------------HHHHcC--CcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          127 RAVSTEEGEQ----------------------------FAKEHG--LIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .+.  +....                            ..+..+  .+++++|++++.|+++++++|.+.+
T Consensus       178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            221  11111                            122233  4789999999999999999998765

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.1e-11  Score=93.49  Aligned_cols=172  Identities=17%  Similarity=0.201  Sum_probs=105.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCC----CCCC---CCCCceeEEEEEEEEE-------CCEEEEEEEEeCCCcchh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR----FQPV---HDLTIGVEFGARMITI-------DNKPIKLQIWDTAGQESF   68 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~----~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~   68 (211)
                      ....++++++|+..||||||.++|..-.    |+..   ..+..+.+...-...+       .+..+++.+.|+||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            4457899999999999999999996421    2211   1222222222222222       345678899999999987


Q ss_pred             hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCC--CCCCHHH-HHHHHHH---c
Q 028237           69 RSITRSYYRGAAGALLVYDITRRETFNHLASW-LEDARQHANANMTIMLIGNKCDLAHR--RAVSTEE-GEQFAKE---H  141 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~-~~~~~~~---~  141 (211)
                      -+.......-.|..++|+|+......+.++.+ +.++.     -...+||+||+|...+  +....++ ..+..+.   .
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            77666677778999999999875544444433 23332     2346888888887432  2222222 2222222   2


Q ss_pred             ----CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCC
Q 028237          142 ----GLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS  179 (211)
Q Consensus       142 ----~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~  179 (211)
                          +.|++++||..|.--.+-...|.+.+.++.-.+..+..
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~  200 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE  200 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence                36899999999955555555555555555555444433

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.38  E-value=3.4e-11  Score=95.80  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCcchh---
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESF---   68 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~---   68 (211)
                      ++|+|+|.||+|||||+|+|++........+.++.+.....+.+.+..               .++.+.|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999987655555554555555555554421               35899999995421   


Q ss_pred             -hhhhHHh---hcCCcEEEEEEECC
Q 028237           69 -RSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        69 -~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                       ..+...+   ++.+|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             1233333   57899999999974

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=3.6e-12  Score=95.10  Aligned_cols=56  Identities=21%  Similarity=0.145  Sum_probs=42.1

Q ss_pred             CCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       111 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ..|.++++||+|+.+.............+..  .++++++|++++.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5678999999999653322334444444443  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.37  E-value=3.8e-12  Score=112.41  Aligned_cols=118  Identities=19%  Similarity=0.149  Sum_probs=80.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCC----------------CCCCCceeEEEEEEEEE--------------CC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMITI--------------DN   52 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~   52 (211)
                      .+.+.+|+|+|+.++|||||+++|+...-..                +.....++........+              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            4556799999999999999999997643210                00111122211222222              22


Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      ..+.++++||||+..|.......++.+|++|+|+|+...-...... .+..+..   .++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH---CCCCEEEEEECCccc
Confidence            3678999999999999888888899999999999998754332222 2222322   378999999999985

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=5.9e-12  Score=105.55  Aligned_cols=161  Identities=21%  Similarity=0.216  Sum_probs=109.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC----------------EEEEEEEEeCCCcchhhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----------------KPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~   70 (211)
                      .=++|+|+..+|||-|+..+.+..........++..+....+...+                +.--+.++||||++.|..
T Consensus       476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn  555 (1064)
T KOG1144|consen  476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN  555 (1064)
T ss_pred             ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence            4589999999999999999988776665554433333222222211                012367899999999999


Q ss_pred             hhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-------CCC------CCCH---
Q 028237           71 ITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLA-------HRR------AVST---  131 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~-------~~~------~~~~---  131 (211)
                      ++.++...+|.+|+|+|+..   +++.+.       +...+..+.|+||.+||+|..       +..      ....   
T Consensus       556 lRsrgsslC~~aIlvvdImhGlepqtiES-------i~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~  628 (1064)
T KOG1144|consen  556 LRSRGSSLCDLAILVVDIMHGLEPQTIES-------INLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ  628 (1064)
T ss_pred             hhhccccccceEEEEeehhccCCcchhHH-------HHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence            99999999999999999976   433332       222233489999999999952       100      0000   


Q ss_pred             HH--------HHHHHHH-cC-------------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Q 028237          132 EE--------GEQFAKE-HG-------------LIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       132 ~~--------~~~~~~~-~~-------------~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~  174 (211)
                      .+        +.+|++. ++             +.++++||..|+||.+|+.+|+++.+..+...
T Consensus       629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            00        1112211 11             24788999999999999999999988876654

>PTZ00416 elongation factor 2; Provisional

Probab=99.35  E-value=6.4e-12  Score=110.86  Aligned_cols=117  Identities=22%  Similarity=0.225  Sum_probs=79.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC----------------CCCCCceeEEEEEEEEEC--------CEEEEEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMITID--------NKPIKLQI   59 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i   59 (211)
                      +...+|+|+|+.++|||||+++|+...-..                +.....++........+.        +..+.+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            445699999999999999999998632110                001111111111222232        22578999


Q ss_pred             EeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      +||||+..|.......++.+|++|+|+|+.+.-.... ...+..+..   .+.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            9999999998888888999999999999987433222 223333333   368999999999985

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.34  E-value=3.8e-11  Score=104.85  Aligned_cols=117  Identities=19%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC----------------CCCceeEEEEEEE--EECCEEEEEEEEeCCCc
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMI--TIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~   65 (211)
                      +..-+|+|+|+.++|||||+.+|+...-....                ....++......+  .+.+.++.++++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            44568999999999999999999753211100                0001111111122  23445788999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      ..|.......++.+|++|+|+|....-.... ...+......   +.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc---CCCeEEEEECchhh
Confidence            9998888888999999999999876433222 2222222222   56889999999975

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.33  E-value=2.5e-11  Score=82.82  Aligned_cols=114  Identities=31%  Similarity=0.418  Sum_probs=81.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+++..+.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999998777654443 3322                           233344567788999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      ++.++..+++.+  |...+........|.++++||.|+.+......++..        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999988765  766665554457889999999998443333333332        34567788888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.33  E-value=2.6e-11  Score=95.74  Aligned_cols=111  Identities=12%  Similarity=0.048  Sum_probs=70.8

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CH
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--ST  131 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~  131 (211)
                      .+.+.|.||+|.......   ....+|.+++|.+....+.+..+.   ..+...     .-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----ADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----hheEEeehhcccchhHHHHHH
Confidence            467899999997633322   466799999997755444443322   212222     23899999998653211  12


Q ss_pred             HHHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCc
Q 028237          132 EEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  175 (211)
Q Consensus       132 ~~~~~~~~~-------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~  175 (211)
                      .++......       +..+++.+|+.++.|++++++.|.+.+....+.+.
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~  267 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGE  267 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCCh
Confidence            223322222       23579999999999999999999987765544443

>cd01882 BMS1 Bms1

Probab=99.32  E-value=5.5e-11  Score=89.78  Aligned_cols=137  Identities=15%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      ...|+|+|++|+|||||++.+.............+. +   .+ ......++.++|+||.-  .. .....+.+|++++|
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEE
Confidence            467999999999999999999865222111111121 1   11 11245678899999854  22 22346889999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCCCHHH----HHH-HHHH--cCCcEEEEecCCCCC
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVSTEE----GEQ-FAKE--HGLIFMEASAKTAQN  155 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~----~~~-~~~~--~~~~~~~~sa~~g~~  155 (211)
                      +|......... ..++..+..   .+.|.+ +++||+|+.+... ..++    ++. +..+  .+.+++.+||+++..
T Consensus       111 iDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~-~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         111 IDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNK-TLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHH-HHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            99976443222 223333332   257754 5999999864221 1122    222 2222  245799999998843

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.32  E-value=2.2e-11  Score=96.96  Aligned_cols=156  Identities=11%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC---ceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh-----h
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY-----Y   76 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~   76 (211)
                      ..++|+|+|.+|+|||||||.|.+-...+.....   +.++.....+..... -.+.+||.||......-...|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4689999999999999999999864333222222   122333333333322 258899999954332223333     4


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CC-----CCCCC----HHHHHHHHHH----c
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL--AH-----RRAVS----TEEGEQFAKE----H  141 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~--~~-----~~~~~----~~~~~~~~~~----~  141 (211)
                      ..-|.+|++.+-.=.+.  + ..+...+...   ++|+++|-+|+|.  .+     ....+    .+++++.+.+    .
T Consensus       113 ~~yD~fiii~s~rf~~n--d-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISSERFTEN--D-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEESSS--HH--H-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeCCCCchh--h-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            55677777666432221  1 1222333333   8999999999995  11     11222    2333443332    2


Q ss_pred             CC---cEEEEecCCCC--CHHHHHHHHHHHH
Q 028237          142 GL---IFMEASAKTAQ--NVEEAFIKTAATI  167 (211)
Q Consensus       142 ~~---~~~~~sa~~g~--~v~~~~~~l~~~~  167 (211)
                      ++   ++|.+|..+-.  ++..+.+.|.+.+
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence            43   48899988764  3555665555444

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.31  E-value=6.4e-11  Score=97.19  Aligned_cols=159  Identities=21%  Similarity=0.293  Sum_probs=119.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++..|+|+.++|||.|++.|++..+......+....+....+...+....+.+-|.+-. ....+...- ..+|++.+
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            4678999999999999999999999988877777777887788877777778888888764 222222222 67899999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~~~~~l  163 (211)
                      +||.+++.++......++.-...  .+.|+++|++|+|+.+..+...-+-.+++++.+++ .+.+|...... .++|..|
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL  578 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL  578 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence            99999999998877765443222  48999999999999665433222227899999986 45566554333 8888888


Q ss_pred             HHHHH
Q 028237          164 AATIY  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      ..+..
T Consensus       579 ~~~A~  583 (625)
T KOG1707|consen  579 ATMAQ  583 (625)
T ss_pred             HHhhh
Confidence            77654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.31  E-value=2.4e-10  Score=91.31  Aligned_cols=141  Identities=15%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC----CCCC----------CCCCCce---eEEE-------EEEEEE-CCEEEEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK----RFQP----------VHDLTIG---VEFG-------ARMITI-DNKPIKLQIW   60 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~----~~~~----------~~~~~~~---~~~~-------~~~~~~-~~~~~~~~i~   60 (211)
                      .+.|+|+|+.++|||||||+|.+.    ....          -+....|   ++..       ...+.. ++...++.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            578999999999999999999887    2220          0111112   1111       222322 4556789999


Q ss_pred             eCCCcchhhh-------h----------------------hHHhhc-CCcEEEEEE-ECC--C---HhhHHHHHHHHHHH
Q 028237           61 DTAGQESFRS-------I----------------------TRSYYR-GAAGALLVY-DIT--R---RETFNHLASWLEDA  104 (211)
Q Consensus        61 D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~--~---~~~~~~~~~~~~~l  104 (211)
                      ||+|...-.+       -                      .+..+. ++|..|+|. |.+  +   ....+.-..++.++
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9999421111       0                      233344 889888888 663  1   11222233455555


Q ss_pred             HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237          105 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  151 (211)
Q Consensus       105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (211)
                      ...   ++|+++++|+.|....  ...+....+...++++++.+|..
T Consensus       177 k~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~  218 (492)
T TIGR02836       177 KEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE  218 (492)
T ss_pred             Hhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence            544   8999999999995321  24444556667778887777654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=6.7e-11  Score=101.42  Aligned_cols=119  Identities=19%  Similarity=0.186  Sum_probs=87.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-----C-----------CCCceeEEEEEEEEECCE-EEEEEEEeCCCc
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----H-----------DLTIGVEFGARMITIDNK-PIKLQIWDTAGQ   65 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~   65 (211)
                      .+..-+|+|+|+-.+|||||..+++...-...     .           ...-|++.....+.+..+ ++.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            45677999999999999999999865321111     0           011256666666666555 599999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      -.|.......++-.|++++|+|+...-..+.-..| .....   .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~---~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADK---YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhh---cCCCeEEEEECccccc
Confidence            99999999999999999999999874433332233 22233   3899999999999754

>cd01900 YchF YchF subfamily

Probab=99.29  E-value=9.2e-11  Score=90.45  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=58.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh----h
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF----R   69 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~----~   69 (211)
                      |+|+|.|++|||||+|+|++........+.++.......+.+.+.               ...+.++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            589999999999999999998876655565565665555655542               235899999995421    2


Q ss_pred             hhhHHh---hcCCcEEEEEEECC
Q 028237           70 SITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        70 ~~~~~~---~~~~d~~i~v~d~~   89 (211)
                      .+...+   ++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            233333   56799999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.28  E-value=1.1e-11  Score=93.07  Aligned_cols=119  Identities=16%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             EEEEEEEeCCCcchh------hhhhHHhhcC--CcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           54 PIKLQIWDTAGQESF------RSITRSYYRG--AAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~------~~~~~~~~~~--~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      .+...++||||+-+.      ..++...+..  ..++++|+|..+..+ .-.+..++--+.-....+.|+|+++||.|+.
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~  194 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS  194 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence            366899999997432      2333333333  347777777643221 1112222222222223489999999999996


Q ss_pred             CCCCCC--HHHHHHH---HH---------------------HcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          125 HRRAVS--TEEGEQF---AK---------------------EHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       125 ~~~~~~--~~~~~~~---~~---------------------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      +.....  ..+.+.|   .+                     -.++..+.+|+.+|.|.+++|..+-+.+.+...
T Consensus       195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence            532100  0001111   11                     014568899999999999999988877766533

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.28  E-value=1e-10  Score=84.36  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=44.5

Q ss_pred             EEEEEeCCCcch----hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237           56 KLQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC  121 (211)
Q Consensus        56 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~  121 (211)
                      .+.|+|+||...    ...++..|++.+|++|+|.++....+......+.+.....   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            378999999643    3467888899999999999999866555444444443333   44589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.8e-11  Score=99.30  Aligned_cols=153  Identities=20%  Similarity=0.215  Sum_probs=103.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCC--------------------C---------CCCCCCCceeEEEEEEEEECCEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKR--------------------F---------QPVHDLTIGVEFGARMITIDNKPI   55 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~--------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..+.++++|+..+|||||+.+|+..-                    .         .....+.-|++.......++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            36789999999999999999985321                    0         011222336666666777777778


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh---hHHH---HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNH---LASWLEDARQHANANMTIMLIGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~---~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  129 (211)
                      .++|.|+||+..|..........+|++++|+|++-.+   .++.   +... ..+.+... -..+||.+||+|+.+-.+.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccCccHH
Confidence            9999999999999888888889999999999997422   1111   1111 22222222 4568999999999763322


Q ss_pred             CHHH----HHHHH-HHcC-----CcEEEEecCCCCCHHHH
Q 028237          130 STEE----GEQFA-KEHG-----LIFMEASAKTAQNVEEA  159 (211)
Q Consensus       130 ~~~~----~~~~~-~~~~-----~~~~~~sa~~g~~v~~~  159 (211)
                      ..++    +..|. +..|     +.++++|+..|+|+...
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            2222    33444 4444     45999999999987643

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.26  E-value=1e-10  Score=84.05  Aligned_cols=55  Identities=24%  Similarity=0.126  Sum_probs=45.9

Q ss_pred             cEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       113 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .-++|+||.|+...-..+.+...+-+++.  +.+++++|+++|+|++++++|+..+.
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            35899999999887777778777777765  47899999999999999999987653

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.26  E-value=9.1e-12  Score=91.28  Aligned_cols=145  Identities=20%  Similarity=0.299  Sum_probs=87.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----hhHHhhcCCc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----ITRSYYRGAA   80 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d   80 (211)
                      -||+++|..|||||++=-.+..+... +...++.++++.--.+.+-| ..-+.+||.+|++.+-.     .....+++++
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            48999999999999953333322211 22222222333322333333 47789999999985532     4556789999


Q ss_pred             EEEEEEECCCHhhHHHHHH---HHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCH----HHHHHHHHHcCCcEEEEecC
Q 028237           81 GALLVYDITRRETFNHLAS---WLEDARQHANANMTIMLIGNKCDLAHRRA--VST----EEGEQFAKEHGLIFMEASAK  151 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~---~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~sa~  151 (211)
                      ++|+|||+...+-..++..   .++.+.++. +...+..+++|+|+.....  ...    +..+.+....++.++++|.+
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            9999999987664444443   334444443 4677888899999965322  111    22233333344567888877


Q ss_pred             CC
Q 028237          152 TA  153 (211)
Q Consensus       152 ~g  153 (211)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            64

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.24  E-value=1.4e-11  Score=93.53  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             EEEEEeCCCcchhhhhhHHhh--------cCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .+.|+|||||-++...+....        ...-++++++|...... ...+..++..+......+.|.+.++||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            688999999987765444433        33458899999764332 122222222222222238999999999999652


Q ss_pred             CC-------------------CCHHHHHHHHHHc---C-C-cEEEEecCCCCCHHHHHHHHHHHH
Q 028237          127 RA-------------------VSTEEGEQFAKEH---G-L-IFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       127 ~~-------------------~~~~~~~~~~~~~---~-~-~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ..                   ......+.+++-.   + . .++.+|+.+++++.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10                   0011111222221   2 3 699999999999999999876643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=2.6e-10  Score=86.70  Aligned_cols=170  Identities=18%  Similarity=0.176  Sum_probs=109.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCC-------------C-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-------------Q-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+.+|+...|||||...++..-.             + .-....-|+++....+.++-...++-..|+||+..|-.
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence            368999999999999999988753210             0 11112236777777777766678888999999999987


Q ss_pred             hhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCCCC---CHHHHHHHHHHcCC
Q 028237           71 ITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRRAV---STEEGEQFAKEHGL  143 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~  143 (211)
                      .......+.|+.|+|++++|   |++-+++..    .++   -+.|. ++++||+|+.+..+.   -..+++.+...+++
T Consensus        91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLl----arq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPMPQTREHILL----ARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCCCcchhhhhh----hhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            77777788999999999987   444333211    112   26764 556699999763322   13446677777765


Q ss_pred             -----cEEEEecCCCC-C---HHHHHHHHHHHHHHHHhcCcccCCCC
Q 028237          144 -----IFMEASAKTAQ-N---VEEAFIKTAATIYKKIQDGVFDVSNE  181 (211)
Q Consensus       144 -----~~~~~sa~~g~-~---v~~~~~~l~~~~~~~~~~~~~~~~~~  181 (211)
                           |++.-||..-. +   -.+....|.+.+.+..+.+..+..++
T Consensus       164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkP  210 (394)
T COG0050         164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKP  210 (394)
T ss_pred             CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCccccc
Confidence                 47777765331 2   22333444555555566665555443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.21  E-value=6.2e-11  Score=96.59  Aligned_cols=160  Identities=18%  Similarity=0.353  Sum_probs=121.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+|++|+|..++|||+|+++++.+.+.....+. +-.+ .+++.+++..+.+.+.|.+|..     ...|...+|++|||
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv  102 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV  102 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCCc-Cccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence            479999999999999999999988887666655 4444 4556677778889999988844     34577889999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCC--CCCCCHHHHHH-HHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH--RRAVSTEEGEQ-FAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~-~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      |.+.+..+++.+..+...+..+.. ...|+++++++.-...  .+.+..+..++ .++...+.+|++++.+|.++..+|.
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~  182 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ  182 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence            999999999988887776654443 4677888777654321  22333444444 4455567899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      .++.++.....
T Consensus       183 ~~~~k~i~~~~  193 (749)
T KOG0705|consen  183 EVAQKIVQLRK  193 (749)
T ss_pred             HHHHHHHHHHh
Confidence            99988877644

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.20  E-value=2e-10  Score=90.46  Aligned_cols=104  Identities=13%  Similarity=0.043  Sum_probs=64.2

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--  131 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--  131 (211)
                      .+.+.|.||+|.....   ......+|.++++......   +++......+     .++|.++++||+|+........  
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4778899999854222   2346677888877544322   3333333222     2577899999999864321110  


Q ss_pred             H----HHHHHHH---HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          132 E----EGEQFAK---EHGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       132 ~----~~~~~~~---~~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      .    ....+..   .+..+++.+|++++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            0    0011111   12346999999999999999999988644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.20  E-value=4.3e-11  Score=91.97  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=104.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--------hhhhHHhhcC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RSITRSYYRG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~   78 (211)
                      .-|.|+|..||||||||+.|+.........-+-+.+......+... ...+.+.||.|.-.-        ......-...
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLeeVae  257 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE  257 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence            4689999999999999999996655444444434444444454443 356778899994321        1223333567


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc----EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMT----IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~  154 (211)
                      +|.++.|.|+++|...+.....+..+....-...|    ++=|-||+|+......        .+.+  ..+.+|+.+|.
T Consensus       258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n--~~v~isaltgd  327 (410)
T KOG0410|consen  258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKN--LDVGISALTGD  327 (410)
T ss_pred             cceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccC--CccccccccCc
Confidence            89999999999998776666666666555333333    3445577776432111        1112  26789999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcC
Q 028237          155 NVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~~~~~  174 (211)
                      |++++...+-.++.....-.
T Consensus       328 gl~el~~a~~~kv~~~t~~~  347 (410)
T KOG0410|consen  328 GLEELLKAEETKVASETTVD  347 (410)
T ss_pred             cHHHHHHHHHHHhhhhheee
Confidence            99999999888877765443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.19  E-value=1.2e-09  Score=92.12  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=72.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hh---hH
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SI---TR   73 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~   73 (211)
                      ..++|+|+|.+|+||||++|.|++....... ....++..........+  ..+.++||||.....       .+   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            4579999999999999999999997644332 22223333222233343  678999999965421       11   22


Q ss_pred             Hhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCC
Q 028237           74 SYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH  125 (211)
Q Consensus        74 ~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~  125 (211)
                      .++.  .+|++|+|..++.......-..++..+.....  .-..+|||+|+.|..+
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  47899999987643221111233333433222  2356899999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.18  E-value=1.4e-09  Score=84.47  Aligned_cols=141  Identities=15%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC----------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------   68 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------   68 (211)
                      ..++|+|+|..|+|||||||.|++.......          ..+..+......+.-++..+.+.++||||....      
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999886543332          122233333334444678899999999993211      


Q ss_pred             -hhhh-------HHh-------------hcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           69 -RSIT-------RSY-------------YRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        69 -~~~~-------~~~-------------~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                       ..+.       ..+             =.++|++++.++++... .-.+    +..|.... ..+++|-|+.|.|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D----i~~mk~Ls-~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD----IEFMKRLS-KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH----HHHHHHHT-TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH----HHHHHHhc-ccccEEeEEecccccCH
Confidence             0000       001             02467999999987532 1111    22233322 36889999999997442


Q ss_pred             CCC--CHHHHHHHHHHcCCcEEEEec
Q 028237          127 RAV--STEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus       127 ~~~--~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      .+.  ....+..-.+..+++++....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHcCceeecccc
Confidence            211  123344555667787665443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.18  E-value=1e-09  Score=89.59  Aligned_cols=115  Identities=18%  Similarity=0.248  Sum_probs=81.2

Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh----------hHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLASWLEDARQHAN-ANMTIMLIGNKC  121 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~  121 (211)
                      ....+.++|++|+...+.-|.+++.+++++|||+++.+-+          .+.+...++..+..... .+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            3478999999999999999999999999999999986422          24444445555544443 689999999999


Q ss_pred             CCCC-----C-----------C--CCCHHHHHHHHHHc------------CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          122 DLAH-----R-----------R--AVSTEEGEQFAKEH------------GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       122 D~~~-----~-----------~--~~~~~~~~~~~~~~------------~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      |+-.     .           .  ..+.+.+..+....            .+.+..++|.+..++..+|..+.+.|
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9621     0           0  13445555555432            12355899999999999998887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>smart00053 DYNc Dynamin, GTPase

Probab=99.17  E-value=6.5e-10  Score=84.14  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCcch-------------hhhhhHHhhcCC-cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237           55 IKLQIWDTAGQES-------------FRSITRSYYRGA-AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK  120 (211)
Q Consensus        55 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK  120 (211)
                      ..+.++|+||...             ...+...|+++. +++++|+|+...-.......+...+.   ..+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            5688999999642             123566677754 58899998764322222222222232   247899999999


Q ss_pred             CCCCCC
Q 028237          121 CDLAHR  126 (211)
Q Consensus       121 ~D~~~~  126 (211)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=2.4e-09  Score=84.39  Aligned_cols=84  Identities=19%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC----------------EEEEEEEEeCCCcc---
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----------------KPIKLQIWDTAGQE---   66 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~---   66 (211)
                      .++++|+|.||+|||||.|.++.........|.++++...-.+.+..                ....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            36899999999999999999999887666666667766665555432                13568899999843   


Q ss_pred             -hhhhhhHHh---hcCCcEEEEEEECC
Q 028237           67 -SFRSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        67 -~~~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                       .-..+...|   ++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             233455555   67899999999965

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=6.4e-10  Score=88.72  Aligned_cols=116  Identities=20%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCC--------------------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      -..+|+-+|.+|||||-..|+.-.-....                    ...-|+....-..+++..+..++|.|||||+
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            45789999999999999997532110000                    0012555556666666667899999999999


Q ss_pred             hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .|..-.-+.+-.+|..++|+|+...-.. ...++++.++-   .+.|++=++||+|...+
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcrl---R~iPI~TFiNKlDR~~r  148 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCRL---RDIPIFTFINKLDREGR  148 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHhh---cCCceEEEeeccccccC
Confidence            9998888888999999999998752211 12333344332   38999999999997543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=6.9e-10  Score=88.73  Aligned_cols=153  Identities=18%  Similarity=0.087  Sum_probs=105.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      -|+..|+-..|||||++.+++..-   ++.....++.+....  ..+..+..+.+.|.||++++-......+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~--y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFY--YRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeE--eccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            478899999999999999987543   334444444444433  334344588999999999998888888889999999


Q ss_pred             EEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           85 VYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        85 v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      |++.++   +++.+.+.-    +...  .-...++++||+|..+....  ...++.......+.+++.+|+.+|.|++++
T Consensus        80 vV~~deGl~~qtgEhL~i----Ldll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L  153 (447)
T COG3276          80 VVAADEGLMAQTGEHLLI----LDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL  153 (447)
T ss_pred             EEeCccCcchhhHHHHHH----HHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence            999965   444333222    2221  13345999999998653211  112222222233567999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          160 FIKTAATIY  168 (211)
Q Consensus       160 ~~~l~~~~~  168 (211)
                      -+.|.+...
T Consensus       154 k~~l~~L~~  162 (447)
T COG3276         154 KNELIDLLE  162 (447)
T ss_pred             HHHHHHhhh
Confidence            999999884

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3.7e-10  Score=83.60  Aligned_cols=163  Identities=19%  Similarity=0.203  Sum_probs=101.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh---hhHHhhcCCcEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL   83 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i   83 (211)
                      .+|++||...|||||+.+.......+.+...--.+.. ...-++.+.-+.+.+||.||+-.+..   -....++.+-++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5799999999999998877766654433222111111 11112233457899999999765433   2445688999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHH-hc-CCCCcEEEEEecCCCCCCCC--CCHHHHH-----HHH----HHcCCcEEEEec
Q 028237           84 LVYDITRRETFNHLASWLEDARQ-HA-NANMTIMLIGNKCDLAHRRA--VSTEEGE-----QFA----KEHGLIFMEASA  150 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~-~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~-----~~~----~~~~~~~~~~sa  150 (211)
                      ||+|..+.. .+.+..+...+.+ +. .+++.+=|++.|.|-...+.  .....+.     .++    ....+.++.+|.
T Consensus       107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            999997643 3344443333322 22 37889999999999644221  1111111     111    112234777777


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 028237          151 KTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      .+ ..+.|.|..+++++..+++
T Consensus       186 yD-HSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhch
Confidence            66 4799999999999988765

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=8e-10  Score=92.14  Aligned_cols=117  Identities=19%  Similarity=0.257  Sum_probs=84.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----------------CceeEEEEEEEE---ECCEEEEEEEEeC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------TIGVEFGARMIT---IDNKPIKLQIWDT   62 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~   62 (211)
                      .+...+|+++|+-++|||+|+..|.....+.....                 .+++.-...++.   .+++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            56778999999999999999999977654433111                 112222222222   2567788999999


Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL  123 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  123 (211)
                      ||+-.|.......++.+|++++|+|+.+.-.+.. ...+...   ...+.|+++|+||+|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHH
Confidence            9999999999999999999999999987554333 2222222   2247899999999996

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.10  E-value=6.3e-11  Score=91.42  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             CCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       111 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ..+-++|+||+|+........+...+..+..  +++++++|+++|.|++++++||.++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3556999999999653322344444444433  5779999999999999999999874

>cd01855 YqeH YqeH

Probab=99.09  E-value=1.2e-09  Score=80.50  Aligned_cols=94  Identities=22%  Similarity=0.156  Sum_probs=66.5

Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcC
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHG  142 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  142 (211)
                      +..++..+++++|++++|+|+.++...     |...+... ..+.|+++|+||+|+.... ........+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence            577888999999999999999875421     11222111 2368999999999986532 2333344443     2333


Q ss_pred             C---cEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          143 L---IFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       143 ~---~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      .   +++++||+++.|++++++.|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   5899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.09  E-value=4.9e-10  Score=79.86  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=65.8

Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME  147 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      +..+.+++.+++|++|+|+|+.++..... ..+...+.   ..+.|+++++||+|+.+...  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            46678889999999999999987653222 11222221   23689999999999853211  11122333445678999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999877654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.07  E-value=2.9e-09  Score=83.49  Aligned_cols=163  Identities=13%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh---h
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---S   70 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---~   70 (211)
                      ...+.|+++|+.|.|||||+|.|++......          ..+++.+..+...+.-++..+.++++||||...+-   .
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4578999999999999999999988733222          22333444444445556777889999999942210   0


Q ss_pred             -----------hhHHh-------h-------cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           71 -----------ITRSY-------Y-------RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        71 -----------~~~~~-------~-------~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                                 ....|       .       .++|++++.+.++.-. +..+.  +..|.... ..+.+|-|+.|.|...
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~D--Ie~Mk~ls-~~vNlIPVI~KaD~lT  176 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLD--IEAMKRLS-KRVNLIPVIAKADTLT  176 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHH--HHHHHHHh-cccCeeeeeeccccCC
Confidence                       11111       1       1467999999877532 11111  11222222 3577899999999844


Q ss_pred             CCC--CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          126 RRA--VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       126 ~~~--~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      ..+  ...+.+.+....+++++|.  ..+.+.-..-.....+.+....|
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P  223 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP  223 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence            322  2234566677788899884  34544433233333444444444

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.05  E-value=1.2e-08  Score=76.25  Aligned_cols=86  Identities=23%  Similarity=0.186  Sum_probs=63.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhcC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRG   78 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~   78 (211)
                      .-||+++|.|.+|||||+-.++............+.++.+-.+.+++  ..+++.|.||.-+-.       +......+-
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            35899999999999999999987655443334447777777788877  678888999943221       223345678


Q ss_pred             CcEEEEEEECCCHhh
Q 028237           79 AAGALLVYDITRRET   93 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~   93 (211)
                      +|.+++|.|++..+.
T Consensus       140 aDlilMvLDatk~e~  154 (364)
T KOG1486|consen  140 ADLILMVLDATKSED  154 (364)
T ss_pred             ccEEEEEecCCcchh
Confidence            999999999986543

>PRK12289 GTPase RsgA; Reviewed

Probab=99.04  E-value=7.3e-10  Score=88.53  Aligned_cols=92  Identities=20%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             hhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028237           69 RSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFME  147 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      ..+.+..+.++|.+++|+|+.++. ....+..|+....   ..+.|+++|+||+|+....+  ..........++++++.
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence            345556689999999999998765 3444556655442   24799999999999953211  12223334567888999


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~  165 (211)
                      +||.++.|+++++..|..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999998854

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.99  E-value=2e-09  Score=81.26  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=95.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (211)
                      +..++++++|..++|||+|+|.++.......... ..+.+.....+.+..   ++.+.|.||          ...+..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence            4568999999999999999999987654432222 445555544455544   778999999          23445566


Q ss_pred             HHhhcCCc---EEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-----------CCHHHHHH
Q 028237           73 RSYYRGAA---GALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-----------VSTEEGEQ  136 (211)
Q Consensus        73 ~~~~~~~d---~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~  136 (211)
                      ..|+.+.+   .+++++|++-+-.  -.....|+.+      .++|+.+|+||+|..-...           ++....-+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            66655444   5555666554221  1112233332      3899999999999732110           11111112


Q ss_pred             HHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237          137 FAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus       137 ~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      -......|.+.+|+.++.|.++++-.|.+
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhh
Confidence            22223356778999999999998877654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.99  E-value=2.1e-09  Score=85.85  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~g~  154 (211)
                      ..++|.+++|+++....++..+..|+.....   .++|+++|+||+|+.+..+ ..........+..+++++++||.++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888888888888765432   3789999999999964321 11122333445678899999999999


Q ss_pred             CHHHHHHHHHH
Q 028237          155 NVEEAFIKTAA  165 (211)
Q Consensus       155 ~v~~~~~~l~~  165 (211)
                      |+++++..|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=7.5e-09  Score=81.71  Aligned_cols=164  Identities=16%  Similarity=0.228  Sum_probs=98.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC---------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------   68 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------   68 (211)
                      ...+.++++|..|.|||||||.|+...+...         ...+.........+.-++..+.+++.||||....      
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3468999999999999999999987644322         2223333443444444667788899999993211      


Q ss_pred             ------------hh-------hhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           69 ------------RS-------ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        69 ------------~~-------~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                                  ..       +.+.-+.  ++|++++.+.++.-. +..+.  +..+... ...+++|-|+.|.|.....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~D--i~~Mk~l-~~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLD--IEFMKKL-SKKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhh--HHHHHHH-hccccccceeeccccCCHH
Confidence                        00       1111122  578999999877532 11111  1222222 2367889999999975432


Q ss_pred             CC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Q 028237          128 AV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~  174 (211)
                      +.  ....+.+-+..+++++|....-..   ++.+....+.+....|-.
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~PFA  220 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIPFA  220 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCCeE
Confidence            22  234456667778888776665544   555555566666655543

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.97  E-value=1.9e-09  Score=80.76  Aligned_cols=118  Identities=13%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCC
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGNKCD  122 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D  122 (211)
                      .++++++|.+|+...+.-|...+..+.++|||...+.          ...+++...++..+..+.+ ..+.+|+++||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            4779999999999999999999999999999998764          2224444445555555554 5688999999999


Q ss_pred             CCCCC----------------------------CCCH--HHHHHHHHHc-------------CCcEEEEecCCCCCHHHH
Q 028237          123 LAHRR----------------------------AVST--EEGEQFAKEH-------------GLIFMEASAKTAQNVEEA  159 (211)
Q Consensus       123 ~~~~~----------------------------~~~~--~~~~~~~~~~-------------~~~~~~~sa~~g~~v~~~  159 (211)
                      +..+.                            ....  .....|.+..             .+..-.++|.+.+++..+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            84310                            0111  0111122211             123445889999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          160 FIKTAATIYKKI  171 (211)
Q Consensus       160 ~~~l~~~~~~~~  171 (211)
                      |....+.|+...
T Consensus       361 FnDcrdiIqr~h  372 (379)
T KOG0099|consen  361 FNDCRDIIQRMH  372 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            999777666543

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=3.6e-10  Score=86.36  Aligned_cols=161  Identities=20%  Similarity=0.213  Sum_probs=106.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhC---CCCCCCCCCceeEEEEEE---EEECC----------------------
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARM---ITIDN----------------------   52 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~---~~~~~----------------------   52 (211)
                      |+++.+++|+-+|+...||||+++.+.+-   +|..+-.+.+++......   +.+++                      
T Consensus        33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c  112 (466)
T KOG0466|consen   33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC  112 (466)
T ss_pred             hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence            56788999999999999999999888543   222222222222111111   11110                      


Q ss_pred             ----------EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 028237           53 ----------KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLASWLEDARQHANANMTIMLIG  118 (211)
Q Consensus        53 ----------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~l~~~~~~~~p~ivv~  118 (211)
                                -..++.+.|+||++..-+.......-.|++++++..+.    |++.+++... +. ..    =+.++++-
T Consensus       113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-ei-M~----LkhiiilQ  186 (466)
T KOG0466|consen  113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EI-MK----LKHIIILQ  186 (466)
T ss_pred             ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HH-hh----hceEEEEe
Confidence                      12568899999999876655555666788888888776    4444444332 11 11    24578899


Q ss_pred             ecCCCCCCCC--CCHHHHHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          119 NKCDLAHRRA--VSTEEGEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       119 nK~D~~~~~~--~~~~~~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ||+|+..+.+  ...+++..|.+..   ++|++++||.-..|++-+.++|+.++
T Consensus       187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            9999965443  2356677777765   56899999999999999988887765

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.95  E-value=1.8e-09  Score=82.60  Aligned_cols=111  Identities=15%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE  133 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (211)
                      .+.+.|++|.|--...   -.....+|.+++|.-..-.+..+.+..   -+.+..     -++++||.|....+ ....+
T Consensus       143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~A~-~a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKGAE-KAARE  210 (323)
T ss_pred             CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhhHH-HHHHH
Confidence            3668888888743332   224556898888887765555444333   233333     38999999964321 11111


Q ss_pred             HHH---HH----HH--cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 028237          134 GEQ---FA----KE--HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  176 (211)
Q Consensus       134 ~~~---~~----~~--~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~  176 (211)
                      ...   +.    ..  |..+++.+||.+|+|++++++.+.+........+.+
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~  262 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF  262 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence            111   11    11  234699999999999999999998887777666544

>PRK00098 GTPase RsgA; Reviewed

Probab=98.91  E-value=5.3e-09  Score=82.25  Aligned_cols=85  Identities=20%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             hhcCCcEEEEEEECCCHhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           75 YYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      .+.++|.+++|+|+.++..... +..|+..+..   .++|+++|+||+|+.+... .........+..+++++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988765443 4556555433   3789999999999853211 122334455667889999999999


Q ss_pred             CCHHHHHHHH
Q 028237          154 QNVEEAFIKT  163 (211)
Q Consensus       154 ~~v~~~~~~l  163 (211)
                      .|+++++..+
T Consensus       153 ~gi~~L~~~l  162 (298)
T PRK00098        153 EGLDELKPLL  162 (298)
T ss_pred             ccHHHHHhhc
Confidence            9999999876

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.91  E-value=3.4e-09  Score=78.12  Aligned_cols=122  Identities=16%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEEEEEe
Q 028237           51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIMLIGN  119 (211)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~ivv~n  119 (211)
                      +-....+.+.|.+|+.....-|.+.++++..++|++.++.          ...+++...++..+..+.+ .+.++|+++|
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN  274 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  274 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence            3344667799999999999999999999998888877653          4445555566666766766 7899999999


Q ss_pred             cCCCCCCC----------------CCCHHHHHHHHHHc----CC------cEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          120 KCDLAHRR----------------AVSTEEGEQFAKEH----GL------IFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       120 K~D~~~~~----------------~~~~~~~~~~~~~~----~~------~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      |.|+.++.                ..+..-.++|+.+.    +.      .--.++|.+.+|+.-+|..+.+.+.+...
T Consensus       275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            99986532                12223344444332    21      12358899999999999999999887654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.90  E-value=1.3e-09  Score=82.16  Aligned_cols=158  Identities=15%  Similarity=0.088  Sum_probs=87.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCC-----------CCCCCCC---------------ceeEEEEEEEEECCE-----
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------QPVHDLT---------------IGVEFGARMITIDNK-----   53 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~-----   53 (211)
                      ..+.|+|-|+||+|||||++.|...-.           ++....+               .....+.+..-.++.     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            357899999999999999999843210           0110000               012222333333221     


Q ss_pred             -------------EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237           54 -------------PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK  120 (211)
Q Consensus        54 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK  120 (211)
                                   .+.+.|.+|.|--...   ......+|.+++|+.+.-.+..+.+..=   +.+..     -++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEia-----Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAG---IMEIA-----DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhh---hhhhc-----cEEEEeC
Confidence                         3667788887632222   1246678999999988765543333322   22222     3899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Q 028237          121 CDLAHRRAVSTEEGEQFAKE-------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       121 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~  174 (211)
                      .|....+ ....+++.....       |..|++.+||.++.|++++++.|.+........+
T Consensus       177 aD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg  236 (266)
T PF03308_consen  177 ADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESG  236 (266)
T ss_dssp             -SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence            9964321 122233333221       2347999999999999999999887665554443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.86  E-value=1.3e-08  Score=79.55  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             HHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237           73 RSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (211)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+..  .......+....+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            34588999999999999887 77777777766543   378999999999995431  1112233345578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAA  165 (211)
Q Consensus       152 ~g~~v~~~~~~l~~  165 (211)
                      ++.|+++++..|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.84  E-value=8.6e-09  Score=72.21  Aligned_cols=54  Identities=24%  Similarity=0.293  Sum_probs=40.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      +++++|.+|+|||||+|+|.+........ ..+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999877643322 234555555566654   5789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.82  E-value=1.3e-08  Score=73.65  Aligned_cols=55  Identities=27%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      .++|+++|.+|+|||||+|+|.+........ ..|++.....+.++.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEeCC---CEEEEECcC
Confidence            4799999999999999999999876533322 235666666665543   578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=4.8e-08  Score=72.50  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=81.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCC---------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh---hh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---RS   70 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~~   70 (211)
                      ..-.++|.|+|.+|.|||||+|.|.......         ....|..+.....++.-++..+++.++||||...+   ..
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            3446899999999999999999987643322         11112222222333444566788999999994321   11


Q ss_pred             hhH-----------Hh------------hc--CCcEEEEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           71 ITR-----------SY------------YR--GAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        71 ~~~-----------~~------------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      .|.           .|            +.  .+++.++.+..+.-. +..+ ..++..+.+    -+.++-|+.|.|-.
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~----vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE----VVNVVPVIAKADTL  197 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh----hheeeeeEeecccc
Confidence            111           11            11  466888888777532 1111 112222222    35577778899963


Q ss_pred             C--CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237          125 H--RRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus       125 ~--~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      .  ++....+.+++-...+++.+++--..+-
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            2  2222233444455567787776555543

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1e-07  Score=74.11  Aligned_cols=171  Identities=22%  Similarity=0.199  Sum_probs=110.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC----C------CC----CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK----R------FQ----PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~----~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+-+|+...|||||--.++.-    .      +.    ......-|+++....+.++-...+.-=.|+||+..|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            3579999999999999998877431    0      00    01111237777777787777677788889999999987


Q ss_pred             hhHHhhcCCcEEEEEEECCCH---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-C--HHHHHHHHHHcC--
Q 028237           71 ITRSYYRGAAGALLVYDITRR---ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-S--TEEGEQFAKEHG--  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~--~~~~~~~~~~~~--  142 (211)
                      ........-|+.|+|+..+|.   ++-+++.    .-++..  -..++|++||.|+.+..+. .  +-+++++..+++  
T Consensus       133 NMItGaaqMDGaILVVaatDG~MPQTrEHlL----LArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGPMPQTREHLL----LARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCCCcchHHHHH----HHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            777778889999999999983   3333221    111111  2457778899999743222 1  223456666665  


Q ss_pred             ---CcEEEEec---CCCCCHH---HHHHHHHHHHHHHHhcCcccCCCC
Q 028237          143 ---LIFMEASA---KTAQNVE---EAFIKTAATIYKKIQDGVFDVSNE  181 (211)
Q Consensus       143 ---~~~~~~sa---~~g~~v~---~~~~~l~~~~~~~~~~~~~~~~~~  181 (211)
                         +|++.-||   .+|.+-+   +....|.+.+-+..+.++.+.+++
T Consensus       207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~p  254 (449)
T KOG0460|consen  207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKP  254 (449)
T ss_pred             CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCC
Confidence               46887665   4553222   345556666666666666665554

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.76  E-value=6.2e-08  Score=78.16  Aligned_cols=95  Identities=26%  Similarity=0.328  Sum_probs=70.3

Q ss_pred             cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH----HHHHH
Q 028237           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE----QFAKE  140 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~  140 (211)
                      .+.|..+...+++.++++++|+|+.+..     ..|...+..+.. +.|+++|+||+|+.+.. ...+.+.    +++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            5678888889999999999999997754     234444444432 67999999999986532 3344444    34566


Q ss_pred             cCC---cEEEEecCCCCCHHHHHHHHHHH
Q 028237          141 HGL---IFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       141 ~~~---~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      .++   .++.+||++|.|++++|+.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.75  E-value=1.3e-07  Score=86.82  Aligned_cols=112  Identities=21%  Similarity=0.294  Sum_probs=70.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc--------hhhhhhHH
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE--------SFRSITRS   74 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~   74 (211)
                      .+|+|++|+||||+|+.- +..++-..      ...++.+.....+..+    +-.++|++|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~----~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD----EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC----CEEEEcCCCccccCCCcccccHHHHHH
Confidence            578999999999999886 33332211      1112222223333222    34499999922        22334555


Q ss_pred             hh---------cCCcEEEEEEECCC-----Hhh----HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           75 YY---------RGAAGALLVYDITR-----RET----FNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        75 ~~---------~~~d~~i~v~d~~~-----~~~----~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ++         +..+++|+++|+.+     ++.    ...++..+.++........|++|++||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            53         35789999999754     221    23445566777777778999999999999854

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.75  E-value=4.6e-08  Score=69.62  Aligned_cols=87  Identities=16%  Similarity=0.066  Sum_probs=56.5

Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+.+.... ......+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            68999999988765432  12221 1122247899999999998532110 11112233333556899999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          160 FIKTAATIYKK  170 (211)
Q Consensus       160 ~~~l~~~~~~~  170 (211)
                      ++.+.+...+.
T Consensus        77 ~~~i~~~~~~~   87 (155)
T cd01849          77 ESAFTKQTNSN   87 (155)
T ss_pred             HHHHHHHhHHH
Confidence            99998775544

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.75  E-value=3.8e-08  Score=70.21  Aligned_cols=55  Identities=24%  Similarity=0.289  Sum_probs=38.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      .++|+++|.+|+|||||+|+|.+......... .+.+.....+....   .+.+.||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEEcCC---CEEEEECcC
Confidence            57899999999999999999998655333222 24444444444432   367999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.73  E-value=1.6e-07  Score=75.07  Aligned_cols=83  Identities=19%  Similarity=0.079  Sum_probs=61.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh--
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF--   68 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~--   68 (211)
                      ++++|+|.|++|||||++.|+.... .....+.++.......+.+.+.               ...+.+.|.||...-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999877 5555555555665656665542               246889999995432  


Q ss_pred             -----hhhhHHhhcCCcEEEEEEECC
Q 028237           69 -----RSITRSYYRGAAGALLVYDIT   89 (211)
Q Consensus        69 -----~~~~~~~~~~~d~~i~v~d~~   89 (211)
                           .......++++|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 112334478899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01858 NGP_1 NGP-1

Probab=98.72  E-value=7.2e-08  Score=68.76  Aligned_cols=91  Identities=14%  Similarity=0.063  Sum_probs=57.1

Q ss_pred             hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237           75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~  154 (211)
                      .++.+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+.+... .......+.+......+.+||+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence            467899999999999864321 1122222222 233589999999999854221 1111222222222335789999999


Q ss_pred             CHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIY  168 (211)
Q Consensus       155 ~v~~~~~~l~~~~~  168 (211)
                      |++++++.+.+...
T Consensus        82 ~~~~L~~~l~~~~~   95 (157)
T cd01858          82 GKGSLIQLLRQFSK   95 (157)
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999876543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=3e-07  Score=72.37  Aligned_cols=120  Identities=13%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCCceeEEEEEEEEE------CCE----------------------
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITI------DNK----------------------   53 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~------~~~----------------------   53 (211)
                      .+....|+++|.=..||||||+.|+.+.++... -+..+++.......-      .+.                      
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            345678999999999999999999998776321 112222222222111      110                      


Q ss_pred             -----------EEEEEEEeCCCc-----------chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCC
Q 028237           54 -----------PIKLQIWDTAGQ-----------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN  111 (211)
Q Consensus        54 -----------~~~~~i~D~~G~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~  111 (211)
                                 --++.|+||||.           -.|.....-|...+|.+|++||+..-+--++....+..+..+   .
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c
Confidence                       034889999993           134556667889999999999987655444445555555444   4


Q ss_pred             CcEEEEEecCCCCC
Q 028237          112 MTIMLIGNKCDLAH  125 (211)
Q Consensus       112 ~p~ivv~nK~D~~~  125 (211)
                      -.+-||+||.|..+
T Consensus       212 dkiRVVLNKADqVd  225 (532)
T KOG1954|consen  212 DKIRVVLNKADQVD  225 (532)
T ss_pred             ceeEEEeccccccC
Confidence            45778899999754

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.71  E-value=8.5e-07  Score=71.31  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=83.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCC--------------CCCCC-------Cc---eeEEEEEEEEE-CCEEEEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDL-------TI---GVEFGARMITI-DNKPIKLQIW   60 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~-------~~---~~~~~~~~~~~-~~~~~~~~i~   60 (211)
                      -+-|+|+|+..+||||||++|...-..              +-+..       |+   .+.-....+.+ ++..+++.+.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            467999999999999999998432110              00000       00   12222333444 4668999999


Q ss_pred             eCCCcc-------------------hhhhh-----------hHHhhcCCc-EEEEEEECC--C--HhhHHHHH-HHHHHH
Q 028237           61 DTAGQE-------------------SFRSI-----------TRSYYRGAA-GALLVYDIT--R--RETFNHLA-SWLEDA  104 (211)
Q Consensus        61 D~~G~~-------------------~~~~~-----------~~~~~~~~d-~~i~v~d~~--~--~~~~~~~~-~~~~~l  104 (211)
                      |+.|.-                   +|...           .+-.-.++. ++++.-|-+  +  ++.+..+. ..+.++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            999821                   11110           001112222 555555533  2  22333322 344555


Q ss_pred             HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 028237          105 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT  152 (211)
Q Consensus       105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (211)
                      ...   ++|+++++|-.+..  .....+...++.++++++++.++...
T Consensus       177 k~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  177 KEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHH
Confidence            444   89999999999863  33456777888889999988877553

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.71  E-value=5.9e-07  Score=71.12  Aligned_cols=157  Identities=18%  Similarity=0.136  Sum_probs=97.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC--------------ceeEEEEEEEEECC-E---------------
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT--------------IGVEFGARMITIDN-K---------------   53 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~---------------   53 (211)
                      ...+.|+++|+.++|||||+-.|..+..+...-.+              .+-+.+...+-+++ +               
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            34688999999999999999888766554432221              13333333343332 1               


Q ss_pred             -----EEEEEEEeCCCcchhhh--hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           54 -----PIKLQIWDTAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        54 -----~~~~~i~D~~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                           +.-+.+.|+.|++.|-+  +....-+..|..++++.+++.-+-- ..+.+..+..   -..|++|++||+|+...
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~d  270 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPD  270 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcH
Confidence                 23477899999999865  4444456789999999998854311 1122222222   38999999999999653


Q ss_pred             CCCC--HHHHHH----------------------HHHHcC---CcEEEEecCCCCCHHHHHHHHH
Q 028237          127 RAVS--TEEGEQ----------------------FAKEHG---LIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus       127 ~~~~--~~~~~~----------------------~~~~~~---~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      +...  .+++.+                      .+.+.+   +|+|.+|+.+|+|++-+.+.+.
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            2110  111111                      111112   4799999999999876655443

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=2e-08  Score=79.99  Aligned_cols=132  Identities=17%  Similarity=0.191  Sum_probs=97.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC--------CCCC--------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR--------FQPV--------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      -+|+|+.+-.+||||...+++.-.        .+..        ....-|++....-+.++++.++++++||||+-.|.-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            479999999999999999975421        1111        111237888888899999999999999999999998


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI  144 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      ...+.++-.|+++.|||.+-.-..+.+..|.+    ....+.|.+.++||+|.....  ....+...-++.++.
T Consensus       118 everclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an--fe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN--FENAVDSIEEKLGAK  185 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh--hhhHHHHHHHHhCCc
Confidence            89999999999999999986544444555543    333589999999999985432  122334444555553

>cd01856 YlqF YlqF

Probab=98.68  E-value=6.7e-08  Score=69.95  Aligned_cols=57  Identities=28%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      ..++++++|.+|+|||||+|+|.+..+... ....+++.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            347899999999999999999998776422 2223455555555554   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.5e-07  Score=78.12  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=84.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCC----------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      .-+|+++-+-.+||||+-++.+...-...                ....-+++....-..+.+.+++++++||||+-.|.
T Consensus        39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence            34788899999999999999754321110                11122666666666666678999999999999999


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      -.....++-.|++++|++....-.-+....|.+ +.++   ++|.+.++||+|..
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRM  169 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhc
Confidence            888899999999999999876443333444433 3444   89999999999974

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.65  E-value=1.3e-07  Score=73.53  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcch---
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQES---   67 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---   67 (211)
                      .++++|+|.|++|||||+|.|+.........|.++++.....+.+...               +..++++|++|.-.   
T Consensus        20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            479999999999999999999999998888888888887776666432               45689999998432   


Q ss_pred             -hhhhhHHh---hcCCcEEEEEEECC
Q 028237           68 -FRSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        68 -~~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                       -..+...|   ++.+|+++.|+++.
T Consensus       100 ~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen  100 AGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cCcCchHHHHHhhhhccceeEEEEec
Confidence             23344555   67899999999864

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.4e-06  Score=73.50  Aligned_cols=144  Identities=19%  Similarity=0.191  Sum_probs=82.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEE-----------------------------------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF-----------------------------------------   43 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-----------------------------------------   43 (211)
                      ...||++.|..++||||++|.++....-+.....++.-+                                         
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            468999999999999999999976544222111100000                                         


Q ss_pred             --EEEEEEECCE-----EEEEEEEeCCCcc---hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc
Q 028237           44 --GARMITIDNK-----PIKLQIWDTAGQE---SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT  113 (211)
Q Consensus        44 --~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p  113 (211)
                        ....+.+++.     .-.+.+.|.||..   ..+.-...+...+|++|||.+..+..+..+. ++   +......+..
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~F---f~~vs~~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QF---FHKVSEEKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HH---HHHhhccCCc
Confidence              0011111111     0136788999954   4555666778899999999999876643331 22   2222222445


Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHcCC--------cEEEEecCC
Q 028237          114 IMLIGNKCDLAHRRAVSTEEGEQFAKEHGL--------IFMEASAKT  152 (211)
Q Consensus       114 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~~  152 (211)
                      +.++.||.|.........+++.+=..+...        .++.+||+.
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            666668889754433333444333333321        277888664

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.64  E-value=1.1e-06  Score=72.46  Aligned_cols=135  Identities=16%  Similarity=0.266  Sum_probs=86.0

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc-------------------------------------------
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-------------------------------------------   39 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-------------------------------------------   39 (211)
                      .+...+|+|+|...+||||.+..+...+..+.-....                                           
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            4667899999999999999999875433221111100                                           


Q ss_pred             ---------eeEEE--EEEEEECCE-EEEEEEEeCCCc-------------chhhhhhHHhhcCCcEEEEEEECCCHhh-
Q 028237           40 ---------GVEFG--ARMITIDNK-PIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRET-   93 (211)
Q Consensus        40 ---------~~~~~--~~~~~~~~~-~~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~-   93 (211)
                               |.+..  ....++.|. --+..+.|.||.             +....+..+|..+.+++|+|+-=...+. 
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE  464 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE  464 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence                     22222  222333332 245789999992             3445688899999999999985332221 


Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028237           94 FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE  140 (211)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (211)
                      -..+.++...+   ...+...|+|++|+|+.+..-.+++.++++..-
T Consensus       465 RSnVTDLVsq~---DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  465 RSIVTDLVSQM---DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             hhhHHHHHHhc---CCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            11222332222   234888999999999988777778888777654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.63  E-value=1.6e-07  Score=73.59  Aligned_cols=58  Identities=28%  Similarity=0.377  Sum_probs=42.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      ..++++|+|.+|+|||||+|.|.+....... ...+.+.....+.++.   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            4579999999999999999999987653332 2335555555565543   57799999953

>cd01855 YqeH YqeH

Probab=98.62  E-value=8.9e-08  Score=70.47  Aligned_cols=56  Identities=25%  Similarity=0.309  Sum_probs=40.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      .+++++|.+|+|||||+|.|.+....       .......+++.....+.++.   .+.++||||.
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            57999999999999999999975431       12223335666666666653   4689999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.62  E-value=1.5e-07  Score=67.05  Aligned_cols=56  Identities=23%  Similarity=0.336  Sum_probs=39.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      ...+++++|.+|+|||||+|+|.+... ....++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            357899999999999999999996543 23334445554444333333   688999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.61  E-value=1.4e-07  Score=73.52  Aligned_cols=57  Identities=30%  Similarity=0.479  Sum_probs=42.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      ..++++|+|.+|+|||||+|+|.+........ ..+.+.....+.+..   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence            35789999999999999999999876443322 235555555666543   5689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.3e-07  Score=78.79  Aligned_cols=117  Identities=20%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------------CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF   68 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (211)
                      .+.+-+|+++.+...|||||...|....-.              .....+-|++...-.+....+++.++++|+|||-.|
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            455678999999999999999998754321              111222344444444545456799999999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237           69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL  123 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  123 (211)
                      .+......+-+|++++++|+...-..+.    +..+++....+...++|+||+|.
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence            9999999999999999999986332222    22222222236678999999993

>cd01856 YlqF YlqF

Probab=98.60  E-value=2.2e-07  Score=67.25  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028237           69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA  148 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      .......++++|++++|+|+.++...... .+...   .  .++|+++|+||+|+.+...  .....++.+..+..++.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~---~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI---L--GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH---h--cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34456678899999999999876542211 11111   1  2579999999999853211  111222333344568999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      |++++.|++++...+.+.+..
T Consensus        82 Sa~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             ECCCcccHHHHHHHHHHHHHH
Confidence            999999999999998887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.60  E-value=1e-07  Score=75.63  Aligned_cols=57  Identities=25%  Similarity=0.392  Sum_probs=46.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      .++++|+|.+|+|||||||+|.+........ ..|.|.....+.+...   +.++||||.-
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEcCCC---eEEecCCCcC
Confidence            4789999999999999999999987743333 3389998888888763   7799999943

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=5.7e-07  Score=70.98  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=93.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC----------------C-------ceeEEEEEEEEECC---------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------T-------IGVEFGARMITIDN---------   52 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~~~~~~---------   52 (211)
                      ..+|++|+|...+|||||+-.|+.+..+...-.                +       .|.+-....+.+..         
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            368999999999999999988876544322111                1       12222222222211         


Q ss_pred             -EEEEEEEEeCCCcchhhhhhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC--
Q 028237           53 -KPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR--  127 (211)
Q Consensus        53 -~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--  127 (211)
                       ...-+.++|.+|+..|.....+.+.  ..|...+|++++..-.+. .++.+..+..   -++|+.|+++|+|+.+..  
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence             1234789999999998775555544  357888888887643221 1222222222   289999999999996641  


Q ss_pred             ----------------------CCCHHHHHHHHHHc----CCcEEEEecCCCCCHHHHHHH
Q 028237          128 ----------------------AVSTEEGEQFAKEH----GLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus       128 ----------------------~~~~~~~~~~~~~~----~~~~~~~sa~~g~~v~~~~~~  162 (211)
                                            .-+.++.-..+++.    =.|+|.+|...|+|++-+-..
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence                                  11222333333332    147999999999998755443

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.54  E-value=8.3e-07  Score=69.17  Aligned_cols=93  Identities=17%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      ......++.+|++++|+|+.++.+.+.. .+...+     .++|+++|+||+|+.+...  .....+..+..+.+++.+|
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iS   84 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAIN   84 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence            3456678899999999999876543221 111111     2689999999999853211  1111222233456789999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 028237          150 AKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++++.|+.++.+.+.+.+.+.
T Consensus        85 a~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        85 AKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCCcccHHHHHHHHHHHHHHh
Confidence            999999999999888776554

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.54  E-value=2.1e-06  Score=64.83  Aligned_cols=87  Identities=16%  Similarity=0.090  Sum_probs=55.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEEC---CEEEEEEEEeCCCcchhh------hhhH
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITID---NKPIKLQIWDTAGQESFR------SITR   73 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~------~~~~   73 (211)
                      ...-|.|+|++++|||+|+|.|++.  .+....... ..+.........   +....+.++||+|.....      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~-~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQ-QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCC-CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            3567999999999999999999998  665443322 222222222222   235789999999965332      2222


Q ss_pred             HhhcC--CcEEEEEEECCCHh
Q 028237           74 SYYRG--AAGALLVYDITRRE   92 (211)
Q Consensus        74 ~~~~~--~d~~i~v~d~~~~~   92 (211)
                      ..+..  ++.+|+..+.+...
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            33333  78888888776533

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.51  E-value=1.3e-07  Score=67.09  Aligned_cols=59  Identities=24%  Similarity=0.309  Sum_probs=33.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCC------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQP------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      .++++|++|+|||||+|.|.+.....      ......-++.....+.+....   .++||||...+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            57899999999999999999863221      111111222234445554323   488999976554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.51  E-value=4.6e-07  Score=63.40  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             HHhhcCCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           73 RSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      ...+..+|++++|+|+.++.+..  .+..++..   . ..++|+++++||+|+.+..  ......+..+..+..++.+||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence            34578899999999998876533  33333332   1 1478999999999985422  122334555566778999999


Q ss_pred             CCCCC
Q 028237          151 KTAQN  155 (211)
Q Consensus       151 ~~g~~  155 (211)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.46  E-value=5.2e-07  Score=64.21  Aligned_cols=56  Identities=23%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      ...+++++|.+|+|||||+|.|.+... .....+  +++.....+.+.   ..+.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCCC
Confidence            457899999999999999999998653 222222  333333344443   35789999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.39  E-value=3e-06  Score=60.46  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      +++.|+.|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.39  E-value=6.7e-07  Score=71.65  Aligned_cols=58  Identities=26%  Similarity=0.381  Sum_probs=37.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCC------ceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------IGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ++|+|.+|+|||||||+|++..........      --++.....+.+.+..   .++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            689999999999999999976433221111      0123334445554322   389999987665

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.39  E-value=2.8e-06  Score=66.58  Aligned_cols=125  Identities=19%  Similarity=0.183  Sum_probs=74.9

Q ss_pred             CCCcc-hhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028237           62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE  140 (211)
Q Consensus        62 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (211)
                      .|||- .........+..+|++++|+|+.++.+.+.  .++....    .++|+++|+||+|+.+..  .......+.+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~--~~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE--VTKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH--HHHHHHHHHHH
Confidence            35543 223345666889999999999987654322  1111111    168999999999985321  11122222334


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCC
Q 028237          141 HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGP  195 (211)
Q Consensus       141 ~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (211)
                      .+.+++.+|+.++.|+.++.+.+.+.+.+...... ........+++.-.|.|+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~G~pnv  132 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEKNERRK-AKGMRPRAIRAMIIGIPNV  132 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhh-hcccCcCceEEEEECCCCC
Confidence            46778999999999999999988887655432111 1111223455555566643

>PRK13796 GTPase YqeH; Provisional

Probab=98.33  E-value=6.3e-06  Score=66.75  Aligned_cols=94  Identities=24%  Similarity=0.332  Sum_probs=62.7

Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH----HHHHc
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAKEH  141 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~  141 (211)
                      +.|...........+.+++|+|+.|..     ..|...+.+... +.|+++|+||+|+... ....+.+..    +++..
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            345554444443344999999998743     223444444332 6799999999999653 233344433    35555


Q ss_pred             CC---cEEEEecCCCCCHHHHHHHHHHH
Q 028237          142 GL---IFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       142 ~~---~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.32  E-value=1.1e-06  Score=70.42  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=36.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCce-------eEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-------VEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ++|+|++|+|||||||.|.+.......... +       ++.....+.+.+..   .++||||...+.
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs-~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~  238 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVS-GKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD  238 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcccccccccc-CCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence            799999999999999999975432221111 1       23333445454322   589999976544

>PRK01889 GTPase RsgA; Reviewed

Probab=98.31  E-value=3e-06  Score=68.34  Aligned_cols=83  Identities=12%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~  154 (211)
                      ..++|.+++|+++..+.....+..++.....   .+.|.+||+||+|+.+..   .+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            5789999999999744444444444444333   377889999999996431   112222222 346789999999999


Q ss_pred             CHHHHHHHHH
Q 028237          155 NVEEAFIKTA  164 (211)
Q Consensus       155 ~v~~~~~~l~  164 (211)
                      |++++..+|.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999988874

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=6.8e-05  Score=52.74  Aligned_cols=146  Identities=18%  Similarity=0.207  Sum_probs=75.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCC-Cc------------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA-GQ------------------   65 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~------------------   65 (211)
                      ..+||.|-|+||+|||||+..+...-....+.-.   -+...++.-.++..-|.+.|+. |.                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg---Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG---GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee---eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4689999999999999999987643222222211   1222233344555555666655 21                  


Q ss_pred             ---chhhh----hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 028237           66 ---ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA  138 (211)
Q Consensus        66 ---~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  138 (211)
                         +.+..    .....++.+|++  ++|=-.+..+. ...+...+........|++..+.+.+.       ...+.++.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-------~P~v~~ik  150 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-------HPLVQRIK  150 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-------ChHHHHhh
Confidence               11111    223334445544  45543332211 123444455555558898888877653       22233333


Q ss_pred             HHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          139 KEHGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       139 ~~~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ...++.++    .+..|=+.++..+.+.+
T Consensus       151 ~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         151 KLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             hcCCEEEE----EccchhhHHHHHHHHHh
Confidence            33333333    44445456666666544

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=5.3e-06  Score=75.02  Aligned_cols=111  Identities=24%  Similarity=0.316  Sum_probs=66.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCC-CCC-----CCceeEEEEEEEEECCEEEEEEEEeCCCc--------chhhhhhHH
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQP-VHD-----LTIGVEFGARMITIDNKPIKLQIWDTAGQ--------ESFRSITRS   74 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~   74 (211)
                      .+|||++|+||||++..-- ..|+. ...     ...+ +..+. .-+.   -+-.++||.|.        +.....|..
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cd-wwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCD-WWFT---DEAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccC-cccc---cceEEEcCCcceecccCcchhhHHHHHH
Confidence            4688999999999885532 22211 111     1111 11111 1122   24458899982        123345554


Q ss_pred             h---------hcCCcEEEEEEECCC-----Hhh----HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           75 Y---------YRGAAGALLVYDITR-----RET----FNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        75 ~---------~~~~d~~i~v~d~~~-----~~~----~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +         .+..+++|+.+|+.+     +..    ...++.-++++........|++|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            4         345789999999754     221    22344446667777778999999999999854

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.25  E-value=1.4e-05  Score=63.40  Aligned_cols=105  Identities=19%  Similarity=0.112  Sum_probs=60.6

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHh--------hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSY--------YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC  121 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~  121 (211)
                      .+.+.|+||||......    ....+        -...+..++|+|++...  +.+.+. ......   -.+.-+|+||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEECC
Confidence            46789999999643221    11111        13467889999998532  222221 111111   13457889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      |....    .-.+..+....++|+..++  +|++++++-..=.+.+.+.
T Consensus       270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~~~~  312 (318)
T PRK10416        270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEFVDA  312 (318)
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHHHHH
Confidence            95322    3344555677789988887  7888877655444444443

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.6e-05  Score=59.78  Aligned_cols=161  Identities=22%  Similarity=0.278  Sum_probs=97.5

Q ss_pred             eeeEEEEcCCCC--CHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE--EEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--PIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         6 ~~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..-++|+|-.|+  ||.+|+.+|....+.........+.++..++.-...  ++.+.|.-  --+++.-......+...+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcish--icde~~lpn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISH--ICDEKFLPNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeec--ccchhccCCcccccceee
Confidence            356889999998  999999999988777666555444554443322221  22333221  112222122223444569


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-----------------------------------
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-----------------------------------  126 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------------------------------  126 (211)
                      +++|||++....+..+..|+.......-  --++.++||+|...+                                   
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            9999999999999999998754322210  124556788886431                                   


Q ss_pred             ------CC---CCHHHHHHHHHHcCCcEEEEecCCC------------CCHHHHHHHHHHHHHHH
Q 028237          127 ------RA---VSTEEGEQFAKEHGLIFMEASAKTA------------QNVEEAFIKTAATIYKK  170 (211)
Q Consensus       127 ------~~---~~~~~~~~~~~~~~~~~~~~sa~~g------------~~v~~~~~~l~~~~~~~  170 (211)
                            ..   ........|+.++++.+++.++...            .||..+|..|-..+-..
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg  224 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG  224 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence                  00   1122246678888999999998533            36777777765544433

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.25  E-value=2e-06  Score=65.80  Aligned_cols=58  Identities=26%  Similarity=0.318  Sum_probs=36.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      .++++|.+|+|||||+|.|.+.......      ....-++.....+.+.+.    .++||||...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence            6789999999999999999975432211      111112333344444432    599999976554

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.21  E-value=2.4e-06  Score=69.10  Aligned_cols=57  Identities=23%  Similarity=0.255  Sum_probs=39.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC----CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      .++.|+|.+|+|||||||+|.....    .....+..|+|.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            3789999999999999999986431    1112233356666666666442   3699999964

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.21  E-value=3.5e-05  Score=59.90  Aligned_cols=102  Identities=19%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             EEEEEEEeCCCcchhhhhh----HH---h-----hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237           54 PIKLQIWDTAGQESFRSIT----RS---Y-----YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC  121 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~  121 (211)
                      .+.+.++||+|....+...    ..   .     -...|..++|+|++...  +.+... .......   .+.-+|+||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~-~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQA-KVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHH-HHHHhhC---CCCEEEEEcc
Confidence            4678999999965433211    11   1     12378999999997432  222221 2222111   2467889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      |....    .-.+..+....++|+..++  +|.+++++-..=.+.+
T Consensus       228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~~~  267 (272)
T TIGR00064       228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPFDADWF  267 (272)
T ss_pred             CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHHHH
Confidence            96432    3334555556688977777  7777776654333333

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.20  E-value=4.5e-06  Score=67.46  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=40.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC----CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF   68 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (211)
                      .++.++|.+|+|||||+|+|+.....    .......+++.....+.+++   .+.++||||....
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~  217 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINS  217 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCCh
Confidence            47999999999999999999975321    12223335555555555533   2469999996543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.20  E-value=7.1e-06  Score=63.62  Aligned_cols=92  Identities=21%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             hhHHhhcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028237           71 ITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                      +.+--..+.|-.++|+.+.+|+- ...+..++-....   .++..++++||+|+.+......++.+......+.+++.+|
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s  148 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS  148 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence            33344556788888888887763 3333333333222   3788888999999976544333456778888999999999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 028237          150 AKTAQNVEEAFIKTAA  165 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~  165 (211)
                      ++++.+++++...+..
T Consensus       149 ~~~~~~~~~l~~~l~~  164 (301)
T COG1162         149 AKNGDGLEELAELLAG  164 (301)
T ss_pred             CcCcccHHHHHHHhcC
Confidence            9999999999887654

>PRK14974 cell division protein FtsY; Provisional

Probab=98.19  E-value=1e-05  Score=64.44  Aligned_cols=103  Identities=14%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             EEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      +.+.|+||+|......    ....+  .-..|..++|+|+..... .+.+    ......   -..--+++||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~---~~~~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA---VGIDGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc---CCCCEEEEeeecCCCC-
Confidence            5689999999653221    11222  235788999999865332 1111    111111   1235778999997432 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                         .--+..++...+.|+..++  +|.+++++...=.+.+.++
T Consensus       295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~  332 (336)
T PRK14974        295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDK  332 (336)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHH
Confidence               2233444555688877776  7888887765444444443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.18  E-value=2.6e-05  Score=63.95  Aligned_cols=85  Identities=12%  Similarity=-0.021  Sum_probs=46.2

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      .+.+.|+||+|......    ....+  ....+.+++|+|++-.....+..   ..+...   -.+.-+|+||.|-... 
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~ar-  254 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHAK-  254 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCCC-
Confidence            46889999999653322    11122  23567899999987543222111   222111   2366888999996321 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEE
Q 028237          128 AVSTEEGEQFAKEHGLIFMEA  148 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~  148 (211)
                         .-.+..+....+.|+..+
T Consensus       255 ---gG~aLs~~~~t~~PI~fi  272 (429)
T TIGR01425       255 ---GGGALSAVAATKSPIIFI  272 (429)
T ss_pred             ---ccHHhhhHHHHCCCeEEE
Confidence               112334445556664443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.15  E-value=1.1e-05  Score=60.92  Aligned_cols=82  Identities=20%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-------hhhhHHhhcCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RSITRSYYRGA   79 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   79 (211)
                      -++.++|.|.+|||||+..|.+...........+.+...-.+.+++  -++++.|.||.-+-       ........+-+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3899999999999999999987655433333323333333344444  67888999994221       11222335667


Q ss_pred             cEEEEEEECCC
Q 028237           80 AGALLVYDITR   90 (211)
Q Consensus        80 d~~i~v~d~~~   90 (211)
                      +.+++|.|+..
T Consensus       138 nli~~vld~~k  148 (358)
T KOG1487|consen  138 NLIFIVLDVLK  148 (358)
T ss_pred             cEEEEEeeccC
Confidence            78888888654

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.14  E-value=4.6e-06  Score=64.63  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      -.+++|++|+|||||+|+|.....      .......-=++.....+.+.+...   |.||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            467999999999999999986422      112211112333455566643232   88999987665

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.13  E-value=5.4e-06  Score=64.98  Aligned_cols=60  Identities=18%  Similarity=0.235  Sum_probs=38.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCC------CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      -.++++|++|+|||||+|.|.+........      ....++.....+......   .++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            368999999999999999998764432211      111233334445554322   489999987654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1.6e-05  Score=66.12  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=66.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      ++=|+|+|++|+||||||+.|...--........|    .. ..+.++..++.+.++|. + ... .....+-+|+++++
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~-D-l~~-miDvaKIaDLVlLl  140 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPS-D-LHQ-MIDVAKIADLVLLL  140 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChH-H-HHH-HHhHHHhhheeEEE
Confidence            56788999999999999998875322111111101    11 23567788999999993 2 222 23346678999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLA  124 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~  124 (211)
                      +|.+-...++. ..+++.+..+   +.| ++-|+|..|+-
T Consensus       141 IdgnfGfEMET-mEFLnil~~H---GmPrvlgV~ThlDlf  176 (1077)
T COG5192         141 IDGNFGFEMET-MEFLNILISH---GMPRVLGVVTHLDLF  176 (1077)
T ss_pred             eccccCceehH-HHHHHHHhhc---CCCceEEEEeecccc
Confidence            99875443333 2334444444   556 45567999983

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.08  E-value=4.5e-06  Score=68.40  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      .+.|++||.||+||||+||.|.+...- ....|.|-+...+++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            589999999999999999999987653 3444557888888887776   5668899994

>PRK00098 GTPase RsgA; Reviewed

Probab=98.07  E-value=8.6e-06  Score=64.19  Aligned_cols=58  Identities=22%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC------ceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------IGVEFGARMITIDNKPIKLQIWDTAGQESF   68 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (211)
                      .++++|++|+|||||+|.|.+..........      .-++.....+.+.+.   ..++||||...+
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence            5889999999999999999876433221111      012233344444432   358999997644

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.04  E-value=1.4e-05  Score=58.17  Aligned_cols=82  Identities=17%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             EEEEEEeCCCcchhhhh---hH--HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSI---TR--SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV  129 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~---~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  129 (211)
                      ....+.++.|...-..+   ..  ...-..+.+|.|+|+.+-.....+...+..-..++     -+|++||+|+.+.. .
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-Q  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-h
Confidence            45667788885544433   01  11234579999999976433333333333323333     38899999986543 2


Q ss_pred             CHHHHHHHHHHcC
Q 028237          130 STEEGEQFAKEHG  142 (211)
Q Consensus       130 ~~~~~~~~~~~~~  142 (211)
                      ..+..++..++.+
T Consensus       159 ~i~~~~~~ir~ln  171 (178)
T PF02492_consen  159 KIERVREMIRELN  171 (178)
T ss_dssp             -HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHC
Confidence            2355666665543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.01  E-value=0.00019  Score=57.05  Aligned_cols=95  Identities=11%  Similarity=0.127  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCcchhhhhhHHhhc--------CCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ....++++.|...-..+...++.        ..+.+|.|+|+.+-.. .+.......++.      .--+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence            44577888887665555544422        2478999999875322 111111222222      12388999999865


Q ss_pred             CCCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Q 028237          126 RRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAF  160 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~~v~~~~  160 (211)
                      .    .+.+++..+..+  ++++.+. ........+|
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            2    245555555543  5566544 3234444444

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.00  E-value=5.6e-05  Score=57.73  Aligned_cols=59  Identities=27%  Similarity=0.465  Sum_probs=43.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC----ceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      .++|+-+|..|-|||||+..|.+..+...+.+.    +..........-.+..+++.+.||.|
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            589999999999999999999998876554442    22222222233356678899999998

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.94  E-value=6.6e-05  Score=52.95  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=36.1

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD  122 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  122 (211)
                      .+.+.|.|++|.....   ..++..+|.+|+|..+.--+.+.-+.   ..+...     --++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~~-----~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIMEI-----ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhhh-----cCEEEEeCCC
Confidence            4678899998854222   34888899999988887333222211   122222     2388899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=0.00017  Score=58.22  Aligned_cols=139  Identities=15%  Similarity=0.077  Sum_probs=71.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC-C--CCCCceeEEE----------------EEEEEEC-----------CEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-V--HDLTIGVEFG----------------ARMITID-----------NKPIK   56 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~--~~~~~~~~~~----------------~~~~~~~-----------~~~~~   56 (211)
                      -.++|+|++|+||||++..|....... .  ....++.+.+                .....+.           .....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            368899999999999999986532110 0  0000011110                0001111           12457


Q ss_pred             EEEEeCCCcchhhhhh---HHhh---cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCC
Q 028237           57 LQIWDTAGQESFRSIT---RSYY---RGAAGALLVYDITR-RETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        57 ~~i~D~~G~~~~~~~~---~~~~---~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~  127 (211)
                      +.++||+|....+...   ...+   ....-.++|++++. .+.+..+...+........  ..-+-=+|+||.|-.   
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt---  294 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA---  294 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC---
Confidence            8899999966433211   1112   22345688888875 4444443332332211100  001346778999953   


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 028237          128 AVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                       ...-.+..+....+.|+..++
T Consensus       295 -~~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        295 -SNLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             -CCccHHHHHHHHHCcCeEEEe
Confidence             234556677777788755444

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.92  E-value=0.00037  Score=58.51  Aligned_cols=91  Identities=18%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             EEEEEEEeCCCcchhhhhhHH---hh--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRSITRS---YY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      .+.+.|+||+|....+.....   .+  ......++|++.+..  ...+...+..+..    ..+.-+|+||.|..    
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt----  497 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDET----  497 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCc----
Confidence            467899999996543321110   01  112356677776632  2222232222222    24677999999963    


Q ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237          129 VSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      ...-.+..+....+.++..++  +|..|
T Consensus       498 ~~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        498 GRFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             cchhHHHHHHHHhCCCEEEEe--CCCCc
Confidence            234566677777788855554  44455

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.87  E-value=0.00061  Score=54.12  Aligned_cols=143  Identities=19%  Similarity=0.178  Sum_probs=76.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCC------CCCCCceeE----------------EEEEEEEECC-------------E
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQP------VHDLTIGVE----------------FGARMITIDN-------------K   53 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~----------------~~~~~~~~~~-------------~   53 (211)
                      .+|-|.-|||||||+|+++.+....      .....++++                -.....++++             .
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            4678999999999999998664311      000111111                0011111100             1


Q ss_pred             EEEEEEEeCCCcchhhhhhHHhh--------cCCcEEEEEEECCCHhhHHH-HHH-HHHHHHHhcCCCCcEEEEEecCCC
Q 028237           54 PIKLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRETFNH-LAS-WLEDARQHANANMTIMLIGNKCDL  123 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~-~~~-~~~~l~~~~~~~~p~ivv~nK~D~  123 (211)
                      .....++++.|...=......++        -..|++|-|+|+.+-..... +.. ...++. .+     -+|++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~A-----D~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-FA-----DVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-hC-----cEEEEecccC
Confidence            13455777777544333333232        23568999999876443222 222 233332 22     3899999999


Q ss_pred             CCCCCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Q 028237          124 AHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAF  160 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~~v~~~~  160 (211)
                      .+...  .+..+...+..+  ++++.++. .+.+..+++
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            76542  555566666554  56888776 334444443

>PRK13695 putative NTPase; Provisional

Probab=97.85  E-value=0.0007  Score=49.02  Aligned_cols=22  Identities=41%  Similarity=0.688  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|+|.|.+|+|||||++.+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00051  Score=56.44  Aligned_cols=142  Identities=19%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC-----CC-------CCCC-----------CceeEEEEEEEE-------ECCEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF-----QP-------VHDL-----------TIGVEFGARMIT-------IDNKPIK   56 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~-----~~-------~~~~-----------~~~~~~~~~~~~-------~~~~~~~   56 (211)
                      -.|+++|++|+||||++..|.+...     ..       .+..           ..+.......-.       ..-.+..
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d  271 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH  271 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence            4799999999999999997764310     00       0000           001111000000       0012356


Q ss_pred             EEEEeCCCcchhhh----hhHHhh--cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237           57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV  129 (211)
Q Consensus        57 ~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  129 (211)
                      +.++||+|......    ....+.  ...+-.++|++++- ...+..+...+      .. --.-=+|+||.|-..    
T Consensus       272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f------~~-~~~~~~I~TKlDEt~----  340 (420)
T PRK14721        272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY------QG-HGIHGCIITKVDEAA----  340 (420)
T ss_pred             EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh------cC-CCCCEEEEEeeeCCC----
Confidence            78999999554322    122221  22446788899874 44333322222      11 223467799999532    


Q ss_pred             CHHHHHHHHHHcCCcEEEEecCCCCCH-HHHHH
Q 028237          130 STEEGEQFAKEHGLIFMEASAKTAQNV-EEAFI  161 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~~  161 (211)
                      ..-.+..+....++|+..++  +|.+| +++..
T Consensus       341 ~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~  371 (420)
T PRK14721        341 SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE  371 (420)
T ss_pred             CccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence            34556677778888866554  55666 34433

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.83  E-value=1.6e-05  Score=63.40  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=43.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      ..++++|+|.+++||||+||+|.....-..- ...|.+..-+++..+.   .+.|.|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            4689999999999999999999987663222 2236677667776654   6678899993

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.83  E-value=0.00022  Score=51.52  Aligned_cols=84  Identities=17%  Similarity=0.061  Sum_probs=46.3

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      .+.+.+.|++|......    ....+  ....+.+++|++......   ...+...+....  + ..-+++||.|.... 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~-  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR-  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC-
Confidence            35678899999743221    11111  234889999999865432   122223322222  2 35677899997432 


Q ss_pred             CCCHHHHHHHHHHcCCcEEE
Q 028237          128 AVSTEEGEQFAKEHGLIFME  147 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~  147 (211)
                         .-.+...+...++|+..
T Consensus       155 ---~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         155 ---GGAALSIRAVTGKPIKF  171 (173)
T ss_pred             ---cchhhhhHHHHCcCeEe
Confidence               22233366666777543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=1.9e-05  Score=63.08  Aligned_cols=157  Identities=20%  Similarity=0.140  Sum_probs=93.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC-----------------CC------------CCCCCceeEEEEEEEEECCEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------QP------------VHDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~-----------------~~------------~~~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...+++.++|+..+||||+-..+....-                 ..            ...+.-+.+...-...++-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            3468999999999999998766532100                 00            000111233333333344445


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh---hHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVS  130 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~  130 (211)
                      .++.+.|+||+..|-........++|..++|+++...+   .|+.-.+.......... .-...|+++||+|-+.. .++
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv-nWs  235 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV-NWS  235 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc-Ccc
Confidence            78899999999999877777788899999998874321   12222122211111111 24668999999996431 122


Q ss_pred             -------HHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 028237          131 -------TEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus       131 -------~~~~~~~~~~~~------~~~~~~sa~~g~~v~~~~~  161 (211)
                             .+.+..|....+      ..++++|..+|.++.+...
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                   222334444333      3489999999999887664

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.75  E-value=0.00022  Score=56.79  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|+|...+|||||+-.|++..
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHge  157 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGE  157 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecc
Confidence            5799999999999999997776543

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.73  E-value=0.00016  Score=50.46  Aligned_cols=105  Identities=12%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC
Q 028237           11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR   90 (211)
Q Consensus        11 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   90 (211)
                      .-|..|+|||++--.+...-. .......-.+..   .......+.+.++|+|+...  ......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence            456889999998766543211 011111001100   00011127789999998543  33456788999999999987 


Q ss_pred             HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237           91 RETFNHLASWLEDARQHANANMTIMLIGNKCDL  123 (211)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  123 (211)
                      ..+...+...++.+.... ...++.+++|+.+.
T Consensus        78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            444555455555554332 35678899999975

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.73  E-value=5.6e-05  Score=54.44  Aligned_cols=136  Identities=20%  Similarity=0.271  Sum_probs=64.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT-AGQ---------------------   65 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   65 (211)
                      +|.|-|.+|+|||||+++++..-..... +..|  +....+.-++...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCG-GEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCC-ccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            6899999999999999998754211111 1111  11122223333344444454 221                     


Q ss_pred             -chhhh----hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecC-CCCCCCCCCHHHHHHHHH
Q 028237           66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC-DLAHRRAVSTEEGEQFAK  139 (211)
Q Consensus        66 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~  139 (211)
                       +.|..    .....+..+|  ++|+|=-.+..+ ....|.+.+....+.++|++.++.+. +.        .-+.++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence             11111    1112123334  777772211100 01223444444444578888888766 32        22455666


Q ss_pred             HcCCcEEEEecCCCCCHH
Q 028237          140 EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus       140 ~~~~~~~~~sa~~g~~v~  157 (211)
                      ..++.+++++..+...+.
T Consensus       147 ~~~~~i~~vt~~NRd~l~  164 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDALP  164 (168)
T ss_dssp             TTTSEEEE--TTTCCCHH
T ss_pred             CCCcEEEEeChhHHhhHh
Confidence            778889998887766553

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=0.00085  Score=55.48  Aligned_cols=90  Identities=20%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             EEEEEEEeCCCcchhh----hhhHHhhc---CCcEEEEEEECCCH-hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           54 PIKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      .+.+.|+||+|.....    .....++.   ...-+++|++.+-. ..+..   .+..+   ...+ +.-+++||.|-..
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~---~~~~f---~~~~-~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD---IYKHF---SRLP-LDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH---HHHHh---CCCC-CCEEEEecccccc
Confidence            3678999999965432    12223333   23466788887542 22222   22222   1112 2368899999632


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237          126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                          ..-.+..+....++|+..++  +|.+|
T Consensus       372 ----~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 ----SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ----cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence                34457777888888866554  45554

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.72  E-value=0.00033  Score=46.09  Aligned_cols=82  Identities=21%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             EEEEc-CCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         9 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      |.+.| ..|+||||+...+...-.. .     +...  ..+..+. .+.+.++|+|+.....  ....+..+|.+|++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~v--l~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRV--LLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcE--EEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56677 5689999998776543221 1     1111  1122222 2678899999865433  3367778999999998


Q ss_pred             CCCHhhHHHHHHHHH
Q 028237           88 ITRRETFNHLASWLE  102 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~  102 (211)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            86 445555555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00016  Score=59.53  Aligned_cols=115  Identities=21%  Similarity=0.265  Sum_probs=72.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCC------------CCCCCCC--CceeEEEEEEEEE----------------CCEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------FQPVHDL--TIGVEFGARMITI----------------DNKP   54 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~------------~~~~~~~--~~~~~~~~~~~~~----------------~~~~   54 (211)
                      ..-++-|+.+...|||||...|....            |......  .-++++.+.-+..                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            34578899999999999999985431            1111111  1122222111111                2235


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL  123 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  123 (211)
                      +.++++|.||+-.|.+.....++-.|+.+.|+|..+.--.+.-..+.+-+.    ..+..++++||+|.
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDR  162 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhH
Confidence            789999999999999999999999999999999876321111111222222    24455788999995

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.68  E-value=0.00019  Score=41.35  Aligned_cols=45  Identities=18%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             cCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237           77 RGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCD  122 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  122 (211)
                      +-.++++|++|++...  +.+.-..++.+++.... ++|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            4467999999998744  45555566777766553 899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.68  E-value=0.00088  Score=49.52  Aligned_cols=89  Identities=21%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      +.+.++||+|......    ....+  ....+-+++|++++.... .+.+...+    ...  + +--+++||.|...  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~--~-~~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF--G-IDGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS--S-TCEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc--c-CceEEEEeecCCC--
Confidence            5688999999654332    11122  125678999999876442 22222222    211  1 2356699999632  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237          128 AVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                        ..-.+..+....+.|+-.++  +|.+|
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT--TGQRV  179 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred             --CcccceeHHHHhCCCeEEEE--CCCCh
Confidence              34556777788888866555  44444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.63  E-value=0.00018  Score=59.93  Aligned_cols=93  Identities=20%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             EEEEEEeCCCcchhhh---hhHHhhcC---CcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      ..+.++||+|......   .....+..   ..-.++|+|.+- ...+..+      +..+.. ....-+|+||.|-.   
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i------~~~f~~-~~~~g~IlTKlDet---  404 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV------VQAYRG-PGLAGCILTKLDEA---  404 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH------HHHhcc-CCCCEEEEeCCCCc---
Confidence            4578999999543321   11112221   233678888864 3322222      222222 22446778999953   


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCCCCCH-HHHH
Q 028237          128 AVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAF  160 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~  160 (211)
                       ...-.+..+....++|+..++  +|.+| +++.
T Consensus       405 -~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~  435 (484)
T PRK06995        405 -ASLGGALDVVIRYKLPLHYVS--NGQRVPEDLH  435 (484)
T ss_pred             -ccchHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence             335556777888888866554  56666 4443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.61  E-value=0.00048  Score=60.33  Aligned_cols=98  Identities=20%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             EEEEEEEeCCCcchhh----hhhHHh--hcCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           54 PIKLQIWDTAGQESFR----SITRSY--YRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .+.+.|+||+|.....    ......  ....+-.++|+|.+. .+.+.++...+...   .. --+-=+|+||.|-.. 
T Consensus       263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~-~~i~glIlTKLDEt~-  337 (767)
T PRK14723        263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AG-EDVDGCIITKLDEAT-  337 (767)
T ss_pred             CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---cc-CCCCEEEEeccCCCC-
Confidence            3568999999943322    111111  223557889999874 33333333222221   10 023467899999632 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEEecCCCCCH-HHHHH
Q 028237          127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFI  161 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~~  161 (211)
                         ..=.+..+....++|+..++  +|.+| +++..
T Consensus       338 ---~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~  368 (767)
T PRK14723        338 ---HLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL  368 (767)
T ss_pred             ---CccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence               34445667777788866554  56666 44433

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.58  E-value=0.00074  Score=43.33  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-hHHhhcCCcEEEEEEE
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD   87 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   87 (211)
                      +++.|..|+||||+...+...-...      +.    +...++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------GK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------CC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999998876542211      11    112222    6779999986543321 2456678899999998


Q ss_pred             CCCHh
Q 028237           88 ITRRE   92 (211)
Q Consensus        88 ~~~~~   92 (211)
                      .....
T Consensus        68 ~~~~~   72 (99)
T cd01983          68 PEALA   72 (99)
T ss_pred             Cchhh
Confidence            87543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.58  E-value=0.0012  Score=49.43  Aligned_cols=61  Identities=23%  Similarity=0.210  Sum_probs=38.5

Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI  144 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      ...+.+|.+|.|+|++- .++..+....+.....   + .++.+|+||.|-.      .......+...+.+
T Consensus       151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el---g~k~i~~V~NKv~e~------e~~~~~~~~~~~~~  212 (255)
T COG3640         151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL---GIKRIFVVLNKVDEE------EELLRELAEELGLE  212 (255)
T ss_pred             ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh---CCceEEEEEeeccch------hHHHHhhhhccCCe
Confidence            34678999999999984 3444444432222222   5 8999999999942      34445555555554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.54  E-value=0.00058  Score=56.51  Aligned_cols=85  Identities=18%  Similarity=0.047  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCcchhhhh----hHH--hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSI----TRS--YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      ..+.|+||+|.......    ...  ....+|.+++|+|++...   .+...........   ...-+|+||.|...   
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a---  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA---  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence            47899999996544321    111  134678999999987642   1112222221111   12467789999632   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEe
Q 028237          129 VSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (211)
                       ..=.+..+....+.|+..++
T Consensus       247 -~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 -KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             -cccHHHHHHHHHCcCEEEEe
Confidence             12334555666677755444

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.54  E-value=0.0023  Score=46.52  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68999999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.53  E-value=0.00055  Score=56.54  Aligned_cols=86  Identities=16%  Similarity=0.045  Sum_probs=47.0

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      .+.+.|+||+|......    ....+  .-..+.+++|+|.....   ++......+....  + ..-+|+||.|-... 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~r-  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDAR-  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc-
Confidence            36789999999543211    11111  22567889999986532   2222222222211  1 24577899996322 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 028237          128 AVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                         .-.+.......++|+..+.
T Consensus       256 ---gG~alsi~~~~~~PI~fig  274 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe
Confidence               2225566677778855544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.50  E-value=0.0023  Score=44.89  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            57899999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.50  E-value=0.00057  Score=55.20  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      .+.+.|+||+|......    ....+..  ..+.+++|+++...  ..++...+   ..+.. --+--+|+||.|-.   
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~---~~f~~-l~i~glI~TKLDET---  355 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTIL---PKLAE-IPIDGFIITKMDET---  355 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHH---HhcCc-CCCCEEEEEcccCC---
Confidence            36789999999743322    2222332  34566777766322  12222222   22221 22346779999963   


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237          128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                       ...-.+..++...+.|+..++  +|.+|.
T Consensus       356 -~~~G~~Lsv~~~tglPIsylt--~GQ~Vp  382 (407)
T PRK12726        356 -TRIGDLYTVMQETNLPVLYMT--DGQNIT  382 (407)
T ss_pred             -CCccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence             234445667777888865554  344444

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.46  E-value=0.0031  Score=50.73  Aligned_cols=99  Identities=14%  Similarity=0.088  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCcchhhhhhHHhh-------cCCcEEEEEEECCCHh---------hHH-------------HHHHH-HHHH
Q 028237           55 IKLQIWDTAGQESFRSITRSYY-------RGAAGALLVYDITRRE---------TFN-------------HLASW-LEDA  104 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~---------~~~-------------~~~~~-~~~l  104 (211)
                      ....+.++.|...-..+...+.       -..|++|.|+|+.+-.         ...             .+..+ ..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4566788888766555444431       2457899999986421         100             01111 2222


Q ss_pred             HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cC-C-cEEEEecCCCCCHHHHHHH
Q 028237          105 RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HG-L-IFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus       105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~-~~~~~sa~~g~~v~~~~~~  162 (211)
                            ...-+|++||+|+.+..  ..+.+++..+. ++ . +++++. ........+|..
T Consensus       173 ------~~AD~IvlnK~Dl~~~~--~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~  224 (341)
T TIGR02475       173 ------ACADLVILNKADLLDAA--GLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL  224 (341)
T ss_pred             ------HhCCEEEEeccccCCHH--HHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence                  12248899999986532  23445555554 33 2 466554 344566666653

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.45  E-value=0.0094  Score=42.63  Aligned_cols=139  Identities=6%  Similarity=0.040  Sum_probs=91.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEe-CCCcchhhhhhHHhhcCCcEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD-TAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .....|+++|..+.++..|...+......        ...            +++.-- .|--.+....    -...|.+
T Consensus        13 ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l------------~Vh~a~sLPLp~e~~~l----RprIDlI   68 (176)
T PF11111_consen   13 LNTATILLVGTEEALLQQLAEAMLEEDKE--------FKL------------KVHLAKSLPLPSENNNL----RPRIDLI   68 (176)
T ss_pred             cceeEEEEecccHHHHHHHHHHHHhhccc--------eeE------------EEEEeccCCCcccccCC----CceeEEE
Confidence            34678999999999999999999853110        111            111111 1111111111    2346999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      +|++|+....+++.++.-+..+....-. -.+.++.+-....+.-.+...++.+++..+++|++...-....+...+-+.
T Consensus        69 VFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqR  147 (176)
T PF11111_consen   69 VFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQR  147 (176)
T ss_pred             EEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHH
Confidence            9999999999998888776666333222 335666666666565667899999999999999998887776655555555


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |.+.+
T Consensus       148 LL~~l  152 (176)
T PF11111_consen  148 LLRML  152 (176)
T ss_pred             HHHHH
Confidence            54443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.45  E-value=0.00029  Score=54.70  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC----CCCCCCceeEEEEEE-EEECCEEEEEEEEeCCC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARM-ITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G   64 (211)
                      ..+++.|+|-||+|||||||.+......    ...-+..|.+....+ +.+... -.+.+.||||
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPG  205 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPG  205 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCC
Confidence            4678999999999999999997543221    222222344444444 444432 3578999999

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.44  E-value=0.00084  Score=44.47  Aligned_cols=99  Identities=14%  Similarity=0.034  Sum_probs=57.4

Q ss_pred             cCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh
Q 028237           13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE   92 (211)
Q Consensus        13 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   92 (211)
                      +..|+||||+...|...-.......     .......... ...+.+.|+|+.....  ....+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~-----~~l~d~d~~~-~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRR-----VLLVDLDLQF-GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCc-----EEEEECCCCC-CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence            4578999998777643211110111     1011111111 1178899999865433  345678889999999877 44


Q ss_pred             hHHHHHHHHHHHHHhcCC-CCcEEEEEec
Q 028237           93 TFNHLASWLEDARQHANA-NMTIMLIGNK  120 (211)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~-~~p~ivv~nK  120 (211)
                      +...+..+++.+...... ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            566666666666554433 4567777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR00959 ffh signal recognition particle protein

Probab=97.44  E-value=0.001  Score=54.94  Aligned_cols=86  Identities=15%  Similarity=0.032  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      .+.+.|.||+|......    ....+  .-..+.+++|+|.....   .+......+....   ...-+|+||.|-... 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~-  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR-  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc-
Confidence            35689999999543321    11111  23577889999987533   2233333332221   234677999995321 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 028237          128 AVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                         .-.+..+....++|+..+.
T Consensus       255 ---~G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       255 ---GGAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe
Confidence               2236666777788855544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.40  E-value=0.00015  Score=49.04  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.00083  Score=53.79  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=28.8

Q ss_pred             EEEEEEEEeCCCcch-----hhhhhHH-hhcCCcEEEEEEECCCHhhHHHH
Q 028237           53 KPIKLQIWDTAGQES-----FRSITRS-YYRGAAGALLVYDITRRETFNHL   97 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~-----~~~~~~~-~~~~~d~~i~v~d~~~~~~~~~~   97 (211)
                      ..+.+.|.||.|...     |..+..- -.-..|-+|||+|.+-.+..+..
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q  232 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ  232 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence            358899999999432     2222221 13458899999999875554433

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.36  E-value=0.00016  Score=52.58  Aligned_cols=23  Identities=35%  Similarity=0.665  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +||+|+|++||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999866

>TIGR00235 udk uridine kinase

Probab=97.35  E-value=0.00023  Score=53.07  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |..+...-|+|+|++|||||||++.+.+.
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            66777888999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK08118 topology modulation protein; Reviewed

Probab=97.35  E-value=0.00018  Score=51.80  Aligned_cols=23  Identities=48%  Similarity=0.626  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.34  E-value=0.0021  Score=44.25  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      -.++|.|++|+|||+|++.+.....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999999986643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.34  E-value=0.0032  Score=45.72  Aligned_cols=86  Identities=26%  Similarity=0.283  Sum_probs=60.9

Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE  132 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (211)
                      ..+.+.++|+|+....  .....+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|+.|...   ....
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            4578999999975432  33456788999999999884 3555566666655543   567899999999643   2355


Q ss_pred             HHHHHHHHcCCcEEE
Q 028237          133 EGEQFAKEHGLIFME  147 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~  147 (211)
                      +.+++.++.+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK07261 topology modulation protein; Provisional

Probab=97.34  E-value=0.00017  Score=52.16  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+|+|+|.+|||||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998643

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.34  E-value=0.00058  Score=50.28  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~   27 (211)
                      +-+.|+|+.||||||+++.+.
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMY   24 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHH
Confidence            568899999999999999874

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.33  E-value=0.00019  Score=50.05  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+++|++|||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999743

...

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.33  E-value=0.014  Score=47.77  Aligned_cols=107  Identities=17%  Similarity=0.046  Sum_probs=58.0

Q ss_pred             EEEEEEEeCCCcchhhh----hhHHhhcC--Cc-EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS----ITRSYYRG--AA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .+.+.++||+|......    ....++..  .+ -.++|+|++...  ..+..   .+..+.. -.+-=+++||.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~---~~~~~~~-~~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKE---IFHQFSP-FSYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHH---HHHHhcC-CCCCEEEEEeccCCC-
Confidence            46789999999654321    12223332  23 588999987642  12222   2223321 124567899999532 


Q ss_pred             CCCCHHHHHHHHHHcCCcEEEEecCCCCCH-HHHHHHHHHHHHHHHh
Q 028237          127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNV-EEAFIKTAATIYKKIQ  172 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v-~~~~~~l~~~~~~~~~  172 (211)
                         ..-.+..++...+.|+..++  +|.+| +++...=.+.+.+.+.
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~l~  368 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKKIN  368 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHhc
Confidence               34445666777788855444  56666 4444433444444443

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.31  E-value=0.0013  Score=45.26  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -|++.|..|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998763

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.30  E-value=0.0024  Score=52.41  Aligned_cols=132  Identities=21%  Similarity=0.156  Sum_probs=68.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC-CCC---------CCC------------CCceeEEEEEE-E-----EECCEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR-FQP---------VHD------------LTIGVEFGARM-I-----TIDNKPIKLQ   58 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~-~~~---------~~~------------~~~~~~~~~~~-~-----~~~~~~~~~~   58 (211)
                      .-++|+|++||||||++..|.... ...         ...            ...+....... .     .+....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            358899999999999999886421 000         000            00111111000 0     0011245778


Q ss_pred             EEeCCCcchhh----hhhHHhhc-----CCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           59 IWDTAGQESFR----SITRSYYR-----GAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        59 i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      ++||+|.....    ..+..++.     ..+-.++|+|++... ....+...+      .. --+-=+|+||.|-..   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f------~~-~~~~glIlTKLDEt~---  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY------ES-LNYRRILLTKLDEAD---  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh------cC-CCCCEEEEEcccCCC---
Confidence            99999964221    11222222     234678899987543 333322222      11 123467799999532   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEe
Q 028237          129 VSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (211)
                       ..-.+..+....+.|+..++
T Consensus       374 -~~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        374 -FLGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             -CccHHHHHHHHHCCCEEEEe
Confidence             23445666777788854444

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.29  E-value=0.00028  Score=41.63  Aligned_cols=22  Identities=36%  Similarity=0.444  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..+|.|+.|+|||||+..+..-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999887543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.29  E-value=0.00024  Score=49.18  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999998763

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.29  E-value=0.013  Score=47.58  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCC---CCceeEEE-----------------EEEEEECC----------EEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD---LTIGVEFG-----------------ARMITIDN----------KPIKL   57 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~-----------------~~~~~~~~----------~~~~~   57 (211)
                      -|+++|+.|+||||-+-.|.....-....   ..++++.+                 ...+....          ..+.+
T Consensus       205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~  284 (407)
T COG1419         205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV  284 (407)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence            58999999999999887775443301111   11111111                 00000000          23678


Q ss_pred             EEEeCCCcchhhh----hhHHhhcCC--cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH
Q 028237           58 QIWDTAGQESFRS----ITRSYYRGA--AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST  131 (211)
Q Consensus        58 ~i~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~  131 (211)
                      .++||.|...++.    ....++..+  .-+.+|++++...  +.+...   +..++..+. --+++||.|-..    ..
T Consensus       285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei---~~~f~~~~i-~~~I~TKlDET~----s~  354 (407)
T COG1419         285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEI---IKQFSLFPI-DGLIFTKLDETT----SL  354 (407)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHH---HHHhccCCc-ceeEEEcccccC----ch
Confidence            9999999765543    233333333  3566677776533  222222   233332122 246689999532    34


Q ss_pred             HHHHHHHHHcCCcEEEE
Q 028237          132 EEGEQFAKEHGLIFMEA  148 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~  148 (211)
                      -.+..+..+.+.|+-.+
T Consensus       355 G~~~s~~~e~~~PV~Yv  371 (407)
T COG1419         355 GNLFSLMYETRLPVSYV  371 (407)
T ss_pred             hHHHHHHHHhCCCeEEE
Confidence            44556666666664333

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.25  E-value=0.00032  Score=50.58  Aligned_cols=29  Identities=24%  Similarity=0.286  Sum_probs=24.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+.....-++|+|.+|||||||++++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            55556667999999999999999999865

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.25  E-value=0.0023  Score=54.25  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      +++-||+||||||.++.|...
T Consensus        48 LlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999998764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00032  Score=52.98  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |.|+|++|||||||+|.+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00036  Score=51.64  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=25.9

Q ss_pred             HHHHHHHcCCcEE--EEecCCCCCHHHHHHHHHHHHHHH
Q 028237          134 GEQFAKEHGLIFM--EASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       134 ~~~~~~~~~~~~~--~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++.++-+..+-+|  +|||.+.+-+.|+++.+.+...+.
T Consensus       148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            3444444444455  599999999999999888776554

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.22  E-value=0.0049  Score=47.86  Aligned_cols=132  Identities=17%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC----------C-----------CCCCceeEEEEEEE--E-------E-CCEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----------V-----------HDLTIGVEFGARMI--T-------I-DNKPI   55 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~----------~-----------~~~~~~~~~~~~~~--~-------~-~~~~~   55 (211)
                      -+++++|++|+||||++..+...-...          .           +....+..+....-  .       . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            589999999999999998775431100          0           00001111111000  0       0 01146


Q ss_pred             EEEEEeCCCcchhhh----hhHHhh--cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           56 KLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      .+.++||+|......    .+..++  ...+-.++|++++. ......   ++   ..+.. -.+-=+++||.|-..   
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~---~~---~~f~~-~~~~~~I~TKlDet~---  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE---II---TNFKD-IHIDGIVFTKFDETA---  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH---HH---HHhCC-CCCCEEEEEeecCCC---
Confidence            789999999653221    122222  24567899999863 332222   22   22222 233467799999643   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEe
Q 028237          129 VSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~s  149 (211)
                       ..-.+..++...+.|+..++
T Consensus       226 -~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 -SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23445666777788855444

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.21  E-value=0.012  Score=42.41  Aligned_cols=84  Identities=12%  Similarity=-0.018  Sum_probs=52.0

Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE  135 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  135 (211)
                      .+.++|+|+.....  ....+..+|.+|++++.... +...+..+++.+....  .....+++|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence            68899999854332  44557889999999988743 4444555555554421  2356789999986432  1222234


Q ss_pred             HHHHHcCCcEE
Q 028237          136 QFAKEHGLIFM  146 (211)
Q Consensus       136 ~~~~~~~~~~~  146 (211)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555677654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.20  E-value=0.00029  Score=52.86  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -|+|+|++|||||||+|.+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999998755

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.19  E-value=0.0004  Score=42.18  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998855

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.18  E-value=0.00024  Score=50.84  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999855

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.16  E-value=0.00033  Score=53.61  Aligned_cols=21  Identities=38%  Similarity=0.446  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      ++|+|++|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999763

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.16  E-value=0.001  Score=48.08  Aligned_cols=44  Identities=25%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           80 AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      |++++|+|+.++.+... ..+...+. ....++|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999988643221 12222211 1223689999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.16  E-value=0.00037  Score=51.12  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999998653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.12  E-value=0.00053  Score=47.69  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.11  E-value=0.0027  Score=44.29  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=39.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEE-ECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT-IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      -|++-|.-|||||||.+.+...--......+++.+. ...+. -+..-+++.+|=....++...+...-+...+++.+|
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl-v~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~~gv~lI  104 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL-VEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDGDGICLI  104 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee-ehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCCCcEEEE
Confidence            478899999999999999876544332222222322 11121 123345555555544444333333333333444444

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.10  E-value=0.00037  Score=51.97  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3556889999999999999999754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.09  E-value=0.0035  Score=46.44  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~   30 (211)
                      |+|+|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.09  E-value=0.0069  Score=50.85  Aligned_cols=87  Identities=8%  Similarity=0.013  Sum_probs=45.5

Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      .+|+|=|+-+....+....+...++.+.. ...|+|++++-+-..........-...+..+.++..+.++.....-+...
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~  275 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF  275 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence            46788787665444333333333333332 47899999987765322111111123333555666666666655445555


Q ss_pred             HHHHHHHH
Q 028237          160 FIKTAATI  167 (211)
Q Consensus       160 ~~~l~~~~  167 (211)
                      +..++...
T Consensus       276 L~ric~~e  283 (634)
T KOG1970|consen  276 LKRICRIE  283 (634)
T ss_pred             HHHHHHHh
Confidence            55554433

>PRK06217 hypothetical protein; Validated

Probab=97.08  E-value=0.0005  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+|+|+|.+|||||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998754

>PRK10646 ADP-binding protein; Provisional

Probab=97.07  E-value=0.0051  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -|++-|.-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            37899999999999999997653

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.07  E-value=0.00054  Score=51.89  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=24.3

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |..-..++|+|+|++||||||+.+.|...
T Consensus         1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            45556789999999999999999998543

>PRK01889 GTPase RsgA; Reviewed

Probab=97.06  E-value=0.0006  Score=55.13  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      -+++|+|.+|+|||||+|.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3689999999999999999987533

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.00064  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      -+|+||+|||||||.+.+.+.+-
T Consensus        33 haiMGPNGsGKSTLa~~i~G~p~   55 (251)
T COG0396          33 HAIMGPNGSGKSTLAYTIMGHPK   55 (251)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            47899999999999999998743

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.06  E-value=0.00053  Score=49.77  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~   27 (211)
                      -.++|+|++|||||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.06  E-value=0.0086  Score=45.08  Aligned_cols=103  Identities=8%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST  131 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~  131 (211)
                      .+.+.|.|+.|.....  ....+..+|.+|+=+-.+.-+.  ......|+..+.+.....+|+-|+.|++.... .....
T Consensus        83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence            3678999999866443  4556677899888776664332  22233455555444456899999999997421 11112


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237          132 EEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      ..+..+.+  ++|++.+...+..-..++|.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22233332  58888888777666666555

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00098  Score=53.37  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      +.++|++||||||+++.+.+=..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67999999999999999986533

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.04  E-value=0.00062  Score=47.50  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|+.|+|||||++.|+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.04  E-value=0.0019  Score=46.10  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+++.|++|||||||++.+..-
T Consensus        31 ~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhc
Confidence            5899999999999999998743

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.02  E-value=0.0006  Score=49.94  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999654

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.02  E-value=0.00077  Score=50.77  Aligned_cols=24  Identities=38%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      +|+|+|++|||||||++.+.+-..
T Consensus        55 ~vGiiG~NGaGKSTLlkliaGi~~   78 (249)
T COG1134          55 RVGIIGHNGAGKSTLLKLIAGIYK   78 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhCccC
Confidence            799999999999999999887644

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.00055  Score=52.22  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|+|||||++.+++-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999873

>PRK03839 putative kinase; Provisional

Probab=97.00  E-value=0.00059  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +|+|+|.+||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.00  E-value=0.00064  Score=44.91  Aligned_cols=20  Identities=40%  Similarity=0.745  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028237            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~   27 (211)
                      .++|+|++|||||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.99  E-value=0.00064  Score=46.24  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998765

...

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.00079  Score=53.59  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~   30 (211)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999997653

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.97  E-value=0.00035  Score=50.48  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      ..-++|.|++|+|||||++.|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3568999999999999999998765

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.97  E-value=0.00094  Score=49.66  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.96  E-value=0.00087  Score=50.03  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.96  E-value=0.00093  Score=50.15  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999998763

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=96.96  E-value=0.0059  Score=50.82  Aligned_cols=17  Identities=35%  Similarity=0.540  Sum_probs=16.0

Q ss_pred             eEEEEcCCCCCHHHHHH
Q 028237            8 KYIIIGDTGVGKSCLLL   24 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~   24 (211)
                      -|+|+|++|||||||++
T Consensus        34 iv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        34 LLFLCGSSGDGKSEILA   50 (504)
T ss_pred             EEEEECCCCCCHHHHHh
Confidence            48999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.95  E-value=0.00092  Score=49.08  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.95  E-value=0.00096  Score=49.79  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=23.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .....|+|.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999998764

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.94  E-value=0.0018  Score=43.92  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -|++-|+-|||||||++.+...-
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999987643

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.94  E-value=0.014  Score=43.84  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~   27 (211)
                      -.++|.|++++|||||++.+.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            468999999999999999976

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.94  E-value=0.00092  Score=50.10  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      =.++|+|++|||||||++.+.+..
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999999764

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.94  E-value=0.0087  Score=46.42  Aligned_cols=84  Identities=25%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      -|+|.|++||||||+++.++....... ......+ ...++.+.+ ..++.+....| ..+.......++.--=+|++-.
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~-~~iitiE-dp~E~~~~~-~~q~~v~~~~~-~~~~~~l~~~lR~~PD~i~vgE  157 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPE-KNIITVE-DPVEYQIPG-INQVQVNEKAG-LTFARGLRAILRQDPDIIMVGE  157 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCC-CeEEEEC-CCceecCCC-ceEEEeCCcCC-cCHHHHHHHHhccCCCEEEecc
Confidence            489999999999999999876532211 0000000 011111222 11222211111 2355555566665555666677


Q ss_pred             CCCHhhHH
Q 028237           88 ITRRETFN   95 (211)
Q Consensus        88 ~~~~~~~~   95 (211)
                      +.++++..
T Consensus       158 iR~~e~a~  165 (264)
T cd01129         158 IRDAETAE  165 (264)
T ss_pred             CCCHHHHH
Confidence            77776544

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.93  E-value=0.00084  Score=45.83  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999865

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.93  E-value=0.00089  Score=45.80  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=22.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP   33 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~   33 (211)
                      -.++|+|++|+||||+++.+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            368999999999999999998765443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.93  E-value=0.00078  Score=51.14  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..++++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999999999999998754

This is thought to be an ATPase involved in viral DNA packaging [].

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.92  E-value=0.0087  Score=49.53  Aligned_cols=51  Identities=31%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             hhhHHhhcCCcEEEEEEE-CCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237           70 SITRSYYRGAAGALLVYD-ITRRETFNHLASWLEDARQHANANMTIMLIGNKCD  122 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d-~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  122 (211)
                      ++.+..|++++.+||  | ++.--+..++..++..+......++.+|++-.|.+
T Consensus       150 EIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         150 EILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            355566777776654  3 23223445566677777666667888888887765

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.92  E-value=0.00078  Score=48.92  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.00065  Score=50.25  Aligned_cols=20  Identities=40%  Similarity=0.587  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      .+++|++|||||||++.|-.
T Consensus        36 TAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            58999999999999988863

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.92  E-value=0.0011  Score=50.49  Aligned_cols=23  Identities=39%  Similarity=0.445  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.0017  Score=52.44  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=50.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEEC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI   88 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   88 (211)
                      |-++|.+|||||||+.-|++-..+..-           .+.++++++     |--..++|+.+....+.+-+.+=-+...
T Consensus       352 vFliG~NGsGKST~~~LLtGL~~PqsG-----------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~  415 (546)
T COG4615         352 VFLIGGNGSGKSTLAMLLTGLYQPQSG-----------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP  415 (546)
T ss_pred             EEEECCCCCcHHHHHHHHhcccCCCCC-----------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence            678999999999999999876443321           245566543     4344567777666665544433333344


Q ss_pred             CCHhhHHHHHHHHHHHH
Q 028237           89 TRRETFNHLASWLEDAR  105 (211)
Q Consensus        89 ~~~~~~~~~~~~~~~l~  105 (211)
                      ....+.+.+..|++.+.
T Consensus       416 e~~as~q~i~~~LqrLe  432 (546)
T COG4615         416 EGKASPQLIEKWLQRLE  432 (546)
T ss_pred             ccCCChHHHHHHHHHHH
Confidence            44456667777777663

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.92  E-value=0.0041  Score=44.96  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=26.6

Q ss_pred             HHHHHHHcCCcEE--EEecCCCCCHHHHHHHHHHHHHHH
Q 028237          134 GEQFAKEHGLIFM--EASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       134 ~~~~~~~~~~~~~--~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      .+.++-+..+-+|  ++||.+.+=+-|++..|.+...+.
T Consensus       164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            3444444445455  599999999999999888776654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.91  E-value=0.0011  Score=49.68  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999753

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.91  E-value=0.0008  Score=49.74  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.91  E-value=0.00033  Score=56.14  Aligned_cols=82  Identities=22%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--hhhhhHHhhcCCcEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--FRSITRSYYRGAAGA   82 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~   82 (211)
                      ..|-|+++|.|++||||+||.|-....-...... |.+..=+.+++   -..+-++|+||.--  .+......+   -++
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---kGv  378 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---KGV  378 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhcccccccCCC-CcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---hce
Confidence            3578999999999999999999877654332222 22221111111   23567899999421  112122222   255


Q ss_pred             EEEEECCCHhh
Q 028237           83 LLVYDITRRET   93 (211)
Q Consensus        83 i~v~d~~~~~~   93 (211)
                      +=|=.+.+|+.
T Consensus       379 VRVenv~~pe~  389 (572)
T KOG2423|consen  379 VRVENVKNPED  389 (572)
T ss_pred             eeeeecCCHHH
Confidence            56666666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		9e-85
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-84
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-63
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-62
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		7e-56
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-55
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-53
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-52
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-51
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-49
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-49
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-49
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-49
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-49
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-48
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-48
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-48
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-48
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		8e-48
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-48
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-48
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-47
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-47
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-47
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-47
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-47
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-46
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-46
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-46
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		7e-46
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-45
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-44
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-44
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-44
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-44
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-44
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-43
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-43
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-43
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-42
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-42
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-42
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-42
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-41
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		7e-40
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-39
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-39
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-38
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-38
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-38
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		5e-38
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-38
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		7e-38
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-38
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-38
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		9e-38
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-37
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-37
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-37
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-37
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-37
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-37
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-37
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-37
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-37
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-37
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-37
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-37
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-36
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-36
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-35
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-35
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-34
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		6e-34
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-33
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		8e-33
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-32
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-32
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-32
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-32
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-31
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-31
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-31
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-31
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-30
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-29
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-29
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		7e-29
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-28
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-26
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-26
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		8e-26
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-25
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-22
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-22
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-22
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		6e-22
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-22
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		7e-22
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		8e-22
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-21
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-21
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-21
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-21
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-21
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-21
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-21
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-21
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-20
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-20
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-20
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-19
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-19
1byu_A	216	Canine Gdp-Ran Length = 216		1e-19
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-19
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-19
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-19
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-19
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-19
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-18
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-18
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-17
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-17
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-17
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-17
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-17
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-17
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-17
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-17
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-17
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-17
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-17
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-17
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		5e-17
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		5e-17
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		6e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-17
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-17
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		7e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-17
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		7e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		8e-17
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		8e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-17
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-16
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-16
1mh1_A	186	Small G-Protein Length = 186		1e-16
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-16
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-16
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-16
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-16
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-16
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-16
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-16
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-16
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-16
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-16
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-16
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		4e-16
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-16
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		4e-16
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		4e-16
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-16
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-16
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-16
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-16
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-16
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-16
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		5e-16
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-16
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		8e-16
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		9e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-15
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-15
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-15
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-15
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-15
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-15
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-15
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-15
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-15
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		4e-15
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-15
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-15
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		5e-15
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		6e-15
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-14
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-14
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-14
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-13
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-13
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		7e-13
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		7e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-12
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-12
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		9e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-10
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-10
2kb0_A	178	Cdc42(T35a) Length = 178		2e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		6e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-09
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-09
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-09
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-07
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-07
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-07
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-06
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		2e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		2e-06
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		4e-06
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		4e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		4e-06
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-06
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		6e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		8e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		3e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		3e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		5e-04

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  308 bits (790), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 147/173 (84%), Positives = 155/173 (89%)
Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           +YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID K IKLQIWDTA
Sbjct: 19  SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 78
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123
           GQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+++NM IMLIGNK DL
Sbjct: 79  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
             RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ G+F
Sbjct: 139 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  308 bits (790), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 146/169 (86%), Positives = 153/169 (90%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIWD
Sbjct: 6   AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 65
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK 
Sbjct: 66  TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 125
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+K
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/171 (64%), Positives = 137/171 (80%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWD
Sbjct: 26  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQ  FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK 
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+ IQ
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/168 (65%), Positives = 136/168 (80%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK 
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 129/173 (74%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           +LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R++ +  K +KLQIWDTAG
Sbjct: 24  FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FRS+TRSYYRGAAGALLVYDIT RET+N LA+WL DAR  A+ N+ ++L GNK DL 
Sbjct: 84  QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 177
             R V+  E  +FA+E+ L+F+E SA T +NVEEAF+K A TI  KI  G  D
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 132/176 (75%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 177
           DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G  D
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 128/169 (75%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWD
Sbjct: 7   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 66
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK 
Sbjct: 67  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 126
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL   R V+  E  +FA+E+ L+F+E SA T ++VEEAF++ A  I  K
Sbjct: 127 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/169 (56%), Positives = 127/169 (75%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWD
Sbjct: 4   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAG E FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK 
Sbjct: 64  TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 123
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL   R V+  E  +FA+E+ L+F+E SA T ++VEEAF++ A  I  K
Sbjct: 124 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 126/170 (74%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I+++NK +KLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T R++F+++  W+++  ++A  N+  +L+GNKCD
Sbjct: 66  AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           L  +R V+++EG + A  HG+ F+E SAK A NVE+AF   A  I K++Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 123/172 (71%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174
           L  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++  G
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 117/168 (69%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           SY YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWD
Sbjct: 16  SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK 
Sbjct: 76  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DL H RAV T+E   FA+++GL F+E SA  + NVE AF      IY+
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 122/169 (72%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 122/169 (72%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 22  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCD
Sbjct: 82  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  189 bits (480), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 115/167 (68%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           L H RAV T+E   FA+++ L F+E SA  + NVEEAF      IY+
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 122/169 (72%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGK+CLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCD
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 120/168 (71%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 30  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCD
Sbjct: 90  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           L  ++ V     ++FA   G+ F+E SAK A NVE++F   AA I K+
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 115/166 (69%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK D
Sbjct: 86  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           L H RAV T+E   FA+++GL F+E SA  + NVE AF      IY
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 121/169 (71%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y  LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 3   YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCD
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 121/169 (71%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+G KCD
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 124/180 (68%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y  LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + I+ K IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R++A+ N+ + LIGNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182
           LAH RAV TEE + FA+E+ L+F E SA  ++NV++AF +   TIY+K+     D+ + S
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 121/171 (70%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKC
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           D+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I  K+ 
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 115/167 (68%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 5   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK D
Sbjct: 65  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           L H RAV T+E   FA+++GL F+E SA  + NVE AF      IY+
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 114/166 (68%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK D
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           L H RAV T+E   FA+++GL F+E SA  + NVE AF      IY
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 119/168 (70%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAG
Sbjct: 5   YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+ 
Sbjct: 65  QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
            +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I  K+ 
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 172

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 120/169 (71%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N+  +L+GNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE+AF+  AA I K++
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 120/169 (71%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N+  +L+GNK D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L  ++ V     ++FA   G+ F+E SAK A NVE+AF+  AA I K++
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 113/166 (68%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ I L+GNK D
Sbjct: 68  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           L H RAV T+E   FA+++GL F+E SA  + NVE AF      IY
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 113/166 (68%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ I L+GNK D
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           L H RAV T+E   FA+++GL F+E SA  + NVE AF      IY
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 118/164 (71%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
           FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
            V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 120/177 (67%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I ++NK IK QIWDT
Sbjct: 7   YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R++A+ N+ + LIGNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 179
           LAH RAV T+E + FA E+ ++F E SA  + NV++AF +    I++ +     D+S
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLS 183

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWD 61
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + I + +NK IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +R+IT +YYRGA GALLVYDIT++ +F ++  WL++ R +A++N+ I+L+GNK 
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           DL H R ++  +  Q+AK+  L F+E SA  A NVE AF +    IY
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY 170

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           SY  + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQ+WD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++L+GNK 
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 117/165 (70%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + + +D K +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A + +  +L+GNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           L  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 117/165 (70%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + + +D K +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A + +  +L+GNKCD
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           L  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 117/165 (70%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + + +D K +KLQIWDT
Sbjct: 18  YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A + +  +L+GNKCD
Sbjct: 78  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           L  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++L+GNK D+  
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 121
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
            R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++L+GNK D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
            R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQIWDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++L+GNK D   
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XE 121
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
            R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  170 bits (431), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQ+WDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++L+GNK D   
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XE 121
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
            R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/169 (46%), Positives = 111/169 (65%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y ++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R + +    +K QIWDT
Sbjct: 22  YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA A + +ML+GNK D
Sbjct: 82  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L+  R V TEE   FA+ +GL+F+E SA  + NVE AF      I+ K+
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 110/165 (66%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y +LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + + I+ + +KLQIWDT
Sbjct: 23  YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +L+GNK D
Sbjct: 83  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           LA RR VS +  E+F++   + ++E SAK + NVE+ F+  A  +
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWD 61
           Y   FK +++GD+GVGK+CLL++F D  F     + T+G++F  +++ +D   +KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++ +ML+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           D AH R V  E+GE+ AKE+GL FME SAKT  NV+ AF   A  + ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/169 (46%), Positives = 111/169 (65%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y ++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R + +    +K QIWDT
Sbjct: 7   YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA A + +ML+GNK D
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L+  R V TEE   FA+ +GL+F+E SA  + NVE AF      I+ K+
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y +LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I  K +KLQIWDT
Sbjct: 26  YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A +N+  +LIGNK D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 123 LAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATI 167
           L+  R VS  E +  A+ + ++  +E SAK + NVEEAF++ A  +
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + I  ++K IKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKC
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           D+   R VS+E G Q A   G  F EASAK   NV++ F +    I +K
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + I++D    KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAH 125
            FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  +  L+GNK D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYG 184
            R V   EG +FA++H  +F+EASAKT   V+ AF +    I +    G+++  N++ G
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ--TPGLWESENQNSG 191

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 109/172 (63%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKC
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           D+   R V TE+G+  A++ G  F EASAK   +V +AF +    I  K+ D
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y +LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R + I+ + +KLQIWDT
Sbjct: 6   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +L+GNK D
Sbjct: 66  AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
              R+ V TE+  +FA + G+   E SAK   NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ A+ ++ I L GNK DLA++
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           R V  EE + +A ++ L+FME SAKTA NV + F+  A  + K
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 105/158 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+ N+ I L GNK DLA +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           RAV  +E + +A ++ L+FME SAKTA NV E F+  A
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 105/173 (60%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           + Y FK +IIG++ VGK+  L ++ D  F P    T+G++F  + I  ++K IKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AG E +R+IT +YYRGA G +L YDIT  E+FN +  W    + ++  N  ++L+GNKCD
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 175
               R VS+E G Q A   G  F EASAK   NV++ F +    I +K  + +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESL 177

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           +  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + + +  K I+LQIWDTAG
Sbjct: 25  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++L+GNK D  
Sbjct: 85  QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 125 HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
             R ++ ++GE+FA++  G+ F EASAK   NV+E F+K    I KK+
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 107/161 (66%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F     W++D R    +++ IML+GNK DLA +
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 106/169 (62%)
Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           Y+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + +   +K IKLQIWDTAG
Sbjct: 21  YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++L+GNKCDL 
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
             R V  E+G + A + G  F EASAK   NV++ F +    I +K+ +
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 107/163 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 108/161 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F   + W++D R    +++ IML+GNK DLA +
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R ++ EEGEQ AKE  ++F+E SAKT  NV++ F + A+ +
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 106/163 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+F E SAKT+ NV E F   A  + K
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 109/161 (67%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F+  + W++D R    +++ IML+GNK DL+ +
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VSTEEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 102/157 (64%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
           + S+   YYRGAA A++V+D+T + +F     W+++ +   N NM + L GNK DL   R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
            V+ E+ + +A+E+GL FME SAKTA NV+E F + A
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TI   F  + + +D+  +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+ N+ I L GNK DLA +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           RAV  +E + +A ++ L+FME SAKTA NV E F+  A
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 104/158 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ A+ N+ I L GNK DLA +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           RAV  +E + +A ++ L+FME SAKTA NV E F+  A
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F     W++D R    +++ IML+GNK DLA +
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F     W++D R    +++ IML+GNK DLA +
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 105/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F     W++D R    +++ IML+GNK DLA +
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 105/161 (65%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +  A++VYDIT   +F     W++D R    +++ IML+GNK DLA +
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 88/115 (76%)
Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 70  SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           +IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL 
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 99/161 (61%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + +   N+  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH   ++ + + GNKCDL   
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R V   + + +A     IF+E SAK A N+ E FI+ +  I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 98/161 (60%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + +   N+  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH   ++ + + GNKCDL   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R V   + + +A     IF+E SAK A N+ E FI+ +  I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  140 bits (353), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 101/161 (62%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K + +G+  VGK+ ++ +F    F   +  TIG++F ++ + +D  P++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT R++F +   W++D       ++ I L+GNK DL   
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R V+ EEG Q A+E+   F E SAK   N++  F KTA+ +
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 5/168 (2%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S + +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R + ID + IK+Q+WD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 62  TAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGN 119
           TAGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH  AN +  +L+GN
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135
Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN---VEEAFIKTA 164
           KCDL     V T+  ++FA  H +   E SAK   +   VE  F+  A
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++G+  VGKS ++L+F    F    + TIG  F  + +TI+   +K +IWDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-- 125
           F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I L+GNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 126 -RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
             R V+ EEGE+ A+E GL+F E SAKT +NV + F+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F    F      TIG  F  + +   N+  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKCDL+  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           R V  ++ +++A+  G I +E SAK A N+EE F
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R + ID + IK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 66  ESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDL 123
           E FR S+ + YYR     + VYD T   +F+ L +W+E+ +QH  AN +  +L+GNKCDL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE--EAFIKTAA 165
                V T+  ++FA  H     E SAK   + +  EA   T A
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLA 192

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  + +         
Sbjct: 22  YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+  ++  ANA  
Sbjct: 82  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYC 139
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            N  I+LIGNK DL  +R V+  +  + A ++G+ + E SA T QNVE+A       I K
Sbjct: 140 ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
Query: 170 KIQDGV 175
           +++  V
Sbjct: 200 RMEQCV 205

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  D +         
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
             + LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+  ++  ANA  
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            N  I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++       I K
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
Query: 170 KIQDGV 175
           +++  V
Sbjct: 186 RMEKCV 191

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  D +         
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
             + LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+  ++  ANA  
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            N  I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++       I K
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
Query: 170 KIQDGV 175
           +++  V
Sbjct: 186 RMEKCV 191

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF-GARMITIDNKP------- 54
           Y YL K++ +GD+GVGK+ +L Q+TD +F      T+G++F   R++   N P       
Sbjct: 8   YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 55  --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NAN 111
             I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + N
Sbjct: 68  QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
             I+L GNK DL  +RAV  EE  + A+++G+ + E SA    N+  A       I K++
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187
Query: 172 QDGV 175
           +  V
Sbjct: 188 ERSV 191

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 15/170 (8%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  D +         
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
             + LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W   ++  ANA  
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159
            N  I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 15/170 (8%)
Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------- 53
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  D +         
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 54  -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-- 110
             + LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W   ++  ANA  
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWX--SQLQANAYC 125
Query: 111 -NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159
            N  I+LIGNK DL  +R V+  +  + A+++G+ + E SA T QNVE++
Sbjct: 126 ENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S AY FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I  K + L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + ++GNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           DL   R VS +E E +A+  G      SAK  + +EE F+
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + + +D++ + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL +R+  +         ++ + + E SAK A NVE+AF   A    K+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + + +D++ + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL +R+  +         ++ + + E SAK A NVE+AF   A    K+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K ++ GD  VGKS  L++     F+     T+GV+F  + + +D +   LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IML+GNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 127 RAVSTEE------GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            A   ++      GE+ A  +G +F E SAK   N+ EA +  A  + K+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S AY FK +++G+  VGK+ L+L++ + +F   H  T+   F  + + I  K + L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + ++GNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           DL   R VS +E E +A+  G      SAK  + +EE F+
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S AY FK +++G+  VGK+ L+L++ + +F   H  T+   F  + + I  K + L IWD
Sbjct: 16  SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 75
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + ++GNK 
Sbjct: 76  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 135
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           DL   R VS +E E +A+  G      SAK  + +EE F+
Sbjct: 136 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 175

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + + +D++ + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           D  +R+  +         ++ + + E SAK A NVE+AF   A    K+
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + + +D++ + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED----ARQHANANMTIMLIGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A      N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL +R+  +         ++ + + E SAK A NVE+AF   A    K+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAG 64
           + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + +T+D +K   +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN----MTIMLIGNK 120
           QE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 CDLAH-RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQ 172
            D    ++ VS +  ++ AK  G I     SAK A NV+ AF + A +  ++ Q
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +D   + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
           E FRS+   +YRG+   LL + +   ++F +L++W ++   +A+     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           D++ R+ VSTEE + + +++G   + E SAK A NV  AF
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +D   + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
           E FRS+   +YRG+   LL + +   ++F +L++W ++   +A+     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           D++ R+ VSTEE + + +++G   + E SAK A NV  AF
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +D   + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
           E FRS+   +YRG+   LL + +   ++F +L++W ++   +A+     +   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           D+  R+ VSTEE + + K++G   + E SAK + NV  AF
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++G+  VGKS ++ ++    F   +  TIGV+F  R I ++++ ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F +IT++YYRGA   +LV+  T RE+F  ++SW E        ++   L+ NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             +  EE E  AK   L F   S K   NV E F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           + L K I++GD GVGKS L+ ++   +F      TIGVEF  R + +D + + LQIWDTA
Sbjct: 5   SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGN 119
           GQE F+S+   +YRGA   LL + +  R++F +L +W ++   +A+     +   +++GN
Sbjct: 65  GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGN 124
Query: 120 KCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           K D    R V+TEE + +  E+G   ++E SAK   NV  AF
Sbjct: 125 KVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
            +R VS EE +  A++  + ++E SAKT  NV++ F      I  +K++D 
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
            +R VS EE +  A++  + ++E SAKT  NV++ F      I  +K++D 
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
            +R VS EE +  A++  + ++E SAKT  NV++ F      I  +K++D 
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            +R VS EE +  A +  + ++E SAKT  NV++ F
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 126 RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            R V  E+G+  A++ +   F+E+SAK+  NV E F
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIW 60
           S+    K +++GD   GK+ L   F  + F   +  TIG++F  R IT+  N  + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLI 117
           D  GQ     +   Y  GA G LLVYDIT  ++F +L  W   ++   + +     + L+
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           GNK DL H R +  E+  +F +E+G      SAKT  +V   F K AA I
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDL 123
           E + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             RR V  EE    A+E G+ ++E SAKT  NV++ F      I  K
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDL 123
           E + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             RR V  EE    A+E G+ ++E SAKT  NV++ F      I  K
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 126 RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            R V  E+G+  A++ +   F+E+SAK+  NV E F
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R V T++ +  A+ +G+ F+E SAKT Q V++AF      I K
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 10/175 (5%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M+ +   K  I G  GVGKS L+++F  KRF   +D T+   +     TID++ + ++I 
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEIL 81
Query: 61  DTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIML 116
           DTAGQE   +I R  + R   G +LVYDIT R +F     L + L++ ++  N  +T++L
Sbjct: 82  DTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLIL 137
Query: 117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 170
           +GNK DL H R VSTEEGE+ A E    F E SA T + N+ E F +    + ++
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY-KKIQDG 174
            +R VS EE +  A++  + ++E SAKT  NV++ F      I  +K++D 
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 40/202 (19%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT----------------- 49
           +K +++G++ VGKS ++L+ T   F    + TIG  F   ++                  
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 50  -----------IDNK---------PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89
                      I N+          IK  IWDTAGQE + SI   YYRGA  A++V+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 90  RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149
              T +   +W+   +   ++N  I+L+ NK D  ++  V   E +++A+++ L+F++ S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 150 AKTAQNVEEAFIKTAATIYKKI 171
           AKT  N++  F   A  IYK I
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAF 160
            R V  E+G+  A++     F+E+SAK+  NV E F
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAF 160
            R V  E+G+  A++     F+E+SAK+  NV E F
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI   +  + + ID++  +L I DTAGQE F ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 79  AAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G LLV+ +T R +F  +  +     R        ++LIGNK DL H+R V+ EEG+Q 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           A++  + +MEASAK   NV++AF +    I K
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MS +   K + +GD  VGK+C+L+ +T  +F   +  T+   F A  + +D + + L +W
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLW 62
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+ A  N+ I+L+G 
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121
Query: 120 KCDLA--------HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           K DL         H   +++ +GE+  K+ G   ++E S+KT QNV+  F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R V T++ +  A+ +G+ F+E SAKT Q V++AF      I K
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MS +   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +D   + L +W
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLW 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++A  W+ + R +A   + I+L+G 
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
Query: 120 KCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           K DL   +           ++T +GE+  K  G  I++E S+KT QNV+  F
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMITIDNKPIKLQIWDTAGQ 65
           +K  +IGD GVGK+  + +  D RF+  ++ T+G V      +      IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E    +   YY GA+GA+L +D+T R T  +LA W+++ +        I++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           R+ +S +   +  K     + E SAKTA N    F+   A I+    D +F VSN
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL-ARIFTGRPDLIF-VSN 184

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           +  +  +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           +  +  +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           +  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 123 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 158

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MS A   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +D   + L +W
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGN 119
           DTAGQE +  +    YRGA   LL + +  + ++ ++   WL + + +A   + I+L+G 
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGT 118
Query: 120 KCDLAHRR----------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           K DL   +          +++T +GE+  K  G + ++E S+KT QNV+  F
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++ +D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI   +  ++ ++D  P +L I DTAGQE F ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 79  AAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G LLV+ I  R++FN +   + +  R     +  ++L+GNK DL  +R V   E   F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
              H + + EASAK   NV+EAF +    + K
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           +  +  +   F ++  L + + SAK+  N E+ F+  A  +
Sbjct: 126 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           +  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 132 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 167

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 162

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +      +  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFL 167

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+G   VGK+ L  QF +  F   +D T+   + ++++T+      L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHR 126
           +  +  S+  G  G +LVY +T   +F  + S  +   + H    + ++L+GNK DL+  
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R V   EG++ A+  G  FME+SA+  Q  +  F K    I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  +++ + ++L+GNKCDL  R  V T++  + 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHEL 151
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           AK +G+ F+E SAKT Q VE+AF
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAF 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           +  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 160

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164
           +  +  +   F ++  L + + SAK+  N E+ F+  A
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA 159

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAF 163

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S A   K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WD
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWD 63
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK 
Sbjct: 64  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 123
Query: 122 DL---AHRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           DL    H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 124 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 68
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  TIGVE        +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161
           +  +  +   F ++  L + + SAK+  N E+ F+
Sbjct: 132 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFL 164

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F P +D TI   +  +   IDN+   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H R V+ ++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
           A ++ + ++E SAK    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F P +D TI   +  +   IDN+   L + DTAGQE F ++   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 79  AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H R V+ ++G++ 
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
           A ++ + ++E SAK    NV++ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  ++IT++ +   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IML+GNK DL 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GN+CDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  ++IT++ +   LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IML+GNK DL 
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 119
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MS +   K + +GD  VGK+CLL+ +T   F   +  T+   F A ++ ++   + L +W
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLW 61
Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + +A   + I+L+G 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120
Query: 120 KCDLAHRR----------AVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           K DL   +           ++T +GE+  K  G   ++E S+K+ +NV+  F
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D +I   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAF 162

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D +I   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F   +D TI   F  ++IT++ +   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IML+GNK DL 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           K+ L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F    D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL  R  V T++ +  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR-TVDTKQAQDL 151
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           A+ +G+ F+E SAKT Q V++AF      I K
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DT GQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG+E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DT GQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 125 HRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
           H R          V +EEG   A       ++E SAKT + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++I+ D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IML+GNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             R V + E E  A+     FME SAK   NV+E F
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y     +L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 9/177 (5%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITIDNKPIKLQIW--DTA 63
           K  ++G+  VGKS L+  FT K  +F   + +T GVE     +TI +  + ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNK 120
           G + ++     Y+ G   A+LV+D++  E+F    +W E    AR      +  +L+ NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 121 CDLAHRR-AVSTEEGEQFAKEHGLIFMEASAKTA-QNVEEAFIKTAATIYKKIQDGV 175
            DL  +R  V  +  + +A  + L F + SA    ++ +  F+  A T Y+  +D V
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 125 HRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
           H R          V +EEG   A       ++E SAKT + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-- 125
           +       Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL +  
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 ----------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                     +  V   EG   A   G   +ME SAKT   V E F
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K  I+G   VGKS L +QF + +F    D TI   F  ++IT++ +   LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLA---SWLEDARQHANANMTIMLIGNKCDLA 124
           +    ++Y     G +LVY +T  ++F  +      L D        + IML+GNK DL 
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 122
Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             R +S EEG+  A+     F+E+SAK  Q   + F
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAF 161

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAG E + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNK DL   R V T++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           A+ +G+ F+E SAKT Q V++AF      I K
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNK DL   R V T++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 138 AKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           A+ +G+ F+E SAKT Q V++AF      I K
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ A W  + R H   N  I+L+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
             +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ A W  + R H   N  I+L+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
             +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLA 124
           E +  +    Y      L+ + +    +F+H+ A W  + R H   N  I+L+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
             +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F   +D TI   +  +   IDN+   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H R V+ ++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
           A ++ + ++E SAK    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF  K F   +D TI   +  +   IDN+   L + DTAGQE F ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79  AAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H R V+ ++G++ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKEHGLIFMEASAKTAQ-NVEEAF 160
           A ++ + ++E SAK    NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD G GK+ LL+ F D  F   +  T+   +   +  +  KP+ L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDD 94
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
           +  +   +Y  A+  LL +D+T   +F+++ +       H    + I+++G K DL   +
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 128 A------------VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTA 164
           +            V+   G++ A+  G + ++E SA+   NV   F + A
Sbjct: 155 SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F    D TI   +  + + ID +   L I DTAGQE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  +++ + ++L+GNK DLA R  V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 125 HRR---------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           H R          V  EEG   A   G   +ME SAKT   V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T       +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---A 124
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 125 HRR---------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
           H R          V +EEG   A       ++E SAKT + V E F
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G +LVY +  +++F  +    +   R      + ++L+GNK DL   R VS+ EG   
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+E G  FME SAK+   V+E F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   N  I+L+G K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   +  I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   A+E G + ++E SA T + ++  F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTA QE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  +++ + ++L+GNK DLA R  V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L +Q     F   +D TI   +  + + ID +   L I DTA QE + ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQF 137
             G L V+ I   ++F  +  + E  ++  +++ + ++L+GNK DLA R  V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAAR-TVESRQAQDL 133
Query: 138 AKEHGLIFMEASAKTAQNVEEAF 160
           A+ +G+ ++E SAKT Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   +  I+L+G K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   A+E G + ++E SA T + ++  F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    +F ++ A W  + R H   +  I+L+G K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            +             ++  +G   A+E G + ++E SA T + ++  F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+CLL+ F+   F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +   ++  ++   W+ + + H   N+ I+L+ NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 124 AHRR---------AVSTEEGEQFA-KEHGLIFMEASAKTAQNVEEAF-IKTAATIYKK 170
            H R          V T++G   A +     ++E SAKT + V E F   T A + K+
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D+KP+ L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ A W  + R H   +  I+L+G K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 126 RR------------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            +             ++  +G   AKE   + ++E SA T + ++  F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D+KP+ L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ A W  + R H  +   I+L+G K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 126 RR------------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            +             ++  +G   AKE   + ++E SA T + ++  F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D KP+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 67  SFRSITRSYYRGAAGALLVYDITRR-------ETF-------------NHLASWLEDARQ 106
            +  +    Y    G     DIT R       + F             N  A W  + R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 107 HANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEASAKTA 153
           H   N  I+L+G K DL   +             ++  +G   AKE G + ++E SA T 
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 154 QNVEEAF 160
           + ++  F
Sbjct: 184 RGLKTVF 190

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L++ +++GD GVGK+ L   F  K+ + +H+  +G +   R +T+D +   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 66  ESF-RSITR-SYYRGAAGALLVYDITRRETFNHLASW-LEDARQHANANMTIMLIGNKCD 122
           E   +S ++ S  +G +  ++VY I  R +F   +   ++  R H   ++ I+L+GNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           LA  R VS EEG   A      F+E SA    NV E F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+   + A ++ +D+KP+ L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH 125
            +  +    Y      L+ + +    ++ ++ A W  + R H  +   I+L+G K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 126 RR------------AVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            +             ++  +G   AKE   + ++E SA T + ++  F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLLL F+       +  T+   F + ++   N+   L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +  +    Y  +   LL + +  R +F+++++  E   +H       +L+G K DL   
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142
Query: 127 RA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 168
            +  V+ +EG+   ++ G + ++EAS+     + E F K+   I+
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLLL F+       +  T+   F + ++   N+   L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +  +    Y  +   LL + +  R +F+++++  E   +H       +L+G K DL   
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 141
Query: 127 RA--VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIY 168
            +  V+ +EG+   ++ G + ++EAS+     + E F K+   I+
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+ L++ +T   + P   +    +  + ++++D +P++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           F  +    Y      LL + +    +F +++  W+ + R H      I+L+G + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       + V  E  +  A+E     ++E SA T +N++E F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           A + K +++GD  VGK+CLL+ + +  F   +  T+   + A  +T+  K   L ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTA 74
Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCD 122
           GQE +  +    Y      L+ + +    +F ++   W+ + +++A  N+  +LIG + D
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133
Query: 123 L------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAF 160
           L               + +  E+G++ AKE G   ++E SA T + ++  F
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
           I+G  G GKS L ++F  KRF   +D  +   + +   T+D++P+ L++ DTA  ++ R+
Sbjct: 26  ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRN 84
Query: 71  ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRR 127
             R Y   A   L+VY +  R++F+  +S+LE    HA     ++  +L+GNK D+A  R
Sbjct: 85  CER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR 143
Query: 128 AVSTEEGEQFAKEHGLIFMEASA 150
            V+  EG   A   G +F E SA
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSA 166

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +I+GD   GK+CLL+  +  +F  V+  T+   + A  + +D + ++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH- 125
           +  +    Y  +   L+ + I   ++  ++   W+ +   H    + I+L+G K DL + 
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 126 -----------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                      ++ V+++EG+  A + G   + E SAKT   V E F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 19  KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78
           KS L+L+F    F+  +  TI   +  ++I+ D     LQI DT G   F ++ R     
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 79  AAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTEEGEQ 136
               +LV+ +T +++   L    +   Q   +  ++ +ML+GNKCD   +R V T E + 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 137 FAKEHGLIFMEASAKTAQNVEEAF 160
            A+E    FME SAK   NV+E F
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELF 162

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H+     +   R I +D + + L ++D   Q
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 66  ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDL 123
                  R +      A L+V+ +T R +F+ +   L   R    + ++ ++L+GNK DL
Sbjct: 83  GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           A  R VS EEG   A       +E SA    N  E F
Sbjct: 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q    N  ++L+G K DL    
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 124 -------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATIYK 169
                   HR+  VS ++G   AK+ G   ++E SA  ++N V + F + T A + K
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q    N  ++L+G K DL    
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 124 -------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATIYK 169
                   HR+  VS ++G   AK+ G   ++E SA  ++N V + F + T A + K
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q    N  ++L+G K DL    
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 124 -------AHRR-AVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAF-IKTAATIYK 169
                   HR+  VS ++G   AK+ G   ++E SA  ++N V + F + T A + K
Sbjct: 144 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66  ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDL 123
                  + +      A L+V+ +T R +F+ +   L   R    + ++ ++L+GNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           A  R VS EEG   A       +E SA    N  E F
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R I +D + + L ++D   Q
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 66  ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDL 123
                  + +      A L+V+ +T R +F+ +   L   R    + ++ ++L+GNK DL
Sbjct: 72  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 131
Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           A  R VS EEG   A       +E SA    N  E F
Sbjct: 132 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLA- 124
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 125 -----------HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP 54
           M+Y   ++ ++IG+ GVGKS L        F  VHD        +G +   R + +D + 
Sbjct: 4   MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHA 108
              I L +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ  
Sbjct: 56  ATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             ++ I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S+    K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 60
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNK 120
           TAGQE +  +    Y      L+ + +    +F ++   W+ +   H       +L+G +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQ 119
Query: 121 CDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            DL              ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S+    K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++D
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 59
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNK 120
           TAGQE +  +    Y      L+ + +    +F ++   W+ +   H       +L+G +
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQ 118
Query: 121 CDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            DL              ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S+    K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 60
Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNK 120
           TAGQE +  +    Y      L+ + +    +F ++   W+ +   H       +L+G +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQ 119
Query: 121 CDL------------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
            DL              ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 65
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 67
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP 54
           M+Y   ++ ++IG+ GVGKS L        F  VHD        +G +   R + +D + 
Sbjct: 4   MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHA 108
              I L +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ  
Sbjct: 56  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
             ++ I+L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 63
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + + ++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 70
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  +   ++LIG K D    
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 129
Query: 123 ------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
                 L+H++   +S E+G   AK+ G  I++E SA T++    +  +TA+ +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 183

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + + ++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 87
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  +   ++LIG K D    
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 146
Query: 123 ------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
                 L+H++   +S E+G   AK+ G  I++E SA T++    +  +TA+ +
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+ +L       +   +  T+   + A + T + + ++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 71
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCD---- 122
           + ++    Y  +   LL +DI+R ET +  L  W  +   +  +   ++LIG K D    
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 130
Query: 123 ------LAHRR--AVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAATI 167
                 L+H++   +S E+G   AK+ G  I++E SA T++    +  +TA+ +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 184

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP---IKL 57
           ++ ++IG+ GVGKS L        F  VHD        +G +   R + +D +    I L
Sbjct: 38  YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANMTI 114
            +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ    ++ I
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 148
Query: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           +L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F P   +    +  A  + I  +P  L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKP---IKL 57
           ++ ++IG+ GVGKS L        F  VHD        +G +   R + +D +    I L
Sbjct: 7   YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANMTI 114
            +W+  G+  +  +     +     L+VY IT R +F   + L   L  ARQ    ++ I
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 117
Query: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
           +L+GNK DL   R VS  EG   A      F+E SA    NV+E F
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +    +  T+   + A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA----------RMITI 50
           MS   ++K +++G  GVGKS L   F             GVE G           R I +
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFG------------GVEDGPEAEAAGHTYDRSIVV 49
Query: 51  DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQH 107
           D +   L ++D   Q+  R +           ++VY +T + +F   + L   L  ARQ 
Sbjct: 50  DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ- 108
Query: 108 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
              ++ I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 109 -TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 66
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDL-- 123
            +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                       ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T  +F   +  T+   + A  + I  +P  L ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLED 63
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           +  +    Y      L+ + +    +F ++   W+ +   H       +L+G + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 124 ---------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAF 160
                      ++ ++ E  E+ A++   + ++E SA T + ++  F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA----------RMITIDNKPI 55
           ++K +++G  GVGKS L   F             GVE G           R I +D +  
Sbjct: 2   VYKVLLLGAPGVGKSALARIFG------------GVEDGPEAEAAGHTYDRSIVVDGEEA 49
Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANM 112
            L ++D   Q+  R +           ++VY +T + +F   + L   L  ARQ    ++
Sbjct: 50  SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDV 107
Query: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA----------RMITIDNKPI 55
           ++K +++G  GVGKS L   F             GVE G           R I +D +  
Sbjct: 7   VYKVLLLGAPGVGKSALARIFG------------GVEDGPEAEAAGHTYDRSIVVDGEEA 54
Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLASWLEDARQHANANM 112
            L ++D   Q+  R +           ++VY +T + +F   + L   L  ARQ    ++
Sbjct: 55  SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDV 112
Query: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            I+L+GNK DL   R VS +EG   A      F+E SA    NV+  F
Sbjct: 113 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++++  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R    A  T+++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 LA 124
           L 
Sbjct: 131 LP 132

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++++  KL IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDID-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R    A  T+++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 128
Query: 123 LA 124
           L 
Sbjct: 129 LP 130

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++++  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
           S RS  R+Y+    G + V D   R+        L S L + R    A  T+++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 LA 124
           L 
Sbjct: 131 LP 132

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 8   KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMITIDNK---PIKLQIWDT 62
           K  I+G+TG GK+ LL Q   T K        T+G++     I I +K    + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKC 121
           AG+E F S    +    A  L VYD+++ +   +    WL + +  A+++  ++L+G   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 122 DLA---HRRAVSTEEGEQFAKEHGL 143
           D++    R+A  ++  ++   + G 
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGF 145

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           + + +++G    GK+ +L +F  +        TI    G  + T++++  KL IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKC 121
           +S RS  R+Y+    G + V D   R+        L S L + R    A  T+++  NK 
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQ 112
Query: 122 DLA 124
           DL 
Sbjct: 113 DLP 115

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 8   KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMITIDNK---PIKLQIWDT 62
           K  I+G+TG GK+ LL Q   T K        T+G++     I I +K    + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 63  AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKC 121
           AG+E F S    +    A  L VYD+++ +   +    WL + +  A+++  ++L+G   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 122 DLA---HRRAVSTEEGEQFAKEHGL 143
           D++    R+A  ++  ++   + G 
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGF 147

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           K II+G    GK+ +L QF+    + VH   TIG       I I+N   +  +WD  GQE
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 71
Query: 67  SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
           S RS   +YY      ++V D        +TR E +  LA   ED R+       +++  
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 124
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
           NK D+  +  ++  E  QF K
Sbjct: 125 NKQDV--KECMTVAEISQFLK 143

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           K II+G    GK+ +L QF+    + VH   TIG       I I+N   +  +WD  GQE
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 71
Query: 67  SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
           S RS   +YY      ++V D        +TR E +  LA   ED R+       +++  
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 124
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
           NK D+  +  ++  E  QF K
Sbjct: 125 NKQDV--KECMTVAEISQFLK 143

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 18  GKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR 77
           GK+ +L +F  +        TI    G  + T++++  KL IWD  GQ+S RS  R+Y+ 
Sbjct: 30  GKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 78  GAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCDLA 124
              G + V D   R+        L S L + R    A  T+++  NK DL 
Sbjct: 85  STDGLIWVVDSADRQRXQDCQRELQSLLVEERL---AGATLLIFANKQDLP 132

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           K II+G    GK+ +L QF+    + VH   TIG       I I+N   +  +WD  GQE
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 76
Query: 67  SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
           S RS   +YY      ++V D        +TR E +  LA   ED R+       +++  
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 129
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
           NK D+  +  ++  E  QF K
Sbjct: 130 NKQDV--KECMTVAEISQFLK 148

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 24/141 (17%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           K II+G    GK+ +L QF+    + VH   TIG       I I+N   +  +WD  GQE
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMN--EVVHTSPTIGS--NVEEIVINNT--RFLMWDIGGQE 77
Query: 67  SFRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIG 118
           S RS   +YY      ++V D        +TR E +  LA   ED R+       +++  
Sbjct: 78  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFA 130
Query: 119 NKCDLAHRRAVSTEEGEQFAK 139
           NK D+  +  ++  E  QF K
Sbjct: 131 NKQDV--KECMTVAEISQFLK 149

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 35  HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R +T  N  IK  IWD  GQ  FRS+   Y RG    + + D   RE  
Sbjct: 49  EDMIPTVGFNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 95  ----NHLASWLEDARQHANANMTIMLIGNKCDLAH 125
               N L + L+  +      + ++++GNK DL +
Sbjct: 107 EASRNELHNLLDKPQLQG---IPVLVLGNKRDLPN 138

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           + +I+G  G GK+ +L      R Q    +T     G  + T+  K +KL +WD  GQ 
Sbjct: 19 LRILILGLDGAGKTTILY-----RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRE 92
          S R   R YY   A  + V D T ++
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKD 99

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K II+G    GK+ +L QF     + VH        G+ +  I  K     +WD  GQES
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMN--EVVHT---SPTIGSNVEEIVVKNTHFLMWDIGGQES 72
Query: 68  FRSITRSYYRGAAGALLVYD--------ITRRETFNHLASWLEDARQHANANMTIMLIGN 119
            RS   +YY      +LV D        IT+ E +  LA   ED R+ A     +++  N
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-----VLIFAN 125
Query: 120 KCDL 123
           K D+
Sbjct: 126 KQDM 129

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 35  HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R IT  N  IKL  WD  GQ  FRS+   Y RG +  + + D   +E  
Sbjct: 49  EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106
Query: 95  ----NHLASWLEDARQHANANMTIMLIGNKCDLA 124
               N L + L+  +      + ++++GNK DL 
Sbjct: 107 EASKNELHNLLDKPQLQG---IPVLVLGNKRDLP 137

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 35  HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
            D+   V F  R IT  N  IKL  WD  GQ  FRS+   Y RG +  + + D   +E  
Sbjct: 58  EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
Query: 95  ----NHLASWLEDARQHANANMTIMLIGNKCDLA 124
               N L + L+  +      + ++++GNK DL 
Sbjct: 116 EASKNELHNLLDKPQLQG---IPVLVLGNKRDLP 146

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 377
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 435
Query: 124 A 124
Sbjct: 436 P 436

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNICFTVWDVGGQD 84
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
             R + R Y++   G + V D   RE     A  L+   Q       ++L+  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 126 RRAVSTEEGEQFAKEH 141
              VS E  ++   +H
Sbjct: 145 AMPVS-ELTDKLGLQH 159

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 67
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 125
Query: 124 A 124
Sbjct: 126 P 126

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126
Query: 124 A 124
Sbjct: 127 P 127

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113
Query: 124 A 124
Sbjct: 114 P 114

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 113
Query: 124 A 124
Sbjct: 114 P 114

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           + +++G  G GK+ +L      + +    +T     G  + T+  K I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           + +++G  G GK+ +L      + +    +T     G  + T+  K I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 7  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           + +++G  G GK+ +L +    +   V  +T     G  + T+  K I   +WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKL---KLGEV--ITTIPTIGFNVETVQYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
            RS+ R YYR   G + V D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           + + +G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  GQ+ 
Sbjct: 2   RILXLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGQDK 56
Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDLA 124
            R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL 
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDA--IILIFANKQDLP 114

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L      R Q    +T     G  + T+  K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQT 57
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI-GNKCDLAH 125
           S R   R YY      + V D   R+      S L    +       I+++  NK D+  
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 43  FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE 102
            G  + T++ K I   +WD  GQ+  R + + Y++   G + V D   RE    +A  L+
Sbjct: 49  IGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQ 108
Query: 103 -----DARQHANANMTIMLIGNKCDLAHRRAVS 130
                D  + A     ++L  NK DL +  A+S
Sbjct: 109 KMLLVDELRDA----VLLLFANKQDLPNAMAIS 137

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ K I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 220
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
             R + R Y++   G + V D   RE  N     L     ED  + A     +++  NK 
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 276
Query: 122 DLAH 125
           DL +
Sbjct: 277 DLPN 280

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ K I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 71
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
             R + R Y++   G + V D   RE  N     L     ED  + A     +++  NK 
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 127
Query: 122 DLAH 125
           DL +
Sbjct: 128 DLPN 131

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
             R + R Y++   G + V D   RE  N     L     ED  + A     +++  NK 
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 111
Query: 122 DLAH 125
           DL +
Sbjct: 112 DLPN 115

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +           +T     G  + T++ K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----EDARQHANANMTIMLIGNKC 121
             R + R Y++   G + V D   RE  N     L     ED  + A     +++  NK 
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA----VLLVFANKQ 128
Query: 122 DLAH 125
           DL +
Sbjct: 129 DLPN 132

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGLD 58
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 116
Query: 124 A 124
Sbjct: 117 P 117

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGLD 68
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 126
Query: 124 A 124
Sbjct: 127 P 127

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +   K  Q V  +   V F    +T  N  +K  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKL--KLGQSVTTIPT-VGFNVETVTYKN--VKFNVWDVGGLD 57
Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIGNKCDL 123
             R + R YY G  G + V D   R+  +     L    + R+  +A   I++  NK DL
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA--IILIFANKQDL 115
Query: 124 A 124
Sbjct: 116 P 116

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 44  GARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED 103
           G  + T++ + I   +WD  GQ+  R + R YY    G + V D   RE        ++D
Sbjct: 50  GFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDD 102
Query: 104 ARQHAN--------ANMTIMLIGNKCDLAH 125
           AR+  +         +  I++  NK DL +
Sbjct: 103 AREELHRMINEEELKDAIILVFANKQDLPN 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-123
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-122
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-121
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-121
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-119
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-119
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-118
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-117
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-116
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-116
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-115
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-114
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-113
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-113
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-113
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-113
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-113
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-112
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-112
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-111
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-111
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-111
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-111
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-110
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-110
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-110
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-109
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-109
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-109
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-108
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-107
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-107
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-107
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-107
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-106
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-105
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-104
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-102
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-101
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-100
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-91
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-90
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-88
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	8e-87
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-85
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-85
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-85
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-84
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-84
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-81
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-80
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-79
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-79
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-78
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-77
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-77
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-76
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-75
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-74
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-73
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-62
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-61
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-50
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-48
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-46
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-45
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-44
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	9e-44
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-42
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-40
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-40
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-39
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-39
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-38
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-38
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-21
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-15
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-15
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-15
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	5e-15
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-13
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-11
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	4e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	4e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	8e-04

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  344 bits (885), Expect = e-123
 Identities = 147/175 (84%), Positives = 155/175 (88%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
             +YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID K IKLQIWD
Sbjct: 17  RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+++NM IMLIGNK 
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
           DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ G+F
Sbjct: 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  343 bits (882), Expect = e-122
 Identities = 101/179 (56%), Positives = 132/179 (73%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
           DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G  D   
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPER 184

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  341 bits (878), Expect = e-121
 Identities = 101/180 (56%), Positives = 130/180 (72%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           +   +LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R++ +  K +KLQIW
Sbjct: 20  IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LA+WL DAR  A+ N+ ++L GNK
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 139

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF+K A TI  KI  G  D   
Sbjct: 140 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPER 199

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  340 bits (875), Expect = e-121
 Identities = 93/214 (43%), Positives = 129/214 (60%), Gaps = 6/214 (2%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y  LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + I+ K IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R++A+ N+ + LIGNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182
           LAH RAV TEE + FA+E+ L+F E SA  ++NV++AF +   TIY+K+     D+ + S
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189

Query: 183 YGIKVGYGGIPGP------SGGRDGSSSQAGGCC 210
                     P            +   +    CC
Sbjct: 190 ANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  334 bits (859), Expect = e-119
 Identities = 90/185 (48%), Positives = 126/185 (68%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKC
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           DL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++  G      E
Sbjct: 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAE 191

Query: 182 SYGIK 186
              +K
Sbjct: 192 KSNVK 196

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  335 bits (860), Expect = e-119
 Identities = 84/209 (40%), Positives = 130/209 (62%), Gaps = 7/209 (3%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y YLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + + +D K +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A + +  +L+GNKC
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           DL  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I + +     + + +
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 183

Query: 182 SYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
                       G    +  S +  GGCC
Sbjct: 184 K-------KEDKGNVNLKGQSLTNTGGCC 205

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  333 bits (855), Expect = e-118
 Identities = 110/168 (65%), Positives = 136/168 (80%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK 
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  329 bits (846), Expect = e-117
 Identities = 91/180 (50%), Positives = 116/180 (64%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182
           L H RAV T+E   FA+++ L F+E SA  + NVEEAF      IY+ +           
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  329 bits (846), Expect = e-116
 Identities = 76/187 (40%), Positives = 112/187 (59%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            + Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + I  ++K IKLQIWD
Sbjct: 4   MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAG E +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKC
Sbjct: 64  TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 123

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           D+   R VS+E G Q A   G  F EASAK   NV++ F +    I +K+ + +      
Sbjct: 124 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPA 183

Query: 182 SYGIKVG 188
             G K G
Sbjct: 184 VTGAKQG 190

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  328 bits (842), Expect = e-116
 Identities = 78/171 (45%), Positives = 111/171 (64%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y ++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R + +    +K QIWD
Sbjct: 21  DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA A + +ML+GNK 
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 140

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           DL+  R V TEE   FA+ +GL+F+E SA  + NVE AF      I+ K+ 
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  327 bits (841), Expect = e-116
 Identities = 90/167 (53%), Positives = 114/167 (68%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAG E +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK 
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           DL H RAV T+E   FA+++GL F+E SA  + NVE AF      IY
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  326 bits (839), Expect = e-115
 Identities = 79/181 (43%), Positives = 115/181 (63%), Gaps = 1/181 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y +LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + + I+ + +KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +L+GNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           DLA RR VS +  E+F++   + ++E SAK + NVE+ F+  A  +  + +      +N 
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLV-NNV 200

Query: 182 S 182
           S
Sbjct: 201 S 201

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  322 bits (828), Expect = e-114
 Identities = 79/176 (44%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y +LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I  K +KLQIWD
Sbjct: 25  QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 84

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A +N+  +LIGNK 
Sbjct: 85  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144

Query: 122 DLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
           DL+  R VS  E +  A+ +  L  +E SAK + NVEEAF++ A  +  +    +F
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLF 200

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  320 bits (823), Expect = e-113
 Identities = 72/172 (41%), Positives = 109/172 (63%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKC
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           D+   R V TE+G+  A++ G  F EASAK   +V +AF +    I  K+ D
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  319 bits (820), Expect = e-113
 Identities = 85/172 (49%), Positives = 121/172 (70%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKC
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           D+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I  K+  
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  319 bits (819), Expect = e-113
 Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 1/174 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y +LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R + I+ + +KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +L+GNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV 175
           D   R+ V TE+  +FA + G+   E SAK   NVEE F      + +  +D +
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 177

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  318 bits (818), Expect = e-113
 Identities = 76/173 (43%), Positives = 117/173 (67%), Gaps = 1/173 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIW 60
            Y   FK +++GD+GVGK+CLL++F D  F     + T+G++F  +++ +D   +KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++ +ML+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
            D AH R V  E+GE+ AKE+GL FME SAKT  NV+ AF   A  + ++   
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  320 bits (821), Expect = e-113
 Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 1/195 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           SY  + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQ+WD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W +   +HAN    ++L+GNK 
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           D+   R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI          
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194

Query: 182 SYGIKVGYGGIPGPS 196
                +      G S
Sbjct: 195 GKEGNISINSGSGNS 209

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  319 bits (819), Expect = e-112
 Identities = 87/170 (51%), Positives = 122/170 (71%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKC
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           DL  ++ V     ++FA   G+ F+E SAK A NVE++F+  AA I K++
Sbjct: 149 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  316 bits (813), Expect = e-112
 Identities = 70/172 (40%), Positives = 106/172 (61%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
              Y+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + +   +K IKLQIWD
Sbjct: 18  GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWD 77

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++L+GNKC
Sbjct: 78  TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKC 137

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           DL   R V  E+G + A + G  F EASAK   NV++ F +    I +K+ +
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  316 bits (811), Expect = e-111
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 4/188 (2%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
                 K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + I++D    KL IWD
Sbjct: 11  DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNK 120
           TAGQE FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N +  ML+GNK
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 130

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            D    R V   EG +FA++H ++F+EASAKT   V+ AF +    I +    G+++  N
Sbjct: 131 IDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP--GLWESEN 187

Query: 181 ESYGIKVG 188
           ++ G   G
Sbjct: 188 QNSGPSSG 195

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  315 bits (810), Expect = e-111
 Identities = 75/171 (43%), Positives = 111/171 (64%), Gaps = 1/171 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
              +  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + + +  K I+LQIWD
Sbjct: 22  PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W++   ++A+ +  ++L+GNK 
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 141

Query: 122 DLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           D    R ++ ++GE+FA++  G+ F EASAK   NV+E F+K    I KK+
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  314 bits (806), Expect = e-111
 Identities = 66/169 (39%), Positives = 106/169 (62%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           + +   K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWD
Sbjct: 8   NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 67

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE + S+   YYRGAA A++V+D+T + +F     W+++ +   N NM + L GNK 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL   R V+ E+ + +A+E+GL FME SAKTA NV+E F + A  + + 
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  314 bits (807), Expect = e-111
 Identities = 65/185 (35%), Positives = 107/185 (57%), Gaps = 11/185 (5%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID---------- 51
            Y YL K++ +GD+GVGK+ +L Q+TD +F      T+G++F  + +             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66

Query: 52  NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NA 110
            + I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++ +W+   + HA + 
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126

Query: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           N  I+L GNK DL  +RAV  EE  + A+++G+ + E SA    N+  A       I K+
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186

Query: 171 IQDGV 175
           ++  V
Sbjct: 187 MERSV 191

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  312 bits (802), Expect = e-110
 Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
            + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QE FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++L+GNK D+ 
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM- 120

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
             R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI  
Sbjct: 121 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  313 bits (805), Expect = e-110
 Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 11/185 (5%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP------- 54
            Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +  + +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80

Query: 55  ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA- 110
              + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A   
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140

Query: 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           N  I+LIGNK DL  +R V+  +  + A ++G+ + E SA T QNVE+A       I K+
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200

Query: 171 IQDGV 175
           ++  V
Sbjct: 201 MEQCV 205

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  311 bits (799), Expect = e-110
 Identities = 60/168 (35%), Positives = 98/168 (58%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S AY FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I  K + L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + ++GNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DL   R VS +E E +A+  G      SAK  + +EE F+     + +
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  310 bits (796), Expect = e-109
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 9/191 (4%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITIDNKPIKLQ 58
           ++     K  ++G+  VGKS L+  FT K  +F   + +T GVE     +TI +  + ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 59  IW--DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---HANANMT 113
           ++  DTAG + ++     Y+ G   A+LV+D++  E+F    +W E  +         + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 114 IMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAK-TAQNVEEAFIKTAATIYKKI 171
            +L+ NK DL   R  V  +  + +A  + L F + SA    ++ +  F+  A T Y+  
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194

Query: 172 QDGVFDVSNES 182
           +D V    +  
Sbjct: 195 EDKVAAFQDAC 205

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  308 bits (792), Expect = e-109
 Identities = 69/168 (41%), Positives = 109/168 (64%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +    FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DLA++RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  309 bits (794), Expect = e-109
 Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
            S    +K ++ GD  VGKS  L++     F+     T+GV+F  + + +D +   LQ+W
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  W++     A+  + IML+GNK
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 142

Query: 121 CDLAH------RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            D+        ++ V    GE+ A  +G +F E SAK   N+ EA +  A  + K+
Sbjct: 143 ADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  307 bits (790), Expect = e-108
 Identities = 71/173 (41%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S + +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R + ID + IK+Q+WD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75

Query: 62  TAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGN 119
           TAGQE FR S+ + YYR     + VYD+T   +F+ L +W+E+ +QH  AN +  +L+GN
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135

Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA---QNVEEAFIKTAATIYK 169
           KCDL     V T+  ++FA  H +   E SAK      +VE  F+  A  +  
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  305 bits (784), Expect = e-108
 Identities = 68/168 (40%), Positives = 99/168 (58%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S     K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + +   N+  K  IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAG E FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH   ++ + + GNKC
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DL   R V   + + +A     IF+E SAK A N+ E FI+ +  I  
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  304 bits (780), Expect = e-107
 Identities = 67/168 (39%), Positives = 110/168 (65%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +    FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R    +++ IML+GNK 
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           DL+ +R VSTEEGE+ AKE  ++F+E SAK   NV++ F + AA +  
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  303 bits (779), Expect = e-107
 Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP-IKLQIW 60
           S+    K +++GD   GK+ L   F  + F   +  TIG++F  R IT+     + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ---HANANMTIMLI 117
           D  GQ     +   Y  GA G LLVYDIT  ++F +L  W    ++    +     + L+
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           GNK DL H R +  E+  +F +E+G      SAKT  +V   F K AA I     
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  304 bits (781), Expect = e-107
 Identities = 71/209 (33%), Positives = 113/209 (54%), Gaps = 10/209 (4%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +    FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAG E FRS+  SY R +  A++VYDIT   +F     W++D R    +++ IML+GNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           DLA +R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +             +
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD-RSRED 190

Query: 182 SYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
              IK+                   GGC 
Sbjct: 191 MIDIKLEKP---------QEQPVSEGGCL 210

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  304 bits (780), Expect = e-107
 Identities = 65/169 (38%), Positives = 99/169 (58%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           S     K  ++GDTGVGKS ++ +F    F      TIG  F  + +   N+  K  IWD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F S+   YYRG+A A++VYDIT++++F  L  W+++ ++H   N+ + + GNKC
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL+  R V  ++ +++A+  G I +E SAK A N+EE F   +  I   
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  302 bits (777), Expect = e-106
 Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 1/168 (0%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
                K +++G+  VGKS ++ ++    F   +  TIGV+F  R I ++++ ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE F +IT++YYRGA   +LV+  T RE+F  ++SW E        ++   L+ NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           L     +  EE E  AK   L F   S K   NV E F   A    +K
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  299 bits (768), Expect = e-105
 Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 6/175 (3%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
             + LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +D   + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLI 117
           TAGQE FRS+   +YRG+   LL + +   ++F +L++W ++   +A+     +   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKI 171
           GNK D++  R VSTEE + + +++G   + E SAK A NV  AF +    +    
Sbjct: 123 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  297 bits (762), Expect = e-104
 Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 16/216 (7%)

Query: 1   MS--YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQ 58
           M+     L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + + +D++ + +Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 59  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTI 114
           IWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+     N   
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174
           +++GNK DL +R+  +         ++ + + E SAK A NVE+AF   A    K+  + 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 175 VFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
               +     IK+            + + + A  C 
Sbjct: 181 ELY-NEFPEPIKL---------DKNERAKASAESCS 206

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  293 bits (753), Expect = e-102
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 1/172 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE-FGARMITIDNKPIKLQIW 60
                +K  +IGD GVGK+  + +  D RF+  ++ T+G        +      IK  +W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQE    +   YY GA+GA+L +D+T R T  +LA W+++ +        I++  NK
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
            D+ +R+ +S +   +  K     + E SAKTA N    F+  A     +  
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  291 bits (747), Expect = e-101
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 40/210 (19%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIK---- 56
           M     +K +++G++ VGKS ++L+ T   F    + TIG  F   ++ +++  IK    
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 57  ---------------------------------LQIWDTAGQESFRSITRSYYRGAAGAL 83
                                              IWDTAGQE + SI   YYRGA  A+
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 84  LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL 143
           +V+DI+   T +   +W+   +   ++N  I+L+ NK D      V   E +++A+++ L
Sbjct: 122 VVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNL 178

Query: 144 IFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           +F++ SAKT  N++  F   A  IYK I +
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  287 bits (736), Expect = e-100
 Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 9/181 (4%)

Query: 1   MS--YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKL 57
           MS     + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + +T+D +K   +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMT 113
           Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 114 IMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKI 171
            +++GNK D    ++ VS +  ++ AK  G I     SAK A NV+ AF + A +  ++ 
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

Query: 172 Q 172
           Q
Sbjct: 181 Q 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  276 bits (709), Expect = 1e-95
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
                FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WD
Sbjct: 11  EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 70

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKV 129

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           D+  R+     +   F ++  L + + SAK+  N E+ F+  A  +     
Sbjct: 130 DIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  262 bits (673), Expect = 7e-91
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK +++G++GVGKS L   F   +    H++    +   R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 66  ESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIMLIGNKCDL 123
                  +    +     L+V+ +T R +F+ +   L        + ++ ++L+GNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           A  R VS EEG   A       +E SA    N  E F      I  +
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  262 bits (671), Expect = 3e-90
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 2/173 (1%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
               +FK +++G++GVGKS L   F   +    H+     +   R I +D + + L ++D
Sbjct: 19  QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78

Query: 62  TAGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGN 119
              Q       R    +     L+V+ +T R +F+ +   L        + ++ ++L+GN
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138

Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           K DLA  R VS EEG   A       +E SA    N  E F      I  +  
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRG 191

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  257 bits (660), Expect = 1e-88
 Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
             +   K +++G  GVGKS L +QF    F   +D TI   +  ++ ++D  P +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNK 120
           TAGQE F ++   Y R   G LLV+ I  R++FN +        R     +  ++L+GNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            DL  +R V   E   F   H + + EASAK   NV+EAF +    + K 
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  252 bits (646), Expect = 8e-87
 Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  + + +D + +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            +R VS EE +  A +  + ++E SAKT  NV++ F      I  +
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  252 bits (645), Expect = 3e-86
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 2/173 (1%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +   L K I++G  GVGKS L LQF    F   ++ T    +  + + +D + +++ I D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 72

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNK 120
           TAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
            DL  +R VS EE +  A++  + ++E SAKT  NV++ F      I  +  +
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  249 bits (639), Expect = 3e-85
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M      K +I+G   VGK+ L  QF +  F   +D T+   + ++++T+      L + 
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLV 77

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGN 119
           DTAGQ+ +  +  S+  G  G +LVY +T   +F  + S  +     H    + ++L+GN
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137

Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           K DL+  R V   EG++ A+  G  FME+SA+  Q  +  F K    I + 
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  249 bits (639), Expect = 4e-85
 Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 16/210 (7%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +   L K I++G  GVGKS L LQF    F   ++ T    +  + + +D + +++ I D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILD 68

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNK 120
           TAGQE + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180
            DL  +R VS EE +  A++  + ++E SAKT  NV++ F      I  +  +   + + 
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKN- 187

Query: 181 ESYGIKVGYGGIPGPSGGRDGSSSQAGGCC 210
                        G    +  +      CC
Sbjct: 188 -------------GKKKRKSLAKRIRERCC 204

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  247 bits (634), Expect = 9e-85
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 2/171 (1%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M  +   K  I+G   VGKS L +QF + +F   +D TI   F  ++IT++ +   LQ+ 
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLV 59

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGN 119
           DTAGQ+ +    ++Y     G +LVY +T  ++F  +               + IML+GN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           K DL   R +S EEG+  A+     F+E+SAK  Q   + F +      K 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  246 bits (629), Expect = 3e-84
 Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++G+  VGKS ++L+F    F    + TIG  F  + +TI+   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH- 125
            F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I L+GNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 126 --RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
              R V+ EEGE+ A+E GL+F E SAKT +NV + F+     I  K
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  245 bits (629), Expect = 5e-84
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 4/171 (2%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L++ +++GD GVGK+ L   F  K+ + +H+  +G +   R +T+D +   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 66  ESFRSIT--RSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCD 122
           E         S  +G +  ++VY I  R +F   +       R H   ++ I+L+GNK D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           LA  R VS EEG   A      F+E SA    NV E F      +  + +D
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  238 bits (611), Expect = 4e-81
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 3/171 (1%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
                +K +++GD GVGKS L +QF  K F   +D TI   +  +   IDN+   L + D
Sbjct: 14  ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLD 72

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNK 120
           TAGQE F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++L+ NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 170
            DL H R V+ ++G++ A ++ + ++E SAK    NV++ F      I ++
Sbjct: 133 VDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  237 bits (608), Expect = 1e-80
 Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 4/172 (2%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           M+ +   K  I G  GVGKS L+++F  KRF   +D T+   +     TID++ + ++I 
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEIL 81

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGN 119
           DTAGQE        + R   G +LVYDIT R +F  +              N+T++L+GN
Sbjct: 82  DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140

Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 170
           K DL H R VSTEEGE+ A E    F E SA T + N+ E F +    + ++
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  233 bits (596), Expect = 4e-79
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           ++K +++G  GVGKS L   F      P      G  +  R I +D +   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           +  R +           ++VY +T + +F   +       R     ++ I+L+GNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             R VS +EG   A      F+E SA    NV+  F      I  +
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  231 bits (593), Expect = 9e-79
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R VS+ EG   A+E G  FME SAK+   V+E F +    +  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  231 bits (592), Expect = 1e-78
 Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F    D TI   +  + + ID +   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNK DLA 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R V + + +  A+ +G+ ++E SAKT Q VE+AF      I +
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  229 bits (586), Expect = 1e-77
 Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 126 RRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R V  E+G+  A++     F+E+SAK+  NV E F      I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  227 bits (582), Expect = 6e-77
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++I+ D     LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IML+GNKCD +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             R V + E E  A+     FME SAK   NV+E F +      ++
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  227 bits (582), Expect = 2e-76
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 7/174 (4%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKP---IKL 57
           S    ++ ++IG+ GVGKS L   F         D   +G +   R + +D +    I L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIML 116
            +W+  G+  +  +     +     L+VY IT R +F   +       R     ++ I+L
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150

Query: 117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           +GNK DL   R VS  EG   A      F+E SA    NV+E F      +  +
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  226 bits (579), Expect = 2e-76
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 6/170 (3%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
                 I+G  G GKS L ++F  KRF   +D  +   +     T+D++P+ L++ DTA 
Sbjct: 20  LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTAD 78

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKC 121
            ++ R+  R Y   A   L+VY +  R++F+  +S+LE    HA     ++  +L+GNK 
Sbjct: 79  LDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKT-AQNVEEAFIKTAATIYKK 170
           D+A  R V+  EG   A   G +F E SA    ++V+  F +      ++
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  225 bits (575), Expect = 1e-75
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 20/212 (9%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
             +  ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++I+ D     LQI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ--HANANMTIMLIGN 119
           T G   F ++ R         +LV+ +T +++   L    +   Q   +  ++ +ML+GN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVS 179
           KCD   +R V T E +  A+E    FME SAK   NV+E F +      ++         
Sbjct: 123 KCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS------ 175

Query: 180 NESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 211
                       I G   G+   + +  G C+
Sbjct: 176 ----------LNIDGKRSGKQKRTDRVKGKCT 197

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  222 bits (569), Expect = 1e-74
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E   R   + ++ ++L+GNKCDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            R V T++ +  A+ +G+ F+E SAKT Q V++AF      I K 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  221 bits (565), Expect = 4e-74
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            R V T++  + AK +G+ F+E SAKT Q VE+AF      I + 
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  220 bits (562), Expect = 7e-74
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 16/182 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITIDNK---PIKLQIWD 61
            K +I+G+TG GK+ LL Q    +   +     T+G++     I I +K    + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNK 120
            AG+E F S    +    A  L VYD+++ +   + +  WL + +  A+ +  ++L+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121

Query: 121 CDLAHRR---AVSTEEGEQFAKEHGL-----IFMEASAKTAQNVEEAFIKTAATIYK-KI 171
            D++  +   A  ++  ++   + G           + + +  + +            KI
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181

Query: 172 QD 173
           +D
Sbjct: 182 RD 183

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  219 bits (560), Expect = 2e-73
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 7/170 (4%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKP---IKLQIWD 61
            ++ ++IG+ GVGKS L   F         D   +G +   R + +D +    I L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNK 120
             G+  +  +     +     L+VY IT R +F   +       R     ++ I+L+GNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            DL   R VS  EG   A      F+E SA    NV+E F      +  +
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  197 bits (504), Expect = 6e-65
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  I+G+   GKS L+ ++    +        G  F  + I +D +   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDL-- 123
             +     +       + V+ +    +F  + ++        NA  + ++L+G +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 124 AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKK 170
           A+ R +      + + +     + E  A    NVE  F   A  +   
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  201 bits (512), Expect = 3e-62
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--------DN 52
           + +    K  +IGD   GK+ LL Q   + F P    T G+    +            + 
Sbjct: 36  LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95

Query: 53  KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
           K      WD  GQE   +  + +   ++  +L+ D     T ++   WL    ++     
Sbjct: 96  KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG-KS 151

Query: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            ++++ NK D      +  ++  +        F   S K    VE       + +   
Sbjct: 152 PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  188 bits (481), Expect = 1e-61
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 13/171 (7%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
             +  ++GD   GKS L+ +F    +Q   + T   ++  + + +D +   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE---DARQHANANMTIMLIG--NK 120
              +     +   A   + V+ +    +F  ++         R      + + L+G  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 121 CDLAHRRAVSTEEGEQF-AKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
              +  R V         A      + E  A    NV+  F + A  +   
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  160 bits (408), Expect = 2e-50
 Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +     K +++GD  VGK+CLLL F+       +  T+   F   ++   N+   L +WD
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWD 77

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNK 120
           TAGQE +  +    Y  +   LL + +  R +F+++++ W  + + +       +L+G K
Sbjct: 78  TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLK 136

Query: 121 CDLAH--RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            DL       V+ +EG+   ++ G + ++EAS+     + E F
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  155 bits (393), Expect = 3e-48
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MS +   K + +GD  VGK+CLL+ +T   F   +  T+   F A  + ++   + L +W
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + +A   + I+L+G 
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120

Query: 120 KCDL----------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           K DL               ++T +GE+  K  G   ++E S+K+ +NV+  F
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  150 bits (382), Expect = 4e-46
 Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 12/170 (7%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
           MS +   K + +GD  VGK+C+L+ +T  +F   +  T+   F A  + +D + + L +W
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLW 62

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGN 119
           DTAGQE +  +    YRGA   +L + +  + ++ ++   W+ + R+ A  N+ I+L+G 
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121

Query: 120 KCDL--------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           K DL         H   +++ +GE+  K+ G   ++E S+KT QNV+  F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  149 bits (378), Expect = 1e-45
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD G GK+ LL+ F D  F   +  T+   +    + +  KP+ L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH 125
            +  +   +Y  A+  LL +D+T   +F+++ + W  +        + I+++G K DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRK 152

Query: 126 RRA------------VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
            ++            V+   G++ A+  G + ++E SA+   NV   F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  146 bits (369), Expect = 3e-44
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD   GK+CLL+ F+   F  V+  T+   + A  I +D K ++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH- 125
           +  +    Y      L+ + +   ++  ++   W+ + +     N+ I+L+ NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144

Query: 126 -----------RRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                      +  V T++G   A       ++E SAKT + V E F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  144 bits (365), Expect = 9e-44
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%)

Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           A   K +I+GD   GK+CLL+ F+  +F  V+  T+  E     I +D K ++L +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCD 122
           GQE +  +    Y      L+ + I   ++  ++   W  + +     N+ I+L+GNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 140

Query: 123 L------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           L              +  V +EEG   A       ++E SAKT + V E F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  140 bits (354), Expect = 4e-42
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+  +  +  + +D KP+ L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL--- 123
            +  +    Y      L+ + +    +F ++ +      +H   N  I+L+G K DL   
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149

Query: 124 ---------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF---IKTA 164
                         ++  +G   AKE G + ++E SA T + ++  F   I+  
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  137 bits (347), Expect = 2e-41
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD  VGK+CLL+ +T   F P   +    +  +  + +D KP+ L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
           +  +    Y     +L+ + +    +F ++ +      +H   N  I+L+G K DL    
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 124 --------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
                        ++  +G   AKE G + ++E SA T + ++  F
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  135 bits (343), Expect = 1e-40
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL--- 123
           + ++    Y  +   L+ +DI+R ET + +   W  + ++    N  ++L+G K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 124 ---------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQN-VEEAF 160
                      +  VS ++G   AK+ G   ++E SA  ++N V + F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  134 bits (340), Expect = 5e-40
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +     K +++GD+  GK+ LL  F    F   +  T+   + A    ID + I+L +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWD 82

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNK 120
           T+G   + ++    Y  +   L+ +DI+R ET + +   W  + ++    N  ++L+G K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCK 141

Query: 121 CDL------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQN-VEEAF---IKT 163
            DL              +  VS ++G   AK+ G   ++E SA  ++N V + F      
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201

Query: 164 A 164
            
Sbjct: 202 C 202

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  134 bits (338), Expect = 1e-39
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
                 K +++GD   GK+ +L       +   +  T+   + A +   + + ++L +WD
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL-ETEEQRVELSLWD 81

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNK 120
           T+G   + ++    Y  +   LL +DI+R ET  + L  W  +   +   +  ++LIG K
Sbjct: 82  TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCK 140

Query: 121 CDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKTAQ-NVEEAF 160
            DL    +            +S E+G   AK+ G   ++E SA T++ ++   F
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  133 bits (337), Expect = 1e-39
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
            +     K +++GD  VGK+ L++ +T   +   +  T   +  + ++++D +P++LQ+ 
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLC 73

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGN 119
           DTAGQ+ F  +    Y      LL + +    +F +++  W+ + R H      I+L+G 
Sbjct: 74  DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGT 132

Query: 120 KCDLAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           + DL                 V  E  +  A+E     ++E SA T +N++E F
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  131 bits (330), Expect = 1e-38
 Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           A + K +++GD  VGK+CLL+ + +  F   +  T+  +  A  +T+  K   L ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCD 122
           GQE +  +    Y      L+ + +    +F ++   W+ + +++A  N+  +LIG + D
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQID 133

Query: 123 LAHRRA------------VSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
           L                 +  E+G++ AKE G   ++E SA T + ++  F
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  132 bits (333), Expect = 2e-38
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 66/222 (29%)

Query: 13  GDTGVGKSCLLLQF---TDKRFQPVHDLTIG-VEFGARMI--------------TIDNKP 54
           G  G+GKSCL  +F   +   F   H   +   +FG R++                D   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 55  IKLQIW-------DTAGQESFRSITRSYYRGAA--------------------------- 80
            K+ I        D   Q    +  + Y + AA                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 81  ----------GALLVYDITR--RETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRR 127
                     G LL  D++R     F+    ++ +           I+++  KCD    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            +        +K+  L  +E SA++  NV+ AF      I K
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLIDK 255

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  102 bits (255), Expect = 3e-26
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 19/177 (10%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
            L K +++GD  VGK+CLL+ +T   F P   +    +  +  + +D KP+ L +WDTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDL 123
            E +  +    Y      L+ + +    +F+H+ + W  + R H   N  I+L+G K DL
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDL 271

Query: 124 ------------AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAF---IKTA 164
                            ++  +G   AKE G + ++E SA T + ++  F   I+  
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 19/185 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKR----------FQPVHDLTIGVEFGARMI-TIDNKPI 55
           FK +  G    GK+  L     K                + T+  +F    I  +     
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI- 114
           +  ++   GQ  + +  +   RG  G + V D        +  S        A   +T+ 
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 115 ---MLIG-NKCDLAHRRAVSTEEGEQFAKEHGLIFM-EASAKTAQNVEEAFIKTAATIYK 169
              ++I  NK DL    A+  E         G   + EA A   + V E   + +  +  
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 170 KIQDG 174
           ++  G
Sbjct: 193 RVAGG 197

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTAGQE 66
           + +G    GK+ ++ +      Q  + L TIG  +E         +  +   ++D +GQ 
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMSGQG 78

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---ANANMTIMLIGNKCDL 123
            +R++   YY+     + V D + R         L+    H    +  + I+   NK DL
Sbjct: 79  RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138

Query: 124 AHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 160
               AV++ +  +       K+       + A   + ++E  
Sbjct: 139 RD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP-IKLQIWDTAGQE 66
           + +++G    GKS +      K   P   L +          I N   +  QIWD  GQ 
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80

Query: 67  SFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKC 121
            F   T      +RG    + V D      E    L   +  A +  N +M   +  +K 
Sbjct: 81  DFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKV 139

Query: 122 DL 123
           D 
Sbjct: 140 DG 141

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 19/175 (10%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTA 63
            K II+G    GK+ +L QF     + VH   TIG  VE       I     +  +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQF--SMNEVVHTSPTIGSNVE------EIVINNTRFLMWDIG 68

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 122
           GQES RS   +YY      ++V D T RE  +     L     H +     +++  NK D
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 123 LAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           +     ++  E  +       K+H        A T + + +      + +  +++
Sbjct: 129 VKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 69.1 bits (170), Expect = 4e-15
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 33/167 (19%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTAGQE 66
           +I+G  G GK+ +L +      + V  + TIG  VE      T+  K +K Q+WD  G  
Sbjct: 11  LILGLDGAGKTTILYRLQVG--EVVTTIPTIGFNVE------TVTYKNLKFQVWDLGGLT 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ--------HANANMTIMLIG 118
           S R   R YY      + V D   R+        +  ++                +++  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVFA 115

Query: 119 NKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 160
           NK D+    A+++ E          K+      + SA     ++EA 
Sbjct: 116 NKQDMEQ--AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTAGQE 66
           +++G    GK+ +L +   K  + V  + TIG  VE      T++ K I   +WD  GQ+
Sbjct: 4   LMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKNISFTVWDVGGQD 55

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
             R + R Y++   G + V D   RE  N     L   L +       +  +++  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQD 112

Query: 123 LAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 160
           L +  A++  E  ++      +          A +   + E  
Sbjct: 113 LPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 69.2 bits (170), Expect = 6e-15
 Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 24/182 (13%)

Query: 3   YAYLF-----KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKP 54
           ++ +F     + +++G    GK+ +L +   K  + V  + TIG  VE      T++ K 
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKN 72

Query: 55  IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMT 113
           I   +WD  GQ+  R + R Y++   G + V D   RE     A  L+   Q     +  
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 114 IMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           +++  NK D+ +  A+   E  ++      +          A     + +     +  + 
Sbjct: 133 LLVFANKQDMPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190

Query: 169 KK 170
           K+
Sbjct: 191 KR 192

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIG--VEFGARMITIDNKPIKLQIWDTAG 64
           +++G    GK+ +L +          P    T+G  +E      T+  K I  ++WD  G
Sbjct: 26  LMLGLDNAGKTSILYRLHLGDVVTTVP----TVGVNLE------TLQYKNISFEVWDLGG 75

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNK 120
           Q   R   R Y+      + V D T R+        L + L++          +++  NK
Sbjct: 76  QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE---LRKSLLLIFANK 132

Query: 121 CDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            DL    A S  E  EQ             +++S+KT   + E        + ++
Sbjct: 133 QDLPD--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTAGQE 66
           +++G    GK+ +L +F            T+G  ++      T++++  KL IWD  GQ+
Sbjct: 22  LMLGLDNAGKTTILKKF--NGEDVDTISPTLGFNIK------TLEHRGFKLNIWDVGGQK 73

Query: 67  SFRSITRSYYRGAAGALLVYDITRR----ETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           S RS  R+Y+    G + V D   R    +    L S L + R    A  T+++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQD 130

Query: 123 LAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           L    A+S     E       + H       SA T +++          I  ++
Sbjct: 131 LPG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 66.5 bits (163), Expect = 5e-14
 Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTA 63
            K II+G    GK+ +L QF     + VH   TIG  VE       I     +  +WD  
Sbjct: 22  HKVIIVGLDNAGKTTILYQF--SMNEVVHTSPTIGSNVE------EIVINNTRFLMWDIG 73

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 122
           GQES RS   +YY      ++V D T RE  +     L     H +     +++  NK D
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 123 LAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 160
           +     ++  E  +       K+H        A T + + +  
Sbjct: 134 VKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 66.1 bits (162), Expect = 8e-14
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 25/166 (15%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTA 63
            + +I+G  G GK+ +L +   +  + V    TIG  VE      T+  K +KL +WD  
Sbjct: 19  LRILILGLDGAGKTTILYRL--QIGEVVTTKPTIGFNVE------TLSYKNLKLNVWDLG 70

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGN 119
           GQ S R   R YY   A  + V D T ++  +     L   L++       +  +++  N
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFAN 127

Query: 120 KCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 160
           K D     A+S  E  ++      K+     + +SA   + + E  
Sbjct: 128 KQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP-IKLQIWDTAGQE 66
           K +++G +G GKS +        +       +G         +     + L +WD  GQ+
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 67  SF-----RSITRSYYRGAAGALLVYDITRRETFN---HLASWLEDARQHANANMTIMLIG 118
            F            ++     + V+D+   E        A  L+  R++ + +  I ++ 
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLL 122

Query: 119 NKCDL--AHRRAVSTEEGEQFAKEH 141
           +K DL    +R    +   +   E 
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSET 147

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 63.8 bits (156), Expect = 5e-13
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 25/163 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKLQIWDTAGQE 66
           +++G    GK+ LL Q         H   T G  ++      ++ ++  KL +WD  GQ 
Sbjct: 20  LLLGLDNAGKTTLLKQL--ASEDISHITPTQGFNIK------SVQSQGFKLNVWDIGGQR 71

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCD 122
             R   RSY+      + V D   R+ F      L   LE+ +    + + +++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQD 128

Query: 123 LAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAF 160
           L    A    E  E       ++        SA T + V++  
Sbjct: 129 LLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIG--VEFGARMITIDNKPIKL 57
           +      + +++G    GK+ +L +   K  + V  + TIG  VE      T++ K I  
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKL--KLGEIVTTIPTIGFNVE------TVEYKNISF 211

Query: 58  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIML 116
            +WD  GQ+  R + R Y++   G + V D   RE  N     L          +  +++
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 271

Query: 117 IGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             NK DL +  A++  E  ++      +          A +   + E     +  +  +
Sbjct: 272 FANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 61.4 bits (150), Expect = 4e-12
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 16/131 (12%)

Query: 38  TIG--VEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95
           T+G  +        I    + +++WD  GQ  FRS+   Y RG +  + + D   +E   
Sbjct: 54  TVGFNMR------KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIE 107

Query: 96  HLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEE-GEQFA----KEHGLIFMEAS 149
              + L +         + ++++GNK DL    A+  +E  E+      ++  +     S
Sbjct: 108 ASKNELHNLLDKPQLQGIPVLVLGNKRDLPG--ALDEKELIEKMNLSAIQDREICCYSIS 165

Query: 150 AKTAQNVEEAF 160
            K   N++   
Sbjct: 166 CKEKDNIDITL 176

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 34/163 (20%)

Query: 18  GKSCLLLQFTDKRF---QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
           GK+ LL    + R    QP    T      +  + I N  IK   +D  G    R + + 
Sbjct: 35  GKTTLLHMLKNDRLATLQP----TWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKD 86

Query: 75  YYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 130
           Y+    G + + D    E F+     L +    A      ++  +++GNK D  +  AVS
Sbjct: 87  YFPEVNGIVFLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPN--AVS 141

Query: 131 TEEGEQFAKEHGL-------------IFMEASAKTAQNVEEAF 160
             E                       +FM  S        EAF
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFM-CSVVMRNGYLEAF 183

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 37/168 (22%), Positives = 57/168 (33%), Gaps = 39/168 (23%)

Query: 18  GKSCLLLQFTDKRF---QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
           GK+ LL    D R     P    T+     +  +TI    +    +D  G    R + ++
Sbjct: 37  GKTTLLHMLKDDRLGQHVP----TLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKN 88

Query: 75  YYRGAAGALLVYDITRRETFN----HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 130
           Y     G + + D    E        L S + D      AN+ I+++GNK D     A+S
Sbjct: 89  YLPAINGIVFLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE--AIS 143

Query: 131 TEEGEQFAKEHGL------------------IFMEASAKTAQNVEEAF 160
            E   +    +G                   +FM  S    Q   E F
Sbjct: 144 EERLREMFGLYGQTTGKGSVSLKELNARPLEVFM-CSVLKRQGYGEGF 190

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 19/134 (14%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMITIDNKPIKLQIWDTAGQESF 68
           II G    GK+ LL   T    +P    +   +         D     + + D  G    
Sbjct: 52  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLS------AADYDGSGVTLVDFPGHVKL 104

Query: 69  RSITRSYYRGAAGAL--LVY------DITR-RETFNHLASWLEDARQHANANMTIMLIGN 119
           R     Y +  A  +  L++      D  +   T   L   L          + I++  N
Sbjct: 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 164

Query: 120 KCDLAHRRAVSTEE 133
           K +L    A    +
Sbjct: 165 KSELFT--ARPPSK 176

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           II G    GK+ LL   T    +P    +        +   D     + + D  G    R
Sbjct: 16  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGSGVTLVDFPGHVKLR 69

Query: 70  SITRSYYRGAAGAL--LVY-----DITRR--ETFNHLASWLEDARQHANANMTIMLIGNK 120
                Y +  A  +  L++        ++   T   L   L          + I++  NK
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129

Query: 121 CDLAHRRAVSTEE 133
            +L    A    +
Sbjct: 130 SELFT--ARPPSK 140

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.6 bits (136), Expect = 6e-10
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
           ++G    GKS +         QP+  L +       +       I L + +  GQ ++  
Sbjct: 4   LMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYFE 61

Query: 71  ---ITRSYYRGAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLIGNKCDL 123
               +   ++     + V D          +LA  +E A +  N ++ I ++ +K D 
Sbjct: 62  PSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDG 118

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESF 68
           + +G    GK+ L ++    +++     +I     + +  ++N +   L + D  G ES 
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHESL 67

Query: 69  R-SITRSYYRGAAGALLVYDIT-----RRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           R  +   +   A   + V D        ++    L   L D+    N+  ++++  NK D
Sbjct: 68  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS-PSLLIACNKQD 126

Query: 123 LAHRRAVSTEE 133
           +A   A S + 
Sbjct: 127 IAM--AKSAKL 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 30/165 (18%), Positives = 45/165 (27%), Gaps = 39/165 (23%)

Query: 8   KYIII-GDTGVGKSCLLLQ-FTDKRFQ-----PVHDLTIGVEFGARMI---------TID 51
           K ++I G  G GK+ + L      + Q      +  L +        +          ID
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 52  N---------KPIKLQIWDTAGQESFRSI--TRSYYRGAAGALL----VYDITRRETFNH 96
                       IKL+I     Q   R +  ++ Y       LL    V +      FN 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNL 264

Query: 97  LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE-EGEQ-FAK 139
               L   R     +           L H     T  E +    K
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 28/124 (22%)

Query: 48  ITIDNKPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 94
           I ID  P+ + I DTAG             + +++ I +     A   L + D T  +  
Sbjct: 47  IHIDGMPLHI-I-DTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDAV 99

Query: 95  NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154
           +    W  +      A + I ++ NK D+          G      H LI +  SA+T +
Sbjct: 100 DPAEIW-PEFIARLPAKLPITVVRNKADIT-----GETLGMSEVNGHALIRL--SARTGE 151

Query: 155 NVEE 158
            V+ 
Sbjct: 152 GVDV 155

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 29/149 (19%)

Query: 48  ITIDNKPIKLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETF 94
              D    +L   DTAG             + S   +       A   L + D+      
Sbjct: 276 FIHDKTMFRL-T-DTAGLREAGEEIEHEGIRRSRMKMAE-----ADLILYLLDLGTERLD 328

Query: 95  NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154
           + L    E    H  A      + NK D A                  +     SA    
Sbjct: 329 DELTEIRELKAAHPAAKFLT--VANKLDRAANADALIRAIADGTGTEVI---GISALNGD 383

Query: 155 NVEEAFIKTAATIYKKIQDGVFDVSNESY 183
            ++   +K    +   +++          
Sbjct: 384 GIDT--LKQH--MGDLVKNLDKLHEASVL 408

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 9   YIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDT---- 62
            +I G   VGKS LL   T  +         T G+  G      ++   + QI DT    
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG----QFEDGYFRYQIIDTPGLL 225

Query: 63  ------AGQESFRSITRSYYRGAAGALLVYDITRRET---------FNHLASWLEDARQH 107
                   +   ++I    Y G    + ++D +             F  +          
Sbjct: 226 DRPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFPLEEQIHLFEEVHGEF------ 278

Query: 108 ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158
              ++  +++ NK D+A    +  +  E+F KE GL  ++ SA     ++ 
Sbjct: 279 --KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDL 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.81
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.68
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.65
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.62
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.62
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.6
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.58
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.57
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.56
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.51
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.51
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.41
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.4
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.38
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.95
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.92
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.89
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.89
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.52
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.36
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.24
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.19
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.18
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.08
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.9
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.78
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.58
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.46
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.39
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.37
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.37
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.34
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.34
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.33
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.33
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.3
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.3
2xxa_A	433	Signal recognition particle protein; protein trans	97.28
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.24
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.24
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.23
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.23
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.23
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.23
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.2
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.16
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.16
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.13
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.1
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.1
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.1
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.09
1g6h_A	257	High-affinity branched-chain amino acid transport	97.07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.06
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.04
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.03
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.03
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.03
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.03
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.02
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.02
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.02
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.02
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.01
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.95
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.94
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.94
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.92
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.92
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.91
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.91
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.91
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.88
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.87
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.87
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.87
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.86
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.83
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.81
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.8
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.79
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.78
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.78
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.78
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.76
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.76
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.75
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.75
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.74
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.74
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.74
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.73
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.73
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.73
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.72
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.72
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.71
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.71
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.7
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.69
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.67
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.65
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.64
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.62
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.6
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.59
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.59
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.58
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.58
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.58
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.58
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.57
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.55
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.54
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.54
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.54
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.54
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.53
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.53
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.52
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.52
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.52
1via_A	175	Shikimate kinase; structural genomics, transferase	96.51
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.51
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.51
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.5
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.5
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.48
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.48
3co5_A	143	Putative two-component system transcriptional RES	96.46
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.45
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.45
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.44
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.44
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.43
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.43
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.42
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.42
3uc9_A	233	Increased recombination centers protein 6; rossman	96.41
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.41
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.4
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.4
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.39
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.39
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.39
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.38
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.37
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.36
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.36
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.35
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.35
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.34
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.34
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.34
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.33
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.33
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.31
2og2_A	359	Putative signal recognition particle receptor; nuc	96.29
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.29
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.28
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.25
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.24
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.24
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.24
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.22
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.21
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.2
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.2
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.19
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.18
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.16
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.15
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.14
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.12
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.11
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.1
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.09
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.06
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.06
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.03
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.01
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.01
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.99
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.97
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.97
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.96
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.89
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.89
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.86
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.84
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.83
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.83
3bos_A	242	Putative DNA replication factor; P-loop containing	95.82
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.78
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.73
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.73
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.73
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.72
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.71
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.71
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.66
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.61
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.57
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.53
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.52
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.5
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.47
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.46
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.46
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.45
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.45
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.43
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.4
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.37
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.37
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.37
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.37
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.37
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.32
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.31
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.3
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.28
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.26
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.26
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.25
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.22
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.19
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.15
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.05
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.05
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.02
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.01
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.01
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.98
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.98
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.93
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.9
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.87
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.87
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.87
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	94.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.82
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.81
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.8
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.8
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.75
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.75
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.73
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.7
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.67
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.65
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.65
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	94.63
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.62

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.2e-43  Score=263.66  Aligned_cols=167  Identities=41%  Similarity=0.716  Sum_probs=146.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|.+|+|||||+++|..+.|...+.+|++.++....+.+++..+++.||||+|+++|..++..|++.++++|+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++++++++.++++|+++||++|.||+++|..|+
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999999888878899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          165 ATIYKKI  171 (211)
Q Consensus       165 ~~~~~~~  171 (211)
                      +.+....
T Consensus       172 ~~i~~~~  178 (216)
T 4dkx_A          172 AALPGME  178 (216)
T ss_dssp             HHC----
T ss_pred             HHHHhhh
Confidence            9886543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.6e-38  Score=236.01  Aligned_cols=173  Identities=45%  Similarity=0.835  Sum_probs=160.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            67889999999999999999999999999888888989999888899999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|.+
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 028237          163 TAATIYKKIQDGV  175 (211)
Q Consensus       163 l~~~~~~~~~~~~  175 (211)
                      |.+.+.+......
T Consensus       165 l~~~i~~~~~~~~  177 (206)
T 2bcg_Y          165 MARQIKESMSQQN  177 (206)
T ss_dssp             HHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999988765544

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=234.24  Aligned_cols=178  Identities=50%  Similarity=0.842  Sum_probs=148.9

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus         8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            35677899999999999999999999999998888888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ++|+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|
T Consensus        88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  167 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF  167 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766689999999999998767778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccC
Q 028237          161 IKTAATIYKKIQDGVFDV  178 (211)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~  178 (211)
                      .+|.+.+.++........
T Consensus       168 ~~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          168 EELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             HHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHhhhcccCc
Confidence            999999988776665543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=218.00  Aligned_cols=173  Identities=51%  Similarity=0.908  Sum_probs=159.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            45789999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+.+.++...+++++++||++|.|++++|.+
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887778999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 028237          163 TAATIYKKIQDGV  175 (211)
Q Consensus       163 l~~~~~~~~~~~~  175 (211)
                      |.+.+.++.....
T Consensus       173 l~~~i~~~~~~~~  185 (196)
T 3tkl_A          173 MAAEIKKRMGPGA  185 (196)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHhcccc
Confidence            9999998866544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=3.9e-36  Score=223.01  Aligned_cols=170  Identities=38%  Similarity=0.674  Sum_probs=151.0

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45689999999999999999999999999888888888898888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~  157 (211)
                      |+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. ......+++..++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999888866543    478999999999997 34566788888887 667899999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 028237          158 EAFIKTAATIYKKIQD  173 (211)
Q Consensus       158 ~~~~~l~~~~~~~~~~  173 (211)
                      ++|++|.+.+.+....
T Consensus       164 ~l~~~l~~~~~~~~~~  179 (207)
T 1vg8_A          164 QAFQTIARNALKQETE  179 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999877653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=216.75  Aligned_cols=167  Identities=34%  Similarity=0.545  Sum_probs=150.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            468999999999999999999999988888888766555 4567788888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++++|.+|
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  171 (206)
T 2bov_A           92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  171 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988877654 589999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028237          164 AATIYKKIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      ++.+.++..
T Consensus       172 ~~~i~~~~~  180 (206)
T 2bov_A          172 MREIRARKM  180 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            999988644

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7e-35  Score=215.76  Aligned_cols=171  Identities=45%  Similarity=0.815  Sum_probs=158.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            57789999999999999999999999999888888989999888899999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028237          163 TAATIYKKIQD  173 (211)
Q Consensus       163 l~~~~~~~~~~  173 (211)
                      |.+.+.++...
T Consensus       183 l~~~i~~~~~~  193 (201)
T 2ew1_A          183 LACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999887644

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1e-34  Score=211.79  Aligned_cols=174  Identities=57%  Similarity=0.959  Sum_probs=160.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            56789999999999999999999999999888888889889888899999889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+.+.+++..+++++++||++|.|++++|.+
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998888776678999999999999776778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcc
Q 028237          163 TAATIYKKIQDGVF  176 (211)
Q Consensus       163 l~~~~~~~~~~~~~  176 (211)
                      |.+.+.++......
T Consensus       167 l~~~~~~~~~~~~~  180 (186)
T 2bme_A          167 CARKILNKIESGEL  180 (186)
T ss_dssp             HHHHHHHHHHSCC-
T ss_pred             HHHHHHHHhhhcCC
Confidence            99999988776554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.6e-35  Score=217.09  Aligned_cols=176  Identities=57%  Similarity=0.941  Sum_probs=150.3

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      ++++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            35678899999999999999999999999988888888888888888889998999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+++.+++..+++++++||++|.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766789999999999997767778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcc
Q 028237          161 IKTAATIYKKIQDGVF  176 (211)
Q Consensus       161 ~~l~~~~~~~~~~~~~  176 (211)
                      .+|.+.+.++......
T Consensus       180 ~~l~~~i~~~~~~~~~  195 (200)
T 2o52_A          180 LKCARTILNKIDSGEL  195 (200)
T ss_dssp             HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999988776553

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=216.47  Aligned_cols=171  Identities=45%  Similarity=0.799  Sum_probs=148.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            46778999999999999999999999999888888888888888888899988999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~~~~  160 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..++ +++++||++|.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998877667899999999999987677888999999999999 89999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028237          161 IKTAATIYKKIQ  172 (211)
Q Consensus       161 ~~l~~~~~~~~~  172 (211)
                      .+|++.+.++..
T Consensus       185 ~~l~~~i~~~~~  196 (201)
T 2hup_A          185 LRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999987644

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.4e-35  Score=215.96  Aligned_cols=172  Identities=49%  Similarity=0.916  Sum_probs=129.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            57789999999999999999999999888878888888888888888899899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+..+...+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776668999999999999877777889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 028237          163 TAATIYKKIQDG  174 (211)
Q Consensus       163 l~~~~~~~~~~~  174 (211)
                      |.+.+.++..+.
T Consensus       165 l~~~i~~~~~~~  176 (183)
T 2fu5_C          165 LARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999998876643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.1e-34  Score=212.97  Aligned_cols=172  Identities=85%  Similarity=1.281  Sum_probs=154.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999999888888888888888899999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  177 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999776778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 028237          163 TAATIYKKIQDG  174 (211)
Q Consensus       163 l~~~~~~~~~~~  174 (211)
                      |.+.+.++...+
T Consensus       178 l~~~i~~~~~~~  189 (191)
T 2a5j_A          178 TAKEIYRKIQQG  189 (191)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999876643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-34  Score=213.57  Aligned_cols=174  Identities=42%  Similarity=0.789  Sum_probs=160.5

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      +.++..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            35678999999999999999999999999988888888888988888888998999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998887766689999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 028237          161 IKTAATIYKKIQDG  174 (211)
Q Consensus       161 ~~l~~~~~~~~~~~  174 (211)
                      ++|.+.+.++....
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.9e-34  Score=211.22  Aligned_cols=171  Identities=41%  Similarity=0.789  Sum_probs=157.4

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            35678999999999999999999999999988888888888888888889889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999988877666899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      +|.+.+.++..
T Consensus       178 ~l~~~i~~~~~  188 (189)
T 2gf9_A          178 RLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999987653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=211.22  Aligned_cols=171  Identities=46%  Similarity=0.826  Sum_probs=157.9

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            46778999999999999999999999999988888888898888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|.
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999888776667899999999999987667788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      +|.+.+.++..
T Consensus       181 ~l~~~i~~~~~  191 (193)
T 2oil_A          181 TVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.9e-34  Score=208.85  Aligned_cols=168  Identities=65%  Similarity=1.088  Sum_probs=154.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            35678999999999999999999999999888888888888888888899989999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988887767899999999999977777788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          162 KTAATIYK  169 (211)
Q Consensus       162 ~l~~~~~~  169 (211)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.4e-34  Score=208.02  Aligned_cols=167  Identities=36%  Similarity=0.692  Sum_probs=146.3

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            46788999999999999999999999999888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888776656899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          162 KTAATIY  168 (211)
Q Consensus       162 ~l~~~~~  168 (211)
                      +|.+.+.
T Consensus       162 ~l~~~~~  168 (170)
T 1z08_A          162 DLCKRMI  168 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-35  Score=216.36  Aligned_cols=171  Identities=42%  Similarity=0.797  Sum_probs=158.3

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            36788999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....++.+.+++..+++++++||++|.|++++|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      +|.+.+.++..
T Consensus       179 ~l~~~i~~~~~  189 (191)
T 3dz8_A          179 RLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcc
Confidence            99999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=6.6e-34  Score=206.53  Aligned_cols=168  Identities=39%  Similarity=0.738  Sum_probs=153.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            35679999999999999999999999999888888888888888888999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999988877678999999999999877777889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          163 TAATIYKK  170 (211)
Q Consensus       163 l~~~~~~~  170 (211)
                      |.+.+.+.
T Consensus       169 l~~~~~~~  176 (181)
T 2efe_B          169 IARRLPRV  176 (181)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhc
Confidence            99876543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=206.36  Aligned_cols=170  Identities=45%  Similarity=0.772  Sum_probs=155.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            67789999999999999999999999998888889989999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++|++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999998887654 47999999999999887778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 028237          163 TAATIYKKIQD  173 (211)
Q Consensus       163 l~~~~~~~~~~  173 (211)
                      |.+.+.+...+
T Consensus       165 l~~~~~~~~~~  175 (181)
T 3tw8_B          165 ITELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            99999887654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.4e-34  Score=208.24  Aligned_cols=170  Identities=32%  Similarity=0.455  Sum_probs=152.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....++|+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   79 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN   79 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence            6677889999999999999999999999988888888877777 777788999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A           80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV  159 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999988866554 58999999999999887888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          160 FIKTAATIYKKI  171 (211)
Q Consensus       160 ~~~l~~~~~~~~  171 (211)
                      |.+|++.+.+..
T Consensus       160 ~~~l~~~~~~~~  171 (181)
T 3t5g_A          160 FRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999887653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=8.4e-34  Score=203.68  Aligned_cols=165  Identities=41%  Similarity=0.774  Sum_probs=152.2

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35679999999999999999999999998888888889998888898999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+....++.+.++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999776677888899999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-33  Score=208.86  Aligned_cols=169  Identities=35%  Similarity=0.657  Sum_probs=152.6

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEE--------------------------
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP--------------------------   54 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   54 (211)
                      |+++..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            788899999999999999999999999999988888888888888888777655                          


Q ss_pred             -----------EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 028237           55 -----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL  123 (211)
Q Consensus        55 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  123 (211)
                                 +.+.+||+||++.+..++..+++.+|++|+|||++++.+++.+..|+..+....  +.|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence                       899999999999999999999999999999999999999999999998887765  499999999999 


Q ss_pred             CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      .....+..++++.+++..+++++++||++|.|++++|++|.+.+.++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            4556678899999999999999999999999999999999999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.4e-33  Score=202.62  Aligned_cols=166  Identities=41%  Similarity=0.733  Sum_probs=153.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            35678999999999999999999999999888888888999988889999989999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+++..++.+.+++..+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999998887667899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHH
Q 028237          162 KTAATI  167 (211)
Q Consensus       162 ~l~~~~  167 (211)
                      +|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.5e-34  Score=205.76  Aligned_cols=167  Identities=48%  Similarity=0.883  Sum_probs=145.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            45799999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+. .+....++.+.+++..+++++++||++|.|++++|.+|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998888776789999999999994 44567888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          164 AATIYKKI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99887653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=205.07  Aligned_cols=168  Identities=45%  Similarity=0.836  Sum_probs=145.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            567899999999999999999999998885 4667788888888888889989999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.|++++|.
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988877667899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          162 KTAATIYKK  170 (211)
Q Consensus       162 ~l~~~~~~~  170 (211)
                      +|.+.+.++
T Consensus       167 ~l~~~~~~~  175 (180)
T 2g6b_A          167 AIAKELKRR  175 (180)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999988654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.9e-34  Score=210.14  Aligned_cols=168  Identities=38%  Similarity=0.671  Sum_probs=153.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            56789999999999999999999999998888888889998888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999988776668999999999999776677889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          163 TAATIYKK  170 (211)
Q Consensus       163 l~~~~~~~  170 (211)
                      |.+.+.+.
T Consensus       180 l~~~i~~~  187 (192)
T 2fg5_A          180 ISRQIPPL  187 (192)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhh
Confidence            99876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.8e-34  Score=215.73  Aligned_cols=173  Identities=38%  Similarity=0.728  Sum_probs=154.1

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE----------EEEEEEEeCCCcchhhhh
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK----------PIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~   71 (211)
                      .++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+||+||++.+..+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            5678999999999999999999999999887777777777777777777765          789999999999999999


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      +..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999988887765543 58999999999999877777888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcC
Q 028237          151 KTAQNVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~~~~~~  174 (211)
                      ++|.|++++|++|.+.+.++....
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~~~~~  204 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKRMEQC  204 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999998876643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5e-34  Score=209.62  Aligned_cols=168  Identities=45%  Similarity=0.776  Sum_probs=147.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            46689999999999999999999999988888888888899888899999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~  161 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|++++|+
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  182 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL  182 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998888776678999999999999877777888888998874 78999999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          162 KTAATIYKK  170 (211)
Q Consensus       162 ~l~~~~~~~  170 (211)
                      +|.+.+.++
T Consensus       183 ~l~~~i~~~  191 (192)
T 2il1_A          183 KLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.9e-33  Score=206.12  Aligned_cols=172  Identities=38%  Similarity=0.713  Sum_probs=155.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE-EEEEEECCE---------EEEEEEEeCCCcchhhhhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMITIDNK---------PIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~   72 (211)
                      ++..++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ...+.+.+.         .+.+.+||+||++.+..++
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            567899999999999999999999999988888888888887 666666665         7899999999999999999


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  151 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  151 (211)
                      ..+++.+|++|+|||++++.+++.+..|+..+..+.. .+.|+++|+||+|+.+.+.+..++++.++...+++++++||+
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            9999999999999999999999999999998877665 689999999999998766778889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcC
Q 028237          152 TAQNVEEAFIKTAATIYKKIQDG  174 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~~~~~~~~~  174 (211)
                      +|.|++++|.+|.+.+.++..+.
T Consensus       168 ~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999998876643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=6.4e-34  Score=204.02  Aligned_cols=166  Identities=35%  Similarity=0.599  Sum_probs=151.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            45789999999999999999999999999888888888888888888999899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999988887665 58999999999999876677888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          163 TAATIYK  169 (211)
Q Consensus       163 l~~~~~~  169 (211)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-33  Score=209.55  Aligned_cols=172  Identities=46%  Similarity=0.869  Sum_probs=154.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            35579999999999999999999999998888888888888888899999889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+ .......++.+.++...+++++++||++|.|++++|.+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998888776668999999999999 44556788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 028237          163 TAATIYKKIQDGV  175 (211)
Q Consensus       163 l~~~~~~~~~~~~  175 (211)
                      |.+.+.++.....
T Consensus       176 l~~~~~~~~~~~~  188 (213)
T 3cph_A          176 LAKLIQEKIDSNK  188 (213)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhhh
Confidence            9999988875443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-33  Score=201.77  Aligned_cols=162  Identities=40%  Similarity=0.759  Sum_probs=149.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999998888888889998888888999899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---CCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ||++++.+++.+..|+..+......+.|+++++||+|+.+.   ..+..++.+.+++..+++++++||++|.|++++|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999888776678999999999999654   567788889999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |.+.+
T Consensus       163 l~~~i  167 (170)
T 1ek0_A          163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            98754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.6e-33  Score=203.93  Aligned_cols=165  Identities=33%  Similarity=0.543  Sum_probs=151.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4578999999999999999999999998888888877776 777788998999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecC-CCCCHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK-TAQNVEEAFI  161 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~g~~v~~~~~  161 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+ +|.|++++|.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence            9999999999999999998886644 3689999999999998877888999999999999999999999 9999999999


Q ss_pred             HHHHHHHH
Q 028237          162 KTAATIYK  169 (211)
Q Consensus       162 ~l~~~~~~  169 (211)
                      +|.+.+.+
T Consensus       175 ~l~~~i~~  182 (183)
T 3kkq_A          175 DLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=202.27  Aligned_cols=168  Identities=30%  Similarity=0.448  Sum_probs=138.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--hhhhhHHhhcCCcE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--FRSITRSYYRGAAG   81 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   81 (211)
                      +..++|+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            457899999999999999999999887765544 457777777888899899999999999987  56778888999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 2579999999999998777788888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028237          161 IKTAATIYKKIQ  172 (211)
Q Consensus       161 ~~l~~~~~~~~~  172 (211)
                      ++|.+.+.++..
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999999877654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=210.07  Aligned_cols=168  Identities=38%  Similarity=0.669  Sum_probs=139.9

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34567999999999999999999999999888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC------CCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA------HRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..++.+.++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999988877766689999999999995      3456778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYK  169 (211)
Q Consensus       156 v~~~~~~l~~~~~~  169 (211)
                      ++++|.+|++.+.+
T Consensus       184 v~el~~~l~~~i~~  197 (199)
T 2p5s_A          184 IVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=6.1e-33  Score=202.67  Aligned_cols=167  Identities=33%  Similarity=0.576  Sum_probs=146.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999998887777775 44555667788989999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....+..+.++...+++++++||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988877554 5899999999999974 4567888999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 028237          164 AATIYKKIQD  173 (211)
Q Consensus       164 ~~~~~~~~~~  173 (211)
                      .+.+.+....
T Consensus       161 ~~~~~~~~~~  170 (189)
T 4dsu_A          161 VREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9999887654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=7e-33  Score=200.42  Aligned_cols=166  Identities=36%  Similarity=0.656  Sum_probs=147.2

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            46789999999999999999999999999888888889998888899999889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~  157 (211)
                      |+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. ......++++.+++ ..+++++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988876654    578999999999997 45567888888888 567899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYK  169 (211)
Q Consensus       158 ~~~~~l~~~~~~  169 (211)
                      ++|++|++.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.8e-34  Score=209.24  Aligned_cols=164  Identities=30%  Similarity=0.468  Sum_probs=143.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4578999999999999999999999988877777766555 345667888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ +....++...++..++++++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999998888877766543  4789999999999975 45667888899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          162 KTAATIYK  169 (211)
Q Consensus       162 ~l~~~~~~  169 (211)
                      +|.+.+.+
T Consensus       164 ~l~~~~~~  171 (199)
T 2gf0_A          164 ELLTLETR  171 (199)
T ss_dssp             HHHHHCSS
T ss_pred             HHHHHHhh
Confidence            99886644

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=3.4e-34  Score=213.51  Aligned_cols=169  Identities=30%  Similarity=0.593  Sum_probs=145.2

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   82 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD   82 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence            6667789999999999999999999999988877778876555 455667888899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCC--------CCHHHHHHHHHHcCC-cEEEEec
Q 028237           81 GALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRA--------VSTEEGEQFAKEHGL-IFMEASA  150 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa  150 (211)
                      ++|+|||++++.+++.+. .|+..+..+. .+.|+++|+||+|+.+...        +..++++.++...++ +++++||
T Consensus        83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999987 7888887664 3899999999999865432        367888899999986 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      ++|.|++++|++|++.+.+..
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-
T ss_pred             CCCCCHHHHHHHHHHHHhhhh
Confidence            999999999999999887653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=7.2e-33  Score=200.85  Aligned_cols=168  Identities=34%  Similarity=0.567  Sum_probs=151.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45789999999999999999999999888888888777765 66778888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            9999999999999999988885443 468999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 028237          163 TAATIYKKIQ  172 (211)
Q Consensus       163 l~~~~~~~~~  172 (211)
                      |.+.+.+...
T Consensus       166 l~~~~~~~~~  175 (181)
T 2fn4_A          166 LVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhc
Confidence            9999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=4.1e-33  Score=204.06  Aligned_cols=166  Identities=41%  Similarity=0.780  Sum_probs=148.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-hhhHHhhcCCcEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~   82 (211)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            457999999999999999999999999988888888888888889999989999999999999998 8899999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC---CCHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA---QNVEE  158 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g---~~v~~  158 (211)
                      |+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++.+.+++..+++++++||+++   .|+.+
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999999887775 468999999999999877778888999999999999999999999   99999


Q ss_pred             HHHHHHHHHHH
Q 028237          159 AFIKTAATIYK  169 (211)
Q Consensus       159 ~~~~l~~~~~~  169 (211)
                      +|.+|++.+.+
T Consensus       178 l~~~l~~~i~~  188 (189)
T 1z06_A          178 IFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=204.82  Aligned_cols=165  Identities=30%  Similarity=0.486  Sum_probs=143.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45679999999999999999999999998888888877666 455778888999999999999988775 6799999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec-CCCCCHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA-KTAQNVEE  158 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~g~~v~~  158 (211)
                      |+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..++++++++..+++++++|| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            999999999999999999988876642   58999999999999877778889999999999999999999 89999999


Q ss_pred             HHHHHHHHHHH
Q 028237          159 AFIKTAATIYK  169 (211)
Q Consensus       159 ~~~~l~~~~~~  169 (211)
                      +|++|++.+.+
T Consensus       176 lf~~l~~~i~~  186 (187)
T 3c5c_A          176 VFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999988753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=3.7e-33  Score=202.03  Aligned_cols=164  Identities=41%  Similarity=0.744  Sum_probs=151.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999999988888888889988889999989999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|.
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999888777666899999999999987777788889999999999999999999999999999998


Q ss_pred             HHHH
Q 028237          165 ATIY  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +.+.
T Consensus       173 ~~~~  176 (179)
T 2y8e_A          173 AALP  176 (179)
T ss_dssp             HTCC
T ss_pred             HHHh
Confidence            8653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.4e-33  Score=201.46  Aligned_cols=165  Identities=27%  Similarity=0.416  Sum_probs=135.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-hhHHhhcCCcEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   84 (211)
                      .+||+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998877777767767888888888999999999999999998876 78888999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+.+++..+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999988877654 489999999999998777888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          164 AATIYKK  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=209.43  Aligned_cols=171  Identities=29%  Similarity=0.485  Sum_probs=145.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            4455689999999999999999999999999888888877766 566666777899999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+.+.+++..+++++++||++|.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999988876543 57899999999999877788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028237          160 FIKTAATIYKKIQ  172 (211)
Q Consensus       160 ~~~l~~~~~~~~~  172 (211)
                      |.+|.+.+.+...
T Consensus       178 ~~~l~~~i~~~~~  190 (201)
T 3oes_A          178 FTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998876643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=206.66  Aligned_cols=168  Identities=27%  Similarity=0.387  Sum_probs=145.2

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-hhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   81 (211)
                      .+..++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            45679999999999999999999986555444445556666677788899999999999999988765 78889999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      +|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf  179 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF  179 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence            9999999999999999999988876654 589999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          161 IKTAATIYKK  170 (211)
Q Consensus       161 ~~l~~~~~~~  170 (211)
                      .+|++.+.+.
T Consensus       180 ~~l~~~i~~~  189 (195)
T 3cbq_A          180 EGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999988643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.5e-33  Score=204.05  Aligned_cols=167  Identities=35%  Similarity=0.530  Sum_probs=147.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+||+||++.+..++..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999888777777878888888888876 67999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCc-EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHAN--ANMT-IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      +|+|||++++.+++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..++++.+++..+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888866432  2455 899999999987677788899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          159 AFIKTAATIYK  169 (211)
Q Consensus       159 ~~~~l~~~~~~  169 (211)
                      +|.+|.+.+.+
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=202.88  Aligned_cols=170  Identities=37%  Similarity=0.523  Sum_probs=148.9

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ..++..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d  100 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE  100 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence            4455679999999999999999999999998888888866655 55577888899999999999988 778899999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEE  158 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~-~v~~  158 (211)
                      ++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|. |+++
T Consensus       101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE  180 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence            99999999999999999999988877553 589999999999998767788899999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHh
Q 028237          159 AFIKTAATIYKKIQ  172 (211)
Q Consensus       159 ~~~~l~~~~~~~~~  172 (211)
                      +|++|++.+.++.+
T Consensus       181 l~~~l~~~i~~~~~  194 (196)
T 2atv_A          181 IFYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999987643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.1e-32  Score=202.58  Aligned_cols=166  Identities=27%  Similarity=0.537  Sum_probs=147.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            456799999999999999999999999988888888777765 4677888899999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC--CCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHH
Q 028237           83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEE  158 (211)
Q Consensus        83 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~g~~v~~  158 (211)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.  +.+..++++.+++..+++ ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 56777776553 57999999999999653  567789999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          159 AFIKTAATIYKK  170 (211)
Q Consensus       159 ~~~~l~~~~~~~  170 (211)
                      +|++|.+.+.++
T Consensus       178 l~~~l~~~i~~~  189 (194)
T 3reg_A          178 VFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.3e-32  Score=196.88  Aligned_cols=163  Identities=35%  Similarity=0.562  Sum_probs=144.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999988877777766555 45567888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++...++++.+++..+++++++||++|.|++++|++|.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence            999999999999999988877654 5899999999999987777888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       163 ~~i~~  167 (168)
T 1u8z_A          163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.8e-32  Score=198.71  Aligned_cols=167  Identities=34%  Similarity=0.545  Sum_probs=150.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988877777766555 4556788888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.++++++++||+++.|++++|++|
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  175 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  175 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877664 589999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 028237          164 AATIYKKIQ  172 (211)
Q Consensus       164 ~~~~~~~~~  172 (211)
                      .+.+.++..
T Consensus       176 ~~~i~~~~~  184 (187)
T 2a9k_A          176 MREIRARKM  184 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=4.8e-33  Score=201.96  Aligned_cols=169  Identities=35%  Similarity=0.641  Sum_probs=136.5

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            5668999999999999999999999999888888888888888878776 567899999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEecCCCCC
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAH-RRAVSTEEGEQFAK-EHGLIFMEASAKTAQN  155 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~  155 (211)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ .+.+..++++.+++ ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988876653    5899999999999954 34567888888888 5678899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKKI  171 (211)
Q Consensus       156 v~~~~~~l~~~~~~~~  171 (211)
                      ++++|++|.+.+.++.
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.5e-32  Score=197.84  Aligned_cols=166  Identities=16%  Similarity=0.294  Sum_probs=141.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |.....+||+|+|.+|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+||++|++.     ..+++++|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            666678999999999999999999999998876 667766544 66677888899999999999886     45788899


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEecCCCC
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEH-GLIFMEASAKTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~  154 (211)
                      ++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.  ..+.+..++++.++... +++++++||++|.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            99999999999999999998766655433   589999999999994  44567788889898876 6899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q 028237          155 NVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~~~~  173 (211)
                      |++++|++|++.+.+....
T Consensus       155 ~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999877553

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.8e-32  Score=196.08  Aligned_cols=163  Identities=34%  Similarity=0.557  Sum_probs=146.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999988877777755444 66778888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++...++.+.+++..+++++++||++|.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999888876554 5899999999999977777788889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.6e-33  Score=208.77  Aligned_cols=172  Identities=28%  Similarity=0.512  Sum_probs=116.1

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEECCE--EEEEEEEeCCCcchhhhhhHHhhc
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITIDNK--PIKLQIWDTAGQESFRSITRSYYR   77 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   77 (211)
                      .....++|+|+|.+|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||++.+..++..+++
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3456789999999999999999999998  777777778777787888888876  899999999999999999999999


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCC-
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKT-  152 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-  152 (211)
                      .+|++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..++++.+++..+++++++||++ 
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  175 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP  175 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred             hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence            99999999999999999999999999988765   6899999999999977 667788999999999999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q 028237          153 AQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~~~~~  173 (211)
                      |.|++++|++|.+.+.+....
T Consensus       176 ~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          176 GKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             ----CHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHh
Confidence            999999999999998876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.6e-32  Score=196.57  Aligned_cols=162  Identities=35%  Similarity=0.591  Sum_probs=144.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999988888888876665 35566788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            999999999999999888876543 58999999999999877777888899999887 7899999999999999999999


Q ss_pred             HHHHH
Q 028237          164 AATIY  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      .+.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98763

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-32  Score=200.24  Aligned_cols=165  Identities=48%  Similarity=0.835  Sum_probs=150.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            46899999999999999999999999988888888999988889999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ..+..++.+.+++..+++++++||+++.|++++|++|
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  172 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999888866543 5799999999999954 4567888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          164 AATIYKK  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      .+.+.+.
T Consensus       173 ~~~~~~~  179 (195)
T 1x3s_A          173 VEKIIQT  179 (195)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhh
Confidence            9988754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.7e-32  Score=196.38  Aligned_cols=163  Identities=27%  Similarity=0.411  Sum_probs=124.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|.+...... .++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            57999999999999999999987665433 33435554 45677889999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887654 36899999999999988778889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028237          165 ATIYKK  170 (211)
Q Consensus       165 ~~~~~~  170 (211)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=203.70  Aligned_cols=168  Identities=25%  Similarity=0.352  Sum_probs=141.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhhHHhhcCC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGA   79 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~   79 (211)
                      ++..+||+|+|.+|+|||||+++|.+...  ...+ ++++.++....+.+++..+.+.+||++|.+. +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            45679999999999999999999996443  3333 3456677777788899999999999999887 556777888999


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237           80 AGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      |++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988776543 25799999999999977667788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          159 AFIKTAATIYKKI  171 (211)
Q Consensus       159 ~~~~l~~~~~~~~  171 (211)
                      +|.+|++.+..+.
T Consensus       193 lf~~l~~~i~~~~  205 (211)
T 2g3y_A          193 LFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999886543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=5.2e-32  Score=197.66  Aligned_cols=161  Identities=17%  Similarity=0.324  Sum_probs=142.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|||||||+++|++..+...+.++ +..+ ...+.+++..+.+.+||++|++.+.     +++.+|+++
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            45799999999999999999999999988877776 4344 4778889999999999999998877     788899999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA--HRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEA  159 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~~  159 (211)
                      +|||++++.+++.+..|+..+..... .+.|+++++||+|+.  +.+.+..++++.+++..+ ++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l  170 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV  170 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence            99999999999999999999877654 579999999999994  456678899999999987 89999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          160 FIKTAATIYKKI  171 (211)
Q Consensus       160 ~~~l~~~~~~~~  171 (211)
                      |.+|++.+.+..
T Consensus       171 f~~l~~~i~~~~  182 (184)
T 3ihw_A          171 FQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-32  Score=198.76  Aligned_cols=164  Identities=27%  Similarity=0.524  Sum_probs=144.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            45679999999999999999999999988888888766655 45566777889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028237           83 LLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..+++..++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999987 6888887664 38999999999999653            35778889999999997 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ||++|.|++++|++|++.+.
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=199.83  Aligned_cols=168  Identities=26%  Similarity=0.464  Sum_probs=139.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            45679999999999999999999999888777777766554 45677888889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEE
Q 028237           83 LLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      |+|||++++.+++.+. .|+..+..+.. +.|+++|+||+|+.+            .+.+..++...++...++ +++++
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC  174 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence            9999999999999987 68888876653 899999999999965            245678889999999887 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          149 SAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      ||++|.|++++|++|++.+.+...
T Consensus       175 Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.9e-32  Score=204.59  Aligned_cols=167  Identities=25%  Similarity=0.455  Sum_probs=145.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            3468999999999999999999999999888888877776 456667788899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNH-LASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+++. +..|+..+.... .+.|+++|+||+|+.+.            +.+..++++.+++..++ +++++|
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  182 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS  182 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999998 688988887765 48999999999999652            56888999999999999 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHHHHHHh
Q 028237          150 AKTAQN-VEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       150 a~~g~~-v~~~~~~l~~~~~~~~~  172 (211)
                      |++|.| ++++|.+|++.+.+...
T Consensus       183 A~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          183 AFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCcccHHHHHHHHHHHHhccCc
Confidence            999998 99999999998876644

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.2e-32  Score=197.04  Aligned_cols=165  Identities=26%  Similarity=0.486  Sum_probs=143.1

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            46789999999999999999999999998888888877666 44567788889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEE
Q 028237           83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  148 (211)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++++.+++..+ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67888876654 48999999999999642            4577888999999887 689999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHH
Q 028237          149 SAK-TAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       149 sa~-~g~~v~~~~~~l~~~~~~  169 (211)
                      ||+ ++.|++++|+.+.+.+.+
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            998 689999999999988753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=8.9e-31  Score=193.28  Aligned_cols=173  Identities=53%  Similarity=0.880  Sum_probs=153.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            36789999999999999999999999998888888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ++|||+++..+++.+..|+..+......+.|+++++||+|+.+.......+++.++...++.++++||+++.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999998888888776655567899999999999776677788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 028237          163 TAATIYKKIQDGV  175 (211)
Q Consensus       163 l~~~~~~~~~~~~  175 (211)
                      |.+.+.+......
T Consensus       162 l~~~~~~~~~~~~  174 (199)
T 2f9l_A          162 ILTEIYRIVSQKQ  174 (199)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999988765443

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.4e-32  Score=202.88  Aligned_cols=172  Identities=31%  Similarity=0.465  Sum_probs=148.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .+..+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+... +..+.+.+||+||++.+..++..++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4567999999999999999999999988887777887777776666554 344899999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..++.+.++...+++++++||++|.|++++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  167 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL  167 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999999999887776799999999999987767888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 028237          162 KTAATIYKKIQDG  174 (211)
Q Consensus       162 ~l~~~~~~~~~~~  174 (211)
                      +|.+.+.+.....
T Consensus       168 ~l~~~~~~~~~~~  180 (218)
T 4djt_A          168 HLARIFTGRPDLI  180 (218)
T ss_dssp             HHHHHHHCCTTCC
T ss_pred             HHHHHHhcccccc
Confidence            9999987765443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=7.8e-31  Score=191.95  Aligned_cols=165  Identities=34%  Similarity=0.578  Sum_probs=135.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            358999999999999999999999988777777755444 4567788888999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....++++++++..+++++++||++|.|++++|.+|
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999888876654 5799999999999976 4567888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          164 AATIYKKI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      .+.+.+..
T Consensus       178 ~~~~~~~~  185 (190)
T 3con_A          178 VREIRQYR  185 (190)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99987653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=8.1e-31  Score=187.10  Aligned_cols=162  Identities=33%  Similarity=0.581  Sum_probs=143.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999988777777755444 56677888889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+..... .+.|+++++||+|+.+ .....++.+++++..+++++++||++|.|++++|.+|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876654 4799999999999976 45668888999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=4.3e-31  Score=195.30  Aligned_cols=164  Identities=30%  Similarity=0.543  Sum_probs=144.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..+||+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            45789999999999999999999999988888888776664 34677888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++++.+++..++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 56777776654 48999999999999664            45677888999999988 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 028237          150 AKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~~~  169 (211)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-31  Score=199.26  Aligned_cols=165  Identities=26%  Similarity=0.490  Sum_probs=143.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            45689999999999999999999999999888888877666 44566778889999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CcEEEE
Q 028237           83 LLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHG-LIFMEA  148 (211)
Q Consensus        83 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  148 (211)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+            .+.+..++++.+++..+ ++++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 67888887654 4799999999999964            24577888999999887 689999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHH
Q 028237          149 SAK-TAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       149 sa~-~g~~v~~~~~~l~~~~~~  169 (211)
                      ||+ ++.|++++|..|++.+..
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-31  Score=191.51  Aligned_cols=161  Identities=32%  Similarity=0.482  Sum_probs=141.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            58999999999999999999999888777777766555 34566788889999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      ||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+.+.+...+.+.++...+++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  161 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence            999999999998888888766543  479999999999997777777888889999999999999999999999999999


Q ss_pred             HHHH
Q 028237          164 AATI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      .+.+
T Consensus       162 ~~~~  165 (172)
T 2erx_A          162 LNLE  165 (172)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=4.5e-31  Score=192.27  Aligned_cols=162  Identities=28%  Similarity=0.564  Sum_probs=142.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999988877777766555 4556788889999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEec
Q 028237           85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASA  150 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  150 (211)
                      |||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...+++..++ +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 68887776543 8999999999998653            45677888899999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~  168 (211)
                      ++|.|++++|.+|.+.+.
T Consensus       162 ~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHh
Confidence            999999999999998775

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=3e-32  Score=200.29  Aligned_cols=168  Identities=19%  Similarity=0.244  Sum_probs=136.6

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------CCCceeEEEEEEE-EECCEEEEEEEEeCCCcchhh
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DLTIGVEFGARMI-TIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      .++..+||+|+|.+|+|||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3567899999999999999999766654 33332           2344444444444 556778999999999999999


Q ss_pred             hhhHHhhcCCcEEEEEEECC------CHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028237           70 SITRSYYRGAAGALLVYDIT------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL  143 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (211)
                      .++..+++++|++|+|||++      +..+++.+..|+..+. ....+.|+++|+||+|+.+  .+..++++.+++..++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      4566677777776652 2235899999999999965  3778899999999999


Q ss_pred             -cEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237          144 -IFMEASAKTAQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       144 -~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~  173 (211)
                       +++++||++|.|++++|++|.+.+.++..+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=214.04  Aligned_cols=167  Identities=52%  Similarity=0.921  Sum_probs=142.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            46789999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|.+
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999987776678999999999999877667677788899999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          163 TAATIYK  169 (211)
Q Consensus       163 l~~~~~~  169 (211)
                      |.+.+.+
T Consensus       190 l~~~l~~  196 (199)
T 3l0i_B          190 MAAEIKK  196 (199)
T ss_dssp             HTTTTTT
T ss_pred             HHHHHHH
Confidence            9886643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.4e-31  Score=194.57  Aligned_cols=165  Identities=28%  Similarity=0.534  Sum_probs=138.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            457899999999999999999999999888777776666643 4678888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++...++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 56777776654 48999999999999654            45677888899999888 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 028237          150 AKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~~~~  170 (211)
                      |++|.|++++|++|.+.+.+.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999987643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2.1e-32  Score=198.78  Aligned_cols=166  Identities=28%  Similarity=0.578  Sum_probs=126.3

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+....+||+|+|.+|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            56667899999999999999999999998887777776554442 23445666788999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCC----------CCHHHHHHHHHHcCC-cEEEE
Q 028237           81 GALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA  148 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (211)
                      ++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+...          +..++++.+++..++ +++++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999987 6888877664 3899999999999865432          467888899999886 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ||++|.|++++|++|.+.+.
T Consensus       161 Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.98  E-value=5.6e-31  Score=196.54  Aligned_cols=164  Identities=28%  Similarity=0.568  Sum_probs=123.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            368999999999999999999999888777777765444 5567788889999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEec
Q 028237           85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASA  150 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  150 (211)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..++++.+++..++ +++++||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            99999999999987 6888876654 47999999999999654            25677888999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++|.|++++|.+|.+.+.+.
T Consensus       191 ~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=1.1e-30  Score=191.89  Aligned_cols=167  Identities=25%  Similarity=0.370  Sum_probs=138.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-hhhhhHHhhcCCc
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-FRSITRSYYRGAA   80 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   80 (211)
                      +..+||+|+|.+|+|||||+++|.+...  ...+ ++++.++....+.+++..+.+.+||++|.+. +..++..+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            3568999999999999999999996432  3333 3456677777788899999999999999876 5567788899999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988776653 357999999999999766677788888888889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          160 FIKTAATIYKKI  171 (211)
Q Consensus       160 ~~~l~~~~~~~~  171 (211)
                      |.+|++.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.6e-31  Score=200.38  Aligned_cols=165  Identities=30%  Similarity=0.566  Sum_probs=147.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            35679999999999999999999888877777888888999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+...  ..+...+++..+++++++||++|.|++++|.+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  168 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  168 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887765 4899999999999976443  22566778888999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          163 TAATIYKK  170 (211)
Q Consensus       163 l~~~~~~~  170 (211)
                      |.+.+...
T Consensus       169 l~~~l~~~  176 (221)
T 3gj0_A          169 LARKLIGD  176 (221)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99988655

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=9.9e-31  Score=193.81  Aligned_cols=162  Identities=28%  Similarity=0.542  Sum_probs=138.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|+|||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3468999999999999999999999988877777754 444566777888899999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..++...+++..++ +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999987 6888777665 589999999999986532            2677888899999986 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028237          150 AKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~  167 (211)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.6e-29  Score=185.46  Aligned_cols=165  Identities=54%  Similarity=0.900  Sum_probs=150.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ++..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            56789999999999999999999999999888899999999888999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ++|+|+++..+++.+..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.++.++|++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999988888888776655567899999999999776667788899999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=4.5e-31  Score=194.41  Aligned_cols=163  Identities=16%  Similarity=0.290  Sum_probs=130.2

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ....++|+|+|.+|||||||+++|.+..+.. .+.++.+....  .+.  ...+.+.+||+||++.+..++..+++.+|+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            3567899999999999999999999999887 77777774443  333  345899999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcC--------CCCcEEEEEecCCCCCCCCCCHHHHHHH------HHHcCCcEEE
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHAN--------ANMTIMLIGNKCDLAHRRAVSTEEGEQF------AKEHGLIFME  147 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~  147 (211)
                      +|+|||++++.+++.+..|+..+.....        .+.|+++|+||+|+.+..  ..+++...      ++..++++++
T Consensus        90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEE
Confidence            9999999999999999888887755422        278999999999996542  22322221      1446778999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      +||++|.|++++|++|.+.+.+..
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             eeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1e-30  Score=186.72  Aligned_cols=157  Identities=19%  Similarity=0.339  Sum_probs=122.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|+|||||+++|.+..+.. +.++.+.  ....+..  ..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887754 4555553  2333333  3478999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ....++....     ...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999888887776542 358999999999999653  2333332221     1234579999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          161 IKTAATIYKK  170 (211)
Q Consensus       161 ~~l~~~~~~~  170 (211)
                      ++|.+.+.++
T Consensus       154 ~~l~~~i~~~  163 (164)
T 1r8s_A          154 DWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHhhc
Confidence            9999877543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.6e-29  Score=184.00  Aligned_cols=160  Identities=18%  Similarity=0.278  Sum_probs=130.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ...++|+|+|.+|+|||||+++|.+.. +...+.++.+  +....+.+++  +.+.+||+||++.+..++..+++.+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            357899999999999999999999887 5555666655  3444555554  7899999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCC
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQ  154 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~  154 (211)
                      |+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+  ....+++..+..     ..+++++++||++|.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999998888766543   4899999999999965  345566666553     235689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYK  169 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~  169 (211)
                      |++++|++|.+.+.+
T Consensus       173 gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          173 GLQEGVDWLQDQIQT  187 (190)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=5e-29  Score=181.74  Aligned_cols=160  Identities=23%  Similarity=0.335  Sum_probs=129.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.+.. ...+.++.+..  ...+.++  .+.+.+||+||++.+..++..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            457899999999999999999999887 56666665644  3445555  478999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988887776543 258999999999999653  33444433322     245679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.4e-29  Score=185.27  Aligned_cols=160  Identities=19%  Similarity=0.298  Sum_probs=129.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++..  +...  .+.+.+||+||++.+..++..+++.+|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            357899999999999999999999998887777877776643  3333  588999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ....++.....     ..+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999998887776543 258999999999999653  23333322211     234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYK  169 (211)
Q Consensus       158 ~~~~~l~~~~~~  169 (211)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=2.5e-29  Score=184.24  Aligned_cols=155  Identities=22%  Similarity=0.264  Sum_probs=127.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|+|||||+++|.+..+.. +.++.+.+  ...+.+++  +.+.+||+||++.+..++..+++.+|++|+
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999987753 44554543  45566666  889999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEecC
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE------------HGLIFMEASAK  151 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~  151 (211)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.++...            .+++++++||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            999999999999999888876543 25899999999999965  4566666665543            34679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028237          152 TAQNVEEAFIKTAAT  166 (211)
Q Consensus       152 ~g~~v~~~~~~l~~~  166 (211)
                      +|.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=4.4e-30  Score=184.54  Aligned_cols=158  Identities=22%  Similarity=0.335  Sum_probs=126.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+.. +.++.+..  ...+.++  ...+.+||+||++.+..++..+++.+|++|+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            46899999999999999999999887753 44554433  3445555  4789999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+..  ...++...     +...+++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            9999999999988888877655432 589999999999996532  23333222     223456799999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          159 AFIKTAATIYK  169 (211)
Q Consensus       159 ~~~~l~~~~~~  169 (211)
                      +|++|.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=8.6e-30  Score=187.95  Aligned_cols=155  Identities=23%  Similarity=0.286  Sum_probs=122.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|++|||||||+++|.+..+. .+.++.+.+  ...+.+++  +.+.+|||||++.+..++..+++.+|++|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999988764 344554444  34556666  799999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCcEE
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIFM  146 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~  146 (211)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++..++..                 .+++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            999999999999999988876543 25899999999999965  4667777776653                 345799


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ++||++|.|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.7e-29  Score=181.68  Aligned_cols=160  Identities=26%  Similarity=0.359  Sum_probs=125.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.++.+. .+.++.+.+  ...+.+++  +.+.+||+||++.+..++..+++.+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            35789999999999999999999988776 455555533  33445554  89999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.....     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988876653 25899999999999965  234555554432     235689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      ++|++|++.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=3.3e-30  Score=189.26  Aligned_cols=158  Identities=18%  Similarity=0.314  Sum_probs=119.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|..+.+.. +.++.+  +....+...  .+.+.+||+||++.+..++..+++.+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            457899999999999999999999877653 334434  333344444  488999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ....++.....     ..+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988887775543 258999999999999653  23333322211     234579999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          158 EAFIKTAATIY  168 (211)
Q Consensus       158 ~~~~~l~~~~~  168 (211)
                      ++|++|++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=6e-29  Score=180.85  Aligned_cols=160  Identities=21%  Similarity=0.307  Sum_probs=124.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+|+|++|+|||||+++|.+..+. .+.++.+.+  ...+.++  .+.+.+||+||++.+..++..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987542 334444433  3445555  478999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+..  ..+++.....     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999888887764432 2589999999999996542  3333333221     234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999876543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=3.8e-28  Score=192.18  Aligned_cols=163  Identities=29%  Similarity=0.558  Sum_probs=143.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            358999999999999999999999988888887765555 5567788889999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEec
Q 028237           85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASA  150 (211)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  150 (211)
                      |||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..+++..++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 67777766544 8999999999998543            45778889999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~  169 (211)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999987753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=5e-29  Score=181.17  Aligned_cols=156  Identities=27%  Similarity=0.363  Sum_probs=125.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+++  +.+.+||+||++.+..++..+++.+|++|
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3468999999999999999999999877 44455555443  3444554  88999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988887776543 358999999999999652  34455544432     234579999999999999


Q ss_pred             HHHHHHHHH
Q 028237          158 EAFIKTAAT  166 (211)
Q Consensus       158 ~~~~~l~~~  166 (211)
                      ++|++|.+.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999999764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=7.1e-30  Score=186.19  Aligned_cols=164  Identities=21%  Similarity=0.400  Sum_probs=121.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+   .+..+.+.+||++|++.+..++..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  455556777777776665544   235678999999999999999999999999


Q ss_pred             EEEEEEECCCH-hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC---HHHHHHHHHHcCCc----EEEEecCC
Q 028237           81 GALLVYDITRR-ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS---TEEGEQFAKEHGLI----FMEASAKT  152 (211)
Q Consensus        81 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~  152 (211)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.....   .+..+.+++..+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57888889998876654 478999999999986533221   22344556566776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHH
Q 028237          153 AQ-NVEEAFIKTAATIYKK  170 (211)
Q Consensus       153 g~-~v~~~~~~l~~~~~~~  170 (211)
                      +. ++.++++.|.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 8999998888776543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=7.2e-30  Score=186.71  Aligned_cols=160  Identities=19%  Similarity=0.289  Sum_probs=127.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|....+.. +.++.+..  ...+.++  .+.+.+||+||++.+..++..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877643 44554533  3345555  478999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+..  ...++....     ...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999999988888877755432 589999999999996532  233333222     2234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=9.2e-29  Score=179.70  Aligned_cols=160  Identities=23%  Similarity=0.338  Sum_probs=125.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|++|+|||||+++|.+..+ ..+.++.+..  ...+.+++  ..+.+||+||++.+..++..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998776 4445555533  34455554  88999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVE  157 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~  157 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++......     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888776543 358999999999999653  344554444322     23579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.4e-31  Score=196.96  Aligned_cols=162  Identities=28%  Similarity=0.564  Sum_probs=136.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4578999999999999999999998888777777654444 445566777888999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028237           84 LVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGL-IFMEAS  149 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  149 (211)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+..            .+..+++..+++..++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999998887 67777665443 78999999999996532            3455667788888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028237          150 AKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       150 a~~g~~v~~~~~~l~~~~  167 (211)
                      |++|.|++++|++|++.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=9.5e-29  Score=181.98  Aligned_cols=159  Identities=23%  Similarity=0.291  Sum_probs=120.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE--EEEEEEC-CEEEEEEEEeCCCcchhhhhh---HHhhc
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITID-NKPIKLQIWDTAGQESFRSIT---RSYYR   77 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~   77 (211)
                      +..+||+|+|.+|||||||++++.+. +...  ++.+.++.  .....+. +..+.+.+||++|++.|..+.   ..+++
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            45789999999999999999988764 3222  23233332  2223333 566899999999999987776   89999


Q ss_pred             CCcEEEEEEECCCH--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-------CCCCHHHHHHHHH----HcCCc
Q 028237           78 GAAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-------RAVSTEEGEQFAK----EHGLI  144 (211)
Q Consensus        78 ~~d~~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~~  144 (211)
                      .+|++|+|||+++.  ++++.+..|+..+... ..+.|+++|+||+|+.+.       +.+...+...+++    ..+++
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS  173 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred             cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence            99999999999997  6667777777666433 348999999999998542       2333445667777    66789


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 028237          145 FMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ++++||++ .|++++|..|++.+
T Consensus       174 ~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          174 FYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEECTTS-THHHHHHHHHHHHT
T ss_pred             eEEEEech-hhHHHHHHHHHHHh
Confidence            99999999 99999999999865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=5.7e-28  Score=173.09  Aligned_cols=153  Identities=20%  Similarity=0.203  Sum_probs=116.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------hhhHHhhc--
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------SITRSYYR--   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--   77 (211)
                      .++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...|++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998876655555555555555566665  689999999988764      44566665  


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+.+...+.. +.+.+++..+++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998654   3346655544   3789999999999865433332 3677888889999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          158 EAFIKTAATI  167 (211)
Q Consensus       158 ~~~~~l~~~~  167 (211)
                      ++|++|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=4.7e-28  Score=180.44  Aligned_cols=159  Identities=17%  Similarity=0.212  Sum_probs=114.6

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE-EEEEEEEeCCCcchhhh-hhHHhhcCCc
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRS-ITRSYYRGAA   80 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d   80 (211)
                      ....++|+|+|.+|+|||||+++|++..+...+.++ +..+..  +.+++. .+.+.+|||||++.+.. ++..|++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            345789999999999999999999998877666543 444433  555543 58899999999999988 8899999999


Q ss_pred             EEEEEEECCCHh-hHHHHHHHHH-HHHHh--cCCCCcEEEEEecCCCCCCCCCCHHHHHH----HHH-------------
Q 028237           81 GALLVYDITRRE-TFNHLASWLE-DARQH--ANANMTIMLIGNKCDLAHRRAVSTEEGEQ----FAK-------------  139 (211)
Q Consensus        81 ~~i~v~d~~~~~-~~~~~~~~~~-~l~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~-------------  139 (211)
                      ++|+|||+++.. ++..+..++. .+...  ...+.|+++|+||+|+.+...  .+....    ...             
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccc
Confidence            999999999854 4555555444 33331  235799999999999965432  221111    111             


Q ss_pred             --------------------Hc--CCcEEEEecCCC------CCHHHHHHHHHHH
Q 028237          140 --------------------EH--GLIFMEASAKTA------QNVEEAFIKTAAT  166 (211)
Q Consensus       140 --------------------~~--~~~~~~~sa~~g------~~v~~~~~~l~~~  166 (211)
                                          ..  +++++++||++|      .|++++|++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                11  567999999999      9999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=5.2e-27  Score=176.63  Aligned_cols=167  Identities=17%  Similarity=0.105  Sum_probs=118.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc------chh---hhhhHH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ------ESF---RSITRS   74 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~   74 (211)
                      +..++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||+      +..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            3468999999999999999999998876533333333344333444444  78999999998      331   122345


Q ss_pred             hhcCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHcC--CcEEE
Q 028237           75 YYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE---EGEQFAKEHG--LIFME  147 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  147 (211)
                      ++..+|++|+|||++++.++..  ...|+..+... ..+.|+++|+||+|+.+.+.+...   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5788999999999999876542  23344444332 137999999999999776555544   4566777777  88999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237          148 ASAKTAQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~~~~~~  173 (211)
                      +||++|.|++++|++|.+.+.+....
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.1e-27  Score=173.14  Aligned_cols=160  Identities=21%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++  ..+.+||+||++.+..++..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4578999999999999999999999988877777666666666677776  46789999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-------C--CcEEEEecCCCC
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-------G--LIFMEASAKTAQ  154 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~sa~~g~  154 (211)
                      +|||++++.....    +..+......+.|+++|+||+|+.+.   ..++........       +  ++++++||++|.
T Consensus        84 ~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            9999988432211    11222222347899999999999652   233333333322       2  479999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 028237          155 NVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~~~~  172 (211)
                      |++++|++|.+.+.....
T Consensus       157 gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          157 GLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHhhhhhcc
Confidence            999999999988776543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=188.81  Aligned_cols=164  Identities=26%  Similarity=0.408  Sum_probs=121.9

Q ss_pred             cceeeeEEEEcCC---------CCCHHHHHHHHhh---CCCCCCCCCCc-eeEEEEEE--------------EEECCEEE
Q 028237            3 YAYLFKYIIIGDT---------GVGKSCLLLQFTD---KRFQPVHDLTI-GVEFGARM--------------ITIDNKPI   55 (211)
Q Consensus         3 ~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~   55 (211)
                      .+..+||+|+|.+         |+|||||+++|.+   ..+...+.+++ +.++....              ..+++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4557999999999         9999999999998   45555555543 23322111              12456678


Q ss_pred             EEEEEe-----------------------CCCcchhhhhhHHhhc---------------------CCcEEEEEEECCCH
Q 028237           56 KLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLVYDITRR   91 (211)
Q Consensus        56 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~   91 (211)
                      .+.|||                       ++|++.+..++..+++                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            999999                       5566666667777777                     79999999999998


Q ss_pred             --hhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237           92 --ETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus        92 --~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                        .+++.+..|+..+... ...+.|+++|+||+|+.+.+.  .++++.+++. .+++++++||++|.|++++|.+|.+.+
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence              8999999999888665 335899999999999865433  2567777776 488999999999999999999998876


Q ss_pred             H
Q 028237          168 Y  168 (211)
Q Consensus       168 ~  168 (211)
                      .
T Consensus       254 ~  254 (255)
T 3c5h_A          254 D  254 (255)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=8e-27  Score=182.95  Aligned_cols=160  Identities=19%  Similarity=0.314  Sum_probs=126.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-----hhhhHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-----RSITRSYY   76 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~   76 (211)
                      ..+||+|+|.+|+|||||+++|+++....   .+.+|.+..+.  .+.+.+ .+.+.+||+||++.+     ..++..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            35899999999999999999998874332   34444444443  344444 689999999999988     67889999


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCC--CCC----CCHHHHHHHHHHcC---CcE
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH--RRA----VSTEEGEQFAKEHG---LIF  145 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  145 (211)
                      +++|++|+|||++++.+++.+..|...+....  ..+.|+++++||+|+.+  .+.    ...++++++++.++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877765554322  35899999999999965  332    44567788888887   689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 028237          146 MEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       146 ~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      +++||++ .++.++|..+++.+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 899999998887543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.8e-28  Score=192.09  Aligned_cols=158  Identities=18%  Similarity=0.306  Sum_probs=119.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|.+|+|||||+++|.+..+... .+|.+..+  ..+...  .+.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            357999999999999999999998876433 23434333  233333  4789999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----HGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~g~~v~~  158 (211)
                      |||++++.+++.+..++..+..... .+.|++||+||+|+.+..  ..+++......     .+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            9999999999998888776654433 589999999999996532  33333332221     245699999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          159 AFIKTAATIYK  169 (211)
Q Consensus       159 ~~~~l~~~~~~  169 (211)
                      +|++|.+.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=8.1e-27  Score=171.11  Aligned_cols=158  Identities=15%  Similarity=0.208  Sum_probs=109.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (211)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++   ++.+|||||          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34578999999999999999999999876665566656665555555544   689999999          67778888


Q ss_pred             HHhhcCC---cEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--HHHHH-HHHHcCCcEE
Q 028237           73 RSYYRGA---AGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--EEGEQ-FAKEHGLIFM  146 (211)
Q Consensus        73 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~  146 (211)
                      ..+++.+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+......  +++.+ +....+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            8888777   9999999999876655432 2222222   4789999999999976443221  22222 2223457899


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ++||++|.|++++|++|.+.+
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCCCHHHHHHHHHHHh
Confidence            999999999999999998865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=7.2e-27  Score=170.56  Aligned_cols=156  Identities=19%  Similarity=0.209  Sum_probs=118.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC-----------cchhhhhhHHh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-----------QESFRSITRSY   75 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   75 (211)
                      ++|+|+|.+|+|||||+++|.+..+...+.++.+..  ...+.+.    .+.+||+||           ++.+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            699999999999999999999988876666654333  3333333    688999999           66777888888


Q ss_pred             hcC-CcEEEEEEECCCHhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028237           76 YRG-AAGALLVYDITRRETFNHL-ASWLED--------A-RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI  144 (211)
Q Consensus        76 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      ++. ++++++||++.+..+++.+ ..|...        + ......+.|+++|+||+|+.+..   .+..+.+++..+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            887 7777777777777777665 445432        1 22223589999999999986543   56677888888764


Q ss_pred             -------EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          145 -------FMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       145 -------~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                             ++++||++|.|++++|++|.+.+.+..
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                   799999999999999999999886643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.3e-26  Score=169.04  Aligned_cols=158  Identities=20%  Similarity=0.183  Sum_probs=123.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------hhhHHhhc-
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------SITRSYYR-   77 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   77 (211)
                      ..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+.+  ..+.+|||||+..+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            358999999999999999999998766555556656666666676665  789999999988764      45666664 


Q ss_pred             -CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           78 -GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        78 -~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                       .+|++++|+|.++.   +....|+..+..   .+.|+++++||+|+.+..... ...+.+++..+++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchhH---HHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             58999999999863   444556655544   478999999999986544333 3567788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIYKKI  171 (211)
Q Consensus       157 ~~~~~~l~~~~~~~~  171 (211)
                      +++|++|.+.+.+..
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=5.8e-26  Score=161.42  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=107.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-------hhhhhHHhhcC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYYRG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   78 (211)
                      .||+|+|.+|+|||||+++|.+..+. ....++.+.+.....+..++  ..+.+||+||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988754 23333334455555566666  4789999999876       45567778999


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~  157 (211)
                      +|++|+|+|+++..+... ..+...+..   .+.|+++|+||+|+.+..    ++.++++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998543322 112222222   378999999999996542    2334445 5677 79999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          158 EAFIKTAATI  167 (211)
Q Consensus       158 ~~~~~l~~~~  167 (211)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.8e-27  Score=185.70  Aligned_cols=157  Identities=17%  Similarity=0.226  Sum_probs=118.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh---hhHHhhcCCcE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS---ITRSYYRGAAG   81 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   81 (211)
                      ||+++|..|+|||||++++.+..++.   ...+|.+.++..    ++ ..++++||||+|+++|..   ++..|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654432   245666666642    33 358999999999999964   46899999999


Q ss_pred             EEEEEECCCH--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-------CCCCHHHHHHHHHH----cCCcEEEE
Q 028237           82 ALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-------RAVSTEEGEQFAKE----HGLIFMEA  148 (211)
Q Consensus        82 ~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  148 (211)
                      +|+|||++++  +.......|+..+... .++.|+++++||+|+.+.       +++..++.+++++.    .++++++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3333333444444333 358999999999999653       23445556667765    57889999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      ||++ .+|.++|..+++.+....
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhH
Confidence            9998 589999999998766543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.4e-26  Score=167.05  Aligned_cols=154  Identities=21%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------h--hHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------I--TRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~--~~~~   75 (211)
                      ..++|+|+|.+|+|||||+++|.+.... ....++.+.++....+.+++  ..+.+|||||++.+..      +  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3579999999999999999999987643 23334445556666677776  4588999999864321      1  1245


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      ++.+|++++|||++++.+++ ...|+..+......+.|+++|+||+|+.+...       .++...+++++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            88999999999999877765 34676666665555799999999999854211       11222467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIY  168 (211)
Q Consensus       156 v~~~~~~l~~~~~  168 (211)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=9.1e-26  Score=172.72  Aligned_cols=155  Identities=21%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------hhHHhh--
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------ITRSYY--   76 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   76 (211)
                      ..++|+|+|.+|||||||+|+|++..+.....+.++.......+...+  ..+.+||+||+..+..      +...|+  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            468999999999999999999999877655555555555554555444  7899999999887654      335565  


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      ..+|++|+|+|+++.++..   .|...+..   .+.|+++++||+|+.+...... +...+++..+++++++||++|.|+
T Consensus        82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL  154 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred             cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence            5899999999999866432   34444433   3799999999999865444432 367788889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIY  168 (211)
Q Consensus       157 ~~~~~~l~~~~~  168 (211)
                      +++|++|.+.+.
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=3.3e-26  Score=176.18  Aligned_cols=153  Identities=20%  Similarity=0.199  Sum_probs=117.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------hhhHHhhc-
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------SITRSYYR-   77 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   77 (211)
                      ..++|+++|.+|||||||+|+|++........+  |.+.......+.. ...+.+|||||+..+.      .+...|+. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            468999999999999999999998775555554  3444444455555 6789999999988775      45666765 


Q ss_pred             -CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           78 -GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        78 -~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                       .+|++|+|+|+++.++.   ..|...+..   .+.|+++++||+|+.+..... .+...+++..+++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986543   334444443   389999999999986543333 3457788888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 028237          157 EEAFIKTAATI  167 (211)
Q Consensus       157 ~~~~~~l~~~~  167 (211)
                      +++|.+|.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=3.7e-26  Score=174.67  Aligned_cols=151  Identities=18%  Similarity=0.136  Sum_probs=119.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh----------hhHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS----------ITRSYY   76 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   76 (211)
                      .+|+|+|.+|||||||+|+|++..+.....++++.+.....+.+.+  ..+.+|||||...+..          +...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            5899999999999999999999877666677767777777777776  4899999999876653          566777


Q ss_pred             --cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 028237           77 --RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~  154 (211)
                        +.+|++|+|+|+++.++...+..++.      ..+.|+++++||+|+.+..... .....+.+..+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999998665444333322      2389999999999985543222 22456777889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAAT  166 (211)
Q Consensus       155 ~v~~~~~~l~~~  166 (211)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=1.7e-26  Score=193.73  Aligned_cols=165  Identities=19%  Similarity=0.257  Sum_probs=125.2

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEE------EEE--CCEEEEEEEEeCCCcchhhhhhH
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM------ITI--DNKPIKLQIWDTAGQESFRSITR   73 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~   73 (211)
                      .....+||+|+|.+|||||||+++|++..+...+.++.+.++....      +.+  ++..+.+.+||+||++.+..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3456799999999999999999999999888888888777775442      112  33468999999999999999999


Q ss_pred             HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      .+++.+|++|+|||+++.+   .+..|+..+..+.. +.|+++|+||+|+.+...+..++++.++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            9999999999999998654   45677777776653 7999999999999877777888888898889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATIYKK  170 (211)
Q Consensus       154 ~~v~~~~~~l~~~~~~~  170 (211)
                      .|++++|..|.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999877553

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=2e-25  Score=163.43  Aligned_cols=157  Identities=15%  Similarity=0.231  Sum_probs=113.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT   72 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (211)
                      ....++|+|+|.+|+|||||+++|++.... ...++.+.+........+.   ++.+||+||          .+.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            345689999999999999999999988743 3334445555444444443   577999999          66677788


Q ss_pred             HHhhcCC---cEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHc-CCc
Q 028237           73 RSYYRGA---AGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEH-GLI  144 (211)
Q Consensus        73 ~~~~~~~---d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~-~~~  144 (211)
                      ..+++.+   |++++|+|..+..+..  .+..|+..      .+.|+++|+||+|+.+...  ...+++..++... +++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            8887766   8999999998754332  22333322      2789999999999864322  2234455666653 478


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          145 FMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ++++||++|.|++++|++|.+.+.+
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999987753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=4.5e-25  Score=173.03  Aligned_cols=161  Identities=17%  Similarity=0.101  Sum_probs=123.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh----------hhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR----------SIT   72 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~   72 (211)
                      ...-.|+|+|.+|||||||+|+|++..+..... +..+........... ...++.+|||||+..+.          ...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            445689999999999999999999988764333 222333322333333 14789999999985433          566


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEec
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASA  150 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa  150 (211)
                      ..+++.+|++++|+|+++..+......|+..+..   .+.|+++|+||+|+........+....+.+..+  .+++++||
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA  163 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA  163 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            7788999999999999998777776666666654   378999999999997434455666777877775  77999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~  168 (211)
                      ++|.|++++|++|.+.+.
T Consensus       164 ~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          164 LKGANLDELVKTILKYLP  181 (308)
T ss_dssp             TTTBSHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHhCc
Confidence            999999999999988763

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=4.9e-25  Score=170.02  Aligned_cols=156  Identities=21%  Similarity=0.190  Sum_probs=121.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh------hhHHhh--c
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS------ITRSYY--R   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~   77 (211)
                      .++|+|+|++|||||||+|+|++..+.....++.+.+.....+.+.+  ..+.+||+||+..+..      +...|+  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            48999999999999999999999887666777777777777777766  4699999999887665      566666  6


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      .+|++|+|+|+++.+.   ...++..+....  ..|+++++||+|+.+....... ...+.+..+++++++||++|.|+.
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            8999999999998642   223333333331  3899999999997543322222 677788889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYK  169 (211)
Q Consensus       158 ~~~~~l~~~~~~  169 (211)
                      ++|..+.+.+.+
T Consensus       155 ~l~~~i~~~~~~  166 (271)
T 3k53_A          155 ELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999887643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=2.8e-25  Score=166.37  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=111.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCc----------chhhhhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQ----------ESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~   72 (211)
                      ...++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.+|||||.          +.+..+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            456899999999999999999999986322222233334444444444 44578999999994          4456666


Q ss_pred             HHhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH-------
Q 028237           73 RSYYRG---AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKE-------  140 (211)
Q Consensus        73 ~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~-------  140 (211)
                      ..|++.   +|++|+|+|+.+..+.. ...++..+..   .+.|+++|+||+|+.+....  ..+...+....       
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            677666   77899999998754322 2233344333   37899999999998653221  11222222222       


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          141 HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       141 ~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      .+++++++||++|.|+.++|++|.+.+....
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            4567999999999999999999998876543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=1.7e-25  Score=172.75  Aligned_cols=153  Identities=17%  Similarity=0.152  Sum_probs=116.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh----------hhhHHh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR----------SITRSY   75 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~   75 (211)
                      .++|+|+|.+|||||||+|+|++..+.....++++.+.....+...+  ..+.+|||||+..+.          .+...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999877666666666666666666554  578899999987665          234444


Q ss_pred             h--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           76 Y--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        76 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      +  +.+|++|+|+|+++.+....+..+   +...   +.|+++++||+|+.+..... .....+.+..+++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  799999999999986654443333   3332   79999999999985433221 2246677888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATI  167 (211)
Q Consensus       154 ~~v~~~~~~l~~~~  167 (211)
                      .|++++|++|.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=4.6e-25  Score=164.66  Aligned_cols=144  Identities=20%  Similarity=0.296  Sum_probs=106.5

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcC-
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG-   78 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   78 (211)
                      ....++|+|+|++|+|||||+++|.+..+...   +.++.+..+         ....+.+||+||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            34678999999999999999999999876542   333322221         45678999999999999888888877 


Q ss_pred             ---CcEEEEEEECC-CHhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHHcCCc
Q 028237           79 ---AAGALLVYDIT-RRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVS------TEEGEQFAKEHGLI  144 (211)
Q Consensus        79 ---~d~~i~v~d~~-~~~~~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  144 (211)
                         +|++|+|||++ ++.++..+..|+..+...    ...+.|+++|+||+|+.+.....      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888888888887776554    23589999999999997654433      34566777777788


Q ss_pred             EEEEecCCCCC
Q 028237          145 FMEASAKTAQN  155 (211)
Q Consensus       145 ~~~~sa~~g~~  155 (211)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=5.4e-24  Score=174.33  Aligned_cols=161  Identities=16%  Similarity=0.124  Sum_probs=116.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhhhH
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSITR   73 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~   73 (211)
                      ..++|+|+|.+|+|||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||+          +.|..+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            5689999999999999999999987654 33344445555555566666  46899999997          44554443


Q ss_pred             -HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHHH----cCCcEEE
Q 028237           74 -SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-FAKE----HGLIFME  147 (211)
Q Consensus        74 -~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~  147 (211)
                       .+++.+|++++|+|++++.+.+.. .|...+..   .+.|+++++||+|+.+.+....++..+ +.+.    .++++++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence             478899999999999998776664 45554443   479999999999997655444444332 2222    3678999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 028237          148 ASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       148 ~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      +||++|.|++++|..+.+.+.+..
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EecccCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998887653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=2.2e-23  Score=171.56  Aligned_cols=156  Identities=18%  Similarity=0.131  Sum_probs=99.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhh--------HHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--------RSYY   76 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   76 (211)
                      .++|+|+|.+|+|||||+|+|++... .....++++.+.....+.+++  +.+.+|||||+..+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            57899999999999999999998753 344444445666666677776  679999999987765443        3468


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      +.+|++|+|+|++++.+++.+..+...+....  +.|+++|+||+|+.+....   ..+.+.+....+++++||++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            89999999999999877654333333333322  7899999999999654322   223444443478999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIY  168 (211)
Q Consensus       157 ~~~~~~l~~~~~  168 (211)
                      +++|++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998775

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.9e-23  Score=164.15  Aligned_cols=162  Identities=18%  Similarity=0.168  Sum_probs=120.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh---------hhhHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---------SITRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~   75 (211)
                      ..++|+++|.+|+|||||+++|.+........+..+.......+...  ...+.+|||||.....         .....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            46799999999999999999999876533322332333333333334  3679999999975421         122244


Q ss_pred             hcCCcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 028237           76 YRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA  153 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g  153 (211)
                      ...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.+...  .++...++...+++++++||++|
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence            56799999999998876  66777778877766543 799999999999865322  34566677778899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       154 ~~v~~~~~~l~~~~~~~~  171 (211)
                      .|++++|++|.+.+....
T Consensus       321 ~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999999886653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.6e-23  Score=172.53  Aligned_cols=163  Identities=17%  Similarity=0.126  Sum_probs=120.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG----------QESFRSIT   72 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   72 (211)
                      +..++|+++|.+|+|||||+++|++... .....++++.+.....+.+++  ..+.+|||||          ++.|..++
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3468999999999999999999997642 333444444554445566666  4889999999          56676665


Q ss_pred             H-HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEE
Q 028237           73 R-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-----GLIFM  146 (211)
Q Consensus        73 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  146 (211)
                      . .+++.+|++|+|+|+++..+.. ...|...+..   .++|+++|+||+|+.+.+....+++.+.++..     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            5 4789999999999998754322 2334444433   37999999999999876666667777666654     57899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          147 EASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      ++||++|.|++++|..+.+.+.+...
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998876644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=5.9e-23  Score=168.33  Aligned_cols=177  Identities=21%  Similarity=0.218  Sum_probs=115.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhhhHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES---------FRSITRSYY   76 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   76 (211)
                      .+|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+.+  ..+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999988754 34444555556666677776  4688999999664         344567789


Q ss_pred             cCCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH-HHHHHHcCC-cEEEEecCC
Q 028237           77 RGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG-EQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~  152 (211)
                      +.+|++|+|+|+.+..+..  .+..|+.   .   .++|+++++||+|+.+.  . ..+. ..+. ..++ +++++||.+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998754432  2333322   2   27899999999997432  0 1222 3343 4566 689999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCC
Q 028237          153 AQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPS  196 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (211)
                      |.|+.++|+++.+.+.+..... .....+...++++-.|.|+..
T Consensus       150 g~gv~~L~~~i~~~l~~~~~~~-~~~~~~~~~~kvaivG~~gvG  192 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEKGLDL-ESKPEITDAIKVAIVGRPNVG  192 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHTTCCS-SSCCCCCSCEEEEEECSTTSS
T ss_pred             CCCHHHHHHHHHHhcccccccc-hhccccccCceEEEECCCCCC
Confidence            9999999999998876432110 011112345677766666543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=1.9e-23  Score=163.07  Aligned_cols=153  Identities=20%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhhhHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYY   76 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   76 (211)
                      ..+|+|+|.+|+|||||+|+|++..+... ..+.++.......+...  ..++.+|||||...        +......++
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            45799999999999999999999887643 23322222222222323  47899999999765        455667789


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHH-HHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCCC
Q 028237           77 RGAAGALLVYDITRRETFNHLASWL-EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTA  153 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~g  153 (211)
                      +.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+.+...    .+...++.+  ..+++++||++|
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g  157 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDE  157 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCH
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCC
Confidence            9999999999998764433  2333 3343322 4789999999999864321    023333332  246999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATI  167 (211)
Q Consensus       154 ~~v~~~~~~l~~~~  167 (211)
                      .|++++|+.|.+.+
T Consensus       158 ~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          158 RQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999988754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=1e-23  Score=167.43  Aligned_cols=125  Identities=17%  Similarity=0.245  Sum_probs=103.4

Q ss_pred             EEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcE
Q 028237           46 RMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTI  114 (211)
Q Consensus        46 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~  114 (211)
                      ..+.++  .+.+.+||++|++.+..+|.+|+++++++|||||+++          ..++++...|+..+..+.. .+.|+
T Consensus       186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            334444  4889999999999999999999999999999999998          4578888888888866543 58999


Q ss_pred             EEEEecCCCCCCC---------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          115 MLIGNKCDLAHRR---------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       115 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      +|++||+|+.+..               .+..+++..++.           ..++.+++|||+++.||.++|.++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999984321               356788888876           35677999999999999999999999988


Q ss_pred             HHHh
Q 028237          169 KKIQ  172 (211)
Q Consensus       169 ~~~~  172 (211)
                      +...
T Consensus       344 ~~~l  347 (353)
T 1cip_A          344 KNNL  347 (353)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            7643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=8.8e-24  Score=167.28  Aligned_cols=158  Identities=16%  Similarity=0.190  Sum_probs=120.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhhHHhhc---CC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSITRSYYR---GA   79 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   79 (211)
                      .+|+|+|.+|||||||+++|+.........+..+.......+.+++ ...+.+||+||+.+    +..+...|++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            4799999999999999999998765433333334444444455553 25789999999643    3345555554   49


Q ss_pred             cEEEEEEECCC---HhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecCC
Q 028237           80 AGALLVYDITR---RETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAKT  152 (211)
Q Consensus        80 d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~  152 (211)
                      |++|+|+|+++   +.+++.+..|+.++..+..  .++|+++|+||+|+.+.    .+..+.+.+...  ++++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7788888889888887653  48999999999998642    244566777766  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATIYK  169 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~  169 (211)
                      +.|++++|.+|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999987754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=7.4e-23  Score=168.60  Aligned_cols=154  Identities=21%  Similarity=0.163  Sum_probs=117.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-hhh--------hhhHHh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-SFR--------SITRSY   75 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~   75 (211)
                      .++|+|+|.+|+|||||+|+|++... .....+.++.+.....+.+++  ..+.+|||||.. .+.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            38999999999999999999998754 344455556666667777776  578999999987 543        234567


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      ++.+|++|+|+|++++.+.+... ++..+     .+.|+++|+||+|+.+.  ...+++..+.. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            89999999999999877665432 22222     37899999999999653  34555555432 447899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKK  170 (211)
Q Consensus       156 v~~~~~~l~~~~~~~  170 (211)
                      ++++|++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=5e-24  Score=172.82  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=115.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh-------hHHh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI-------TRSY   75 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~   75 (211)
                      ...++|+|+|..|+|||||+++|++..+. ....+..+.+.....+.+.+. ..+.+|||||+..+..+       ...+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            45789999999999999999999988763 333444455555566666553 38999999999877554       4568


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~  155 (211)
                      +..+|++|+|+|+.....   ...|+..+...   +.|+++|+||+|+.+....  +..+.+.+.++++++++||++|.|
T Consensus       111 l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             HhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence            899999999999943332   34555555554   7999999999999765443  556677777789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYK  169 (211)
Q Consensus       156 v~~~~~~l~~~~~~  169 (211)
                      ++++|++|.+.+.+
T Consensus       183 I~eL~~~L~~~l~~  196 (423)
T 3qq5_A          183 FDDIGKTISEILPG  196 (423)
T ss_dssp             TTTHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999987743

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=6.1e-22  Score=160.91  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEE
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMITI-------------D--N----KPIK   56 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   56 (211)
                      |.....++|+++|+.++|||||+++|++..   +..+..+  |+...+....+..             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            455678999999999999999999998543   3333333  3333333333221             1  1    1378


Q ss_pred             EEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CC
Q 028237           57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VS  130 (211)
Q Consensus        57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~  130 (211)
                      +.+||+||++.|.......+..+|++|+|+|+++    +++.+.+..    +...  ...|+++++||+|+.+...  ..
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~  156 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEEN  156 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTH
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHH
Confidence            9999999999998888888889999999999985    444444332    2222  1358999999999976433  23


Q ss_pred             HHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          131 TEEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       131 ~~~~~~~~~~---~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .++++.++..   .+++++++||++|.|+++++++|.+.+
T Consensus       157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            4566666665   357899999999999999999987654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=2.8e-22  Score=157.18  Aligned_cols=125  Identities=14%  Similarity=0.180  Sum_probs=101.7

Q ss_pred             EEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC----------CHhhHHHHHHHHHHHHHhcC-CCCcE
Q 028237           46 RMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTI  114 (211)
Q Consensus        46 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~~-~~~p~  114 (211)
                      ..+.++  .+++.+||++|++.++.+|.+|+++++++|||||++          +..++.+...|+..+..... .+.|+
T Consensus       160 ~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i  237 (327)
T 3ohm_A          160 YPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV  237 (327)
T ss_dssp             EEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred             EEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence            334444  489999999999999999999999999999999665          56678888888877765544 68999


Q ss_pred             EEEEecCCCCCCC----------------CCCHHHHHHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          115 MLIGNKCDLAHRR----------------AVSTEEGEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       115 ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ++++||+|+.+++                ..+.+++..++.          ..++.+++|||+++.||.++|..+.+.+.
T Consensus       238 iL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          238 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  317 (327)
T ss_dssp             EEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence            9999999985432                457778877743          34567889999999999999999999998


Q ss_pred             HHHh
Q 028237          169 KKIQ  172 (211)
Q Consensus       169 ~~~~  172 (211)
                      +...
T Consensus       318 ~~~l  321 (327)
T 3ohm_A          318 QLNL  321 (327)
T ss_dssp             HTTC
T ss_pred             HHhH
Confidence            7643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=2.5e-21  Score=157.04  Aligned_cols=163  Identities=15%  Similarity=0.119  Sum_probs=113.7

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEE-------EE---------EE---CCEEEEEEEEeC
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------MI---------TI---DNKPIKLQIWDT   62 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~   62 (211)
                      .....++|+++|++++|||||+++|++.......... ..+....       .+         ..   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            3556799999999999999999999975433211100 0000000       00         00   112378999999


Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKE  140 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~  140 (211)
                      ||++.|......++..+|++|+|+|+++..++.....++..+....  ..|+++++||+|+.+....  ..+++..+...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998765566666666555442  3589999999998653211  11223333322


Q ss_pred             c---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          141 H---GLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       141 ~---~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .   +++++++||++|.|++++|+.|.+.+
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2   56899999999999999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=8.1e-22  Score=149.24  Aligned_cols=162  Identities=15%  Similarity=0.131  Sum_probs=107.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC--CceeEEEEEEEEECCEEEEEEEEeCCCcc-----------hhhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQIWDTAGQE-----------SFRS   70 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~   70 (211)
                      +..++|+|+|.+|+|||||+|+|++..+.....+  +++..+....+.+.+  ..+.+|||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4578999999999999999999999888665554  344445455555555  678999999943           3444


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhh--HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHHcC
Q 028237           71 ITRSYYRGAAGALLVYDITRRET--FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS------TEEGEQFAKEHG  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~  142 (211)
                      ....+++.+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.+.....      .+.++.+++..+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            55566778899999999875333  22222222222221  246999999999986543222      235777888888


Q ss_pred             CcEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 028237          143 LIFMEASAKTA-----QNVEEAFIKTAATIYK  169 (211)
Q Consensus       143 ~~~~~~sa~~g-----~~v~~~~~~l~~~~~~  169 (211)
                      ..++.++...+     .++.++|..+.+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888877644     5788888877666644

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=5.5e-22  Score=163.96  Aligned_cols=155  Identities=19%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR   77 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   77 (211)
                      ..++|+++|+.++|||||+++|++..       +..+..+..+.+.....+.+++  ..+.+|||||++.|......++.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            36899999999999999999999876       2223333333333333444454  78999999999999999999999


Q ss_pred             CCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHc----CCcEEEE
Q 028237           78 GAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEH----GLIFMEA  148 (211)
Q Consensus        78 ~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~  148 (211)
                      .+|++|+|+|+++   +++.+.+.    .+..   .+.|.++++||+|+.+...  ...+++..++...    +++++++
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            9999999999987   44444332    2222   2788999999999965211  1134455566555    5789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ||++|.|+++++++|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999988775

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=9.9e-22  Score=165.20  Aligned_cols=161  Identities=22%  Similarity=0.263  Sum_probs=114.1

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCC--CCCC-----C------CCCceeEEEE--EEEEE---CCEEEEEEEEeC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----H------DLTIGVEFGA--RMITI---DNKPIKLQIWDT   62 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~   62 (211)
                      |..+...+|+|+|+.++|||||+++|+...  ....     .      ....+++...  ..+.+   ++..+.++||||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            445678899999999999999999997631  1110     0      0011222221  11222   455689999999


Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG  142 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (211)
                      ||+..|...+..+++.+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+.+.+  ......++.+..+
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg  154 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG  154 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence            9999999999999999999999999998776666666654432    378999999999996532  2233455666666


Q ss_pred             C---cEEEEecCCCCCHHHHHHHHHHHH
Q 028237          143 L---IFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       143 ~---~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      +   +++++||++|.|+.++|++|.+.+
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            6   499999999999999999987755

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=2.2e-22  Score=159.76  Aligned_cols=120  Identities=16%  Similarity=0.246  Sum_probs=95.8

Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC----------CHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIGNKC  121 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~  121 (211)
                      ..+.+.+||++|++.+..+|..|+++++++|+|||++          +..+++....|+..+..... .+.|++|++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          77889999999888876543 689999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHH
Q 028237          122 DLAHRRA--V-------------------STEEGEQFAKE----------------HGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus       122 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |+.++..  +                   ..+++..++..                ..+.+++|||+++.||.++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   14556666433                123468999999999999999999


Q ss_pred             HHHHHHHh
Q 028237          165 ATIYKKIQ  172 (211)
Q Consensus       165 ~~~~~~~~  172 (211)
                      +.+.+...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=9.5e-22  Score=165.53  Aligned_cols=158  Identities=22%  Similarity=0.260  Sum_probs=109.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC--CC-----C------CCCCceeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP-----V------HDLTIGVEFGARMITI-----DNKPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~   65 (211)
                      +...+|+|+|+.++|||||+++|+....  ..     .      .....+.+.....+.+     ++..+.++||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            3567999999999999999999986321  10     0      0112233443333322     455789999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL--  143 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  143 (211)
                      ..|...+..+++.+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+.+.+  ......++.+..++  
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence            9999999999999999999999998666666666654432    378999999999996532  23334566666666  


Q ss_pred             -cEEEEecCCCCCHHHHHHHHHHHH
Q 028237          144 -IFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       144 -~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                       +++++||++|.|+.++|++|.+.+
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             ceEEEeecccCCCchhHHHHHhhcC
Confidence             499999999999999999888754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=4.9e-23  Score=168.66  Aligned_cols=173  Identities=17%  Similarity=0.131  Sum_probs=108.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc--------hhhhhhHHhhcC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE--------SFRSITRSYYRG   78 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   78 (211)
                      ++|+|+|.+|+|||||+|+|.+..+... ..+.+.+.......+...+..+.+|||||++        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999998776432 2333555444444555555789999999985        566777888999


Q ss_pred             CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 028237           79 AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNVE  157 (211)
Q Consensus        79 ~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v~  157 (211)
                      +|++|+|+|+.+..+...  .++..+..  ..++|+++++||+|+.+...    +..++. ..++ +++++||.+|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            999999999988655433  22222222  24789999999999864321    111222 3455 68999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCC
Q 028237          158 EAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPG  194 (211)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (211)
                      ++++++.+.+.+.    . ....+...++++-.|.|+
T Consensus       154 ~L~~~i~~~l~~~----~-~~~~~~~~~ki~lvG~~n  185 (436)
T 2hjg_A          154 DLLDAVAEHFKNI----P-ETKYNEEVIQFCLIGRPN  185 (436)
T ss_dssp             HHHHHHHHTGGGC----C-SSCCCTTCEEEEEECSTT
T ss_pred             HHHHHHHHhcCcc----c-cccccccCcEEEEEcCCC
Confidence            9999998876421    1 111223445666556553

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=3.1e-21  Score=154.03  Aligned_cols=160  Identities=24%  Similarity=0.140  Sum_probs=110.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHHhhcC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSYYRG   78 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~   78 (211)
                      .|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+++  ..+.+|||+|..         .+...+ ..+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            399999999999999999998876544444445556667777877  568999999962         233332 35788


Q ss_pred             CcEEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHc---CCcEEEEecCC
Q 028237           79 AAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEH---GLIFMEASAKT  152 (211)
Q Consensus        79 ~d~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~sa~~  152 (211)
                      +|++++|+|++++.  ..+.+..+...+......+.|+++|+||+|+.+.... ....+..++...   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  5555656666665554457899999999998653210 011233334444   34689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~~  170 (211)
                      +.|+++++++|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999998877654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=9e-22  Score=160.03  Aligned_cols=159  Identities=18%  Similarity=0.172  Sum_probs=110.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEEEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMITI-------------D--N----KPIKLQ   58 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   58 (211)
                      ....++|+++|+.++|||||+++|++..   +..+..+  |+...+....+..             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998543   2333333  3333333322211             1  1    137899


Q ss_pred             EEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHH
Q 028237           59 IWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTE  132 (211)
Q Consensus        59 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~  132 (211)
                      +||+||++.|.......+..+|++|+|+|+++    +++.+.+..    +....  ..|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence            99999999998888888889999999999985    444444332    22221  358999999999865321  1233


Q ss_pred             HHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          133 EGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       133 ~~~~~~~~---~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      ++..+...   .+++++++||++|.|+++++++|.+.+
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            44555543   357899999999999999999887644

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=8.4e-22  Score=156.99  Aligned_cols=124  Identities=18%  Similarity=0.224  Sum_probs=95.3

Q ss_pred             EEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEE
Q 028237           47 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIM  115 (211)
Q Consensus        47 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~i  115 (211)
                      .+.++  .+.+.+||++|++.+..+|.+++++++++|||||+++          ..++.+...|+..+..... .+.|+|
T Consensus       195 ~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI  272 (362)
T 1zcb_A          195 DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII  272 (362)
T ss_dssp             EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence            34444  4889999999999999999999999999999999999          6789998888888866543 689999


Q ss_pred             EEEecCCCCCCC----------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          116 LIGNKCDLAHRR----------------AVSTEEGEQFAK-----------EHGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       116 vv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      +++||+|+.++.                .+..+++..++.           ..++.+++|||+++.||.++|.++.+.+.
T Consensus       273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            999999985321                256777777662           34577899999999999999999999998


Q ss_pred             HHHh
Q 028237          169 KKIQ  172 (211)
Q Consensus       169 ~~~~  172 (211)
                      +...
T Consensus       353 ~~~l  356 (362)
T 1zcb_A          353 HDNL  356 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=3.4e-22  Score=165.57  Aligned_cols=153  Identities=15%  Similarity=0.113  Sum_probs=100.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----------------------------CCCCCceeEEEEEEEEECCEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDNKPI   55 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..+||+++|++++|||||+++|++.....                             ......+++.......+....+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            46899999999999999999997651110                             0011113333333344444567


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHH------HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LASWLEDARQHANANMTIMLIGNKCDLAHRRAV  129 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  129 (211)
                      .+.||||||++.|......++..+|++|+|+|+++......      ....+..+...  ...|++|++||+|+.+.++.
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence            89999999999999999999999999999999998643221      11222222221  13569999999999753322


Q ss_pred             CHHH----HHHHHHHc-----CCcEEEEecCCCCCHHHH
Q 028237          130 STEE----GEQFAKEH-----GLIFMEASAKTAQNVEEA  159 (211)
Q Consensus       130 ~~~~----~~~~~~~~-----~~~~~~~sa~~g~~v~~~  159 (211)
                      ..++    +..+....     +++++++||++|.|+.++
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            2232    33334333     357999999999999863

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.8e-22  Score=155.84  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=92.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-C-------CCCceeEEEEEEEEECCEEEEEEEEeCCCcc-------
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-H-------DLTIGVEFGARMITIDNKPIKLQIWDTAGQE-------   66 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------   66 (211)
                      .....++|+|+|.+|+|||||+|+|++...... +       .++.+.+.....+..++..+.+.+|||||..       
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            345679999999999999999999887655433 2       4455555555555555666799999999973       


Q ss_pred             hhhhhh-------HHhhc-------------CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           67 SFRSIT-------RSYYR-------------GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        67 ~~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .+..+.       ..|+.             .+|+++++++.......+.-..++..+..    ++|+++|+||+|+...
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence            233333       33333             27789998877652211111223333322    7999999999998542


Q ss_pred             CCC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          127 RAV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       127 ~~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      .+.  ....+.+.....+++++++|+.++.|+.+++.+|.+.
T Consensus       160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            211  1133455566778999999999999999999888764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=1.4e-21  Score=149.67  Aligned_cols=161  Identities=17%  Similarity=0.133  Sum_probs=107.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCC-ceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------h
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLT-IGVEFGARMITIDNKPIKLQIWDTAGQESFRS-----------I   71 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~   71 (211)
                      ..++|+|+|.+|+|||||+++|++.. +.....++ ++.......+.+.+  ..+.||||||+..+..           .
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999877 33333333 34444444455555  6799999999765422           2


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEe-cCCCCCCCCCCH-------HHHHHHHHHc
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGN-KCDLAHRRAVST-------EEGEQFAKEH  141 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~  141 (211)
                      ...+++.+|++|+|+|+++....  ...++..+.....  ...|.++++| |+|+.... ...       .++..+....
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHh
Confidence            23467899999999999862221  1122233333221  1457777777 99996421 111       2244466655


Q ss_pred             CCc---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          142 GLI---F--MEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       142 ~~~---~--~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      +..   +  +++||++|.|+.++|.+|.+.+...
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            532   2  7899999999999999999887653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=1.8e-22  Score=165.60  Aligned_cols=152  Identities=19%  Similarity=0.182  Sum_probs=103.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH--------Hhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITR--------SYY   76 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~   76 (211)
                      .++|+|+|.+|+|||||+|+|++.... ....++.+.++....+.+++  ..+.+|||||+..+...+.        .++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            578999999999999999999987543 34444445555555666776  5789999999876544333        357


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      +.+|++++|+|++++.+... ..++..+.     ..|+++|+||+|+.+.....  ..+.+.  .+.+++++||++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence            88999999999998765444 33444332     47999999999996644332  111111  3567999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIYK  169 (211)
Q Consensus       157 ~~~~~~l~~~~~~  169 (211)
                      +++|++|.+.+..
T Consensus       372 ~eL~~~i~~~~~~  384 (462)
T 3geh_A          372 DSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=2.5e-21  Score=158.48  Aligned_cols=156  Identities=23%  Similarity=0.187  Sum_probs=104.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCC-------------------------------CCCCCCCceeEEEEEEEEECC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMITIDN   52 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|++++|||||+++|++...                               ..+..+  +++.......+..
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~--GiTid~~~~~~~~   92 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK--GKTVEVGRAYFET   92 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhc--CceEEEeEEEEec
Confidence            3468999999999999999999965421                               111112  3444443444444


Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---HHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCC-
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR-  127 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~-  127 (211)
                      ....+.||||||++.|......++..+|++|+|+|+++...   ++...++...+......+.| +++++||+|+.+.. 
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~  172 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  172 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence            45799999999999999999999999999999999987532   11001111111111123677 99999999985321 


Q ss_pred             -----CCCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 028237          128 -----AVSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus       128 -----~~~~~~~~~~~~~~~------~~~~~~sa~~g~~v~~~~~  161 (211)
                           +...+++..+++..+      ++++++||++|.|+.++++
T Consensus       173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                 111233445555544      4699999999999999766

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=5.1e-22  Score=156.20  Aligned_cols=119  Identities=18%  Similarity=0.277  Sum_probs=97.8

Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECC----------CHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecC
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLASWLEDARQHAN-ANMTIMLIGNKC  121 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~  121 (211)
                      ..+.+.+||++|++.++.+|.+|+++++++|||||++          +..++.+...|+..+..... .+.|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            4589999999999999999999999999999999998          67788888888888766554 689999999999


Q ss_pred             CCCCCC---------------CCCHHHHHHHHHHc---------------------------CCcEEEEecCCCCCHHHH
Q 028237          122 DLAHRR---------------AVSTEEGEQFAKEH---------------------------GLIFMEASAKTAQNVEEA  159 (211)
Q Consensus       122 D~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~sa~~g~~v~~~  159 (211)
                      |+.++.               ..+.+++.+++...                           .+.++++||+++.||..+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            984311               12456665554332                           366889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          160 FIKTAATIYKKI  171 (211)
Q Consensus       160 ~~~l~~~~~~~~  171 (211)
                      |..+.+.+++.+
T Consensus       319 F~~v~~~Il~~l  330 (340)
T 4fid_A          319 FMLAVDVIMKNM  330 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999833

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=5.7e-22  Score=154.89  Aligned_cols=155  Identities=18%  Similarity=0.110  Sum_probs=104.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcc-h--------hhhhhHHh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQE-S--------FRSITRSY   75 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~~   75 (211)
                      ..+|+|+|++|+|||||+|+|++..+... ..+..+.......+..+  ..++.+|||||+. .        +......+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            45899999999999999999998876422 22221222212223333  4689999999987 2        22334556


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~  154 (211)
                      ++.+|++++|+|.++ -+  ....++....  ...+.|+++++||+|+.+......+.+..+.+..++ .++++||+++.
T Consensus        86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WT--PDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCCEEEEEEEEETTC-CC--HHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             HhcCCEEEEEEeCCC-CC--HHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            788999999999976 22  1222322221  224789999999999864212223444555555666 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATI  167 (211)
Q Consensus       155 ~v~~~~~~l~~~~  167 (211)
                      |++++++.+.+.+
T Consensus       161 ~v~~l~~~i~~~l  173 (301)
T 1ega_A          161 NVDTIAAIVRKHL  173 (301)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999988654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=5.2e-21  Score=156.80  Aligned_cols=160  Identities=19%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI------------   71 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------   71 (211)
                      ..++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++.  .+.+|||+|.......            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999987642 233333344444555667774  6789999997543221            


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH-HHH----HcCCcEE
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ-FAK----EHGLIFM  146 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~~  146 (211)
                      ...+++.+|++++|+|+.+..+.+.. .+...+..   .+.|+++++||+|+.+.+....++... +.+    ..+++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            13467789999999999876554432 22222222   379999999999997654433443332 222    2357899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++||++|.|++++|+.+.+.+.+.
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999877664

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.4e-22  Score=161.87  Aligned_cols=169  Identities=18%  Similarity=0.285  Sum_probs=94.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCC--------CCceeEEEEEEEEECCEEEEEEEEeCCCc-------ch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHD--------LTIGVEFGARMITIDNKPIKLQIWDTAGQ-------ES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   67 (211)
                      ...++|+|+|++|+|||||+++|++.... ..+.        ++.+.......+...+....+.+|||||+       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45789999999999999999998765432 2221        33344443333444566778999999998       66


Q ss_pred             hhhhhH-------HhhcCCcE-----------EEEEEECCC-HhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           68 FRSITR-------SYYRGAAG-----------ALLVYDITR-RETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        68 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      +..++.       .|++.+++           .++||++++ ..++..+. .++..+    ..+.|+|+|+||+|+....
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            666665       55544332           234444443 23333332 233322    3579999999999986543


Q ss_pred             CCCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 028237          128 AVST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD  177 (211)
Q Consensus       128 ~~~~--~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~~  177 (211)
                      ++..  +++..++..++++++++||+++.+ ++.|.++.+.+.+..+.+...
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv~  241 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVVG  241 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEECC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEeC
Confidence            3322  456667777789999999999999 999999999998887765433

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.1e-23  Score=174.96  Aligned_cols=159  Identities=20%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..++|+|+|++++|||||+++|.+..+.....++.+.++....+...+ ...+.||||||++.|..++..+++.+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            467899999999999999999998766555555555554443343322 3478999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHH---HHHc--CCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQF---AKEH--GLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~g~~v~~  158 (211)
                      |+|+++....+....    +......+.|+++++||+|+.+..... ..+...+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999998544333222    222223478999999999986532211 1111111   1122  24799999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          159 AFIKTAATIY  168 (211)
Q Consensus       159 ~~~~l~~~~~  168 (211)
                      +|++|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=1.9e-22  Score=165.05  Aligned_cols=160  Identities=20%  Similarity=0.259  Sum_probs=106.2

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCCC---------------------------CCCceeEEEEEEEEEC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---------------------------DLTIGVEFGARMITID   51 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~   51 (211)
                      |.....++|+++|+.++|||||+++|+..  .+....                           ....+++.......+.
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            55567899999999999999999999864  222110                           0011223322223344


Q ss_pred             CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc----CCCC-cEEEEEecCCCCCC
Q 028237           52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----NANM-TIMLIGNKCDLAHR  126 (211)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~----~~~~-p~ivv~nK~D~~~~  126 (211)
                      ...+++.||||||++.|...+..++..+|++|+|+|+++ .+++....|..+...+.    ..+. |+++++||+|+.+.
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            445789999999999999999999999999999999998 56664433222221111    1244 68999999999652


Q ss_pred             C------CCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 028237          127 R------AVSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus       127 ~------~~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~  161 (211)
                      .      +...++++.++...+     ++++++||++|.|+.+++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1      111345666776665     6799999999999987654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=2.3e-21  Score=155.26  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=107.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      +|+++|++++|||||+++|+        .  .+++.......+......+.+|||||++.|......+++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~--~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------K--KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------E--EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------h--CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998        1  1232222334444445689999999999998888888999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHcC---CcEEE--EecCC---CCC
Q 028237           88 ITRRETFNHLASWLEDARQHANANMTI-MLIGN-KCDLAHRRAVS--TEEGEQFAKEHG---LIFME--ASAKT---AQN  155 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~sa~~---g~~  155 (211)
                       ++ ........++..+...   +.|. ++++| |+|+ +.+...  .++++.+.+..+   +++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 3334444555444433   6777 88999 9998 432111  134555555443   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          156 VEEAFIKTAATIYKK  170 (211)
Q Consensus       156 v~~~~~~l~~~~~~~  170 (211)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999887653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=5.6e-21  Score=156.35  Aligned_cols=155  Identities=18%  Similarity=0.141  Sum_probs=105.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCC--C----------CCCC-------------------ceeEEEEEEEEECC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--V----------HDLT-------------------IGVEFGARMITIDN   52 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~--~----------~~~~-------------------~~~~~~~~~~~~~~   52 (211)
                      ...++|+++|+.++|||||+++|++.....  .          ...+                   .+++.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            346899999999999999999998654110  0          0011                   01222222222333


Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCCC--
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-TIMLIGNKCDLAHRRAV--  129 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~~~~--  129 (211)
                      ...++.+|||||++.|...+..++..+|++|+|+|+++....+ ...++..+...   +. |+++++||+|+.+....  
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence            4578999999999999998999999999999999998854222 23333333322   44 69999999999653211  


Q ss_pred             --CHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHHH
Q 028237          130 --STEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus       130 --~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~~~  162 (211)
                        ..+++..+++..+     ++++++||++|.|+.++|..
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence              1344566677777     67999999999999986543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=2.8e-21  Score=156.92  Aligned_cols=148  Identities=16%  Similarity=0.141  Sum_probs=104.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC--------CCCCC-------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQPV-------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF   68 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   68 (211)
                      ...++|+++|++++|||||+++|++.        .+...       .....+.+.......+......+.+|||||++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45789999999999999999999873        11110       0012233333344445445578999999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC--
Q 028237           69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VSTEEGEQFAKEHG--  142 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  142 (211)
                      ......++..+|++|+|+|+++.... ....++..+...   +.| +++++||+|+.+...   ...++++.++...+  
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            99899999999999999999875432 234444444332   678 889999999864211   11234556666665  


Q ss_pred             ---CcEEEEecCCCCC
Q 028237          143 ---LIFMEASAKTAQN  155 (211)
Q Consensus       143 ---~~~~~~sa~~g~~  155 (211)
                         ++++++||++|.|
T Consensus       165 ~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          165 GDEVPVIRGSALLALE  180 (405)
T ss_dssp             TTTSCEEECCHHHHHH
T ss_pred             ccCCCEEEccHHHhhh
Confidence               6799999999987

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.85  E-value=1.4e-20  Score=151.18  Aligned_cols=124  Identities=14%  Similarity=0.205  Sum_probs=99.6

Q ss_pred             EEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCC----------HhhHHHHHHHHHHHHHhcC-CCCcEE
Q 028237           47 MITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHAN-ANMTIM  115 (211)
Q Consensus        47 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~~-~~~p~i  115 (211)
                      .+.+++  +.+.+||++|++.+..+|..|+++++++|||||+++          ..+++.+..|+..+..... .+.|++
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            344444  889999999999999999999999999999999999          8899999999988876543 689999


Q ss_pred             EEEecCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCcEEEEecCC
Q 028237          116 LIGNKCDLAHRRA---V---------------------------STEEGEQFA-----KE--------HGLIFMEASAKT  152 (211)
Q Consensus       116 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~  152 (211)
                      |++||+|+.+...   .                           ..+++..|+     +.        .++.+++|||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999843211   1                           134555553     22        245678999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 028237          153 AQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~~~~  172 (211)
                      +.||.++|.++.+.+.+...
T Consensus       369 ~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          369 TENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHH
Confidence            99999999999998887654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=3.2e-21  Score=156.13  Aligned_cols=157  Identities=18%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC-------CCCC-------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPV-------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      .++|+++|+.++|||||+++|++..       +...       .....+.+.....+.+......+.+|||||++.|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            5899999999999999999998741       1100       0012234444344445444578999999999999988


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC-----
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VSTEEGEQFAKEHG-----  142 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-----  142 (211)
                      ...++..+|++|+|+|+++....+.. .++..+..   .+.| +++++||+|+.+...   ...++++.+++..+     
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            89999999999999999984332222 22233332   2788 689999999864211   11245566777665     


Q ss_pred             CcEEEEecCCCCC----------HHHHHHHHHHH
Q 028237          143 LIFMEASAKTAQN----------VEEAFIKTAAT  166 (211)
Q Consensus       143 ~~~~~~sa~~g~~----------v~~~~~~l~~~  166 (211)
                      ++++++||++|.|          +.++++.|.+.
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence            5899999999764          66666665543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=1.3e-20  Score=158.67  Aligned_cols=160  Identities=21%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC----CCceeEEEEEEE------------EECCEEEEEEEEeCCCcchh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMI------------TIDNKPIKLQIWDTAGQESF   68 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~   68 (211)
                      ..++|+|+|++++|||||+++|++..+.....    .+.+..+.....            .++.....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765433221    122222211000            00001125899999999999


Q ss_pred             hhhhHHhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-------------H-
Q 028237           69 RSITRSYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-------------T-  131 (211)
Q Consensus        69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~-  131 (211)
                      ..++..+++.+|++|+|+|+++   +++++.+..    +..   .+.|+++++||+|+.+.....             . 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999998   666554332    222   378999999999986421110             0 


Q ss_pred             --H-------HHHHHHHHcC---------------CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          132 --E-------EGEQFAKEHG---------------LIFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       132 --~-------~~~~~~~~~~---------------~~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                        +       +......+.+               ++++++||++|.|+.+++++|...+....
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence              0       1111112222               37999999999999999999998776543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=9.1e-21  Score=138.58  Aligned_cols=115  Identities=23%  Similarity=0.341  Sum_probs=88.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcC--
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG--   78 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   78 (211)
                      ...++|+|+|++|||||||+++|.+..+...   ..++.+.         ......+.+||+||++.+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            3468999999999999999999999876441   2222111         1134678999999999988878877766  


Q ss_pred             --CcEEEEEEECC-CHhhHHHHHHHHHHHHHhc----CCCCcEEEEEecCCCCCCC
Q 028237           79 --AAGALLVYDIT-RRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        79 --~d~~i~v~d~~-~~~~~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~  127 (211)
                        +|++|+|||++ ++.++..+..|+..+....    ..+.|+++|+||+|+.+..
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 8999988888877665442    3589999999999996543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=3.3e-21  Score=158.66  Aligned_cols=153  Identities=17%  Similarity=0.122  Sum_probs=102.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCC--------cchhhhhhHHhhc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG--------QESFRSITRSYYR   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~   77 (211)
                      ..+|+|+|.+|||||||+|+|++..+... ..+.+.+.......+......+.+|||||        ++.+......+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            46899999999999999999998776522 23346666555666666667899999999        6677778889999


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEecCCCCCH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQNV  156 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~g~~v  156 (211)
                      .+|++|+|+|..+..+...  .++..+..  ..++|+++++||+|+.+..    .....+. ..+. .++++||.+|.|+
T Consensus       102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv  172 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGL  172 (456)
T ss_dssp             HCSEEEEEEESSSCSCHHH--HHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTH
T ss_pred             hCCEEEEEEeCCCCCChHH--HHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccch
Confidence            9999999999876433222  22222222  2489999999999985421    1111121 2233 4789999999999


Q ss_pred             HHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIY  168 (211)
Q Consensus       157 ~~~~~~l~~~~~  168 (211)
                      .++++.+.+.+.
T Consensus       173 ~~L~~~i~~~l~  184 (456)
T 4dcu_A          173 GDLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHHTTGG
T ss_pred             HHHHHHHHhhcc
Confidence            999999987653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=1.4e-20  Score=156.75  Aligned_cols=115  Identities=20%  Similarity=0.155  Sum_probs=82.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC----------------------CCCCCceeEEEEEEEEECCEEEEEEEEeC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------------VHDLTIGVEFGARMITIDNKPIKLQIWDT   62 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   62 (211)
                      ...+|+|+|++|+|||||+++|+......                      +..+..+.......+.+.  .+.++||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence            46799999999999999999996211100                      000111222222333334  478999999


Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ||+..|...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999986655554433 33332   3789999999999854

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=1.5e-21  Score=160.99  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=90.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCC--CCC----------------------CC-----CCCceeEEEEEEEEECCEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP----------------------VH-----DLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~----------------------~~-----~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++|+++|+.++|||||+++|+...  +..                      ..     ....+.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            457899999999999999999997521  110                      00     0011222222212222224


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh---hHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC--
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA--  128 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--  128 (211)
                      .++.||||||++.|......++..+|++|+|+|+++..   +++...++...+......+.| ++|++||+|+.+...  
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            78999999999999998999999999999999999852   222112222222222223777 999999999954211  


Q ss_pred             ----CCHHHHHHHHHHc-------CCcEEEEecCCCCCHHHHH
Q 028237          129 ----VSTEEGEQFAKEH-------GLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus       129 ----~~~~~~~~~~~~~-------~~~~~~~sa~~g~~v~~~~  160 (211)
                          ...+++..++...       +++++++||++|.|+.++|
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                1123456666655       3569999999999998876

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.83  E-value=2.7e-22  Score=165.41  Aligned_cols=152  Identities=20%  Similarity=0.244  Sum_probs=107.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ...+|+++|+.++|||||+++|....+.....+..+.+.....+.++  ...+.||||||++.|..++..++..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            46799999999999999999998765544433333333322222233  3578999999999999999999999999999


Q ss_pred             EEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHH--HHHHHHHHcC--CcEEEEecCCCCC
Q 028237           85 VYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTE--EGEQFAKEHG--LIFMEASAKTAQN  155 (211)
Q Consensus        85 v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~--~~~~~~~~~~--~~~~~~sa~~g~~  155 (211)
                      |+|+++   +++.+.+    ..+..   .+.|+++++||+|+.+.+.  +...  +...++..++  ++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            999987   4443332    22222   3789999999999964211  1000  0001122233  6899999999999


Q ss_pred             HHHHHHHHHH
Q 028237          156 VEEAFIKTAA  165 (211)
Q Consensus       156 v~~~~~~l~~  165 (211)
                      ++++|++|..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999999875

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-20  Score=160.07  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=102.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-----------------------------CCceeEEEEEEEEECCEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------------------------LTIGVEFGARMITIDNKPI   55 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+|+|++++|||||+++|++........                             ...|++.......+....+
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~  245 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  245 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence            46899999999999999999998763322110                             0012233222233333457


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---HHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCCCC-
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVS-  130 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~~~-  130 (211)
                      .+.||||||++.|......+++.+|++|+|+|+++...   +....++...+......+ .|++|++||+|+.+..... 
T Consensus       246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~  325 (611)
T 3izq_1          246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF  325 (611)
T ss_dssp             EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred             eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence            89999999999999999999999999999999987421   000111222222112224 4599999999996532222 


Q ss_pred             ---HHHHHHHHHHcC-----CcEEEEecCCCCCHHHHH
Q 028237          131 ---TEEGEQFAKEHG-----LIFMEASAKTAQNVEEAF  160 (211)
Q Consensus       131 ---~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~~  160 (211)
                         .+++..+....+     ++++++||++|.|+.++.
T Consensus       326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence               233344444443     579999999999998773

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=5.7e-20  Score=136.12  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=99.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhhhH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITR   73 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   73 (211)
                      ....+|+|+|++|||||||+++|.+..+.....++.+.+.....+.+++   .+.+||+||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4467899999999999999999998764444445555555444444433   567999999742          333334


Q ss_pred             Hhh---cCCcEEEEEEECCCHhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--Cc
Q 028237           74 SYY---RGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHG--LI  144 (211)
Q Consensus        74 ~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~  144 (211)
                      .++   ..++++++++|+.++.+...  +..|+   ..   .+.|+++++||+|+....+  .....++.++...+  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            444   57889999999987654322  22222   11   3789999999999854211  11234455555554  46


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          145 FMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       145 ~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ++++|++++.++++++++|.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8899999999999999999886543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.81  E-value=1.7e-20  Score=146.30  Aligned_cols=166  Identities=15%  Similarity=0.160  Sum_probs=105.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCCc-----------------e---eEEE--------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTI-----------------G---VEFG--------------   44 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~-----------------~---~~~~--------------   44 (211)
                      ..++|+|+|.+|+|||||+|+|++..+.+..      .++.                 +   .+..              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4679999999999999999999998774221      1210                 0   0000              


Q ss_pred             ---------EEEEEEC-CEEEEEEEEeCCCcc-------------hhhhhhHHhhcCCcEEE-EEEECCCHhhHHHHHHH
Q 028237           45 ---------ARMITID-NKPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLASW  100 (211)
Q Consensus        45 ---------~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~  100 (211)
                               ...+.+. .....+.+|||||..             .+..+...|++.++.+| +|+|+++..+......+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                     0000000 012579999999963             45567778888888666 79999875443332233


Q ss_pred             HHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH--cC-CcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237          101 LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HG-LIFMEASAKTAQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       101 ~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~  173 (211)
                      +..+   ...+.|+++|+||+|+.+......+.++.....  .+ .+++++||++|.|++++|+.|.+....-...
T Consensus       185 ~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~  257 (299)
T 2aka_B          185 AKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSH  257 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHC
T ss_pred             HHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHhcC
Confidence            3333   234789999999999976443333322210001  12 3588999999999999999998854433333

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=2.3e-20  Score=153.55  Aligned_cols=156  Identities=19%  Similarity=0.183  Sum_probs=103.1

Q ss_pred             CC-cceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCC---------------C-------C-----CCceeEEEEEEEEE
Q 028237            1 MS-YAYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---------------H-------D-----LTIGVEFGARMITI   50 (211)
Q Consensus         1 ~~-~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---------------~-------~-----~~~~~~~~~~~~~~   50 (211)
                      |. ....++|+++|++++|||||+++|++.  .+...               .       .     ...+++.......+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            54 345789999999999999999999864  11110               0       0     00122222111233


Q ss_pred             CCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q 028237           51 DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDL  123 (211)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~  123 (211)
                      ......+.||||||++.|......++..+|++|+|+|+++...   ++   ....++..+..   .+.| +++++||+|+
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl  157 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence            3345789999999999999999999999999999999997531   11   12222222222   2565 8999999999


Q ss_pred             CCCCC----CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHH
Q 028237          124 AHRRA----VSTEEGEQFAKEHG-----LIFMEASAKTAQNVEEA  159 (211)
Q Consensus       124 ~~~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~~  159 (211)
                      .+...    ...+++..+++..+     ++++++||++|.|+.++
T Consensus       158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            63211    11234555666655     67999999999999755

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=3.9e-20  Score=163.05  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=105.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCC-------CCC-------CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQP-------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      ..++|+++|++++|||||+++|++..       +..       ....+.|+++....+.++.....+.||||||++.|..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~  374 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK  374 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence            46899999999999999999998631       100       1112334444433344555567899999999999998


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC----
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA---VSTEEGEQFAKEHG----  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  142 (211)
                      ....++..+|++|+|+|+++....+ ...++..+...   ++| ++|++||+|+.+...   ...+++..+....+    
T Consensus       375 ~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~  450 (1289)
T 3avx_A          375 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD  450 (1289)
T ss_dssp             HHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence            8899999999999999998753222 23333333332   678 789999999964211   11245566776665    


Q ss_pred             -CcEEEEecCCC--------CCHHHHHHHHHH
Q 028237          143 -LIFMEASAKTA--------QNVEEAFIKTAA  165 (211)
Q Consensus       143 -~~~~~~sa~~g--------~~v~~~~~~l~~  165 (211)
                       ++++++||++|        .|+.++|+.|.+
T Consensus       451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          451 DTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence             57999999999        346666665554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=5.9e-19  Score=150.98  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC----------------CceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------TIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      +...+|+|+|+.|+|||||+++|++.........                ..++++......+....+.+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4567999999999999999999985432211100                012233333333333358899999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      |......+++.+|++++|+|+++...... ..++..+..   .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            99999999999999999999876433222 234444433   378999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=4.4e-19  Score=143.48  Aligned_cols=160  Identities=15%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch----hhhhhHHh---hcCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----FRSITRSY---YRGA   79 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~   79 (211)
                      -.|+|+|++|||||||++.|++........+..+.......+.+++ ...+.+||+||...    +..+...+   .+.+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999998754322222222333333344443 35788999999742    22222222   4579


Q ss_pred             cEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           80 AGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      +.+++++|++ ...+..+..+..++..+..  ...|.++++||+|+...  ...+.+.......+++++.+||+++.|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 5556666666666655432  36899999999998653  22344455555667899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          158 EAFIKTAATIYKK  170 (211)
Q Consensus       158 ~~~~~l~~~~~~~  170 (211)
                      +++++|.+.+.+.
T Consensus       314 eL~~~i~~~l~~~  326 (416)
T 1udx_A          314 ALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=1.4e-18  Score=133.23  Aligned_cols=125  Identities=14%  Similarity=0.074  Sum_probs=85.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhc------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR------   77 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   77 (211)
                      ..++|+|+|.+|+|||||+|+|++..... ...+..+.......+..++  ..+.+|||||+..+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            46899999999999999999999887532 2223323444444455555  68999999999877655444443      


Q ss_pred             ---CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCCCCCCH
Q 028237           78 ---GAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVST  131 (211)
Q Consensus        78 ---~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~~  131 (211)
                         .+|++++|++++..........|+..+......  ..|+++|+||+|+.+.+....
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  171 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY  171 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence               789999999998654222223566666554332  359999999999864444443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=3.4e-19  Score=142.54  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=106.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEE---------------------------------------
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---------------------------------------   46 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------   46 (211)
                      ..+|+|+|.+|||||||+|+|++..+.+.....++......                                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            45999999999999999999999876433332221110000                                       


Q ss_pred             -------------EEEE-CCEEEEEEEEeCCCcchh-------------hhhhHHhhcCCcEEEEEEECCCHhhHHHHHH
Q 028237           47 -------------MITI-DNKPIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLAS   99 (211)
Q Consensus        47 -------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~   99 (211)
                                   .+.+ ......+.+|||||...+             ..+...|++.+|++|+|++..+.+...  ..
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                         0000 011246899999997765             667888999999999999875433211  23


Q ss_pred             HHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       100 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |+..+......+.|+++|+||+|+.+......+..+.+....+.+++++++..+.++.+.+..+...
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~  258 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR  258 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence            4444444444578999999999997655554554444445567789999999988887766554433

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.77  E-value=5.7e-20  Score=155.21  Aligned_cols=147  Identities=22%  Similarity=0.199  Sum_probs=81.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-----------------------------CCCCceeEEEEEEEEECCEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   54 (211)
                      ...++|+|+|++++|||||+++|++......                             .....|++.......+....
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            3468999999999999999999964210000                             00012333333334444445


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHANANMT-IMLIGNKCDL  123 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~  123 (211)
                      ..+.||||||++.|......++..+|++|+|+|+++.          .+.+.    +..+..   .+.| +||++||+|+
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~----l~~~~~---lgip~iIvviNKiDl  327 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH----AYLLRA---LGISEIVVSVNKLDL  327 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH----HHHHHH---SSCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH----HHHHHH---cCCCeEEEEEecccc
Confidence            7899999999999998888899999999999999853          22222    222222   2565 9999999998


Q ss_pred             CCCCCCC----HHHHHHHH-HHcCC-----cEEEEecCCCCCHH
Q 028237          124 AHRRAVS----TEEGEQFA-KEHGL-----IFMEASAKTAQNVE  157 (211)
Q Consensus       124 ~~~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~g~~v~  157 (211)
                      .+.....    ..++..+. ...++     +++++||++|.|+.
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            6522111    22334444 44454     69999999999998

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=8.5e-20  Score=142.49  Aligned_cols=165  Identities=16%  Similarity=0.236  Sum_probs=88.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC-CCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEeCCCc-------ch
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK-RFQPVH--------DLTIGVEFGARMITIDNKPIKLQIWDTAGQ-------ES   67 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   67 (211)
                      +..++|+|+|++|+|||||+++|.+. .++...        .++.............+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 443322        111111111112222344578999999998       55


Q ss_pred             hhhhhH-------HhhcC-------------CcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           68 FRSITR-------SYYRG-------------AAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        68 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      +..+..       .+++.             +++++++.+++.. +++.+.  ...+.... .+.|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence            555544       44432             2345555554321 122221  12222222 367999999999986533


Q ss_pred             CC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 028237          128 AV--STEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~  173 (211)
                      +.  ..+++.++++.++++++++||+++ +++++|..+.+.+.+..+.
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~  218 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF  218 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence            22  235678888999999999999999 9999999999988765543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=3.7e-18  Score=142.30  Aligned_cols=118  Identities=17%  Similarity=0.147  Sum_probs=79.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEeCC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMITIDNKPIKLQIWDTA   63 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   63 (211)
                      +...+|+|+|++|+|||||+++|+.......                    .....+.+.......+....+.+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            3478999999999999999999986421110                    00111222222222333334789999999


Q ss_pred             CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      |+..|......+++.+|++|+|+|+++..... ...++..+   ...+.|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            99999988889999999999999998753222 12222222   224899999999999854

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=3.6e-18  Score=146.64  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=83.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCC--------CC----------CCCCceeEEEEEEEEECCEEEEEEEEeCCC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PV----------HDLTIGVEFGARMITIDNKPIKLQIWDTAG   64 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   64 (211)
                      .+...+|+|+|+.|+|||||+++|+.....        ..          .....+.......+.+.  .+.+++|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence            356789999999999999999999842110        00          01111222222233333  47899999999


Q ss_pred             cchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +..|...+..+++.+|++|+|+|+++.........|.. +..   .+.|+++++||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99999999999999999999999998766665555443 333   3799999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=3.5e-18  Score=131.50  Aligned_cols=126  Identities=14%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhH-------Hh--
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITR-------SY--   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--   75 (211)
                      ..++|+|+|.+|+|||||+|+|++..+...... .+.+.....+.+....+.+.+|||||+..+..+..       .+  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            468999999999999999999998775322211 12222222233333347899999999876543222       22  


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCCCCCCH
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVST  131 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~~  131 (211)
                      ...+|++|+|+|++..........|+..+......  ..|+++|+||+|+...+....
T Consensus       117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  174 (270)
T ss_dssp             TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence            34689999999987532111223566666544322  269999999999865443333

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=6.1e-18  Score=145.34  Aligned_cols=163  Identities=15%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEE-------EEEEEE--------------------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFG-------ARMITI--------------------------   50 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~--------------------------   50 (211)
                      ..++|+|+|.+|+|||||+|+|++..... ...+++.....       ..+..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999877543 33333210000       001111                          


Q ss_pred             --------------------CCEE--EEEEEEeCCCcch---hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHH
Q 028237           51 --------------------DNKP--IKLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR  105 (211)
Q Consensus        51 --------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~  105 (211)
                                          ....  ..+.||||||...   .......+++.+|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                1000  3589999999765   34566788899999999999998877666555543332


Q ss_pred             HhcCCCCcEEEEEecCCCCCCCCCCH---H-------HHHH-----HHHH--------cCCcEEEEecC-----------
Q 028237          106 QHANANMTIMLIGNKCDLAHRRAVST---E-------EGEQ-----FAKE--------HGLIFMEASAK-----------  151 (211)
Q Consensus       106 ~~~~~~~p~ivv~nK~D~~~~~~~~~---~-------~~~~-----~~~~--------~~~~~~~~sa~-----------  151 (211)
                         ..+.|+++|+||+|+........   +       .+..     +...        ...+++++||+           
T Consensus       228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               23678999999999864321111   1       1111     1111        12369999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHH
Q 028237          152 ---TAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       152 ---~g~~v~~~~~~l~~~~~~~  170 (211)
                         ++.|+.+++..|.+.+...
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHHHh
Confidence               9999999999998877543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=3.5e-18  Score=134.20  Aligned_cols=112  Identities=11%  Similarity=0.119  Sum_probs=69.4

Q ss_pred             EEEEEEeCCCcch-------------hhhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 028237           55 IKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNK  120 (211)
Q Consensus        55 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK  120 (211)
                      ..+.+|||||...             +......++..+|++|+|+|..+.. .......+...   ....+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~---~~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE---VDPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH---HCSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHH---hCCCCCcEEEEEcC
Confidence            5799999999753             4567778899999999999974322 11111122222   22347899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCcEEEEecC---C---CCCHHHHHHHHHHHHHH
Q 028237          121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAK---T---AQNVEEAFIKTAATIYK  169 (211)
Q Consensus       121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---g~~v~~~~~~l~~~~~~  169 (211)
                      +|+.+......+.+.......+..++++++.   +   +.|+.+++..+.+.+..
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            9997644322332221101112456665554   4   78889998887776643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=2.2e-18  Score=139.08  Aligned_cols=85  Identities=20%  Similarity=0.183  Sum_probs=47.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--I-------------------TIDN-KPIKLQIWDTAG   64 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G   64 (211)
                      ++|+|+|.+|+|||||+|+|++........+.++.+.....  +                   .+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987743333332222222221  1                   1222 257899999999


Q ss_pred             cch----hhhhhH---HhhcCCcEEEEEEECCCH
Q 028237           65 QES----FRSITR---SYYRGAAGALLVYDITRR   91 (211)
Q Consensus        65 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   91 (211)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            754    233333   346889999999999875

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.73  E-value=1e-16  Score=137.84  Aligned_cols=118  Identities=18%  Similarity=0.157  Sum_probs=82.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCC--CCCC-----------CC---CCceeEEEE--EEEEEC-----CEEEEEEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----------HD---LTIGVEFGA--RMITID-----NKPIKLQIW   60 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----------~~---~~~~~~~~~--~~~~~~-----~~~~~~~i~   60 (211)
                      +...+|+|+|+.++|||||+++|+...  +...           ..   ...+.+...  ..+.+.     +..+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            567899999999999999999997531  1100           00   011222222  222222     234899999


Q ss_pred             eCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ||||+..|...+..+++.+|++|+|+|+++.........| ..+..   .+.|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            9999999999999999999999999999986544433333 22222   3789999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=1e-18  Score=136.42  Aligned_cols=133  Identities=16%  Similarity=0.117  Sum_probs=108.7

Q ss_pred             HHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHh-hHHHHH
Q 028237           21 CLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLA   98 (211)
Q Consensus        21 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~   98 (211)
                      +|++++..+.|. ..+.+|++..+. ..  +.... ++.+||+  ++++..++..|++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888888 888899885554 22  22222 7899999  8999999999999999999999999987 688888


Q ss_pred             HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHH
Q 028237           99 SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        99 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      .|+..+..   .+.|+++|+||+|+.+...  .++.+.+++.++  ++++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            89887654   3799999999999965332  245677777777  8999999999999999998875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=9.8e-17  Score=137.83  Aligned_cols=116  Identities=20%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC--CCCCC---C-------------CCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---H-------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      +...+|+|+|++|+|||||+++|+..  .+...   .             .+.++.......+.+.  .+.++||||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence            45789999999999999999999852  21100   0             0111122222223334  478999999999


Q ss_pred             chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ..|...+..+++.+|++|+|+|+++..+......|. .+..   .+.|+++++||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            999988999999999999999999866655544443 3333   3789999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.72  E-value=7.4e-18  Score=136.43  Aligned_cols=159  Identities=17%  Similarity=0.224  Sum_probs=79.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh------
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------   69 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------   69 (211)
                      +..++|+|+|++|+|||||++.|.+..+....        .++.........+...+....+.+||++|...+.      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            45688999999999999999999987663211        1111211111111223334578999999976431      


Q ss_pred             -hh------------------hHHhhcCCcEEEEEEECCCH-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           70 -SI------------------TRSYYRGAAGALLVYDITRR-ETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        70 -~~------------------~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                       .+                  ...++.++++.+++|..... .+++... .|+..+.    .+.|+|+|+||+|+....+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence             11                  12234445544444443321 1222222 3444442    3789999999999865433


Q ss_pred             CCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          129 VST--EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      +..  ..+..++..++++++++|+.++.++.++|..+.+.
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            332  56677788889999999999999999887776653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.68  E-value=2.2e-17  Score=123.14  Aligned_cols=155  Identities=17%  Similarity=0.123  Sum_probs=95.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEE------------EEEEEEEC------------------CEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------GARMITID------------------NKP   54 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~~   54 (211)
                      ...+|+|+|.+|+|||||+++|............+..++            ....+.++                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            357899999999999999999986532111000000000            00011111                  123


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG  134 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (211)
                      ..+.+|||+|.....   ..+....+.+|+|+|+.+....  ...+...   .   +.|.++++||+|+.+......+++
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            568899999851110   1122356789999998764321  1111111   1   578999999999864333456666


Q ss_pred             HHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          135 EQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       135 ~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ...+...  +++++++||++|.|+.++|++|.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            6666554  46899999999999999999999877554

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.68  E-value=1.6e-17  Score=132.47  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=95.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC----cee----------------------EE----------------
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGV----------------------EF----------------   43 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~----~~~----------------------~~----------------   43 (211)
                      .++|+|+|.+|+|||||+|+|++..+.+.....    .+.                      ++                
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            579999999999999999999998764222111    010                      00                


Q ss_pred             -------EEEEEEEC-CEEEEEEEEeCCCcc-------------hhhhhhHHhhcCCc-EEEEEEECCCHhhHHHHHHHH
Q 028237           44 -------GARMITID-NKPIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLASWL  101 (211)
Q Consensus        44 -------~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~  101 (211)
                             ....+.+. .....+.||||||..             .+..+...|+...+ ++++|++.+.......   +.
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~~  187 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---AL  187 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---HH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---HH
Confidence                   00001111 113579999999953             34556777776666 5555666654322111   22


Q ss_pred             HHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHH--HHHHcC-CcEEEEecCCCCCHHHHHHHHHHH
Q 028237          102 EDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQ--FAKEHG-LIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       102 ~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ..+......+.|+++|+||+|+.+......+..+.  +....+ .+++++||+++.|+.++++.+.+.
T Consensus       188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          188 KVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            22333334589999999999997543322222110  000122 247789999999999999998773

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=9.9e-16  Score=121.51  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchhh--
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESFR--   69 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~--   69 (211)
                      ++|+|+|.+|+|||||+|+|++..+.....+.++.......+.+.+.               +..+.+||+||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999997754333332233322223444442               2579999999987653  


Q ss_pred             --hhh---HHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHH------------------------------
Q 028237           70 --SIT---RSYYRGAAGALLVYDITRR----------ETFNHLASWLEDA------------------------------  104 (211)
Q Consensus        70 --~~~---~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l------------------------------  104 (211)
                        .+.   ..+++.+|++++|+|+++.          +.++++..+..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              232   3357899999999999752          2222222111111                              


Q ss_pred             ----------HH-------------------h-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 028237          105 ----------RQ-------------------H-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT  152 (211)
Q Consensus       105 ----------~~-------------------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  152 (211)
                                ..                   + ....+|+++++|+.|..-......+.++.++...+++++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                      10                   0 013599999999999632112235667788888899999999763

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.65  E-value=3.6e-15  Score=124.88  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC----------------------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF----------------------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTA   63 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   63 (211)
                      .=+|+|+|+.++|||||..+|+...-                      ..+..+  |+++....+.+.++++.++|+|||
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreR--GITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERER--GISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHC--CCcEeeceEEEEECCEEEEEEeCC
Confidence            45899999999999999999863211                      111122  333333333334445899999999


Q ss_pred             CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      |+..|.......++-+|++|+|+|+...-..+....| ..+..+   +.|.++++||+|...
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence            9999999999999999999999999874433333333 344443   899999999999754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=9.1e-16  Score=134.33  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=84.7

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCC------------CCC----CCCC--CceeEEEEEEEE------------ECC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKR------------FQP----VHDL--TIGVEFGARMIT------------IDN   52 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~------------~~~----~~~~--~~~~~~~~~~~~------------~~~   52 (211)
                      .+...+|+|+|+.++|||||+++|+...            +..    +..+  |+........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3557899999999999999999998641            100    0111  111111111222            234


Q ss_pred             EEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      ..+.++||||||+..|...+..+++.+|++|+|+|+++..+.+....|.... .   .+.|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            4789999999999999999999999999999999999877666655554332 2   378999999999985

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.62  E-value=6.1e-17  Score=121.14  Aligned_cols=154  Identities=17%  Similarity=0.177  Sum_probs=91.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEE------------EEEEEEC-CEE-----------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMITID-NKP-----------------   54 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   54 (211)
                      ..++|+|+|.+|||||||+++|....+.....++++.++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            3689999999999999999999987655433333333322            1122221 111                 


Q ss_pred             --EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237           55 --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE  132 (211)
Q Consensus        55 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (211)
                        ..+.++|++|.-..   ...+-...+..+.++|.........  .....      .+.|.++++||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence              13444455442100   0011112334556666432111000  00011      15788999999998654345667


Q ss_pred             HHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          133 EGEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       133 ~~~~~~~~~--~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ++..++...  +++++++||++|.|++++|++|.+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            777777654  5789999999999999999999887653

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.62  E-value=2.5e-15  Score=119.86  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC-------------------EEEEEEEEeCCCcch
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-------------------KPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   67 (211)
                      ++|+|+|.+|+|||||+|+|++........+..+.......+.+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998653222222212222222223321                   246799999999765


Q ss_pred             hh----hh---hHHhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHH--------------------------
Q 028237           68 FR----SI---TRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDA--------------------------  104 (211)
Q Consensus        68 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~l--------------------------  104 (211)
                      ..    .+   ...+++.+|++++|+|+.+.          +..+++..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42    22   23357899999999999751          1122111100000                          


Q ss_pred             -------------HH-------------------hc-CCCCcEEEEEecCCC--CCC-CCCCHHHHHHHHHHcCCcEEEE
Q 028237          105 -------------RQ-------------------HA-NANMTIMLIGNKCDL--AHR-RAVSTEEGEQFAKEHGLIFMEA  148 (211)
Q Consensus       105 -------------~~-------------------~~-~~~~p~ivv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                                   ..                   +. -..+|+++++|+.|.  .+. .....+.++.+++..+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                         00                   00 124899999999984  221 1233567788888889999999


Q ss_pred             ecCCCCCHHHHHHH
Q 028237          149 SAKTAQNVEEAFIK  162 (211)
Q Consensus       149 sa~~g~~v~~~~~~  162 (211)
                      ||+...++.+++..
T Consensus       242 SAk~E~el~eL~~~  255 (368)
T 2dby_A          242 SARLEAELAELSGE  255 (368)
T ss_dssp             CHHHHHHHHTSCHH
T ss_pred             echhHHHHHHhchH
Confidence            99987666655543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.61  E-value=2.5e-16  Score=125.64  Aligned_cols=106  Identities=10%  Similarity=0.047  Sum_probs=70.4

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--H
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T  131 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~  131 (211)
                      .+.+.||||||....   .......+|++|+|+|....+....+..        .-...|.++|+||+|+.+.....  .
T Consensus       171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~  239 (355)
T 3p32_A          171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAA  239 (355)
T ss_dssp             TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHH
Confidence            367899999995432   2334588999999999876543322111        01246899999999985421110  1


Q ss_pred             HHHHHHHH-------HcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          132 EEGEQFAK-------EHGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       132 ~~~~~~~~-------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      .+......       .++.+++++||++|.|+++++++|.+.+...
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            11222111       1257899999999999999999999887664

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.60  E-value=1.5e-15  Score=127.31  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=80.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCC---CCCCCCceeEEEEEEEEECCE-----------------------E---
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMITIDNK-----------------------P---   54 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~---   54 (211)
                      +..++|+|+|.+|+|||||+|+|++..+.   ....+++....   .+.....                       .   
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~---~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV---AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE---EEECCSSSEEECCC------------------CC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE---EEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            45689999999999999999999998764   33333321111   0100000                       0   


Q ss_pred             --------------EEEEEEeCCCcch-----------hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC
Q 028237           55 --------------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN  109 (211)
Q Consensus        55 --------------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~  109 (211)
                                    ..+.||||||...           +......++..+|++|+|+|+++....+....++..+.   .
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~  216 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---G  216 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---T
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---h
Confidence                          2589999999764           55677788999999999999987544444445554443   2


Q ss_pred             CCCcEEEEEecCCCCC
Q 028237          110 ANMTIMLIGNKCDLAH  125 (211)
Q Consensus       110 ~~~p~ivv~nK~D~~~  125 (211)
                      .+.|+++|+||+|+.+
T Consensus       217 ~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             CGGGEEEEEECGGGSC
T ss_pred             cCCCEEEEEECCCccC
Confidence            3689999999999864

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.58  E-value=8.1e-14  Score=111.14  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=100.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHhhc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYR   77 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~   77 (211)
                      ...+|+|+|.||+|||||+|+|++........+.++.+.....+.+.+  .+++++|+||.....       ......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999999877666667767777777788877  678899999963221       11223467


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCC--------CCCCCHHHHHHHHHHcCCcEEE
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH--------RRAVSTEEGEQFAKEHGLIFME  147 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      .+|++++|+|+.+|..  ....+..++.....  .+.|.++++||.|...        ......+++..+...+.+..-+
T Consensus       149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             hcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            8999999999998753  22223333333221  4678899999999732        1234566666666665543222


Q ss_pred             EecCCCCCHHHHH
Q 028237          148 ASAKTAQNVEEAF  160 (211)
Q Consensus       148 ~sa~~g~~v~~~~  160 (211)
                      +-...+...+++.
T Consensus       227 v~~~~nv~eddl~  239 (376)
T 4a9a_A          227 IAFRCDATVDDLI  239 (376)
T ss_dssp             EEECSCCCHHHHH
T ss_pred             eeecccCCHHHHH
Confidence            2223334444443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.57  E-value=9.9e-16  Score=121.80  Aligned_cols=104  Identities=10%  Similarity=0.027  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE  133 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (211)
                      .+.+.++||+|....   .......+|++++|+|+.++...+.+..   .+     ...|.++++||+|+.+.... ...
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI  233 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence            357889999996422   2334678999999999987543221111   11     24688999999998531100 011


Q ss_pred             HHHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          134 GEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       134 ~~~~~~----------~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ...+..          .++.+++.+||++|.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            122211          224578999999999999999999887644

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.56  E-value=2.2e-15  Score=128.39  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=83.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCC--------CCC--C------CCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PVH--D------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~--------~~~--~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      +-||+|+|+.++|||||..+|+...-.        ...  .      ..-|++.....+.+..+++.++|+|||||..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            358999999999999999998632110        000  0      001444444445555667899999999999999


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ......++-+|++|+|+|+...-..+. ...+..+..+   +.|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999987433222 2333444444   789999999999754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.53  E-value=7.6e-14  Score=106.56  Aligned_cols=110  Identities=15%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCcchhhhhhH------HhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      +.+.||||||.........      ..+.. +++++++|...   +..+.....+..  ......+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL--LIDLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH--HHHHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH--HHhcccCCCeEEEEecccccc
Confidence            5789999999876543322      24455 88888888753   222222111111  111113689999999999864


Q ss_pred             CCCCCHHHHHHH----------------------------HHHcC--CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          126 RRAVSTEEGEQF----------------------------AKEHG--LIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       126 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ...  .++++.+                            ++..+  ++++++||+++.|+++++++|.+.+..
T Consensus       186 ~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            321  1111111                            23333  479999999999999999999877643

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.51  E-value=4.4e-13  Score=115.69  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCC--------CC----------CCCCCCceeEEEEEEEEECC-----EEEEEEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKR--------FQ----------PVHDLTIGVEFGARMITIDN-----KPIKLQIW   60 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   60 (211)
                      +.+=+|+|+|+.++|||||..+|+...        ..          .+..+.+++.-....+.+.+     .++.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            445699999999999999999986321        10          11122222222233334432     36899999


Q ss_pred             eCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      |||||..|.......++-+|++|+|+|+...-..+.... +.....+   +.|.++++||+|..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHHH---TCCEEEEEECSSST
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHHc---CCCeEEEEcccccc
Confidence            999999999999999999999999999987433333223 3333333   89999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.51  E-value=1.7e-14  Score=114.38  Aligned_cols=104  Identities=12%  Similarity=0.016  Sum_probs=65.8

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--H
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--T  131 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~  131 (211)
                      .+.+.||||||.......   ....+|++++|+|.......+.+..   ..     .+.|.++|+||+|+.+.....  .
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            367999999997654432   4689999999999976543211111   00     145789999999985421110  0


Q ss_pred             HHHHHHHHHc-------CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          132 EEGEQFAKEH-------GLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       132 ~~~~~~~~~~-------~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ++........       ..+++++||++|.|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1222222221       356899999999999999999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=5.3e-14  Score=120.80  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=96.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeE-----------------------------------------
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVE-----------------------------------------   42 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~-----------------------------------------   42 (211)
                      ...+|+|+|..++|||||+|.|++..+- ......+...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            3579999999999999999999997762 2221111000                                         


Q ss_pred             ---------EEEEEEEECCEEEEEEEEeCCCcch-------------hhhhhHHhh-cCCcEEEEEEECCCHhhHHHHHH
Q 028237           43 ---------FGARMITIDNKPIKLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLAS   99 (211)
Q Consensus        43 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~   99 (211)
                               .....+...+ ...+.|+||||...             ...+...|+ ..+|++++|+|++..........
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                     0001111111 23578999999543             233444454 57899999999987433222222


Q ss_pred             HHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----cC-CcEEEEecCCCCCHHHHHHHHHHH
Q 028237          100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HG-LIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       100 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ++..   ....+.|+++|+||+|+.+....... +.. .+.    .+ .+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~---L~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKE---VDPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHH---HCTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHH---HHhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            2222   23347899999999999765433222 111 111    12 257789999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.41  E-value=3.7e-13  Score=104.96  Aligned_cols=97  Identities=18%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             cchhhhhhHHhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHHcC
Q 028237           65 QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TEEGEQFAKEHG  142 (211)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  142 (211)
                      ++++..+.+.+++++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .++...+++..+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6677778888999999999999999986 78888888876654   389999999999996532211 344566677778


Q ss_pred             CcEEEEecCCCCCHHHHHHHHH
Q 028237          143 LIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus       143 ~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ++++++||++|.|++++|..+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=1.4e-11  Score=98.87  Aligned_cols=85  Identities=20%  Similarity=0.237  Sum_probs=62.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcch--
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQES--   67 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--   67 (211)
                      ..+|+|+|++|+|||||+|.|++... .....++++.......+.+.+.               ...+.+||+||...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            46899999999999999999999776 5555555555555556666542               14689999999542  


Q ss_pred             -----hhhhhHHhhcCCcEEEEEEECCC
Q 028237           68 -----FRSITRSYYRGAAGALLVYDITR   90 (211)
Q Consensus        68 -----~~~~~~~~~~~~d~~i~v~d~~~   90 (211)
                           ........++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 22234455788999999999863

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.38  E-value=1.5e-12  Score=102.99  Aligned_cols=104  Identities=8%  Similarity=0.026  Sum_probs=63.5

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE  133 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (211)
                      .+.+.|+||+|.....   ......+|.+++|+|....+..+.+...   +.     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            4678999999975432   1235789999999998654322111111   11     23557778999974311111111


Q ss_pred             HHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          134 GEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       134 ~~~~~~~----------~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      .+++...          ++.+++.+||+++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2233221          2457899999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.37  E-value=4.2e-13  Score=97.59  Aligned_cols=103  Identities=6%  Similarity=-0.019  Sum_probs=69.4

Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHH----HHhcC-CCCcEEEEEecC-CCCCCCCCCHHHHHH
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA----RQHAN-ANMTIMLIGNKC-DLAHRRAVSTEEGEQ  136 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l----~~~~~-~~~p~ivv~nK~-D~~~~~~~~~~~~~~  136 (211)
                      +|++..+.+|++||.++|++|||+|.+|.+..+ ....+..+    ..... .+.|++|++||. |+++  .++..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            378889999999999999999999999876543 22222222    22211 478999999995 6743  456666544


Q ss_pred             HHHH----cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 028237          137 FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       137 ~~~~----~~~~~~~~sa~~g~~v~~~~~~l~~~~~  168 (211)
                      ....    +.+.++.|||.+|+|+.+.++||.+.+.
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            3322    3466999999999999999999987553

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.36  E-value=7.5e-13  Score=106.02  Aligned_cols=86  Identities=17%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESFRS   70 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~   70 (211)
                      .++|+|+|.+|+|||||+|+|++..+.....++++.......+.+.+.               ...+.+||+||......
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            578999999999999999999988765555555555555555555442               23599999999776443


Q ss_pred             -------hhHHhhcCCcEEEEEEECCCH
Q 028237           71 -------ITRSYYRGAAGALLVYDITRR   91 (211)
Q Consensus        71 -------~~~~~~~~~d~~i~v~d~~~~   91 (211)
                             .+..+++.+|++++|+|+.+.
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC---
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence                   456678999999999998753

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.26  E-value=1.4e-11  Score=93.92  Aligned_cols=106  Identities=6%  Similarity=-0.009  Sum_probs=74.8

Q ss_pred             CCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHH---HHHHHHHHHHHhc-CCCCcEEEEEec-CCCCCCCCCCHHHHHH
Q 028237           62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFN---HLASWLEDARQHA-NANMTIMLIGNK-CDLAHRRAVSTEEGEQ  136 (211)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~l~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~  136 (211)
                      .+|++..+.+|++||+++|++|||+|.+|.+.++   ++.++...+.... -.+.|++|++|| .|+++  .++..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4578889999999999999999999999977544   2222212232221 248999999997 58754  456665544


Q ss_pred             HHHH----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          137 FAKE----HGLIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       137 ~~~~----~~~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                      ....    +.+.++.+||.+|+|+.+.++||.+.+..
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            3322    34569999999999999999999987643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.07  E-value=3.9e-10  Score=90.14  Aligned_cols=96  Identities=25%  Similarity=0.331  Sum_probs=74.3

Q ss_pred             CcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHH----HH
Q 028237           64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF----AK  139 (211)
Q Consensus        64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  139 (211)
                      ..+.|.+.+..+++.++++++|+|+.++.     ..|...+..... +.|+++|+||+|+.+.. ...+...++    ++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            46789999999999999999999999864     345555555543 78999999999996533 334444433    56


Q ss_pred             HcCC---cEEEEecCCCCCHHHHHHHHHHH
Q 028237          140 EHGL---IFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       140 ~~~~---~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ..++   +++.+||++|.|++++++.|.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999998664

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.95  E-value=2.4e-09  Score=86.61  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=69.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC--CceeEEEEEEEEE--CCEEEEEEEEeCCCcchh-------------
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITI--DNKPIKLQIWDTAGQESF-------------   68 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~-------------   68 (211)
                      .++++|+|++|+|||||+|.|.+..+......  ..+.......+..  .+....+.++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            36799999999999999999998754221111  1112221222222  222347889999985321             


Q ss_pred             -hhhh----HHhh---------cC--Cc-EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC-
Q 028237           69 -RSIT----RSYY---------RG--AA-GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-  130 (211)
Q Consensus        69 -~~~~----~~~~---------~~--~d-~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-  130 (211)
                       ...+    ..+.         ..  +| +++|+.|....-+..+    +..+... ..+.|+|+|.||+|.....+.. 
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccchHHHHH
Confidence             0111    1111         11  23 3556666654333222    1222222 2589999999999975422110 


Q ss_pred             -HHHHHHHHHHcCCcEEEEec
Q 028237          131 -TEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus       131 -~~~~~~~~~~~~~~~~~~sa  150 (211)
                       ...+.......|++++.+|.
T Consensus       197 l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHcCCcEEecCC
Confidence             11122222335677777774

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.93  E-value=6.4e-11  Score=94.74  Aligned_cols=140  Identities=15%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC------CCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK------RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------IT   72 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~   72 (211)
                      .+|+++|.+|+|||||+|+|++.      .......+  +++.....+.+..   .+.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999976      22222222  3333344454443   267999999542221        12


Q ss_pred             HHhh--cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           73 RSYY--RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        73 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      ..++  ...++++++++....-....+..    +......+.|+++++||.|..+... .....+.+.+..+..+...++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCCCCc
Confidence            2222  66789999998842210000000    1112234789999999999865332 233345566667777776666


Q ss_pred             CCCCCH
Q 028237          151 KTAQNV  156 (211)
Q Consensus       151 ~~g~~v  156 (211)
                      .+..++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            654444

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.92  E-value=2.6e-09  Score=85.40  Aligned_cols=98  Identities=22%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHH----H
Q 028237           63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF----A  138 (211)
Q Consensus        63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~  138 (211)
                      ..++.|.+...++++.++++++|+|+.++..     .|...+..... +.|+++|+||+|+.+.. ...+..+.+    +
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence            3578899999999999999999999999773     33444444332 78999999999996532 334444443    5


Q ss_pred             HHcCC---cEEEEecCCCCCHHHHHHHHHHHH
Q 028237          139 KEHGL---IFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       139 ~~~~~---~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      +..++   +++.+||++|.|++++++.+.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55676   689999999999999999887643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.89  E-value=4.7e-11  Score=95.49  Aligned_cols=136  Identities=14%  Similarity=0.134  Sum_probs=77.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-----CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------hhH
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-----PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS--------ITR   73 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~   73 (211)
                      .+|+++|.+|+|||||+|+|++....     .......+++.....+.+...   +.++||||......        ...
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            57999999999999999999886321     111222344444555555442   77999999643221        111


Q ss_pred             Hh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           74 SY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        74 ~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      .+  ....+..+++++.........+.    .+......+.|+++++||.|..+... .....+.+.+..+..+++.++
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence            22  35677888888874211000000    01112234789999999999865332 233344555666766555554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.89  E-value=4.7e-08  Score=78.96  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=82.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc-eeEE--EEEEEEECCEEEEEEEEeCCCcchhhh-----hhHHhhc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEF--GARMITIDNKPIKLQIWDTAGQESFRS-----ITRSYYR   77 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~   77 (211)
                      ...++|+|++|||||||+|.+.+...+..-.... +...  ...... ......+.+||++|......     +....+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3479999999999999999999843322211111 1111  001111 11112578999998542211     1111233


Q ss_pred             CCcEEEEEEECCC--HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-------CCCCCCHHHH----HHHH----HH
Q 028237           78 GAAGALLVYDITR--RETFNHLASWLEDARQHANANMTIMLIGNKCDLA-------HRRAVSTEEG----EQFA----KE  140 (211)
Q Consensus        78 ~~d~~i~v~d~~~--~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~  140 (211)
                      ..+..++ ++...  .....    +...+..   .+.|++++.||.|+.       .-+.....++    .++.    .+
T Consensus       148 ~~~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3455554 77762  22211    1122222   278999999999963       1122233333    3333    12


Q ss_pred             cC---CcEEEEec--CCCCCHHHHHHHHHHHH
Q 028237          141 HG---LIFMEASA--KTAQNVEEAFIKTAATI  167 (211)
Q Consensus       141 ~~---~~~~~~sa--~~g~~v~~~~~~l~~~~  167 (211)
                      .+   ..++.+|+  ..+.|++++.+.+.+.+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence            22   24788999  55567999888887665

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.89  E-value=3e-09  Score=82.00  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             EEeCCCcc-hhhhhhHHhhcCCcEEEEEEECCCHhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHH
Q 028237           59 IWDTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE  135 (211)
Q Consensus        59 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  135 (211)
                      |-..||+. .........+..+|++++|+|+.+|.+..  .+..++        .++|.++++||+|+.+..  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            34578875 44556777789999999999999987654  233332        378999999999996421  112223


Q ss_pred             HHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          136 QFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       136 ~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++.+..+++++.+||.++.|+.+++..+.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            34445578999999999999999999888777654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.88  E-value=3.9e-10  Score=93.23  Aligned_cols=151  Identities=13%  Similarity=0.071  Sum_probs=83.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHh------hCCCC----CCCCCC-----------ceeEEEEEEEE-------------E
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFT------DKRFQ----PVHDLT-----------IGVEFGARMIT-------------I   50 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~   50 (211)
                      ....|+|+|.+||||||+++.|.      +.+..    +.+.+.           .+..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999997      32210    000000           01111110000             0


Q ss_pred             CCEEEEEEEEeCCCcchhh-hhh---HHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q 028237           51 DNKPIKLQIWDTAGQESFR-SIT---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDL  123 (211)
Q Consensus        51 ~~~~~~~~i~D~~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~  123 (211)
                      ....+.+.|+||||..... .+.   ..+  +..+|.+++|+|........   .....+..    ..|+ ++|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence            0024678999999965322 111   111  23789999999998643311   11222222    1464 899999998


Q ss_pred             CCCCCCCHHHHHHHHHHcCCcE------------------EEEecCCCCC-HHHHHHHHHHH
Q 028237          124 AHRRAVSTEEGEQFAKEHGLIF------------------MEASAKTAQN-VEEAFIKTAAT  166 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~g~~-v~~~~~~l~~~  166 (211)
                      .....  .  ........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g--~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG--G--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT--H--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH--H--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            53221  1  222334445443                  2368888988 98888888765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.82  E-value=1.1e-08  Score=78.33  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC-------CCceeEEEEEEEEEC--CEEEEEEEEeCCCcchh-------h
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMITID--NKPIKLQIWDTAGQESF-------R   69 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~-------~   69 (211)
                      .++++|+|++|||||||+|.|.+...+..-.       ...........+...  +-...+.++|++|....       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998753322110       000000001111111  11236789999984210       0


Q ss_pred             hh----h---HH--------------hhcCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           70 SI----T---RS--------------YYRGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        70 ~~----~---~~--------------~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      .+    .   ..              ....+++.++++|... +-.... ...+..+   ... .++++|++|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence            00    0   00              1123578888888542 211111 2222222   223 8999999999975432


Q ss_pred             CC--CHHHHHHHHHHcCCcEEE
Q 028237          128 AV--STEEGEQFAKEHGLIFME  147 (211)
Q Consensus       128 ~~--~~~~~~~~~~~~~~~~~~  147 (211)
                      +.  ....+.......++.++.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            21  122334445566777654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.59  E-value=4.8e-08  Score=75.25  Aligned_cols=58  Identities=26%  Similarity=0.425  Sum_probs=36.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   66 (211)
                      ..++|+++|.+|+|||||+|+|.+........ ..+++.....+....   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            45899999999999999999999876432222 223333333344433   57899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.52  E-value=3.4e-08  Score=75.26  Aligned_cols=57  Identities=26%  Similarity=0.437  Sum_probs=36.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+....   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5899999999999999999998765322 22234444333343332   578999999654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.38  E-value=1.6e-06  Score=70.44  Aligned_cols=86  Identities=16%  Similarity=0.042  Sum_probs=51.8

Q ss_pred             EEEEEEeCCCcchhhh-----hhH-HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      +.+.|+||+|......     +.. .....+|.+++|+|.........   ....+...   -.+..||+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcc---
Confidence            6788999999543221     111 12335789999999876433222   12222222   345679999999743   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEec
Q 028237          129 VSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                       ..-.+..+....+.|+..++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             233455666678889777765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.36  E-value=7.1e-08  Score=73.50  Aligned_cols=93  Identities=14%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CCCcch-hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028237           62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE  140 (211)
Q Consensus        62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  140 (211)
                      .||+.. ........+.++|++|+|+|+.+|.+.....  +.    ..  ++|.++|+||+|+.+..  ..+....+.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD----FS--RKETIILLNKVDIADEK--TTKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence            466543 2345667789999999999999887643211  11    11  78999999999996421  11223344455


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHH
Q 028237          141 HGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus       141 ~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      .++++ .+||.++.|+.+++..+.+
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67888 9999999999998887654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.24  E-value=1.5e-06  Score=73.23  Aligned_cols=63  Identities=21%  Similarity=0.128  Sum_probs=40.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-CceeEEEEEEEE--E-CCEEEEEEEEeCCCcch
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMIT--I-DNKPIKLQIWDTAGQES   67 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~i~D~~G~~~   67 (211)
                      ..++|+|+|.+|+|||||+|+|++......... +.+.+.....+.  . ......+.++||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            467899999999999999999998764321111 112222222221  1 12345788999999653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.22  E-value=6e-06  Score=70.15  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ   32 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~   32 (211)
                      ..|+|+|++|||||||++.+.+-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            35999999999999999999986433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.19  E-value=5.9e-06  Score=64.00  Aligned_cols=92  Identities=16%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             EEEEEEEeCCCcch--hh-hhhH-----HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q 028237           54 PIKLQIWDTAGQES--FR-SITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLA  124 (211)
Q Consensus        54 ~~~~~i~D~~G~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~  124 (211)
                      .+.+.|+||||...  .. .+..     .....+|.+++|+|......   .......+..    ..| ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            35789999999766  32 1221     23457899999999864321   1122222222    345 77899999974


Q ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237          125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      .    ....+..+....+.|+..++  .|+++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            2    23445667778888977766  4655544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.18  E-value=7.5e-06  Score=66.64  Aligned_cols=84  Identities=17%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCcchhhh-hh---HHh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCC-c-EEEEEecCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS-IT---RSY--YRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-T-IMLIGNKCDLAH  125 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~D~~~  125 (211)
                      .+.+.|+||||...... +.   ...  +..+|.+++|+|......   ....   ..... ... | ..+|+||+|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~-~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFK-EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHH-TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHh-hcccCCeEEEEeCCCCcc
Confidence            46788999999654321 11   111  236889999999875432   1111   22222 234 5 889999999743


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEE
Q 028237          126 RRAVSTEEGEQFAKEHGLIFMEA  148 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      .    ......+....+.++..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    122344666677775544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.18  E-value=4.2e-07  Score=70.61  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEE
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFN-HLASWLEDARQHANANMTIMLIGNKCDLAHRRA--VSTEEGEQFAKEHGLIFM  146 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~  146 (211)
                      .+.+..+.++|.+++|+|+.+|.... .+..++....   ..++|.++|+||+|+.+...  ...+....+....+.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            34455789999999999999776433 3333322221   24889999999999965321  012334445556688999


Q ss_pred             EEecCCCCCHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIK  162 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~  162 (211)
                      .+||.++.|+++++..
T Consensus       155 ~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          155 LTSSKDQDSLADIIPH  170 (307)
T ss_dssp             ECCHHHHTTCTTTGGG
T ss_pred             EEecCCCCCHHHHHhh
Confidence            9999999888766554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.17  E-value=5.3e-06  Score=67.36  Aligned_cols=91  Identities=14%  Similarity=0.057  Sum_probs=54.5

Q ss_pred             EEEEEEEeCCCcch--hh----hhhHH--hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           54 PIKLQIWDTAGQES--FR----SITRS--YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        54 ~~~~~i~D~~G~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      .+.+.|+||||...  ..    .....  .....+.+++|+|.........   ....+...   -.+..||+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence            46788999999543  11    11111  1225689999999976433222   22222222   246789999999742


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237          126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                          ..-.+..+....+.|+..++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                344456666678999877775  5554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.08  E-value=9.4e-06  Score=64.29  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             hhcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCcEEEEecCC
Q 028237           75 YYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-STEEGEQFAKEHGLIFMEASAKT  152 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~  152 (211)
                      ...++|.+++|.+.. |.. ...+..++.....   .++|.++|+||+|+.+.... ..+.........|++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            367899999887754 543 3333333332222   27888999999999653210 01112233345688999999999


Q ss_pred             CCCHHHHHHH
Q 028237          153 AQNVEEAFIK  162 (211)
Q Consensus       153 g~~v~~~~~~  162 (211)
                      +.|+.++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999987764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.90  E-value=2.6e-05  Score=61.19  Aligned_cols=93  Identities=12%  Similarity=0.056  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCcchhhh-----hhH-HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      ..+.+.|++|......     +.. .-.-..|-.++++|.....   .+......+...   -...++++||.|...   
T Consensus       212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~it~iilTKlD~~a---  282 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VKIDGIILTKLDADA---  282 (328)
T ss_dssp             CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SCCCEEEEECGGGCS---
T ss_pred             chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cCCCEEEEeCcCCcc---
Confidence            3456789999643221     111 0122468889999976443   222223333322   123478889999532   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 028237          129 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                       ..-.+..+....+.|+..++  +|++++++
T Consensus       283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          283 -RGGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence             23335567777789877776  66665443

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.78  E-value=1.6e-06  Score=71.43  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--hhhh--------HHh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--RSIT--------RSY   75 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~--------~~~   75 (211)
                      .+.|+++|.+||||||+.++|........ ..+.............+......+||..|.+.+  ...+        ..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999875422110 111010000000000111123457898886322  2222        556


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN  119 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~n  119 (211)
                      +...++.++|+|.++. +.+....|+..+...   +.+++.+-.
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~  157 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVES  157 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEE
Confidence            6667888999999987 344445565555544   344554443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.66  E-value=5.6e-05  Score=61.59  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..-|.|+|++++|||||+|.|++.
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHhhh
Confidence            456899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.58  E-value=4e-05  Score=54.73  Aligned_cols=23  Identities=39%  Similarity=0.772  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ++++|+|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.46  E-value=7.2e-05  Score=54.61  Aligned_cols=29  Identities=31%  Similarity=0.305  Sum_probs=22.2

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+......|+|+|++|||||||++.|.+.
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            56566678999999999999999998763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.39  E-value=0.00011  Score=58.28  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999997654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.37  E-value=9.9e-05  Score=52.65  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.37  E-value=9.8e-05  Score=53.59  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|+|++|||||||++.|.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.34  E-value=0.00039  Score=53.88  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++++|++|||||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            47899999999999999998 53

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.34  E-value=0.00012  Score=53.11  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      |+......|+|+|++||||||+++.|.+..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            555555679999999999999999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.33  E-value=6.2e-05  Score=58.44  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.30  E-value=0.00013  Score=52.88  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.30  E-value=0.00013  Score=53.21  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.28  E-value=0.0021  Score=52.31  Aligned_cols=82  Identities=15%  Similarity=0.078  Sum_probs=45.5

Q ss_pred             EEEEEEEeCCCcchhh-hhhH-----HhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC
Q 028237           54 PIKLQIWDTAGQESFR-SITR-----SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHR  126 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~  126 (211)
                      .+.+.|+||||..... .+..     .....++.+++|+|.......   ......+..    ..+ .-+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            4678899999965432 1111     224478899999998753221   112222221    233 3578999997432


Q ss_pred             CCCCHHHHHHHHHHcCCcEE
Q 028237          127 RAVSTEEGEQFAKEHGLIFM  146 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~  146 (211)
                      .    ..+..+....+.|+.
T Consensus       256 ~----g~~l~i~~~~~~Pi~  271 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIK  271 (433)
T ss_dssp             C----THHHHHHHHHCCCEE
T ss_pred             H----HHHHHHHHHHCCCeE
Confidence            2    233455555566633

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.24  E-value=0.00014  Score=51.47  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028237            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~   27 (211)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.24  E-value=0.00018  Score=51.51  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-.|+|+|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.23  E-value=0.00018  Score=52.11  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..-.|+|+|++|||||||++.|.+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3456999999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.23  E-value=0.00018  Score=50.24  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.23  E-value=0.00018  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.23  E-value=0.00017  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998743

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.20  E-value=0.00018  Score=53.69  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.16  E-value=0.00021  Score=52.90  Aligned_cols=22  Identities=41%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.16  E-value=0.00022  Score=52.04  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=21.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.13  E-value=0.00026  Score=53.03  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.11  E-value=0.00032  Score=50.83  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            46889999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.10  E-value=0.00027  Score=51.93  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.10  E-value=0.00027  Score=54.02  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.10  E-value=0.00029  Score=51.46  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      --|+|+|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.09  E-value=0.00027  Score=53.59  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.07  E-value=0.00029  Score=53.29  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.06  E-value=0.0003  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.05  E-value=0.00033  Score=50.13  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|||||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.05  E-value=0.00033  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.04  E-value=0.00032  Score=53.21  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.04  E-value=0.00033  Score=52.42  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.03  E-value=0.00034  Score=52.91  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.03  E-value=0.00044  Score=52.57  Aligned_cols=23  Identities=43%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.03  E-value=0.00048  Score=48.60  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.03  E-value=0.00034  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.02  E-value=0.00028  Score=51.62  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.02  E-value=0.00037  Score=50.21  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.02  E-value=0.00039  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|+|++|||||||.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.02  E-value=0.00039  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.02  E-value=0.00036  Score=52.53  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.01  E-value=0.00038  Score=52.42  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.00  E-value=0.00039  Score=52.86  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999975

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.97  E-value=0.0004  Score=52.61  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.97  E-value=0.00046  Score=49.55  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.95  E-value=0.00043  Score=52.24  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.95  E-value=0.00043  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.95  E-value=0.00057  Score=52.34  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.95  E-value=0.00043  Score=52.60  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.94  E-value=0.00048  Score=50.02  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.94  E-value=0.00051  Score=51.41  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~   27 (211)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.92  E-value=0.00053  Score=48.03  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 028237            7 FKYIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l   26 (211)
                      +-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.92  E-value=0.00051  Score=50.21  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.91  E-value=0.00049  Score=52.14  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.91  E-value=0.00058  Score=48.76  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .......|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3334568999999999999999998654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.91  E-value=0.00069  Score=48.33  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=23.2

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      |+..-...|+|.|.+||||||+.+.|..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            5555556799999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.90  E-value=0.00054  Score=53.07  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999998864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.89  E-value=0.00055  Score=50.07  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.88  E-value=0.0006  Score=51.71  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.87  E-value=0.00062  Score=49.29  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999986

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.87  E-value=0.00056  Score=53.23  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...-|+|+|++|||||||++.|.+-
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            3567999999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.87  E-value=0.00069  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.86  E-value=0.00069  Score=49.83  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.85  E-value=0.00065  Score=47.56  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.85  E-value=0.00059  Score=50.18  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.84  E-value=0.00075  Score=52.23  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++++|++|||||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            478999999999999999987543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.83  E-value=0.00076  Score=50.46  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..-|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.81  E-value=0.00073  Score=47.94  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-++|+|++|||||||++.|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.80  E-value=0.00087  Score=48.59  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999975

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.80  E-value=0.00045  Score=51.18  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=15.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHh-hC
Q 028237            8 KYIIIGDTGVGKSCLLLQFT-DK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~-~~   29 (211)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.79  E-value=0.00066  Score=52.24  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.00075  Score=48.80  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.78  E-value=0.00082  Score=48.42  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.78  E-value=0.00064  Score=48.22  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|+|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.76  E-value=0.00094  Score=52.89  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.76  E-value=0.00077  Score=53.48  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.75  E-value=0.00088  Score=48.88  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.75  E-value=0.0007  Score=53.83  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.74  E-value=0.00091  Score=48.32  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.74  E-value=0.00054  Score=53.11  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.74  E-value=0.0008  Score=53.24  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.74  E-value=0.00085  Score=48.82  Aligned_cols=24  Identities=17%  Similarity=0.092  Sum_probs=21.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ....|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.73  E-value=0.0011  Score=47.13  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999863

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.73  E-value=0.00071  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..-|+|+|++|||||||.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.73  E-value=0.00085  Score=49.04  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.72  E-value=0.00089  Score=47.24  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.72  E-value=0.001  Score=47.47  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.71  E-value=0.00086  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999998753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.71  E-value=0.00089  Score=53.43  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.71  E-value=0.0009  Score=53.12  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.00047  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.69  E-value=0.001  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.67  E-value=0.00097  Score=53.15  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.66  E-value=0.001  Score=53.03  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.65  E-value=0.0012  Score=46.18  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.64  E-value=0.0012  Score=47.14  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.62  E-value=0.0011  Score=52.59  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.60  E-value=0.0014  Score=47.22  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.60  E-value=0.0014  Score=49.07  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..++|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.59  E-value=0.0016  Score=47.17  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...|+|+|++|||||||.+.|...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.59  E-value=0.0013  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.58  E-value=0.00081  Score=53.10  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.58  E-value=0.0012  Score=51.24  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..-|+|+|++|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998763

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.58  E-value=0.0013  Score=48.21  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.58  E-value=0.0015  Score=46.62  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.58  E-value=0.0017  Score=46.99  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...-|+|+|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.57  E-value=0.0014  Score=47.37  Aligned_cols=23  Identities=17%  Similarity=0.550  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.55  E-value=0.0014  Score=48.31  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.54  E-value=0.0016  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.54  E-value=0.0013  Score=52.78  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.54  E-value=0.0013  Score=51.60  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.54  E-value=0.001  Score=45.92  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.53  E-value=0.0014  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      --|+|+|++|||||||++.+.+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.53  E-value=0.0014  Score=50.75  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      --++++|++||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.52  E-value=0.0018  Score=46.71  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ....|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.52  E-value=0.0019  Score=50.41  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++-|+|+|++|||||||++.|.+
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.52  E-value=0.0014  Score=49.97  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.51  E-value=0.0014  Score=46.14  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.51  E-value=0.0018  Score=47.39  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999975

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.51  E-value=0.0016  Score=48.84  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=21.3

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ....+.|+|.|.+||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34467899999999999999998865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.50  E-value=0.0017  Score=45.96  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.50  E-value=0.0015  Score=48.17  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.48  E-value=0.0017  Score=45.72  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|++|||||||+++|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.48  E-value=0.0014  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.46  E-value=0.0076  Score=40.99  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999887654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.45  E-value=0.00081  Score=53.23  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.45  E-value=0.0014  Score=48.10  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998854

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.44  E-value=0.0013  Score=48.69  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..-|+|.|+.|||||||++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457999999999999999998865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.44  E-value=0.0018  Score=46.21  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.43  E-value=0.0018  Score=51.70  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.43  E-value=0.0046  Score=50.35  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=19.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~   27 (211)
                      ...=|.|+|..++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            34567799999999999999664

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0015  Score=53.51  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|+|++|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            46899999999999999998764

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.0041  Score=45.86  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=18.6

Q ss_pred             eEEEE--cCCCCCHHHHHHHHhhC
Q 028237            8 KYIII--GDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~--G~~~~GKStli~~l~~~   29 (211)
                      ||+|+  |.++.|||+|++++.+.
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             ceEEEecCcccccHHHHHHHHhcc
Confidence            55555  99999999999999976

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.41  E-value=0.0022  Score=49.24  Aligned_cols=24  Identities=21%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ....|+|.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999964

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.40  E-value=0.0017  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.40  E-value=0.002  Score=45.68  Aligned_cols=21  Identities=29%  Similarity=0.210  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.+|+|++|||||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.39  E-value=0.0025  Score=49.02  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ....|+|+|++|||||||++.|..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.39  E-value=0.0014  Score=51.09  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .--++|+|+.|||||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3457899999999999999999764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.39  E-value=0.002  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999854

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.38  E-value=0.002  Score=50.87  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      +++|+|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999999874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.37  E-value=0.0021  Score=45.97  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.36  E-value=0.002  Score=47.22  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|+|||||++.+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.36  E-value=0.002  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.35  E-value=0.0022  Score=48.23  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~   27 (211)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999987

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.35  E-value=0.0021  Score=48.36  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999854

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.34  E-value=0.0027  Score=45.17  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|.+||||||+.+.|..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.34  E-value=0.0027  Score=47.60  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.34  E-value=0.0021  Score=46.58  Aligned_cols=23  Identities=17%  Similarity=-0.010  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.33  E-value=0.002  Score=53.57  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.33  E-value=0.00087  Score=48.77  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.31  E-value=0.0027  Score=47.95  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.29  E-value=0.0023  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      --|+|+|++||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            3689999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.29  E-value=0.0026  Score=44.99  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.28  E-value=0.0028  Score=45.54  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=22.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....|+|.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.27  E-value=0.0025  Score=44.57  Aligned_cols=22  Identities=14%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.25  E-value=0.0035  Score=52.46  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.+...
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999987543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.25  E-value=0.0027  Score=47.00  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.24  E-value=0.0032  Score=52.69  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      -++|+|++|||||||++.+.+...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999987543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.24  E-value=0.0023  Score=45.37  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.24  E-value=0.0025  Score=52.53  Aligned_cols=92  Identities=16%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCcchhhh-----hh--HHhh-----cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237           55 IKLQIWDTAGQESFRS-----IT--RSYY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD  122 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~-----~~--~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  122 (211)
                      +.+.|+||+|......     +.  ....     ...+-+++|+|.+....   .......+....  +. ..+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~i-tgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--GL-TGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--CC-SEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--CC-CEEEEEcCC
Confidence            4577899999642211     11  1111     13567888999764322   112222232221  22 357889999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237          123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      -..    ..-.+..+....+.++..+.  .|.++++
T Consensus       450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD  479 (503)
T 2yhs_A          450 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED  479 (503)
T ss_dssp             GCS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             Ccc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence            532    22345566677788866543  4444543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.22  E-value=0.0022  Score=48.19  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....|+++|++||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999998653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.22  E-value=0.0025  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|+|||||++.+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.21  E-value=0.015  Score=45.57  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++|.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.20  E-value=0.0027  Score=49.81  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.20  E-value=0.0019  Score=45.68  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=16.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.19  E-value=0.0033  Score=44.32  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.18  E-value=0.0037  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.16  E-value=0.0031  Score=46.33  Aligned_cols=20  Identities=20%  Similarity=0.448  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999988864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0039  Score=52.90  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.+-..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            479999999999999999987543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.14  E-value=0.0036  Score=43.69  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998854

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.12  E-value=0.0031  Score=51.90  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.11  E-value=0.0034  Score=46.45  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.10  E-value=0.0034  Score=45.66  Aligned_cols=21  Identities=29%  Similarity=0.208  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.09  E-value=0.0038  Score=42.95  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028237            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~   27 (211)
                      .+|+|++|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999974

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.07  E-value=0.0035  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      +++|+|++|||||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.06  E-value=0.0035  Score=47.12  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.06  E-value=0.0049  Score=44.38  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....|+|.|..||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.03  E-value=0.0039  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|.+||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.01  E-value=0.0041  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.|+|.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.01  E-value=0.0052  Score=52.17  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.+...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            589999999999999999987543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.99  E-value=0.0043  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..++++|+|++||||||+.+.|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            468999999999999999998854

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.97  E-value=0.0051  Score=45.53  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.97  E-value=0.0039  Score=52.69  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999999865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.96  E-value=0.0045  Score=47.31  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.|+|.|.+||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999873

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.92  E-value=0.0046  Score=46.37  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-.|+|.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.90  E-value=0.0051  Score=51.43  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999987543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.90  E-value=0.0053  Score=52.11  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            489999999999999999987543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.89  E-value=0.0059  Score=51.07  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999987643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.89  E-value=0.0057  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.86  E-value=0.0041  Score=43.72  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.84  E-value=0.0057  Score=46.98  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.83  E-value=0.005  Score=49.14  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.++|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999985

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.83  E-value=0.0049  Score=46.89  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.82  E-value=0.0058  Score=44.90  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.82  E-value=0.016  Score=41.63  Aligned_cols=85  Identities=11%  Similarity=-0.009  Sum_probs=56.2

Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCCCCCHH
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTE  132 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  132 (211)
                      +.+.++|+|+..  .......+..+|.+|+++..+...  ..+..++..+....  ..+.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            678899999866  334555677799999999887554  55666666665443  245678999999995322   223


Q ss_pred             HHHHHHHHcCCcEE
Q 028237          133 EGEQFAKEHGLIFM  146 (211)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (211)
                      +..++.+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            44555555565543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.73  E-value=0.0069  Score=43.56  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988754

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.73  E-value=0.0058  Score=48.53  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028237            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~   27 (211)
                      ++|+|++|||||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999976

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.73  E-value=0.0031  Score=48.48  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=18.2

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      |+.. .+-|+|.|+.||||||+.+.|..
T Consensus         1 Ms~~-~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence            5543 34599999999999999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.72  E-value=0.0046  Score=52.42  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999998653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.71  E-value=0.0039  Score=52.63  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999988865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.0071  Score=51.31  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      ++|+|++|||||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999987643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.66  E-value=0.0084  Score=43.18  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.61  E-value=0.068  Score=38.69  Aligned_cols=86  Identities=13%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             EEEEEEEeCCCc-chhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHH
Q 028237           54 PIKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE  132 (211)
Q Consensus        54 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  132 (211)
                      .+.+.++|+|+. ...  .....+..+|.+|+++..+ ..+...+..++..+....  +.++.+|+|+.|....  ....
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence            367889999986 432  3445677899999999876 555666666666665533  5668899999986420  1234


Q ss_pred             HHHHHHHHcCCcEE
Q 028237          133 EGEQFAKEHGLIFM  146 (211)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (211)
                      +..+..++.+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            55555555665544

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.57  E-value=0.0053  Score=51.94  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.53  E-value=0.0079  Score=43.96  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.52  E-value=0.0074  Score=47.63  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -+.|+|++|+|||||++.+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.50  E-value=0.0078  Score=46.38  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=47.3

Q ss_pred             EEEEEEEeCCCcchhhh--hh--HHhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           54 PIKLQIWDTAGQESFRS--IT--RSYYR--GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      ...+.|.||+|......  +.  ...+.  ..+.+++|+|.+..  ...+..+...+.   ..+ ..-+++||.|.... 
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-  254 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-  254 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC-
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc-
Confidence            35788999999764432  11  12232  35678889987642  122333222221   112 23566799997432 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 028237          128 AVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                         ...+.......++|+..+.
T Consensus       255 ---~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 ---LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ---CHHHHHHHHTCSCCCSEEC
T ss_pred             ---hhHHHHHHHHHCcCEEEEE
Confidence               2356667777888855443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.47  E-value=0.0082  Score=48.55  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..-|+|+|++||||||+.+.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346889999999999999998753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.46  E-value=0.0091  Score=40.67  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...|+|.|++|+|||++.+.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.46  E-value=0.0093  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.45  E-value=0.0083  Score=45.90  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-.|+|.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            347999999999999999999764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.45  E-value=0.0091  Score=43.09  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.43  E-value=0.0089  Score=44.21  Aligned_cols=21  Identities=29%  Similarity=0.416  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999887754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.40  E-value=0.009  Score=45.38  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.37  E-value=0.01  Score=52.89  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .++|+|++|||||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999986543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.37  E-value=0.0013  Score=48.67  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      ++|+|++|||||||++.+.+-..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            46889999999999999876433

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.37  E-value=0.0092  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.|+|.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.37  E-value=0.0081  Score=43.65  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+++.|++|+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.37  E-value=0.0099  Score=44.45  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.|+|.|++|+|||+|++.+...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.32  E-value=0.01  Score=45.92  Aligned_cols=86  Identities=22%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCcchhhh-hh------HHhh-----cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237           55 IKLQIWDTAGQESFRS-IT------RSYY-----RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD  122 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  122 (211)
                      +.+.|.|+||...... +.      ...+     ...+.+++|+|.....  +.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            4588999999532221 10      1111     2478889999987332  22222 12222221  2 3456789999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237          123 LAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      ....    .-.+..+....+.|+..+..
T Consensus       261 ~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence            6322    23367778888888766653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.32  E-value=0.011  Score=42.84  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028237            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~   27 (211)
                      .+|+|++|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999999863

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.31  E-value=0.012  Score=43.28  Aligned_cols=27  Identities=15%  Similarity=0.039  Sum_probs=21.5

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ......-|+|.|.+||||||+++.|..
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344567799999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.31  E-value=0.0071  Score=53.88  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.30  E-value=0.044  Score=42.62  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.28  E-value=0.011  Score=42.71  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.26  E-value=0.015  Score=45.88  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~   27 (211)
                      ..+|+|+|++|+||||+.+.|.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            4579999999999999998764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.26  E-value=0.12  Score=38.06  Aligned_cols=91  Identities=11%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE  133 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  133 (211)
                      .+.+.|+|+|+...  ......+..+|.+|+++..+ ..+...+..+++.+.........+.+|+|+.+...  ....+ 
T Consensus       118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-  191 (245)
T 3ea0_A          118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-  191 (245)
T ss_dssp             HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH-
T ss_pred             hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH-
Confidence            36688999987542  24555677899999999876 66677777777777654333456889999998643  23333 


Q ss_pred             HHHHHHHcCCcEEEEecCC
Q 028237          134 GEQFAKEHGLIFMEASAKT  152 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~sa~~  152 (211)
                        .+.+..+.+++.+-..+
T Consensus       192 --~~~~~~~~~v~~~ip~~  208 (245)
T 3ea0_A          192 --EIEKVIGRPISKRIPQD  208 (245)
T ss_dssp             --HHHHHHTSCEEEEECCC
T ss_pred             --HHHHHhCCCeEEECCCC
Confidence              34445677766554333

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.25  E-value=0.01  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.22  E-value=0.013  Score=54.12  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +|+|+|++|||||||++.|.+-
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7999999999999999999853

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.19  E-value=0.011  Score=46.63  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.15  E-value=0.013  Score=45.04  Aligned_cols=24  Identities=29%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +.-+++.|++|+|||+|.+.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346778899999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.11  E-value=0.0094  Score=44.92  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....|+|.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999888754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.05  E-value=0.013  Score=45.88  Aligned_cols=22  Identities=18%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.05  E-value=0.012  Score=49.03  Aligned_cols=20  Identities=25%  Similarity=0.630  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHH--Hhh
Q 028237            9 YIIIGDTGVGKSCLLLQ--FTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~--l~~   28 (211)
                      ++|+|++|||||||++.  +.+
T Consensus        42 ~~l~G~nGsGKSTL~~~~ll~G   63 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFLYNG   63 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.04  E-value=0.013  Score=45.96  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3689999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.02  E-value=0.014  Score=46.25  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.01  E-value=0.014  Score=42.45  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +.|+|.|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.01  E-value=0.0084  Score=50.27  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...|+|+|++|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            357899999999999999998764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.99  E-value=0.015  Score=44.61  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..++|.|++|+|||+|++.+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999986543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.98  E-value=0.017  Score=42.91  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...|+|.|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.98  E-value=0.017  Score=44.95  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.93  E-value=0.017  Score=41.07  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999854

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.90  E-value=0.02  Score=40.35  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .-|++.|++|+||||+...|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998753

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.87  E-value=0.016  Score=45.86  Aligned_cols=21  Identities=33%  Similarity=0.287  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|+|||||++.+..
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            478999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.87  E-value=0.016  Score=44.49  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999988754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.87  E-value=0.016  Score=44.30  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...+++.|++|+|||+|++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.85  E-value=0.015  Score=46.71  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -++|+|++|+|||||++.|..
T Consensus       180 i~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=94.83  E-value=0.01  Score=51.01  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028237            8 KYIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l   26 (211)
                      .++|+|++|||||||++.+
T Consensus       350 ~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          350 FVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEEEECSTTSSHHHHHTTT
T ss_pred             EEEEEeeCCCCHHHHHHHH
Confidence            4799999999999999754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.82  E-value=0.016  Score=45.06  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.|+|.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.81  E-value=0.022  Score=42.98  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....++|.|++|+|||+|++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999998764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.80  E-value=0.017  Score=45.27  Aligned_cols=19  Identities=47%  Similarity=0.677  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028237            9 YIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~   27 (211)
                      .+|+|++|+|||||+..+.
T Consensus        26 ~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3699999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.80  E-value=0.019  Score=44.53  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-|+|+|++|||||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999999754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.75  E-value=0.018  Score=42.05  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .-|+|.|.+||||||+++.|..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999999854

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.75  E-value=0.02  Score=44.89  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -|+|+|+.|||||||...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.73  E-value=0.018  Score=46.75  Aligned_cols=20  Identities=35%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|+|++|+|||||++.+.+
T Consensus        29 ~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           29 TSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999865

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.70  E-value=0.018  Score=46.61  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      --|++.|+||+|||+|++.+.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.67  E-value=0.014  Score=45.41  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.+|+|++|+|||||+..+..
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.65  E-value=0.02  Score=46.53  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +-.|++.|+||+|||.|++.+.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            447999999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.65  E-value=0.021  Score=44.40  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..|+|.|++|+|||+|++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999754

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=94.63  E-value=0.0062  Score=49.03  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028237            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~   27 (211)
                      .++|+|++|||||||++.+.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.62  E-value=0.02  Score=44.75  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-60
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-55
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-54
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-54
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-52
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-52
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-51
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-51
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-51
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-50
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-49
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-47
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-44
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	8e-41
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-38
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-38
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-37
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	9e-37
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-36
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-36
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-35
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-35
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-35
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	9e-35
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-34
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-34
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-34
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-32
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-32
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-31
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-31
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-30
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-28
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-27
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-25
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-25
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-23
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-22
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	6e-21
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	7e-21
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-17
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-10
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	6e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	8e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	3e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	6e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.001
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.001
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.001
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.001
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  183 bits (466), Expect = 4e-60
 Identities = 85/170 (50%), Positives = 121/170 (71%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKC
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
           D+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A  I  K+
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  171 bits (433), Expect = 4e-55
 Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           + K ++IGD+GVGKSCLL++F + +F P    TIG++F  + + I+ K +KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           E FR+IT +YYRGA G +LVYDIT   TF ++  W +   +HAN    ++L+GNK D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
            R V+ ++GE  AKE G+ F+E+SAK   NV E F   A  I +KI
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (427), Expect = 4e-54
 Identities = 76/169 (44%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIW 60
            Y   FK +++GD+GVGK+CLL++F D  F       T+G++F  +++ +D   +KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120
           DTAGQE FRS+T +YYR A   LL+YD+T + +F+++ +WL +  ++A  ++ +ML+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            D AH R V  E+GE+ AKE+GL FME SAKT  NV+ AF   A  + +
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 6e-54
 Identities = 147/172 (85%), Positives = 154/172 (89%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID K IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
           QESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+++NM IMLIGNK DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
            RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ G+F
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 173

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 5e-52
 Identities = 100/173 (57%), Positives = 131/173 (75%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
           +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK 
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 120

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174
           DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  163 bits (413), Expect = 9e-52
 Identities = 78/179 (43%), Positives = 122/179 (68%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + + +D K +KLQIWDT
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A + +  +L+GNKCD
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           L  +R V  +  ++FA  + + F+E SA  + NVE+AF+  A  I + +     + + +
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 181

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (410), Expect = 1e-51
 Identities = 110/166 (66%), Positives = 134/166 (80%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
           L  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (409), Expect = 2e-51
 Identities = 91/170 (53%), Positives = 116/170 (68%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           L H RAV T+E   FA+++ L F+E SA  + NVEEAF      IY+ + 
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  160 bits (405), Expect = 7e-51
 Identities = 74/168 (44%), Positives = 107/168 (63%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           + Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + I  ++K IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           +   R VS+E G Q A   G  F EASAK   NV++ F +    I +K
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 1e-50
 Identities = 77/168 (45%), Positives = 111/168 (66%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y +LFK ++IG+ GVGK+CL+ +FT   F P    TIGV+F  + + I+ + +KLQIWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122
           AGQE FRSIT+SYYR A   +L YDIT  E+F  L  WL +  Q+A+  +  +L+GNK D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           LA RR VS +  E+F++   + ++E SAK + NVE+ F+  A  +  +
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 4e-49
 Identities = 75/163 (46%), Positives = 103/163 (63%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + I++D    KL IWDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FR++T SYYRGA G +LVYD+TRR+TF  L +WL +   +   N  + ++         
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           R V   EG +FA++H ++F+EASAKT   V+ AF +    I +
Sbjct: 128 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 11/181 (6%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI----------DN 52
           Y YL K + +GD+GVGK+  L ++TD +F P    T+G++F  + +              
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 53  KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
             + LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+   + +A    
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 113 T-IMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171
             I+LIGNK DL  +R V+  +  + A ++G+ + E SA T QNVE+A       I K++
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

Query: 172 Q 172
           +
Sbjct: 182 E 182

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 3e-44
 Identities = 69/161 (42%), Positives = 107/161 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK + +G+  VGK+ L+ +F    F   +  TIG++F ++ + ++++ I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FRS+  SY R +A A++VYDIT   +F     W++D R    +++ IML+GNK DLA +
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R VS EEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 3e-42
 Identities = 59/166 (35%), Positives = 97/166 (58%)

Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           AY FK +++G+  VGK+ L+L++ + +F   H  T+G  F  + + I  K + L IWDTA
Sbjct: 1   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 60

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123
           GQE F ++   YYR + GA+LVYDIT  ++F  + +W+++ R+     + + ++GNK DL
Sbjct: 61  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 120

Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
              R VS +E E +A+  G      SAK  + +EE F+     + +
Sbjct: 121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 8e-41
 Identities = 69/163 (42%), Positives = 108/163 (66%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            + S+   YYRGA  A++VYDIT  E+F    +W+++ ++ A+ N+ I L GNK DLA++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
           RAV  +E + +A ++ L+FME SAKT+ NV E F+  A  + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K I++G  GVGKS L LQF    F   ++ T    +  + + +D + +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLA 124
           E + +I  +Y+R   G L V+ IT  E+F   A + E   R   + N+  +L+GNK DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            +R VS EE +  A +  + ++E SAKT  NV++ F      I  +
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 9e-38
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAH 125
            F S+   Y +   G +LVY +  +++F +      +  R      + ++L+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 168
            R VS+ EG   A+E G  FME SAK+   V+E F +    + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 1e-37
 Identities = 61/168 (36%), Positives = 101/168 (60%), Gaps = 6/168 (3%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
            LFK I++GD GVGKS L+ ++   +F      TIGVEF  + + +D   + +QIWDTAG
Sbjct: 5   SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 64

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNK 120
           QE FRS+   +YRG+   LL + +   ++F +L++W ++   +A+     +   +++GNK
Sbjct: 65  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 124

Query: 121 CDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATI 167
            D++ R+ VSTEE + + +++G   + E SAK A NV  AF +    +
Sbjct: 125 IDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 2e-37
 Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 5/164 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           +FK I+IGD+ VGK+CL  +F   RF    + TIGV+F  R + ID + IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 66  ESF-RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDL 123
           E F +S+ + YYR     + VYD+T   +F+ L +W+E+ +QH  AN +  +L+GNKCDL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ---NVEEAFIKTA 164
                V T+  ++FA  H +   E SAK      +VE  F+  A
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 9e-37
 Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T  +F   +  T+  +  A  + I  +P  L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +  +    Y      L+ + +    +F ++         H       +L+G + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 127 RAV------------STEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
            +             + E  E+ A++   + ++E SA T + ++  F +      +  +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-36
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61
             A + K +++GD  VGK+CLL+ + +  F   +  T+  +  A  +T+  K   L ++D
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYD 63

Query: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121
           TAGQE +  +    Y      L+ + +    +F ++        +    N+  +LIG + 
Sbjct: 64  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 123

Query: 122 DL------------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAATI 167
           DL               + +  E+G++ AKE G   ++E SA T + ++  F +    I
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 1e-36
 Identities = 67/161 (41%), Positives = 98/161 (60%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  ++GDTGVGKS ++ +F +  F P  + TIG  F  + +   N+  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            FR++   YYRG+A A++VYDIT+ ETF+ L +W+ + RQH   ++ + + GNKCDL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           R V   + + +A     IF+E SAK A N+ E FI+ +  I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 5e-35
 Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 3/166 (1%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++G+  VGKS ++L+F    F    + TIG  F  + +TI+   +K +IWDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-- 125
           F S+   YYR A  AL+VYD+T+ ++F     W+++  + A+ ++ I L+GNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 126 -RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             R V+ EEGE+ A+E GL+F E SAKT +NV + F+     I  K
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 5e-35
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++GD  VGK+CLL+ +T   F   +  T+  +  +  + +D KP+ L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +  +    Y     +L+ + +    +F ++ +      +H   N  I+L+G K DL   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 127 RAVSTE------------EGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATI 167
           +    +            +G   AKE G + ++E SA T + ++  F +    +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 8e-35
 Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCD   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R V + + +  A+ +G+ ++E SAKT Q VE+AF      I +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 9e-35
 Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L +QF    F   +D TI  +   + + +D +   L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 126 RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R V  E+G+  A++     F+E+SAK+  NV E F      I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (297), Expect = 1e-34
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63
           +   K +++G  GVGKS L +QF    F   +D     +   ++ ++D  P +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCD 122
           GQE F ++   Y R   G LLV+ I  R++FN +   + +  R     +  ++L+GNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
           L  +R V   E   F   H + + EASAK   NV+EAF +    + K  +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 3e-34
 Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           ++ +++G  GVGKS L +QF    F   +D TI  +   +   ID++  +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAH 125
            F ++   Y R   G LLV+ +T R +F  +  +     +  + +    +LIGNK DL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
           +R V+ EEG+Q A++  + +MEASAK   NV++AF      + +K Q+
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (295), Expect = 4e-34
 Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 6/180 (3%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + + +D++ + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121
           E F+S+  ++YRGA   +LV+D+T   TF  L SW ++    A+     N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 181
           DL +R+  +         ++ + + E SAK A NVE+AF   A    K  Q+   ++ NE
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 179

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 5e-33
 Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 14/176 (7%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +I+GD   GK+CLL+  +  +F  V+  T+  E     I +D K ++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 127 RAV------------STEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYK 169
                            EEG   A   G   +ME SAKT   V E F        +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++GD GVGKS L +QF  K F P +D TI   +  +   IDN+   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAH 125
            F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 170
            R V+ ++G++ A ++ + ++E SAK    NV++ F      I ++
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +    +       T     G  + T+  K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAH 125
             R + R YY G  G + V D   R+  +     L          +  I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 126 RR---AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
                 +  + G    ++       + A +   + E      +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (280), Expect = 6e-32
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++GD+  GK+ LL  F    F   +  T+  E       ID + I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL---- 123
           + ++    Y  +   L+ +DI+R ET + +    +   Q    N  ++L+G K DL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 124 --------AHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQN-VEEAFIKTAATIYKK 170
                     +  VS ++G   AK+ G   ++E SA  ++N V + F         K
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 62/174 (35%), Positives = 103/174 (59%), Gaps = 7/174 (4%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPI-KLQIWDTAG 64
           + K II+GD+GVGK+ L+ ++ + ++   +  TIG +F  + +T+D   +  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN----MTIMLIGNK 120
           QE F+S+  ++YRGA   +LVYD+T   +F ++ SW ++   HAN N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 121 CDLAHRRAVSTEEGEQ-FAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQ 172
            D    + + +E+  Q  AK  G I     SAK A NV+ AF + A +  ++ Q
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 4/166 (2%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  I G  GVGKS L+++F  KRF   +D T+   +     TID++ + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT-AGQ 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDLAH 125
                   + R   G +LVYDIT R +F   L             N+T++L+GNK DL H
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 170
            R VSTEEGE+ A E    F E SA T + N+ E F +    + ++
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  110 bits (275), Expect = 4e-31
 Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L +                  G  + T+  K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSYKNLKLNVWDLGGQT 72

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAH 125
           S R   R YY   A  + V D T ++  +  +  L    Q     +  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 126 R---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
                 VS E      K+     + +SA   + + E        I ++
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K +++G+  VGKS ++ ++    F   +  TIGV+F  R I ++++ ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127
           F +IT++YYRGA   +LV+  T RE+F  ++SW E        ++   L+ NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            +  EE E  AK   L F   S K   NV E F   A    +
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 9/164 (5%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           + +++G    GK+ +L +            T     G  + T++ K I   +WD  GQ+ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKC---DL 123
            R + R Y++   G + V D   RE  N      +    +    +  +++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
            +   ++ + G    +          A +   + E     +  +
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           ++  + G  GVGKS L+L+F    F+  +  T+   +  ++I+ D     LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 61

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLA 124
            F ++ R         +LVY IT R++   L    E   +      ++ IML+GNKCD +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             R V + E E  A+     FME SAK   NV+E F +      ++
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 3e-28
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 3/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
            F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           +     +   F ++  L + + SAK+  N E+ F+  A  +   
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  I+G   VGKS L +QF + +F   +D TI   F  ++IT++ +   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQD 63

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAH 125
            +    ++Y     G +LVY +T  ++F  +               + IML+GNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 169
            R +S EEG+  A+     F+E+SAK  Q   + F +      K
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K II+G    GK+ +L QF+                G+ +  I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-TIMLIGNKCDLAH 125
           S RS   +YY      ++V D T RE  +     L     H +     +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 126 R---RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
                 +S        K+H        A T + + +      + +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 99.7 bits (247), Expect = 3e-27
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ +L +F  +        TI    G  + T++++  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASW-LEDARQHANANMTIMLIGNKCDLAH 125
           S RS  R+Y+    G + V D   R+              +   A  T+++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 126 RRAVST---EEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
             + +           + H       SA T +++          I  +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 2e-25
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            +  ++GD   GKS L+ +F    +Q +       E   + + +D +   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGA- 62

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD--LA 124
              +    +         + D    +  + L   L   R      + + L+G +     +
Sbjct: 63  -PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 125 HRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 173
             R V          +     + E  A    NV+  F + A  +    + 
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.4 bits (236), Expect = 2e-25
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +++G    GK+ LL Q   +    +         G  + ++ ++  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQSQGFKLNVWDIGGQR 71

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAH 125
             R   RSY+      + V D   R+ F      L +  +    + + +++  NK DL  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 126 RR---AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
                 ++        ++        SA T + V++        +
Sbjct: 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 3e-25
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 3/167 (1%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
           +K +++G  GVGKS L   F      P            R I +D +   L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML-IGNKCDLAH 125
             R +           ++VY +T + +F   +      R+    +   ++ +GNK DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ 172
            R VS +EG   A      F+E SA    NV+  F      I  +  
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 5e-25
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 3/169 (1%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTA 63
             ++ ++IG+ GVGKS L   F         D   +G +   R + +D +   + + D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 64  -GQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKC 121
             +     +     +     L+VY IT R +F       ++  R     ++ I+L+GNK 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121

Query: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           DL   R VS  EG   A      F+E SA    NV+E F      +  +
Sbjct: 122 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 90.2 bits (222), Expect = 1e-23
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            + +I+G  G GK+ +L +                  G  + T+  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 67  SFRSITRSYYRGAAGALLVYDIT-RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
           S R   R YY      + V D   R       +  +    +       +++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 126 RRAVS---TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
               S      G    K+      + SA     ++EA      T+  +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.2 bits (217), Expect = 1e-22
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 16/164 (9%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
           K + +G    GK+ LL    + R       T+   +      +    IK   +D  G   
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHR 126
            R + + Y+    G + + D    E F+     L+     A   ++  +++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 127 RAVS----------TEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
            + +          T   ++   +  +     S        EAF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            +  ++G    GK+  +      +F      T     G  M  I    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLA- 124
            FRS+   Y RG +  + + D   +E      + L +         + ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 125 --HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160
               + +  +      ++  +     S K   N++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (216), Expect = 6e-22
 Identities = 22/183 (12%), Positives = 48/183 (26%), Gaps = 20/183 (10%)

Query: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62
           Y    + +++G    GKS ++ Q            T G+             +   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIFE----TKFQVDKVNFHMFDV 54

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-----------DARQHANAN 111
            GQ   R      +      + V   +         +                       
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 112 MTIMLIGNKCDLAHRRAVSTEEG-EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           ++++L  NK DL   + ++ +   E +  E         A      +    +    I  +
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 171 IQD 173
              
Sbjct: 175 FLR 177

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (207), Expect = 6e-21
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 20/176 (11%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L K +++G    GKS  L Q    R     D T G+         + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-----------RQHANANMTI 114
            S R      +      L +   +  +                            +N++I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
           +L  NK DL   +       + F +  G        +  + + E F        ++
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ--KFLVECFRGKRRDQQQR 168

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (207), Expect = 7e-21
 Identities = 29/201 (14%), Positives = 56/201 (27%), Gaps = 43/201 (21%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++G    GKS  + Q        V   T G+         D + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIE----YPFDLQSVIFRMVDVGGQR 56

Query: 67  SFRSITRSYYRGAAGALLVYDIT-----------RRETFNHLASWLEDARQHANANMTIM 115
           S R      +      + +  ++                   A +          N +++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 116 LIGNKCDLAHRRAVSTEEGEQFAKEHG--------------------------LIFMEAS 149
           L  NK DL   + + +   + F +  G                          +      
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 150 AKTAQNVEEAFIKTAATIYKK 170
           A   +N+   F     TI + 
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 30/177 (16%), Positives = 47/177 (26%), Gaps = 21/177 (11%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K + +G    GK+ LL    D R                   +    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-EDARQHANANMTIMLIGNKCDLAH 125
             R + ++Y     G + + D    E        L         AN+ I+++GNK D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 126 RRAVS---------------TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
             +                      +      L     S    Q   E F   A  I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.6 bits (182), Expect = 2e-17
 Identities = 28/201 (13%), Positives = 53/201 (26%), Gaps = 46/201 (22%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +++G    GKS ++ Q              G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLAS-----------WLEDARQHANANMTIM 115
           S R      + G    +    ++  +                  +          + +I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 116 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA--------------------------S 149
           L  NK DL   +   +     + +  G    E                            
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 150 AKTAQNVEEAFIKTAATIYKK 170
           A   +NV+  F      I K 
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.4 bits (176), Expect = 2e-16
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 10/173 (5%)

Query: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR 69
           + +G    GK+ L ++    +++     +I        +  +       I     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  SITRSYYRGAAGALLVYDITRRETF-----NHLASWLEDARQHANANMTIMLIGNKCDLA 124
            +   +   A   + V D    +         L   L D+    N + ++++  NK D+A
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN-SPSLLIACNKQDIA 121

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFD 177
             ++      +Q  KE  L  +  +   A +  ++     A + KK ++  F 
Sbjct: 122 MAKSAK-LIQQQLEKE--LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFS 171

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 31/174 (17%), Positives = 48/174 (27%), Gaps = 25/174 (14%)

Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 64
           Y    II G    GK+ LL   T    +P    T+  +        D   +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 65  QESFRSITRSYYRGAAGA-----LLVYDITRRETFNHLASWLED----ARQHANANMTIM 115
               R     Y +  A        +V      +     A +L D            + I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 116 LIGNKCDLAHRRAVSTEEGEQFAKE---------HGLIFMEASAKTAQNVEEAF 160
           +  NK +L   R  S +  +    E           L  +E         E   
Sbjct: 116 IACNKSELFTARPPS-KIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 1/152 (0%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K +I G    GKS LL     +    V D   G         I    + L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
                        A   +          +   +   D  +     +  +       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158
           +A  T E    ++ +G   +  SA+T + V+ 
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 11/156 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----E 66
           ++G    GKS LL   T    +        +     ++ +  +  +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPGIIEGAS 64

Query: 67  SFRSITRSYYRGAAGALL---VYDITRRETFNHLASWLEDARQHANANMTIML-IGNKCD 122
             + +   + R  A   +   V D              E             L   NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158
           L    AV  +         GL  +  SA T   +  
Sbjct: 125 LLEEEAV--KALADALAREGLAVLPVSALTGAGLPA 158

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 23/172 (13%)

Query: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF---------GARMITIDNKPIKLQ 58
           + +I+G   VGKS LL +  ++    V D+               G     +D   ++ +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 59  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIG 118
             D   +      T      A   L V D +                +     +  + + 
Sbjct: 62  TNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 119 NKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK 170
            K +         E   +   +  ++ +  SA   + +E+       +IY++
Sbjct: 121 EKIN-------EEEIKNKLGTDRHMVKI--SALKGEGLEKLE----ESIYRE 159

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 13/172 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
           I+G   VGKS LL      +  P+               +     ++   DT G      
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 71  ITRSYYR------GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124
               +         A    +V+ +  R         +  A +     + I+L+GNK D A
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128

Query: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
                + +   +   E     +  SA   + V E      A +   + +G F
Sbjct: 129 KYPEEAMKAYHELLPEAEPRML--SALDERQVAELK----ADLLALMPEGPF 174

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 21/162 (12%), Positives = 45/162 (27%), Gaps = 10/162 (6%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            +    G +  GKS  L   T+++       T G      +  + +    + +      E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 67  SFRSI-------TRSYYRGAAGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLI 117
               +          Y         +  +              +E A     A + ++  
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEE 158
            +K     R+A      E     +G +     S+   Q V++
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 6/153 (3%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT-----AGQ 65
           I+G   VGKS LL +   ++                 I  +     + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
              R + ++         LV  +     +      + +  +   A + I+ +    ++  
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPV-ILAVNKVDNVQE 128

Query: 126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158
           +  +        ++ + L  +  SA+T  NV+ 
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDT 161

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 10/138 (7%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPI--KLQIWDTAGQESF 68
           + G+TG GKS  +        +       GV            P    +  WD  G  S 
Sbjct: 61  VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 120

Query: 69  RSITRSY---YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125
                +Y    +       +     R   N +      +            +  K D   
Sbjct: 121 NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE----FYFVRTKVDS-D 175

Query: 126 RRAVSTEEGEQFAKEHGL 143
               +  E + F KE  L
Sbjct: 176 ITNEADGEPQTFDKEKVL 193

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 30/165 (18%), Positives = 44/165 (26%), Gaps = 14/165 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
            K  I+G   VGKS L     +K    V     G         +     K    DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 67  SFRSITR--------SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIG 118
               +               +     V  I    T          A          +++ 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 119 NKCDLAHRRAVSTEEGEQFAKEH-----GLIFMEASAKTAQNVEE 158
           NK DL   R    +E  +  +E          +  SA    N++ 
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 14/165 (8%)

Query: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-- 64
              +++G  GVGKS  +     +R   +            M++       L I DT G  
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-SEGPRPVMVSRSRAGFTLNIIDTPGLI 91

Query: 65  -----QESFRSITRSYY--RGAAGALLVYDITRRETFNHLASWLEDARQH--ANANMTIM 115
                 +   +I +S+   +     L V  +      N      +              +
Sbjct: 92  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 116 LIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKTAQNVEE 158
           +       +    +  +E      E    ++   AS K      +
Sbjct: 152 VALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASD 196

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 17/161 (10%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-MITIDNKPIKLQIWDTAG----- 64
           ++G   VGKS LL   +  + +        +      + T D +     + D  G     
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSF--VMADLPGLIEGA 63

Query: 65  -------QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 117
                   +  R I R+        +   +           +               +++
Sbjct: 64  HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123

Query: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158
            NK D+           E+   ++ +  +  SA T + + E
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPI--SAVTREGLRE 162

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 16/162 (9%), Positives = 49/162 (30%), Gaps = 9/162 (5%)

Query: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65
           L +  + G + VGKS  +    +++         G         I+++   + +      
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLAS------WLEDARQHANANMTIMLIGN 119
           +  +S   ++ R     +   +  +                ++         + +++I  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 120 KCDLAHRRAVST---EEGEQFAKEHGLIFMEASAKTAQNVEE 158
           K D   +           +    +     +  S++T +  +E
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 28/186 (15%)

Query: 10  IIIGDTGVGKSCLLLQFTDKR------------------FQPVHDLTIGVEFGARMITID 51
           I  G + VGKS L+ + T K+                           G  F   +    
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 52  NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN 111
            + IK +I      E              G      I R E    +   +E  +     +
Sbjct: 64  QERIKDEIVHF--IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 112 MTIMLIGNKCDLAHRRAVS----TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
           +  ++  NK D             E+ E    E   +F+  SAK   N+E         I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK----NRI 177

Query: 168 YKKIQD 173
           ++ I++
Sbjct: 178 FEVIRE 183

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 8/171 (4%)

Query: 11  IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
           I+G   VGKS L  +   K+   V D   GV       T++      ++ DT G      
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63

Query: 71  ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 130
              S         ++ +             +    +     +    +           + 
Sbjct: 64  DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123

Query: 131 TEEGEQFAKEHGLIFMEA---SAKTAQNVEEAFIKTAATIYKKIQDGVFDV 178
             E E   + + L F E    SA+   N++        TI KK+++   D+
Sbjct: 124 EFEREVKPELYSLGFGEPIPVSAEHNINLDTML----ETIIKKLEEKGLDL 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.77
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.55
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.55
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.42
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.31
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.28
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.24
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.12
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.99
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.66
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.53
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.39
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.33
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.3
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.06
d1okkd2	207	GTPase domain of the signal recognition particle r	97.94
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.9
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.86
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.71
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.62
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.59
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.58
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.48
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.44
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.4
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.39
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.39
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.36
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.34
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.33
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.32
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.32
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.25
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.23
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.22
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.18
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.18
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.14
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.12
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.12
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.11
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.11
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.1
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.1
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.09
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.08
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.07
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.05
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.04
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.03
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.02
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.01
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.01
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.01
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.99
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.99
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.98
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.97
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.96
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.95
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.94
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.93
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.92
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.89
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.83
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.82
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.81
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.81
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.79
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.78
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.75
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.74
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.73
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.7
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.67
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.55
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.53
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.44
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.4
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.39
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.38
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.25
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.23
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.16
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.12
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.07
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.03
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.98
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.96
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.94
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.94
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.9
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.83
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.82
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.78
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.74
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.67
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.66
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.65
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.64
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.64
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.62
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.51
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.4
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.38
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.36
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.34
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.24
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.22
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.16
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.1
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.07
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.05
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.05
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.04
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.04
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.0
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.92
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.87
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.77
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.76
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.7
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.64
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.64
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.42
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.28
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.28
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.22
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.14
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.01
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.87
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.87
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.51
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.46
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.43
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.38
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.35
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.31
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.24
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.16
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.13
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.04
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.96
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.42
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.41
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.09
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.98
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.92
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.81
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.99
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.14
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.57
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.19
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.14
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.53
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.37
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.85
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	86.67
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.61
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.13
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	84.95
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.55
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.33
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.89
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.58
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.46
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.37
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.24
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.23
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.83
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	82.49
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	81.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.98

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-38  Score=225.94  Aligned_cols=168  Identities=43%  Similarity=0.815  Sum_probs=158.2

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|++.+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+......+++.+||+||++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            48899999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||+++++++..+..|+...........|+++++||.|+.+...+..++++.+++.++++++++||++|.||+++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999998887777667899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          162 KTAATIYK  169 (211)
Q Consensus       162 ~l~~~~~~  169 (211)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-38  Score=224.73  Aligned_cols=170  Identities=45%  Similarity=0.816  Sum_probs=160.2

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      .|++.+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+++.+||++|++.+..++..+++.+++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            47899999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +++|||++++.+++.+..|+..+........|+++|+||+|+.+...+..++++.+++.++++++++||++|.||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999988777767899999999999988778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          162 KTAATIYKKI  171 (211)
Q Consensus       162 ~l~~~~~~~~  171 (211)
                      +|++++.+..
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999887653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=224.17  Aligned_cols=173  Identities=58%  Similarity=0.967  Sum_probs=163.8

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +||+.+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+..++....+.+||++|++.+..++..+++.+|+
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            58999999999999999999999999999999999998999888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||+++++++..+..|+..+......+.|+++++||+|+....+....+...+++..+++++++||++|.|++++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            99999999999999999999998888778899999999999988788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 028237          162 KTAATIYKKIQDG  174 (211)
Q Consensus       162 ~l~~~~~~~~~~~  174 (211)
                      ++++++.+++..+
T Consensus       161 ~l~~~i~~~~~~~  173 (174)
T d2bmea1         161 QCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=220.16  Aligned_cols=165  Identities=66%  Similarity=1.087  Sum_probs=156.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ||+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            68999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||+++.++++.+..|+..+........|+++++||+|+.+......++++.+++..+++++++||++|.||+++|.+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888777778999999999999887788889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |++++
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=218.54  Aligned_cols=173  Identities=53%  Similarity=0.880  Sum_probs=159.0

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      +|+.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            68899999999999999999999999999999988888899899999999999999999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      |+|||++++.++..+..|+..+..+...+.|+++|+||+|+.+......+....+....+.+++++||++|.|++++|.+
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998888788999999999999877777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 028237          163 TAATIYKKIQDGV  175 (211)
Q Consensus       163 l~~~~~~~~~~~~  175 (211)
                      |++++.+.....+
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhhcc
Confidence            9999988776543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=220.56  Aligned_cols=165  Identities=35%  Similarity=0.697  Sum_probs=149.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+.......+..++..+.+.+||++|+..+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |||++++++++.+..|+..+........|+++++||+|+.+.+.+..++++.++++++++++++||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888777667889999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +++.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-37  Score=223.12  Aligned_cols=176  Identities=44%  Similarity=0.829  Sum_probs=164.0

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      +|++.+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            58999999999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||+++++++..+..|+..+........|+++++||+|+.+......++...+++..++.++++||++|.|+.++|.
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999988877778999999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCccc
Q 028237          162 KTAATIYKKIQDGVFD  177 (211)
Q Consensus       162 ~l~~~~~~~~~~~~~~  177 (211)
                      +|++++.+........
T Consensus       162 ~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         162 TMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhhhcccC
Confidence            9999998776554433

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-37  Score=218.58  Aligned_cols=163  Identities=36%  Similarity=0.616  Sum_probs=153.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||++++.+++.+..|+..+..+.. +.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999998876654 7999999999999888888899999999999999999999999999999999999


Q ss_pred             HHHH
Q 028237          166 TIYK  169 (211)
Q Consensus       166 ~~~~  169 (211)
                      ++.+
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8863

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=217.23  Aligned_cols=170  Identities=86%  Similarity=1.302  Sum_probs=155.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      |.+||+|+|.+|||||||+++|.++.+...+.++.+.+.........+..+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            57899999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      |||++++.+++.+..|+..+......+.|++||+||+|+...+....++...+++.++++++++||++|.||+++|..|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999998887777899999999999987778889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 028237          165 ATIYKKIQDG  174 (211)
Q Consensus       165 ~~~~~~~~~~  174 (211)
                      +.+.++.+++
T Consensus       162 ~~i~~~~~~~  171 (173)
T d2a5ja1         162 KEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcc
Confidence            9999887654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=216.43  Aligned_cols=165  Identities=26%  Similarity=0.369  Sum_probs=135.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|.+..+... .++ ....+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            47999999999999999999998765443 333 4444566788899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+++...+++.+++.++++++++||++|.|++++|..|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999998876654 5789999999999988778889999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 028237          165 ATIYKKIQ  172 (211)
Q Consensus       165 ~~~~~~~~  172 (211)
                      +.+..+..
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99877654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=216.74  Aligned_cols=167  Identities=34%  Similarity=0.538  Sum_probs=152.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|||||||+++|..+.+...+.++ ..+.....+.+++..+.+.+||++|.+.+..++..+++.+|++|
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT-IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT-CCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccc-cccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            45799999999999999999999999998888887 45555678889999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+....++++.+++..+++++++||++|.||+++|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  162 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  162 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            9999999999999999999886654 368899999999999887788899999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          163 TAATIYKKI  171 (211)
Q Consensus       163 l~~~~~~~~  171 (211)
                      |++.+.+..
T Consensus       163 l~~~i~k~~  171 (173)
T d2fn4a1         163 LVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999987754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-37  Score=220.46  Aligned_cols=171  Identities=50%  Similarity=0.922  Sum_probs=131.3

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   81 (211)
                      ++|+.+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            58999999999999999999999999999988888898999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 028237           82 ALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (211)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~  161 (211)
                      +|+|||++++.+++.+..|+..+......+.|+++++||.|.........+++..++...+++++++||++|.||.++|.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998777778899999999999988777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 028237          162 KTAATIYKKIQ  172 (211)
Q Consensus       162 ~l~~~~~~~~~  172 (211)
                      +|++.+.++..
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999987754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.6e-36  Score=215.73  Aligned_cols=163  Identities=35%  Similarity=0.564  Sum_probs=147.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            57999999999999999999999999999999877766 45677899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.||+++|.+|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999887654 36899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          165 ATIYK  169 (211)
Q Consensus       165 ~~~~~  169 (211)
                      +++.+
T Consensus       163 ~~i~~  167 (168)
T d1u8za_         163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            98754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=214.41  Aligned_cols=161  Identities=43%  Similarity=0.776  Sum_probs=152.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999999999888988888888899999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+......++++.+++.++++++++||++|.||+++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777789999999999998877888899999999999999999999999999999999986


Q ss_pred             H
Q 028237          167 I  167 (211)
Q Consensus       167 ~  167 (211)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-35  Score=211.95  Aligned_cols=163  Identities=34%  Similarity=0.582  Sum_probs=149.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999999988888866554 56678899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~-~v~~~~~~l  163 (211)
                      ||++++.+++.+..|+..+.+... .+.|+++++||+|+.+.+.+..++++.+++.++++++++||+++. ||+++|..|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            999999999999999998876643 689999999999998888889999999999999999999999886 999999999


Q ss_pred             HHHHHH
Q 028237          164 AATIYK  169 (211)
Q Consensus       164 ~~~~~~  169 (211)
                      ++++.+
T Consensus       163 ~~~i~~  168 (169)
T d1x1ra1         163 VRVIRQ  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=219.56  Aligned_cols=172  Identities=38%  Similarity=0.727  Sum_probs=154.5

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECC----------EEEEEEEEeCCCcchhhhh
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----------KPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~   71 (211)
                      .|++.+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++          ..+++.+||++|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            478999999999999999999999999999888888878777776665543          3478999999999999999


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      +..+++.+|++|+|||++++.+++.+..|+..+..+.. ...|+++|+||.|+.+.+.+..+++.+++++++++++++||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999887765543 57889999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhc
Q 028237          151 KTAQNVEEAFIKTAATIYKKIQD  173 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~~~~~  173 (211)
                      ++|.||+++|++|++.+.++..+
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-35  Score=210.73  Aligned_cols=162  Identities=41%  Similarity=0.757  Sum_probs=153.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+..........+.....+.+||++|++.+..++..+++.+|++|+|
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   83 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIV   83 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEE
Confidence            48999999999999999999999999999999999999888898999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||++++++++.+..|+..+........|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.||+++|.+|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~  163 (167)
T d1z0ja1          84 YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR  163 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             eeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998888777789999999999999887888999999999999999999999999999999999988


Q ss_pred             HH
Q 028237          166 TI  167 (211)
Q Consensus       166 ~~  167 (211)
                      ++
T Consensus       164 ~i  165 (167)
T d1z0ja1         164 RI  165 (167)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-36  Score=212.64  Aligned_cols=163  Identities=32%  Similarity=0.471  Sum_probs=150.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            357999999999999999999999999988888877775 5677889999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++++++.+..|+..+..+. ..+.|+++++||+|+...+.+..+++++++++++++|+++||++|.||+++|..|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999999998887655 4689999999999998877889999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          164 AATIY  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      ++++.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98775

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=211.51  Aligned_cols=167  Identities=46%  Similarity=0.822  Sum_probs=146.1

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      -||..+||+|+|.++||||||+++|+.+.+... +.++.+.+.....+..++..+++.+|||+|++.+..++..+++++|
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            388999999999999999999999999887644 4555678888888999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ++++|||++++.++..+..|+..+........|+++++||.|..+...+..+++..+++.++++++++||++|.||+++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999988877777789999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028237          161 IKTAATIY  168 (211)
Q Consensus       161 ~~l~~~~~  168 (211)
                      .+|++++.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=211.15  Aligned_cols=164  Identities=37%  Similarity=0.600  Sum_probs=145.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+ ......+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            37999999999999999999999999888888855 55577788899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++++++.+..|+..+..... ...|++||+||+|+.+.+.+..++++.+++.++++++++||++|.||+++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999987765543 6899999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 028237          165 ATIYKK  170 (211)
Q Consensus       165 ~~~~~~  170 (211)
                      +.+.+.
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=209.83  Aligned_cols=163  Identities=42%  Similarity=0.785  Sum_probs=154.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+.++...........+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            47999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||+++.++++.+..|+..+......+.|+++|+||+|+.+++.+..++++.+++.++++++++||++|.||+++|..|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988877789999999999999888889999999999999999999999999999999999988


Q ss_pred             HHH
Q 028237          166 TIY  168 (211)
Q Consensus       166 ~~~  168 (211)
                      ++.
T Consensus       166 ~i~  168 (170)
T d1r2qa_         166 KLP  168 (170)
T ss_dssp             TSC
T ss_pred             HHh
Confidence            653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=209.91  Aligned_cols=161  Identities=24%  Similarity=0.436  Sum_probs=142.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+.. ......+.+..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999999988887644 466677888899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CcEEEEecCC
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHG-LIFMEASAKT  152 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~  152 (211)
                      ||++++++++.+..|+.........+.|+++|+||+|+.+            ...+..++++.+++..+ ++++++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998866655555556899999999999853            24577899999999865 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATI  167 (211)
Q Consensus       153 g~~v~~~~~~l~~~~  167 (211)
                      |.||+++|+.+++.+
T Consensus       162 ~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         162 QKGLKNVFDEAILAA  176 (191)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999988755

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=207.64  Aligned_cols=164  Identities=38%  Similarity=0.534  Sum_probs=145.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|..+.+...+.+|.+..+. ..+..++..+.+.+||++|.+.+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            489999999999999999999999999999999887764 445678889999999999998774 466788999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~-~v~~~~~~l  163 (211)
                      ||++++.+++.+..|+........ .+.|+++|+||+|+.+.+.+..++++.+++.++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999998776655443 689999999999998777889999999999999999999999998 599999999


Q ss_pred             HHHHHHHH
Q 028237          164 AATIYKKI  171 (211)
Q Consensus       164 ~~~~~~~~  171 (211)
                      ++++.++.
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=212.39  Aligned_cols=161  Identities=32%  Similarity=0.482  Sum_probs=146.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|+.+.+...+.+|.+..+ .....+++..+.+.+||++|.+.+...+..+++.+|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47999999999999999999999999888888877555 45567889999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      ||++++++++.+..|+..+.....  .+.|+++|+||+|+.+.+++..++++++++.++++++++||++|.||+++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999988866543  678999999999998777888999999999999999999999999999999999


Q ss_pred             HHHH
Q 028237          164 AATI  167 (211)
Q Consensus       164 ~~~~  167 (211)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=207.59  Aligned_cols=162  Identities=40%  Similarity=0.762  Sum_probs=151.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+.++....+...+..+.+.+||++|.+.+..++..++..+|++|+|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      ||++++.+++.+..|+..+........|+++++||+|+.+   .+.+..++++.++++.+++|+++||++|.||+++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888777777899999999999854   3567889999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          163 TAATI  167 (211)
Q Consensus       163 l~~~~  167 (211)
                      |+++|
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            88754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-35  Score=207.94  Aligned_cols=162  Identities=35%  Similarity=0.580  Sum_probs=148.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            38999999999999999999999999988888866 45567778899999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~  164 (211)
                      ||++++.++..+..|+..+..... .+.|++||+||+|+.+.+....++++.+++.++++++++||++|.||+++|..|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            999999999999999988876544 6899999999999988778888999999999999999999999999999999999


Q ss_pred             HHHH
Q 028237          165 ATIY  168 (211)
Q Consensus       165 ~~~~  168 (211)
                      +++.
T Consensus       162 ~~i~  165 (167)
T d1kaoa_         162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=210.50  Aligned_cols=164  Identities=26%  Similarity=0.449  Sum_probs=144.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|||||||+++|+.+.+...+.+|.+. .....+...+..+.+.+||++|++.+..++..+++.+|+++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            46889999999999999999999999999988888664 45667778888999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CcEEEEec
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHG-LIFMEASA  150 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa  150 (211)
                      +|||++++++++.+..|+....+....+.|+++|+||+|+.+            .+.+..++++++++.++ +.|++|||
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA  165 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  165 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence            999999999999887665555444456899999999999864            34678889999999987 68999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~  168 (211)
                      ++|.||+++|+.++++++
T Consensus       166 k~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         166 LTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=207.72  Aligned_cols=163  Identities=31%  Similarity=0.480  Sum_probs=144.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      ..||+|+|.+|+|||||+++|..+.+...+.++.+ ........+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999998888866 44466678889999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      ||++++++++.+..|+.........+.|++|++||+|+.+.            +.+..++++.+++..+. +|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999888766655555568999999999998542            45778889999999884 799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATIYK  169 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~~  169 (211)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-34  Score=206.05  Aligned_cols=164  Identities=48%  Similarity=0.895  Sum_probs=146.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+++.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      ||++++.+++.+..|+..+........|++++++|.|+.. +....++++.+++.++++++++||++|.||.++|.+|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999998888887777899999999999854 456788999999999999999999999999999999999


Q ss_pred             HHHHH
Q 028237          166 TIYKK  170 (211)
Q Consensus       166 ~~~~~  170 (211)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=205.11  Aligned_cols=162  Identities=35%  Similarity=0.591  Sum_probs=147.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            48999999999999999999999999998888877555 55667888899999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++...+++.. +++++++||++|.||+++|.+|
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999988876543 68999999999999888888889999998874 7899999999999999999999


Q ss_pred             HHHHH
Q 028237          164 AATIY  168 (211)
Q Consensus       164 ~~~~~  168 (211)
                      ++++.
T Consensus       162 ~~~i~  166 (167)
T d1c1ya_         162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=212.05  Aligned_cols=163  Identities=31%  Similarity=0.574  Sum_probs=142.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..+||+|+|.+|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|+..+..++..+++++|+++
T Consensus         1 ~~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1i2ma_           1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   80 (170)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchh
Confidence            35689999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      +|||++++++++.+..|+..+..+. .+.|+++|+||+|+.+....  ++...++...+++++++||++|.||+++|.+|
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             hccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887665 48999999999999665433  34567788889999999999999999999999


Q ss_pred             HHHHHH
Q 028237          164 AATIYK  169 (211)
Q Consensus       164 ~~~~~~  169 (211)
                      ++.+..
T Consensus       158 ~~~l~~  163 (170)
T d1i2ma_         158 ARKLIG  163 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            998863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=203.03  Aligned_cols=165  Identities=48%  Similarity=0.835  Sum_probs=152.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|.+|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.+..++..++..+|++|+
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999999999998999988899999999999999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l  163 (211)
                      |||++++.+++.+..|+..+..... ...|+++++||.|..+ ..+...+++.+++.++++++++||++|.|++++|+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998866554 5789999999999754 5677889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 028237          164 AATIYKK  170 (211)
Q Consensus       164 ~~~~~~~  170 (211)
                      ++++.+.
T Consensus       165 ~~~l~~~  171 (177)
T d1x3sa1         165 VEKIIQT  171 (177)
T ss_dssp             HHHHHTS
T ss_pred             HHHHccC
Confidence            9988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=200.88  Aligned_cols=161  Identities=34%  Similarity=0.605  Sum_probs=146.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|.+|||||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+...+..+++.++++++||
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~   82 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccceee
Confidence            899999999999999999999999999888887776644 4667888999999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~  165 (211)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+.+ +....++++.+++.++++++++||++|.||+++|.+|++
T Consensus        83 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~  161 (166)
T d1ctqa_          83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            99999999999999999877654 5799999999999864 456788899999999999999999999999999999999


Q ss_pred             HHHH
Q 028237          166 TIYK  169 (211)
Q Consensus       166 ~~~~  169 (211)
                      ++.+
T Consensus       162 ~i~~  165 (166)
T d1ctqa_         162 EIRQ  165 (166)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-33  Score=200.46  Aligned_cols=160  Identities=42%  Similarity=0.796  Sum_probs=146.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh-hhHHhhcCCcEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGAL   83 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i   83 (211)
                      ..+||+|+|.+|||||||+++|..+.+...+.++.+.........+......+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            368999999999999999999999999999999989899888999999999999999999887765 5778999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC---CCCHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKT---AQNVEEA  159 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---g~~v~~~  159 (211)
                      +|||++++++++.+..|+..+..+.. .+.|++||+||+|+.+.+++..++++++++.++++++++||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            99999999999999999999877654 6899999999999988888899999999999999999999987   5699999


Q ss_pred             HHHHH
Q 028237          160 FIKTA  164 (211)
Q Consensus       160 ~~~l~  164 (211)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99873

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=201.35  Aligned_cols=166  Identities=25%  Similarity=0.361  Sum_probs=141.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-hhhhHHhhcCCcEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-RSITRSYYRGAAGAL   83 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~i   83 (211)
                      .+||+|+|.+|+|||||+++|.+..+.. ...++.+.+.....+.+++..+.+.+||+++.... ..++..+++.+|++|
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i   82 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL   82 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence            4899999999999999999999876653 34455577778888899999999999998754322 226778899999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~  162 (211)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.+++.++++++++||++|.|++++|..
T Consensus        83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~  162 (172)
T d2g3ya1          83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEG  162 (172)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHH
Confidence            9999999999999999998886654 368999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028237          163 TAATIYKKI  171 (211)
Q Consensus       163 l~~~~~~~~  171 (211)
                      |++++..+.
T Consensus       163 l~~~i~~rr  171 (172)
T d2g3ya1         163 IVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHcc
Confidence            999987653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-33  Score=198.21  Aligned_cols=164  Identities=37%  Similarity=0.678  Sum_probs=146.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      +..+||+|+|.+|||||||+++|..+.+...+.++.+...........+..+.+.+||++|...+...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            45789999999999999999999999999999999899998888999999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHH
Q 028237           84 LVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEASAKTAQNVEE  158 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~g~~v~~  158 (211)
                      ++||.+++.+++.+..|+..+.....    .+.|+++|+||+|+.+ +.+..++++.++++. +++++++||++|.||++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999988765442    4789999999999965 567888999999886 48999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          159 AFIKTAATIY  168 (211)
Q Consensus       159 ~~~~l~~~~~  168 (211)
                      +|++|+++++
T Consensus       163 ~f~~l~~~il  172 (174)
T d1wmsa_         163 AFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999886

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-33  Score=202.22  Aligned_cols=166  Identities=36%  Similarity=0.673  Sum_probs=133.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      .+||+|+|.+|||||||+++|.++.+...+.++.+........... .....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            6899999999999999999999999988888887777666665543 445788999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCC-CCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~-~~~~~~sa~~g~~v~~  158 (211)
                      |||++++.+++.+..|+..+..+..    .+.|+++++||+|+.+. +.+..++++++++..+ ++++++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999988865432    47899999999999764 3467888999999886 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028237          159 AFIKTAATIYKKI  171 (211)
Q Consensus       159 ~~~~l~~~~~~~~  171 (211)
                      +|.+|++.+.++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988774

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-33  Score=201.18  Aligned_cols=164  Identities=27%  Similarity=0.482  Sum_probs=142.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ...+||+|+|.+|||||||+++|+.+.+...+.++.+.. ....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            467999999999999999999999999999988886644 4566778999999999999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEec
Q 028237           84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEASA  150 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa  150 (211)
                      +|||++++++++.+..|+.........+.|++||+||+|+.+.            ......+...+++.++ ++|+++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999987555444444568999999999997432            3456778888998887 78999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 028237          151 KTAQNVEEAFIKTAATIY  168 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~  168 (211)
                      ++|.||+++|..|++.++
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.3e-33  Score=201.20  Aligned_cols=168  Identities=39%  Similarity=0.685  Sum_probs=150.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      ||++++.+++.+..|+..+..+..    .+.|+++|+||+|+.+. .+..++...++. ..+++++++||++|.||.++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988866542    36899999999998654 466667776765 457899999999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 028237          161 IKTAATIYKKIQDG  174 (211)
Q Consensus       161 ~~l~~~~~~~~~~~  174 (211)
                      ++|++.+.++....
T Consensus       161 ~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         161 QTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999988876543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-33  Score=200.26  Aligned_cols=163  Identities=27%  Similarity=0.434  Sum_probs=143.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            589999999999999999999999999888888654 4456677888999999999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEecCC
Q 028237           86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHGL-IFMEASAKT  152 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~  152 (211)
                      ||++++++++.+..|+.........+.|+++|+||+|+..            ...+..++...+++..+. +|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998876665555556899999999999853            345788999999999875 799999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q 028237          153 AQN-VEEAFIKTAATIYK  169 (211)
Q Consensus       153 g~~-v~~~~~~l~~~~~~  169 (211)
                      |.+ ++++|+.+++.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            984 99999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-30  Score=186.61  Aligned_cols=161  Identities=16%  Similarity=0.296  Sum_probs=135.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|.++.+... .++.+.. ....+.+++..+.+.+||++|+..+     .|++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            58999999999999999999999988654 3443444 4677889999999999999998754     378899999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCC--CCCCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAH--RRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~sa~~g~~v~~~  159 (211)
                      ||++++.+++.+..|+..+.....   ...|+++|+||.|+..  .+.+..++++.++.. ++++|+++||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            999999999999999888865542   5679999999888743  455678888888655 5788999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 028237          160 FIKTAATIYKKIQD  173 (211)
Q Consensus       160 ~~~l~~~~~~~~~~  173 (211)
                      |..+++++....++
T Consensus       158 F~~l~~~i~~~~~~  171 (175)
T d2bmja1         158 FQEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=5.6e-32  Score=192.25  Aligned_cols=155  Identities=19%  Similarity=0.323  Sum_probs=128.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|++|||||||+++|..+.+...+.+|.+.++..  +...  .+.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            4899999999999999999999999988888887766543  3344  48899999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ||++++++++.+..|+..+.... ..+.|+++++||.|+.+.  ....++.+.     +...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh--hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            99999999999988887765543 368999999999998653  233333222     2233567999999999999999


Q ss_pred             HHHHHHH
Q 028237          160 FIKTAAT  166 (211)
Q Consensus       160 ~~~l~~~  166 (211)
                      |+||++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.3e-30  Score=185.21  Aligned_cols=157  Identities=23%  Similarity=0.344  Sum_probs=123.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+|+|.+|||||||+++|.+..+. ...++.+...  ..+...  .+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            479999999999999999999987663 4455544443  334444  48899999999999999999999999999999


Q ss_pred             EECCCHhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHH
Q 028237           86 YDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEA  159 (211)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~~  159 (211)
                      ||+++..++.....++..+... ...+.|++||+||+|+.+..  ...+.....     ...+++++++||++|.|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            9999999998888776655443 33689999999999996533  333333322     222457999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          160 FIKTAATIYK  169 (211)
Q Consensus       160 ~~~l~~~~~~  169 (211)
                      |+||++++.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=3e-30  Score=185.14  Aligned_cols=157  Identities=20%  Similarity=0.324  Sum_probs=123.8

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      .+..+||+|+|.+|||||||+++|.++.+.... ++.+.+  ...+...  .+.+.+||++|.+.+...+..+++.+|++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~--~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeee--EEEeccC--CeeEeEeeccccccchhHHHHHhhcccee
Confidence            456799999999999999999999988774332 222333  3334444  47899999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEecCCCCCH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~g~~v  156 (211)
                      |+|||++++.++..+..++..+..... .+.|++|++||+|+.+.  .......+.     +...+++++++||++|.|+
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc--ccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            999999999999999888777654443 58999999999999653  233333322     2233567999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          157 EEAFIKTAAT  166 (211)
Q Consensus       157 ~~~~~~l~~~  166 (211)
                      +++|+||+++
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=3e-30  Score=186.25  Aligned_cols=162  Identities=22%  Similarity=0.342  Sum_probs=123.5

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      ....+||+++|.+|||||||+++|.+..+.. ..++.+...  ..+...  .+++.+||++|++.+..++..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE--EEEeeC--CEEEEEEecccccccchhHHhhhccceeE
Confidence            4567999999999999999999998876643 334444433  223333  48899999999999999999999999999


Q ss_pred             EEEEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEecCCCCCH
Q 028237           83 LLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~g~~v  156 (211)
                      ++|||++++.++.....|+..+..... .+.|++|++||+|+.+.  ....++...     +...+++++++||++|.|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999988888766544333 57999999999998542  334444332     2334567999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028237          157 EEAFIKTAATIYKKI  171 (211)
Q Consensus       157 ~~~~~~l~~~~~~~~  171 (211)
                      .++|++|++.+.++.
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T d1moza_         167 TEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999987753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=5.7e-30  Score=183.32  Aligned_cols=156  Identities=20%  Similarity=0.361  Sum_probs=121.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+++|.+|||||||+++|..+.+... .++.+...    .......+.+.+||+||...+...+..+++.++++|+
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            458999999999999999999997765432 22223332    2223345899999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQ-----FAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      |||+++.+++..+..|+....... ....|+++++||+|+.+.  ....++..     .+...++.++++||++|+||.|
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            999999999999988877765443 368999999999999653  23333332     2233356799999999999999


Q ss_pred             HHHHHHHHH
Q 028237          159 AFIKTAATI  167 (211)
Q Consensus       159 ~~~~l~~~~  167 (211)
                      +|+||.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=2.8e-28  Score=171.74  Aligned_cols=154  Identities=18%  Similarity=0.296  Sum_probs=123.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEE
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   86 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   86 (211)
                      +||+|+|++|||||||+++|.++.+...........     .......+.+.+||++|...+...+..++..+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE-----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE-----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            699999999999999999999988766554442222     233445689999999999999999999999999999999


Q ss_pred             ECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHH-----HHHHHcCCcEEEEecCCCCCHHHHH
Q 028237           87 DITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGE-----QFAKEHGLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus        87 d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~sa~~g~~v~~~~  160 (211)
                      |..++.++..+..|+..+..... ...|+++++||.|+.+..  ...++.     .+++..+++++++||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999998888777755443 678999999999986532  333332     2334456789999999999999999


Q ss_pred             HHHHHHH
Q 028237          161 IKTAATI  167 (211)
Q Consensus       161 ~~l~~~~  167 (211)
                      ++|.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=157.32  Aligned_cols=160  Identities=23%  Similarity=0.344  Sum_probs=122.7

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      |+++  +||+++|.+|||||||+++|.++.+.... ++.+...  .....+  .+.+.+||.++...+...+..++...+
T Consensus         2 m~ke--~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (169)
T d1upta_           2 MTRE--MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTD   74 (169)
T ss_dssp             CSSC--EEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCS
T ss_pred             CCcc--eEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--eeeccC--ceEEEEeeccccccccccchhhhhhhh
Confidence            6665  79999999999999999999998876433 3333322  223333  478899999999999999999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHH-HhcCCCCcEEEEEecCCCCCCCCCCHHHHH-----HHHHHcCCcEEEEecCCCC
Q 028237           81 GALLVYDITRRETFNHLASWLEDAR-QHANANMTIMLIGNKCDLAHRRAVSTEEGE-----QFAKEHGLIFMEASAKTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~sa~~g~  154 (211)
                      ++++++|+.+..+......++.... .......|+++++||.|+.+..  ...++.     .++...+++++++||++|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~  152 (169)
T d1upta_          75 AVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGT  152 (169)
T ss_dssp             EEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred             hhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc--cHHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            9999999998888777766544443 3334688999999999996532  232322     2344456789999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYK  169 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~  169 (211)
                      ||+++|++|++.+.+
T Consensus       153 gv~e~~~~l~~~l~~  167 (169)
T d1upta_         153 GLDEAMEWLVETLKS  167 (169)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=5.8e-25  Score=157.28  Aligned_cols=156  Identities=25%  Similarity=0.355  Sum_probs=116.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   84 (211)
                      ..+||+|+|.+|||||||+++|.+..+....... +...  ......  ...+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~-~~~~--~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-GSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-CSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc-ceeE--EEEeec--ceEEEEeccccccccccchhhhhccceeeee
Confidence            4589999999999999999999998775433222 2222  222233  4789999999999999999999999999999


Q ss_pred             EEECCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHH
Q 028237           85 VYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~g~~v~~  158 (211)
                      ++|.++..+++....+...+..... .+.|+++++||+|+...  ....++....     ...+++++++||++|+|+++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999998887776655544333 68999999999998653  3344444433     22346799999999999999


Q ss_pred             HHHHHHHHH
Q 028237          159 AFIKTAATI  167 (211)
Q Consensus       159 ~~~~l~~~~  167 (211)
                      +|++|++++
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.8e-24  Score=150.70  Aligned_cols=151  Identities=21%  Similarity=0.273  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD   87 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   87 (211)
                      ||+++|++|||||||+++|.++.+.. ..++.+.+.    .........+.+||+++...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS----EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE----EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE----EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 344444443    2333345778899999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHH------------HcCCcEEEEecCCCC
Q 028237           88 ITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK------------EHGLIFMEASAKTAQ  154 (211)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~sa~~g~  154 (211)
                      ..+...+.....++........ .+.|+++++||.|+..  .....++.....            ..+++++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999988888877766655443 6899999999999854  334444433221            223469999999999


Q ss_pred             CHHHHHHHHHH
Q 028237          155 NVEEAFIKTAA  165 (211)
Q Consensus       155 ~v~~~~~~l~~  165 (211)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.1e-25  Score=162.44  Aligned_cols=160  Identities=17%  Similarity=0.150  Sum_probs=124.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|..|||||||+++|....+.  +.||.|....    .+....+.+.+||++|++.+...|..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            489999999999999999999888763  5677776652    3334558899999999999999999999999999999


Q ss_pred             EECCCHh-----------hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----------------CCCCHHHHHHHH
Q 028237           86 YDITRRE-----------TFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----------------RAVSTEEGEQFA  138 (211)
Q Consensus        86 ~d~~~~~-----------~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~  138 (211)
                      +|..+..           ..+....|...+......+.|+++++||.|+.+.                ...+......+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9987753           3455666777776666679999999999997321                122333333332


Q ss_pred             HH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          139 KE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       139 ~~----------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      ..          ..+.++++||++|.||.++|+.|.+.|.++.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            21          1244789999999999999999999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=6e-25  Score=159.35  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=114.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|..|||||||+++|....++..     +..  .  ..+....+.+.+||++|++.+..++..|++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~~--~--~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GIV--E--THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SEE--E--EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cEE--E--EEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            58999999999999999999987765432     222  2  23333458899999999999999999999999999999


Q ss_pred             EECCCHhhH-----------HHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---------------CCCCHHHHHH---
Q 028237           86 YDITRRETF-----------NHLASWLEDARQHANANMTIMLIGNKCDLAHR---------------RAVSTEEGEQ---  136 (211)
Q Consensus        86 ~d~~~~~~~-----------~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~---  136 (211)
                      +|+++.+++           +....|...+......+.|+++++||.|+.+.               ......+...   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887654           23334545554444578999999999996221               1122222221   


Q ss_pred             --HHHH------cCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028237          137 --FAKE------HGLIFMEASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       137 --~~~~------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                        +...      ..+.+++|||+++.||+++|+.+.+.++++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              1111      134577899999999999999999888765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.8e-24  Score=154.02  Aligned_cols=156  Identities=19%  Similarity=0.132  Sum_probs=106.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--------hhhhHHh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RSITRSY   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~   75 (211)
                      +.-.|+|+|.+|+|||||+|+|++..... ...+..+...........+  ..+.+|||||....        ......+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            34479999999999999999999876533 2233223333333344444  68899999996433        2233445


Q ss_pred             hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCCC
Q 028237           76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQ  154 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g~  154 (211)
                      ++.+|++|+|+|++++..... ..|...+.. ...+.|+++|+||+|+....   .+....+.+..+ ..++++||++|.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            789999999999987654332 333444433 33478999999999985421   233344444444 468899999999


Q ss_pred             CHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATI  167 (211)
Q Consensus       155 ~v~~~~~~l~~~~  167 (211)
                      |+++++++|++.+
T Consensus       157 gi~~L~~~i~~~l  169 (178)
T d1wf3a1         157 QVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.1e-25  Score=156.46  Aligned_cols=151  Identities=22%  Similarity=0.257  Sum_probs=109.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hhhHHhhc
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYR   77 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   77 (211)
                      +||+++|.+|||||||+|+|++..... ...+..........+...+  ..+.+||++|.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999876653 3333333333333444454  678899999954322        22445578


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      .+|++++++|..+..+.+....|...+... ..+.|+++|+||+|+.+....       +.+..+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            999999999999887766666655555443 347999999999998553221       112235689999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          158 EAFIKTAATI  167 (211)
Q Consensus       158 ~~~~~l~~~~  167 (211)
                      +++++|++.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998863

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.5e-23  Score=150.46  Aligned_cols=157  Identities=15%  Similarity=0.049  Sum_probs=106.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh-------hhhhHHhhcCCc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RSITRSYYRGAA   80 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d   80 (211)
                      .|+|+|.+|||||||+|+|++...........+.+...... .......+.+||+||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            69999999999999999999876654444443444433333 3333467899999994321       112334577889


Q ss_pred             EEEEEEECCCHh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237           81 GALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus        81 ~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      ++++++|.....  .......++...... ..++|+++|+||+|+.+.+  ..+...+.....+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999986532  233333333322111 1368999999999986532  23444555566788999999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          159 AFIKTAATIY  168 (211)
Q Consensus       159 ~~~~l~~~~~  168 (211)
                      +++.|.+.+.
T Consensus       159 L~~~i~~~l~  168 (180)
T d1udxa2         159 LKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999877764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=6.1e-23  Score=147.30  Aligned_cols=157  Identities=23%  Similarity=0.270  Sum_probs=113.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEE
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   83 (211)
                      ....||+|+|.+|||||||+++|.+..+.... ++.+.+.  ..+.+.+  ..+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            34689999999999999999999988775433 3323333  3344554  57889999999999999999999999999


Q ss_pred             EEEECCCHhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCcE
Q 028237           84 LVYDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIF  145 (211)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  145 (211)
                      +++|..+.........++..... ....+.|+++++||.|+..  .....++......                 .++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888777765554443 3336899999999999854  3445554444322                 13458


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 028237          146 MEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       146 ~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      +++||++|+|++|+|+||++++
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.3e-23  Score=149.56  Aligned_cols=157  Identities=18%  Similarity=0.148  Sum_probs=100.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhhhHHhhc
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSYYR   77 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~   77 (211)
                      .|+|+|++|||||||+|+|++..... ...+..+.......+...  ...+.+||++|..         .+......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccc--ccccccccccceeeeeccccccccccccccccc
Confidence            58999999999999999999865542 222222222222233333  4678999999932         22334455678


Q ss_pred             CCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237           78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      .+|+++++.+......... ..++..+...   ++|+++|+||+|+.+.  ...+....+.+....+++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            9999999999876554332 3344444443   7899999999998532  11222223333334568999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 028237          158 EAFIKTAATIYKKIQ  172 (211)
Q Consensus       158 ~~~~~l~~~~~~~~~  172 (211)
                      +++++|.+.+.++..
T Consensus       154 ~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         154 TMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999998876644

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.4e-23  Score=152.84  Aligned_cols=159  Identities=22%  Similarity=0.260  Sum_probs=110.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   85 (211)
                      .+||+++|.+|||||||+++|.   +...+.||.|...  ..+.+  +...+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   4456677777554  23333  458899999999999999999999999999999


Q ss_pred             EECCCHh----------hHHHHHHHHHHHH-HhcCCCCcEEEEEecCCCCCC----------------CCCCHHHHHHHH
Q 028237           86 YDITRRE----------TFNHLASWLEDAR-QHANANMTIMLIGNKCDLAHR----------------RAVSTEEGEQFA  138 (211)
Q Consensus        86 ~d~~~~~----------~~~~~~~~~~~l~-~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~  138 (211)
                      ++.++..          .++....++..+. .....+.|+++++||+|+.++                .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998743          2344444444443 333468999999999997321                112233444433


Q ss_pred             HHc-----------CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028237          139 KEH-----------GLIFMEASAKTAQNVEEAFIKTAATIYKKI  171 (211)
Q Consensus       139 ~~~-----------~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~  171 (211)
                      .+.           .+.++++||+++.||.++|+.+.+.+.++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            321           244678999999999999999998887764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=5.1e-23  Score=147.53  Aligned_cols=160  Identities=18%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc-----eeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----GVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   80 (211)
                      .++|+++|++++|||||+|+|++.........+.     +.+.......+......+.++|++|+..+.......+..+|
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d   84 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIID   84 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCC
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhcc
Confidence            3599999999999999999999643322211111     11111111111222367889999999999998999999999


Q ss_pred             EEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHc----CCcEEEEecCCCC
Q 028237           81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEH----GLIFMEASAKTAQ  154 (211)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~sa~~g~  154 (211)
                      ++++|+|..+....+. ...+..+..   .++|+++++||+|+.+.+...  .+..+.+.+..    +.+++++||++|.
T Consensus        85 ~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~  160 (179)
T d1wb1a4          85 LALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF  160 (179)
T ss_dssp             EEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCT
T ss_pred             ccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCc
Confidence            9999999987543222 222222222   378999999999986532111  11122222222    3579999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 028237          155 NVEEAFIKTAATIYK  169 (211)
Q Consensus       155 ~v~~~~~~l~~~~~~  169 (211)
                      |++++++.|.+.+-+
T Consensus       161 gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         161 GVDELKNLIITTLNN  175 (179)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCc
Confidence            999999999876654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=4.2e-23  Score=145.17  Aligned_cols=149  Identities=21%  Similarity=0.158  Sum_probs=102.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh---------hhhhHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------RSITRSYY   76 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   76 (211)
                      +||+|+|.+|+|||||+|+|++.... ....+..+.......+...+  ..+.+||+||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999986543 23333333333344455555  67889999994211         11223346


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v  156 (211)
                      ..+|++++|+|.+++.......-+. .+     ...++++++||+|+.+.  ...++.... ...+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~--~~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEK--INEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCC--CCHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccch--hhhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            7899999999999877644332221 11     36789999999999653  334333322 234578999999999999


Q ss_pred             HHHHHHHHHH
Q 028237          157 EEAFIKTAAT  166 (211)
Q Consensus       157 ~~~~~~l~~~  166 (211)
                      +++++.|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.3e-21  Score=140.74  Aligned_cols=160  Identities=19%  Similarity=0.081  Sum_probs=106.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh------------hhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF------------RSI   71 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------~~~   71 (211)
                      ..+||+|+|++|+|||||+|+|++..... ...+..+.......+.+++  ..+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            36999999999999999999999865432 2222323333334455555  56788899985432            224


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEE
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-----GLIFM  146 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  146 (211)
                      ...+++.+|++++|+|+..+...+ ...+...+..   .+.|+|+++||+|+........++......+.     .++++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            445567899999999998654322 2233333333   37899999999998654444455544443332     35799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 028237          147 EASAKTAQNVEEAFIKTAATIYKK  170 (211)
Q Consensus       147 ~~sa~~g~~v~~~~~~l~~~~~~~  170 (211)
                      ++||++|.|++++++.|.+.+.+.
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999997766543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=1.5e-21  Score=140.14  Aligned_cols=150  Identities=21%  Similarity=0.191  Sum_probs=98.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch---------------hhhhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES---------------FRSIT   72 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~~~   72 (211)
                      .|+|+|.+|||||||+|+|++........+.++..  ...+...+    +.+||+||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999887655444432322  33344333    46899999421               11123


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHH----------HHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLA----------SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG  142 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (211)
                      ...++.+|++++|+|...+.......          .++..+.   ..+.|+++|+||+|+.+..   ......+.+...
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNV---QEVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCH---HHHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhH---HHHHHHHHHHhc
Confidence            34467899999999997644322211          1222222   2489999999999975422   122222233322


Q ss_pred             -------CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 028237          143 -------LIFMEASAKTAQNVEEAFIKTAATIYK  169 (211)
Q Consensus       143 -------~~~~~~sa~~g~~v~~~~~~l~~~~~~  169 (211)
                             ..++++||++|.|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   238899999999999999999988765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=4.4e-22  Score=147.76  Aligned_cols=160  Identities=21%  Similarity=0.191  Sum_probs=104.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEE----------------ECCEEEEEEEEeCCCcchhhhhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT----------------IDNKPIKLQIWDTAGQESFRSIT   72 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~D~~G~~~~~~~~   72 (211)
                      |+|+|++++|||||+++|++...........+.........                ++....++.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987543222221111111111111                22234578999999999998888


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCH--------------------H
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST--------------------E  132 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--------------------~  132 (211)
                      ...+..+|++|+|+|+.+.-.... ...+..+..   .+.|+|+++||+|+.+......                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999987433222 233333333   3789999999999865332110                    0


Q ss_pred             HHH----HHHHH--------------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          133 EGE----QFAKE--------------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       133 ~~~----~~~~~--------------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                      ...    .+...              ..++++++||.+|.|++++++.|.....+.+.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            000    11110              01368999999999999999998887765544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=5.3e-22  Score=146.77  Aligned_cols=162  Identities=15%  Similarity=0.194  Sum_probs=115.9

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHhhcCCcEE
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   82 (211)
                      |+..+||+++|..|||||||+++|....+    .+|+|...  ..+.+++  +++.+||++|++.+...|..+++.++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccce
Confidence            56789999999999999999999976644    35556443  3455555  8899999999999999999999999999


Q ss_pred             EEEEECCCHh----------hHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCCC----CC------------------
Q 028237           83 LLVYDITRRE----------TFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRR----AV------------------  129 (211)
Q Consensus        83 i~v~d~~~~~----------~~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~----~~------------------  129 (211)
                      ++|+|+++.+          .+.+... |...+....-.+.|++|++||+|+.+..    ..                  
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            9999987532          2333333 3333333333689999999999983311    00                  


Q ss_pred             --------CHHHHHHHH-----HHc--------CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028237          130 --------STEEGEQFA-----KEH--------GLIFMEASAKTAQNVEEAFIKTAATIYKKIQ  172 (211)
Q Consensus       130 --------~~~~~~~~~-----~~~--------~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~  172 (211)
                              ...++..+.     +..        .+...++||.++.++..+|..+.+.|++...
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l  218 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  218 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHh
Confidence                    122232222     111        1235689999999999999999888887643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=4.5e-22  Score=143.20  Aligned_cols=157  Identities=16%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh----hhhhH---HhhcCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----RSITR---SYYRGA   79 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~   79 (211)
                      -+|+|+|++|||||||+|+|++........+..+.+.......+.+ ...+.+|||||....    ..+..   ..+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            3699999999999999999998776544444434444444444433 346889999996321    12222   224567


Q ss_pred             cEEEEEEECCCHhhHHHH--HHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEecCC
Q 028237           80 AGALLVYDITRRETFNHL--ASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH--GLIFMEASAKT  152 (211)
Q Consensus        80 d~~i~v~d~~~~~~~~~~--~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~  152 (211)
                      +.++++++..........  ..+........   ..++|+++++||+|+.+.    .+..+.+.+..  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCC
Confidence            888888876543322111  11111111211   247899999999998642    23334444444  57899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 028237          153 AQNVEEAFIKTAATIY  168 (211)
Q Consensus       153 g~~v~~~~~~l~~~~~  168 (211)
                      |.|++++++.|.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999888663

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.3e-20  Score=135.59  Aligned_cols=117  Identities=18%  Similarity=0.282  Sum_probs=86.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-hhhHHhhcCCcEEEEEE
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-SITRSYYRGAAGALLVY   86 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   86 (211)
                      +|+|+|++|||||||+++|+++.+.... ++.+.+.....+ ..+..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876543 444554433322 24456789999999998885 57788899999999999


Q ss_pred             ECCCHhh-HHHHHHHHH-HHHHhc--CCCCcEEEEEecCCCCCC
Q 028237           87 DITRRET-FNHLASWLE-DARQHA--NANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        87 d~~~~~~-~~~~~~~~~-~l~~~~--~~~~p~ivv~nK~D~~~~  126 (211)
                      |+++..+ ......++. .+....  ..+.|++|++||+|+.+.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998665 344444443 332222  246899999999999753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=8.3e-21  Score=137.66  Aligned_cols=163  Identities=16%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             CcceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCC---C--CceeEEEEEEEE-------------------ECCEEEEE
Q 028237            2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---L--TIGVEFGARMIT-------------------IDNKPIKL   57 (211)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~---~--~~~~~~~~~~~~-------------------~~~~~~~~   57 (211)
                      +++..++|+++|+.++|||||+++|++........   .  +....+......                   .......+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            45678899999999999999999998743322111   1  111111111111                   01124678


Q ss_pred             EEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC--CHHHHH
Q 028237           58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGE  135 (211)
Q Consensus        58 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~  135 (211)
                      .++|+||+..|.......+..+|++++|+|+.+........+.+..+....  ..++++++||+|+.+....  ....+.
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHH
Confidence            999999999999988888999999999999987533233333333333331  3457888999998653211  122233


Q ss_pred             HHHHHc---CCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          136 QFAKEH---GLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       136 ~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      .+....   +++++++||++|.|+++|++.|.+.
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            333333   3679999999999999998887664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2.6e-20  Score=134.96  Aligned_cols=154  Identities=14%  Similarity=0.162  Sum_probs=92.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcc----------hhh---hhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFR---SIT   72 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~---~~~   72 (211)
                      ..+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|+++..          .+.   ...
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            45899999999999999999998654323333323333333333332   23355666521          111   122


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCcEEEE
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE----HGLIFMEA  148 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~  148 (211)
                      ...+..+|++++|+|+.++.... ...+++.+...   ++|+++|+||+|+.+.... .+....+.+.    .+.+++.+
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSND-DVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhcccccccc-ccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEE
Confidence            23456778999999998654322 23344444433   7899999999998543322 1222222232    34569999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~  167 (211)
                      ||++|.|+++++++|.+.+
T Consensus       175 SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998875

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=2e-19  Score=131.21  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=101.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----CceeEEEEEEEEE------------------------CCEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----TIGVEFGARMITI------------------------DNKPI   55 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~------------------------~~~~~   55 (211)
                      ..++|+++|+.++|||||+++|++.........     +.........+..                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            347999999999999999999986322111110     0000111111111                        11235


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--HHH
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEE  133 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~  133 (211)
                      .+.+.|+||+..|.......+..+|++|+|+|+.+.-........+..+....  -.|+||++||+|+.+.....  ...
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHH
Confidence            78999999999999888888999999999999987431122222233333321  34889999999996532211  112


Q ss_pred             HHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHH
Q 028237          134 GEQFAKEH---GLIFMEASAKTAQNVEEAFIKTAAT  166 (211)
Q Consensus       134 ~~~~~~~~---~~~~~~~sa~~g~~v~~~~~~l~~~  166 (211)
                      ...+....   +++++++||++|.|++++++.|.+.
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            22233222   3679999999999999999887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.81  E-value=2.4e-20  Score=134.82  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC-----CC---------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK-----RF---------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI   71 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   71 (211)
                      .++|+++|+.++|||||+++|++.     ..         ........|++.....+.+......+.++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            589999999999999999999742     00         0111122245555555556556688999999999999988


Q ss_pred             hHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCC---CHHHHHHHHHHcC-----C
Q 028237           72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV---STEEGEQFAKEHG-----L  143 (211)
Q Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~  143 (211)
                      ....+..+|++|+|+|+.+....+. ...+..+....  ..|+||++||+|+.+..+.   -..++..+....+     +
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~  159 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET  159 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            8889999999999999987443222 22233333321  4678999999998643211   1123444444443     5


Q ss_pred             cEEEEecCCC----------CCHHHHHHHHH
Q 028237          144 IFMEASAKTA----------QNVEEAFIKTA  164 (211)
Q Consensus       144 ~~~~~sa~~g----------~~v~~~~~~l~  164 (211)
                      +++++||++|          .++.++++.|.
T Consensus       160 pii~iSa~~g~~~~~~~~~~~~~~~Lldai~  190 (196)
T d1d2ea3         160 PIIVGSALCALEQRDPELGLKSVQKLLDAVD  190 (196)
T ss_dssp             CEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred             EEEEEEccccccccCcccccCCHHHHHHHHH
Confidence            6999999988          36666665543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1e-18  Score=124.58  Aligned_cols=158  Identities=20%  Similarity=0.139  Sum_probs=98.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhh---------hhHH
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS---------ITRS   74 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   74 (211)
                      .+.-.|+|+|.+|+|||||+|+|++...........+.+.........+ ...+..||++|......         ....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC-CceeEeecCCCceecchhhhhhhhhhcccc
Confidence            3445699999999999999999998765533333323333333332322 24566788887543221         1112


Q ss_pred             hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEecCCC
Q 028237           75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTA  153 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~g  153 (211)
                      ....+++++++.|..+....  ...+...+.   ....|.++++||.|............+.+....+ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            23456788888887753321  112222222   2367899999999986543222334445555555 57999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028237          154 QNVEEAFIKTAATI  167 (211)
Q Consensus       154 ~~v~~~~~~l~~~~  167 (211)
                      .|++++++.|.+.+
T Consensus       157 ~gi~~L~~~i~~~l  170 (179)
T d1egaa1         157 LNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999987643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.77  E-value=5.2e-18  Score=124.68  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=99.0

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCC-------------------------------CCCCceeEEEEEEEEEC
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------------------------HDLTIGVEFGARMITID   51 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   51 (211)
                      .+..+||+++|+.++|||||+.+|+...-...                               .....+.+.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            45689999999999999999999964211000                               00011222222223333


Q ss_pred             CEEEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCCCC
Q 028237           52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM-TIMLIGNKCDLAHRRAVS  130 (211)
Q Consensus        52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~~~~~  130 (211)
                      ....++.++|+||+..|-......+..+|++|+|+|+.+...-+.. ..+..+...   ++ .+|++.||+|+.+..+..
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~~---gv~~iiv~vNK~D~~~~~~~~  161 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL---GIKHIVVAINKMDLNGFDERV  161 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHHc---CCCEEEEEEEcccccccccee
Confidence            3457899999999999999899999999999999999874332222 222222222   54 478899999997643221


Q ss_pred             ----HHHHHHHHHHcCC-----cEEEEecCCCCCHHH
Q 028237          131 ----TEEGEQFAKEHGL-----IFMEASAKTAQNVEE  158 (211)
Q Consensus       131 ----~~~~~~~~~~~~~-----~~~~~sa~~g~~v~~  158 (211)
                          ..++..+.+..++     +++++||++|.|+.+
T Consensus       162 ~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         162 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence                2234455555543     589999999998843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=8.7e-19  Score=127.51  Aligned_cols=144  Identities=17%  Similarity=0.121  Sum_probs=93.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC-----C-CCCCCC---------CceeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR-----F-QPVHDL---------TIGVEFGARMITIDNKPIKLQIWDTAGQESFRS   70 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~-----~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   70 (211)
                      .++|+++|+.++|||||+++|+...     . ......         .-+++.....+.+...+.++.|+||||+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            5899999999999999999996320     0 000000         003333333344444557889999999999999


Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC----
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG----  142 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~----  142 (211)
                      .....+..+|++|+|+|+.+.-..+.. ..+..+...   +.| ++|++||+|+.+..+.   ..++++.+....+    
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~  158 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGD  158 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence            899999999999999999875444332 223333333   665 6778999998652211   1233444444443    


Q ss_pred             -CcEEEEecCCC
Q 028237          143 -LIFMEASAKTA  153 (211)
Q Consensus       143 -~~~~~~sa~~g  153 (211)
                       ++++..|+..+
T Consensus       159 ~i~~i~~sa~~~  170 (204)
T d2c78a3         159 EVPVIRGSALLA  170 (204)
T ss_dssp             TSCEEECCHHHH
T ss_pred             cceeeeeechhh
Confidence             45888887643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.1e-17  Score=122.05  Aligned_cols=116  Identities=21%  Similarity=0.276  Sum_probs=80.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhhhhhHHh----hcCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY----YRGAA   80 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d   80 (211)
                      |..+|+|+|++|||||||+|+|++..+...    ++.....  ..+......+.+||+||++.+...+..+    ....+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPL--SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCE--EETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceE--EEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            346899999999999999999998876432    2222222  2334445678899999998776655544    44567


Q ss_pred             EEEEEEECCC-HhhHHHHHHHH----HHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           81 GALLVYDITR-RETFNHLASWL----EDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        81 ~~i~v~d~~~-~~~~~~~~~~~----~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .+++++|..+ ...++.+..|+    ..+......+.|+++++||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888888764 44445544443    3334445578999999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3e-17  Score=117.37  Aligned_cols=161  Identities=14%  Similarity=0.064  Sum_probs=84.4

Q ss_pred             cceeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch-------hhhh---h
Q 028237            3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSI---T   72 (211)
Q Consensus         3 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~---~   72 (211)
                      .+..++|+|+|.+|||||||+|+|++...........+................+..++.++...       ....   .
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            46689999999999999999999998766544443333333333333322222222222222111       1111   1


Q ss_pred             HHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHc--CCcEEEE
Q 028237           73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAKEH--GLIFMEA  148 (211)
Q Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~~~~  148 (211)
                      .......+.++.+.+......... ..++..+..   ...++++++||+|+.+.....  .+..++.....  ..+++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v  168 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF  168 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence            122334446666666665433222 223333333   377899999999985532111  11122222222  3468999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 028237          149 SAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       149 sa~~g~~v~~~~~~l~~~~  167 (211)
                      ||++|.|++++++.|.+.+
T Consensus       169 SA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         169 SSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999887643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=3.3e-16  Score=117.91  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=81.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC------------------CCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF------------------QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES   67 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   67 (211)
                      .-+|+|+|+.++|||||+.+|+...-                  +.+..+.+++......+.++  +.+++|+||||+..
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCchhh
Confidence            44799999999999999999864211                  11111222333333334444  48899999999999


Q ss_pred             hhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      |.......++.+|++|+|+|..+.-....... ++....   .+.|.++++||+|...
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHHHT---TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHH-HHHHHH---cCCCEEEEEecccccc
Confidence            99999999999999999999988554443333 344443   3899999999999854

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=4.1e-16  Score=117.07  Aligned_cols=111  Identities=18%  Similarity=0.209  Sum_probs=80.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCC------------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV------------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      +|+|+|+.++|||||+.+|+...-...                  .....+.......+.+++  ++++++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            699999999999999999864221110                  011123333334444554  789999999999999


Q ss_pred             hhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      ......++.+|++|+|+|+.+.-.......| ..+...   +.|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            9999999999999999999875544433333 333333   89999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.5e-17  Score=120.91  Aligned_cols=148  Identities=18%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCC--CC-----------------------------CCCCCCceeEEEEEEEEECCEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKR--FQ-----------------------------PVHDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (211)
                      .++|+++|+.++|||||+.+|+...  ..                             .+..+.++++.....+.+  ..
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--PK   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--SS
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc--CC
Confidence            5899999999999999999986311  00                             011112233333333333  45


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhH------HHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLASWLEDARQHANANMT-IMLIGNKCDLAHRR  127 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~  127 (211)
                      +++.|.|+||+..|.......+..+|++|+|+|+....-.      ......+......   ++| +||++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCC
Confidence            8999999999999999999999999999999999864210      0112222222222   555 78899999986643


Q ss_pred             CCC----HHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237          128 AVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE  158 (211)
Q Consensus       128 ~~~----~~~~~~~~~~~~-----~~~~~~sa~~g~~v~~  158 (211)
                      ...    ..++..+....+     ++++++|+..|.|+.+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            221    233445555554     4589999999988754

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=9.2e-18  Score=125.24  Aligned_cols=153  Identities=18%  Similarity=0.145  Sum_probs=83.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCC-----------------------------CCCCCceeEEEEEEEEECCEEE
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDNKPI   55 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (211)
                      ..++|+++|+.++|||||+.+|+...-..                             ......+.+.......+.....
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            46799999999999999999995311100                             0001112222222222333447


Q ss_pred             EEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhH---H---HHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCC
Q 028237           56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---N---HLASWLEDARQHANANM-TIMLIGNKCDLAHRRA  128 (211)
Q Consensus        56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~---~---~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~~~  128 (211)
                      ++.+.|+||+..|..........+|++++|+|+.+..-.   .   .....+..+...   ++ ++++++||+|+.....
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTCSS
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCccch
Confidence            899999999999999999999999999999999863211   0   112222222222   44 4789999999864321


Q ss_pred             C--CH----HHHHHHHHHc-------CCcEEEEecCCCCCHHHHH
Q 028237          129 V--ST----EEGEQFAKEH-------GLIFMEASAKTAQNVEEAF  160 (211)
Q Consensus       129 ~--~~----~~~~~~~~~~-------~~~~~~~sa~~g~~v~~~~  160 (211)
                      .  ..    +++..+....       .++++++||++|.|+.+++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            1  11    2223232322       2469999999999997654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=1.4e-16  Score=117.36  Aligned_cols=149  Identities=20%  Similarity=0.245  Sum_probs=93.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC-------------------------------CCCCCCCceeEEEEEEEEECCEE
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMITIDNKP   54 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   54 (211)
                      .++|+|+|+.++|||||+.+|+...-                               ..+...  +.+.......++...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER--GVTINLTFMRFETKK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcC--CccccceEEEEecCC
Confidence            57999999999999999998853110                               111111  333333334444456


Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHH------HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN------HLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  128 (211)
                      +.+.+.|+||+..|.......++.+|++|+|+|+.+.....      ...+.+......  .-.++|+++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccc
Confidence            88999999999999999999999999999999998742111      111112222211  1346888999999864321


Q ss_pred             C--CH----HHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 028237          129 V--ST----EEGEQFAKEHG-----LIFMEASAKTAQNVEE  158 (211)
Q Consensus       129 ~--~~----~~~~~~~~~~~-----~~~~~~sa~~g~~v~~  158 (211)
                      .  ..    .++..+....+     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1  11    22334444443     4589999999998854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.1e-14  Score=115.75  Aligned_cols=156  Identities=13%  Similarity=0.130  Sum_probs=90.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCc---eeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----hhHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMITIDNKPIKLQIWDTAGQESFRS-----ITRSYY   76 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~   76 (211)
                      ..++|+|+|.+|+|||||+|.|++...........   +++.....+...+ ...+.+|||||......     +....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            36899999999999999999999865433222111   1222222333332 23578999999654332     222235


Q ss_pred             cCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-------CCCCCHHH----HH----HHHHHc
Q 028237           77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-------RRAVSTEE----GE----QFAKEH  141 (211)
Q Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~----~~----~~~~~~  141 (211)
                      ...|.+|++.|..-....   ..++..+...   ++|+++|.||+|...       ......+.    ++    ...+..
T Consensus       134 ~~~d~~l~~~~~~~~~~d---~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKND---IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHHH---HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHHH---HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            667888888765432221   2233344333   799999999999521       11122222    22    122233


Q ss_pred             CC---cEEEEecCCC--CCHHHHHHHHHHHH
Q 028237          142 GL---IFMEASAKTA--QNVEEAFIKTAATI  167 (211)
Q Consensus       142 ~~---~~~~~sa~~g--~~v~~~~~~l~~~~  167 (211)
                      ++   +++.+|..+.  .++.++.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            33   4888887654  47888887776654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=9.1e-15  Score=113.20  Aligned_cols=116  Identities=20%  Similarity=0.198  Sum_probs=79.7

Q ss_pred             eee-eEEEEcCCCCCHHHHHHHHhhCC----------------CCCCCCCCceeEEEEEEEEE--------------CCE
Q 028237            5 YLF-KYIIIGDTGVGKSCLLLQFTDKR----------------FQPVHDLTIGVEFGARMITI--------------DNK   53 (211)
Q Consensus         5 ~~~-~i~v~G~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------~~~   53 (211)
                      ..+ +|+|+|+.++|||||+.+|+...                ...+..+..++........+              +++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            345 69999999999999999996311                11111122222222222322              345


Q ss_pred             EEEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 028237           54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA  124 (211)
Q Consensus        54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  124 (211)
                      .+.++++||||+..|.......++.+|++|+|+|+.+.-..+....|. ....   .+.|.++++||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~-~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHH-HHHH---cCCCeEEEEECcccc
Confidence            688999999999999999999999999999999999855444333332 2222   389999999999973

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.55  E-value=2.3e-14  Score=107.52  Aligned_cols=125  Identities=14%  Similarity=0.082  Sum_probs=77.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hhhHHh-
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSY-   75 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~-   75 (211)
                      ..++|+|+|.+|+|||||+|.+++....... .+..+...........+  ..+.++||||.....       .....+ 
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            4689999999999999999999987655433 33334444445555665  678999999954221       112222 


Q ss_pred             -hcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCCCH
Q 028237           76 -YRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVST  131 (211)
Q Consensus        76 -~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~  131 (211)
                       ....|+++||++++...-.......+..+.....  ...+++||+||.|....+....
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence             2346789999888753211111222333332221  2468999999999865444443

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.42  E-value=1.8e-13  Score=101.33  Aligned_cols=111  Identities=14%  Similarity=-0.014  Sum_probs=67.1

Q ss_pred             EEEEEEeCCCcchhhhhhHHh-----hcCCcEEEEEEECCC---HhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           55 IKLQIWDTAGQESFRSITRSY-----YRGAAGALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      ..+.+.|+||+..+.......     ....+.+++++|+..   +................  ...|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            457889999988764432222     224568899999753   44333222222222212  27899999999998653


Q ss_pred             CCCCH--------------------------HHHHHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 028237          127 RAVST--------------------------EEGEQFAKE--HGLIFMEASAKTAQNVEEAFIKTAATI  167 (211)
Q Consensus       127 ~~~~~--------------------------~~~~~~~~~--~~~~~~~~sa~~g~~v~~~~~~l~~~~  167 (211)
                      .....                          .......++  ..++++++||++|+|+++++..|.+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            21000                          000011111  246899999999999999999987754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.31  E-value=6.2e-12  Score=95.10  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=56.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcchh---
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESF---   68 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~---   68 (211)
                      ++|+|+|.|+||||||+++++.........|+++.....-.+.+.+.               ...+.++|.||.-.-   
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            69999999999999999999998776666565555555445555432               135889999995322   


Q ss_pred             -hhhhH---HhhcCCcEEEEEEECC
Q 028237           69 -RSITR---SYYRGAAGALLVYDIT   89 (211)
Q Consensus        69 -~~~~~---~~~~~~d~~i~v~d~~   89 (211)
                       ..+..   ..++.+|++|+|+|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence             22333   3477899999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=7.4e-11  Score=89.85  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCcch--
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQES--   67 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--   67 (211)
                      .++|+|+|.|+||||||+|.+++... .....|.++.+...-.+.+.+.               ...+.+.|.||...  
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            48999999999999999999998754 3444555465555555655442               25788999998432  


Q ss_pred             --hhhh---hHHhhcCCcEEEEEEECCC
Q 028237           68 --FRSI---TRSYYRGAAGALLVYDITR   90 (211)
Q Consensus        68 --~~~~---~~~~~~~~d~~i~v~d~~~   90 (211)
                        -..+   ....++.+|++|+|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence              1222   3334789999999998754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=8.3e-12  Score=95.98  Aligned_cols=111  Identities=9%  Similarity=0.032  Sum_probs=66.5

Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHH
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEG  134 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  134 (211)
                      +.+.|.+|.|.-...   ......+|.+++|..+...+..+.   ...-+.+.     +-++|+||.|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~---~k~gilE~-----aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQG---IKKGIFEL-----ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---------CCTTHHHH-----CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhh---hhhhHhhh-----hheeeEeccccccchHHHHHHH
Confidence            456677777643222   224456899999999987654332   22222333     3499999999865322211111


Q ss_pred             HHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 028237          135 EQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVF  176 (211)
Q Consensus       135 ~~~~~~----------~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~~  176 (211)
                      ..+...          +..+++.+||++|.|++++++.|.+........+..
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~l  264 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEI  264 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCChH
Confidence            112211          345799999999999999999998877666555443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=8.9e-12  Score=95.93  Aligned_cols=93  Identities=13%  Similarity=0.009  Sum_probs=55.2

Q ss_pred             hhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHH-------HcCCcE
Q 028237           75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAK-------EHGLIF  145 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~-------~~~~~~  145 (211)
                      +...+|.+++|..+...+..+   .....+....     -++|+||.|........  ..+......       .+..++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq---~~k~gi~e~a-----Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQ---GIKKGLMEVA-----DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC------C---CCCHHHHHHC-----SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCchhhh---hhchhhhccc-----cEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            566789999998876544332   2223333333     38889999985422111  111222221       233569


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHhcCc
Q 028237          146 MEASAKTAQNVEEAFIKTAATIYKKIQDGV  175 (211)
Q Consensus       146 ~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~  175 (211)
                      +.+||.+|.|++++++.|.+........+.
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG~  265 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKTALTASGR  265 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHHhCCH
Confidence            999999999999999998876665554443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=7.1e-10  Score=84.33  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCCceeEEEEEEEEE----------CC----------------------
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITI----------DN----------------------   52 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~----------------------   52 (211)
                      ..+|+|+|..++|||||||.|++..+ +....+++..........-          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45899999999999999999999885 4444443222221111110          00                      


Q ss_pred             -----------------EEEEEEEEeCCCcch-------------hhhhhHHhhcCCc-EEEEEEECCCHhhHHHHHHHH
Q 028237           53 -----------------KPIKLQIWDTAGQES-------------FRSITRSYYRGAA-GALLVYDITRRETFNHLASWL  101 (211)
Q Consensus        53 -----------------~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~  101 (211)
                                       ....+.++|+||...             ...+...|..+.+ ++++|.+.....+...+..+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             012378999999421             2345667777777 455666666555444444443


Q ss_pred             HHHHHhcCCCCcEEEEEecCCCCCC
Q 028237          102 EDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus       102 ~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      ..+   .....++++|+||+|..+.
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCT
T ss_pred             HHh---CcCCCceeeEEeccccccc
Confidence            333   3346789999999998654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=9.3e-11  Score=90.21  Aligned_cols=83  Identities=20%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEE--E--------------------CCEEEEEEEEeCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT--I--------------------DNKPIKLQIWDTAG   64 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~i~D~~G   64 (211)
                      ++|+++|.|+||||||+|.|++........|+++.+...-.+.  .                    ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999999877766666544433222111  0                    11346799999999


Q ss_pred             cchh----hhhhHHh---hcCCcEEEEEEECC
Q 028237           65 QESF----RSITRSY---YRGAAGALLVYDIT   89 (211)
Q Consensus        65 ~~~~----~~~~~~~---~~~~d~~i~v~d~~   89 (211)
                      .-..    ..+...+   ++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            5321    2233333   56889999999975

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.99  E-value=1.4e-09  Score=82.95  Aligned_cols=117  Identities=14%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCCceeEEEEEE-------------------------------------
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARM-------------------------------------   47 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~-------------------------------------   47 (211)
                      ..+|+|+|..++|||||||.|++..+- ....+++........                                     
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            358999999999999999999998763 333222111111100                                     


Q ss_pred             ---------------------EEECCEEEEEEEEeCCCcch-------------hhhhhHHhhcCCcEEEEEE-ECCCHh
Q 028237           48 ---------------------ITIDNKPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVY-DITRRE   92 (211)
Q Consensus        48 ---------------------~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~   92 (211)
                                           +.... ...+.++|+||...             ...+...|+.+++.+|+++ +.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                 00000 12477999999532             2357778889999766665 443322


Q ss_pred             hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 028237           93 TFNHLASWLEDARQHANANMTIMLIGNKCDLAHR  126 (211)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  126 (211)
                      .......+.   ........++++|+||+|..+.
T Consensus       183 ~~~~~~~~~---~~~~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQLA---KEVDPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHHH---HHHCSSCSSEEEEEECTTSSCS
T ss_pred             cccHHHHHH---HHhCcCCCeEEEEEeccccccc
Confidence            222222232   3333346789999999998543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=1.1e-08  Score=76.77  Aligned_cols=57  Identities=26%  Similarity=0.449  Sum_probs=37.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCc
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ   65 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   65 (211)
                      ..++|+|+|.||+|||||+|+|.+........ ..|.|.....+..+.   .+.++||||.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEEECCC---CeEEecCCCc
Confidence            46899999999999999999999876543333 336666555565543   4789999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=6.7e-08  Score=69.67  Aligned_cols=84  Identities=19%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             hhcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCcEEEEecC
Q 028237           75 YYRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE--HGLIFMEASAK  151 (211)
Q Consensus        75 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~  151 (211)
                      ...+.|.+++|+++.+|+. ...+..++-....   .++|.+||+||+|+.+..  ..+....+...  .+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEeccc
Confidence            3568899999999988653 4445555444333   389999999999996422  12233333433  34679999999


Q ss_pred             CCCCHHHHHHHH
Q 028237          152 TAQNVEEAFIKT  163 (211)
Q Consensus       152 ~g~~v~~~~~~l  163 (211)
                      ++.|++++..++
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999987776

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=2.7e-07  Score=68.88  Aligned_cols=118  Identities=12%  Similarity=0.071  Sum_probs=77.3

Q ss_pred             hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      .....++.+|++|+|+|+.+|.+..+  ..   +.... .++|.|+|+||+|+.+..  ..+...++....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~---l~~~~-~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PM---IEDIL-KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HH---HHHHC-SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HH---HHHHH-cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            34567899999999999988776433  11   11222 278999999999996421  122223333445678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcccCCCCCcceeeccCCCCCCCC
Q 028237          151 KTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSG  197 (211)
Q Consensus       151 ~~g~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (211)
                      .++.+..++...+.+.+.+...... ........++++-.|.|+..+
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~vvG~PNvGK  125 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDRMR-AKGVKPRAIRALIIGIPNVGK  125 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHHHH-HTTCCCCCEEEEEEESTTSSH
T ss_pred             ccCCCccccchhhhhhhhhhhhhhh-hccCCCCceEEEEEecCccch
Confidence            9999999888887776665544322 222334556677677775443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.4e-07  Score=67.94  Aligned_cols=59  Identities=24%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCCCCC------CceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ..+++|++|+|||||+|+|.+.........      .--++.....+.+.+..   .++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            468999999999999999987533222111      11122223345554333   389999976553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.33  E-value=1.6e-06  Score=59.94  Aligned_cols=23  Identities=39%  Similarity=0.772  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.1e-05  Score=57.94  Aligned_cols=72  Identities=11%  Similarity=0.017  Sum_probs=41.6

Q ss_pred             CCcEEEEEEECCCHhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEecCCCC
Q 028237           78 GAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEASAKTAQ  154 (211)
Q Consensus        78 ~~d~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~g~  154 (211)
                      ..+.+|.|+|+......... ..+..++ ..+     -++++||+|+.+.    .+.+++..+..+  +++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi-~~A-----D~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQV-GYA-----DRILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHH-HTC-----SEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHH-HhC-----CcccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            35788999999875432221 2222333 222     3788999998642    245556665554  5677554 3345


Q ss_pred             CHHHHH
Q 028237          155 NVEEAF  160 (211)
Q Consensus       155 ~v~~~~  160 (211)
                      ++..+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            665554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=3.3e-07  Score=66.20  Aligned_cols=57  Identities=23%  Similarity=0.259  Sum_probs=32.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCCCCC------CCC-CceeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRFQPV------HDL-TIGVEFGARMITIDNKPIKLQIWDTAGQESFR   69 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   69 (211)
                      ..+++|++|+|||||+|+|.+......      ... .++++. ...+..++.    .++||||..++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~-~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH-VELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCC-CCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeee-EEEEecCCC----EEEECCcccccc
Confidence            457999999999999999987532211      111 112222 222445552    278999977654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=7.3e-07  Score=64.32  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             hcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCcEEEEecC
Q 028237           76 YRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE---GEQFAKEHGLIFMEASAK  151 (211)
Q Consensus        76 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~sa~  151 (211)
                      ..+.|.+++|+++.+|+ ....+..++-....   .+++.+||+||+|+.+..+ ..+.   ........+++++.+|+.
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeecC
Confidence            46889999999998765 34555554443332   3889999999999965321 1222   233445568999999999


Q ss_pred             CCCCHHHHHHHH
Q 028237          152 TAQNVEEAFIKT  163 (211)
Q Consensus       152 ~g~~v~~~~~~l  163 (211)
                      ++.|++++..+|
T Consensus        84 ~~~gl~~L~~~l   95 (231)
T d1t9ha2          84 DQDSLADIIPHF   95 (231)
T ss_dssp             HHTTCTTTGGGG
T ss_pred             ChhHHHHHHHhh
Confidence            999998887665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=9.2e-06  Score=57.65  Aligned_cols=90  Identities=13%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCcchhhh----hhHHhh--------cCCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237           55 IKLQIWDTAGQESFRS----ITRSYY--------RGAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKC  121 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~----~~~~~~--------~~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~  121 (211)
                      ..+.++||+|...+..    ....+.        ...+-.++|+|.+. .+....+...+..+      + +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            5688999999543322    111111        24567899999875 44444444444443      2 225679999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 028237          122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE  157 (211)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~  157 (211)
                      |-..    ..-.+..+....+.|+..++  +|++.+
T Consensus       162 Det~----~~G~~l~~~~~~~~Pi~~i~--~Gq~p~  191 (207)
T d1okkd2         162 DGTA----KGGVLIPIVRTLKVPIKFVG--VGEGPD  191 (207)
T ss_dssp             TSSC----CCTTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCChH
Confidence            9633    23345666778888866655  344443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.93  E-value=6.2e-05  Score=53.40  Aligned_cols=91  Identities=15%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCcchhhh------hhHHh--hcCCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 028237           55 IKLQIWDTAGQESFRS------ITRSY--YRGAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  125 (211)
                      ..+.++||+|...+..      ....+  ....+-.++|++++... ..+.+...+..+      + +--+++||.|.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------K-IGTIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------T-TEEEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------C-cceEEEecccCC-
Confidence            4688999999543321      11112  22456788899887543 233322222221      2 234679999953 


Q ss_pred             CCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237          126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                         ...-.+..+....++|+..++  +|.++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               346667788888999977666  4666644

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=2.9e-05  Score=55.26  Aligned_cols=91  Identities=22%  Similarity=0.171  Sum_probs=53.1

Q ss_pred             EEEEEEeCCCcchhhhh----hHHhhc--------CCcEEEEEEECCCHh-hHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237           55 IKLQIWDTAGQESFRSI----TRSYYR--------GAAGALLVYDITRRE-TFNHLASWLEDARQHANANMTIMLIGNKC  121 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~----~~~~~~--------~~d~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~p~ivv~nK~  121 (211)
                      +.+.|+||+|...++..    ...+.+        ..+-.++|+|.+... .+..+...+..+       -+--+++||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            46889999995433221    111111        146789999986532 333333332222       2346779999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237          122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      |-..    ..-.+..+....+.|+..++  +|.++++
T Consensus       167 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9532    23456677788889977666  4666644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=8.6e-05  Score=52.59  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             EEEEEEeCCCcchhhh----hhH---Hhhc-----CCcEEEEEEECCC-HhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 028237           55 IKLQIWDTAGQESFRS----ITR---SYYR-----GAAGALLVYDITR-RETFNHLASWLEDARQHANANMTIMLIGNKC  121 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~----~~~---~~~~-----~~d~~i~v~d~~~-~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~  121 (211)
                      +.+.|+||+|....+.    ...   ...+     ..+-.++|+|... .+....+...+..+       -+--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            4678999999543321    111   1122     2468889999865 33343333333322       2346779999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 028237          122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE  158 (211)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~g~~v~~  158 (211)
                      |-..    ..-.+..+....++|+..++  .|+++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9632    24456677788889977666  6666643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.71  E-value=0.0002  Score=50.59  Aligned_cols=84  Identities=19%  Similarity=0.111  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCcchhhh----hhHHh--hcCCcEEEEEEECCCHhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 028237           55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRET-FNHLASWLEDARQHANANMTIMLIGNKCDLAHRR  127 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  127 (211)
                      ..+.++||+|....+.    .+..+  ....+-+++|.+...... .+.+..+...+      + .-=+++||.|-.   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~-~~~~I~TKlDe~---  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------G-VTGLVLTKLDGD---  162 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------C-CCEEEEECGGGC---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------C-CCeeEEeecCcc---
Confidence            4688999999543322    12222  345678899999876542 22222222222      1 234779999953   


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 028237          128 AVSTEEGEQFAKEHGLIFMEAS  149 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~s  149 (211)
                       ...-.+..++...+.|+..++
T Consensus       163 -~~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         163 -ARGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             -SSCHHHHHHHHHHCCCEEEEC
T ss_pred             -ccchHHHHHHHHHCCCEEEEe
Confidence             234556777888889876554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.62  E-value=1.8e-05  Score=55.35  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=25.0

Q ss_pred             CCcceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            1 MSYAYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         1 ~~~~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      |+...+..|+|+|++||||||+.++|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            7777788899999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.59  E-value=1.4e-05  Score=54.48  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=1.5e-05  Score=54.88  Aligned_cols=40  Identities=10%  Similarity=0.140  Sum_probs=28.5

Q ss_pred             HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcCc
Q 028237          133 EGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGV  175 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~sa~~g~~v~~~~~~l~~~~~~~~~~~~  175 (211)
                      ....+.+.++.+++.+..   .++++.+..+.+.+.+.+.++.
T Consensus       147 ~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~  186 (192)
T d1lw7a2         147 LLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEE  186 (192)
T ss_dssp             HHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCc
Confidence            345566677788777653   4789999998888877766554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=1.9e-05  Score=53.67  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=2.9e-05  Score=53.60  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.44  E-value=3.7e-05  Score=52.46  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..++|+|.|++||||||+.+.|...
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.40  E-value=3.3e-05  Score=53.82  Aligned_cols=25  Identities=24%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+++|+|+|++||||||+.+.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999988643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.39  E-value=4.4e-05  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=4.6e-05  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.624  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ++|+|+|++||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998644

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.36  E-value=5.1e-05  Score=50.61  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|++|||||||++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=5.4e-05  Score=51.48  Aligned_cols=20  Identities=20%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      |+|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.1e-05  Score=52.28  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +||+|+|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988853

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=5.6e-05  Score=52.19  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++|+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.32  E-value=6.1e-05  Score=52.56  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..++|+|+|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.32  E-value=5.8e-05  Score=52.51  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+||+|+|+|||||||+.+.|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999998874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00017  Score=53.32  Aligned_cols=61  Identities=23%  Similarity=0.163  Sum_probs=38.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhCCCCCCCCCC-ceeEEEEEEE--EE-CCEEEEEEEEeCCCcc
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMI--TI-DNKPIKLQIWDTAGQE   66 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~   66 (211)
                      ..=|.|+|+.++|||+|+|.|.+.........+ ...+.....+  .+ .+....+.++||.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            446889999999999999999987643221111 1112222222  11 3445678999999954

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.23  E-value=0.00011  Score=51.74  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.22  E-value=8.1e-05  Score=50.46  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -|+|.|++||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0001  Score=53.36  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|+|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00014  Score=52.31  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999998765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=4.9e-05  Score=52.56  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|+|++|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00014  Score=50.61  Aligned_cols=23  Identities=17%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++.|+|+|++||||||..+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00015  Score=49.67  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+.-|+++|.+|||||||.+.+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            355789999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00012  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|.|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.11  E-value=0.00013  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68999999999999999998653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.11  E-value=0.00016  Score=51.83  Aligned_cols=22  Identities=32%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999988865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00011  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.10  E-value=0.00014  Score=52.48  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~   30 (211)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999998753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.09  E-value=0.00018  Score=51.82  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47999999999999999998763

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.08  E-value=0.00014  Score=52.98  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00015  Score=52.81  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|++|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999999865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00016  Score=53.54  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .|+|+|++|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00016  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|+|.|++|+|||||++.+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.03  E-value=0.0002  Score=50.26  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .-|+++|.||||||||.+.|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00022  Score=51.49  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      -++|+|++|||||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999987643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=0.00062  Score=45.68  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .-|++-|.-|||||||++.+...-
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            458899999999999999987653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.01  E-value=0.00022  Score=51.52  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998763

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00013  Score=52.59  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.00  E-value=0.00025  Score=51.19  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47999999999999999998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00018  Score=51.98  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00015  Score=49.98  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      =|+|+|++|||||||++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00019  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -=|+|+|++||||||+.+.|..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.97  E-value=0.00017  Score=51.60  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|+|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999999753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.96  E-value=0.00021  Score=48.34  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00022  Score=49.38  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.94  E-value=0.00022  Score=48.83  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.93  E-value=0.00023  Score=48.92  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=17.8

Q ss_pred             eeEE-EEcCCCCCHHHHHHHHhh
Q 028237            7 FKYI-IIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~-v~G~~~~GKStli~~l~~   28 (211)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3555 569999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.00046  Score=52.07  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .+|+|.|++|||||||++.|+...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00032  Score=48.78  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=21.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +..--|+|+|++||||||+...|...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999999653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.89  E-value=0.00032  Score=51.14  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~~   30 (211)
                      ++|+|++|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.89  E-value=0.00028  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999888653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.88  E-value=0.00018  Score=52.46  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      +++|+|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999988754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.83  E-value=0.00039  Score=48.04  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++=|+|-|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356689999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.82  E-value=0.00032  Score=47.50  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999998754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.81  E-value=0.00032  Score=51.24  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|+|++|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4799999999999999999865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.81  E-value=0.00039  Score=47.20  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=19.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+-|.|+|.+||||||+.+.|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999988763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00036  Score=48.50  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.78  E-value=0.00017  Score=52.07  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58999999999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.75  E-value=0.00039  Score=47.28  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999999853

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.00039  Score=48.33  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -|+|+|+|||||||+...|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00041  Score=48.85  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -|+|+||+||||+||+++|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.70  E-value=0.0005  Score=50.07  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+.-|++.|+||+|||||.+.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.67  E-value=0.00058  Score=48.29  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +.|+|-|++||||||+.+.|..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00072  Score=47.59  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ++-|+|-|+.|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0003  Score=48.59  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..-|.++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00081  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...+++.|+||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.00086  Score=47.98  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...+++.|+||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999998753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0014  Score=45.15  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++-|+|.|..||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988644

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.001  Score=46.15  Aligned_cols=24  Identities=25%  Similarity=0.565  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-+++++|++|+|||++++.|...
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            347999999999999999888653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0013  Score=48.17  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .=+++++|++|+|||++++.|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999988653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.23  E-value=0.0014  Score=45.34  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..++-|+|-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.16  E-value=0.0014  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ...|++.|++|+|||+|++.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            346999999999999999999753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.12  E-value=0.0016  Score=46.31  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..+++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.07  E-value=0.0017  Score=48.62  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.|+++||+|+|||.|.+.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            35899999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.03  E-value=0.0017  Score=47.03  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0021  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.+++.|++|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.96  E-value=0.0021  Score=44.77  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.002  Score=45.20  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      =|+|.|++||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367789999999999988854

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.94  E-value=0.0016  Score=45.76  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +..+-|.+.|.+|||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456699999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.90  E-value=0.0024  Score=46.08  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.0026  Score=45.98  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .|++.|++|+|||+|++.+...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0021  Score=46.10  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ....+++.|++|+||||+++.+...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3446899999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0028  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999998753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.67  E-value=0.0018  Score=47.06  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      ++|.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0032  Score=44.46  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..+++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            46899999999999999887643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0037  Score=46.57  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..++=|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3468899999999999999888753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0033  Score=45.64  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.|++.|++|+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            36999999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.64  E-value=0.0028  Score=49.72  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      +|+++||+|||||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0034  Score=45.55  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .+++.|++|+|||++++.+...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0038  Score=44.08  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..+++.|++|+||||+++.+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35899999999999999998764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0042  Score=43.38  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0056  Score=42.77  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      =|+|.|..||||||+.+.|....
T Consensus         5 iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHCC
Confidence            47899999999999999886543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0065  Score=44.68  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHh
Q 028237            4 AYLFKYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         4 ~~~~~i~v~G~~~~GKStli~~l~   27 (211)
                      ..++=|+|-|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            456789999999999999987763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.34  E-value=0.0084  Score=41.71  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      +=|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0053  Score=42.52  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      -+.|.|++|+|||+|+..|..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999876543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0047  Score=44.99  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            36999999999999999999765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.22  E-value=0.0073  Score=41.05  Aligned_cols=25  Identities=36%  Similarity=0.607  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+...|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999987644

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.001  Score=45.87  Aligned_cols=18  Identities=33%  Similarity=0.610  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028237           10 IIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus        10 ~v~G~~~~GKStli~~l~   27 (211)
                      +|+|++|||||||+..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999974

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0059  Score=42.77  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998887653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.09  E-value=0.0043  Score=47.78  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -+++++|++|+|||++++.|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.05  E-value=0.0082  Score=40.80  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+...|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999986543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0065  Score=42.97  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -+.|.|++|+|||+|+..|....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999987654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0044  Score=43.97  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -.|+|-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.00  E-value=0.0042  Score=45.88  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028237           10 IIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus        10 ~v~G~~~~GKStli~~l~   27 (211)
                      +|+|+.||||||+++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            688999999999999873

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.083  Score=37.13  Aligned_cols=22  Identities=18%  Similarity=0.111  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|.|++|+|||+|..+|...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.87  E-value=0.01  Score=45.86  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|.|+.||||||.++.++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.77  E-value=0.0043  Score=46.67  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028237            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~   27 (211)
                      .|+++|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            58999999999999999885

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.76  E-value=0.0083  Score=42.72  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      -++|.|++|+|||+|...|....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.70  E-value=0.0042  Score=45.71  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=15.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028237            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~   27 (211)
                      =|+|.|.+||||||+.+.|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            39999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.64  E-value=0.0095  Score=43.54  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .-|+|.|..|.|||||...+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.64  E-value=0.012  Score=39.62  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhhCCC
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTDKRF   31 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999887654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.42  E-value=0.011  Score=44.97  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -+++.|+||+|||+|.+.+..
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.28  E-value=0.013  Score=41.53  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|.|++|+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.012  Score=41.67  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      --|+|=|..||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3588999999999999999875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.013  Score=41.07  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      =|+|=|..||||||+++.|..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999988864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.14  E-value=0.013  Score=44.61  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      -+++++||+|||||-|.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            4699999999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.013  Score=44.88  Aligned_cols=18  Identities=39%  Similarity=0.599  Sum_probs=16.3

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028237           10 IIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus        10 ~v~G~~~~GKStli~~l~   27 (211)
                      +|+|+.|||||+|+.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999974

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.87  E-value=0.017  Score=40.74  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      -++|.|++|+|||+|+..+..+
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.016  Score=43.14  Aligned_cols=21  Identities=33%  Similarity=0.697  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++++|++|+|||.|.+.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.51  E-value=0.026  Score=42.31  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.46  E-value=0.023  Score=42.49  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            467899999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.43  E-value=0.02  Score=42.96  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhhC
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|.|=|.-||||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.025  Score=39.28  Aligned_cols=21  Identities=19%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.35  E-value=0.024  Score=42.24  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344699999999999998754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.025  Score=40.13  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.24  E-value=0.025  Score=39.99  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999854

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.16  E-value=0.026  Score=39.39  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -+.|.|++|+|||+|...+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999987653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.13  E-value=0.028  Score=39.28  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      +.|.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.04  E-value=0.022  Score=39.35  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      -+++.|++++|||.|++.|..
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            578999999999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.96  E-value=0.03  Score=40.50  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.035  Score=42.85  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      .++|+|.+|+|||++++.++..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            5899999999999998877643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.41  E-value=0.026  Score=41.23  Aligned_cols=15  Identities=20%  Similarity=0.638  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 028237            9 YIIIGDTGVGKSCLL   23 (211)
Q Consensus         9 i~v~G~~~~GKStli   23 (211)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688999999999754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.09  E-value=0.034  Score=40.94  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 028237            9 YIIIGDTGVGKSCLL   23 (211)
Q Consensus         9 i~v~G~~~~GKStli   23 (211)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.98  E-value=0.045  Score=39.33  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      .+|.|++|+|||+|+..+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999988753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.052  Score=39.68  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.81  E-value=1.1  Score=30.58  Aligned_cols=76  Identities=14%  Similarity=0.140  Sum_probs=49.6

Q ss_pred             EEEEEEeCCCcchhhhhhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCCCCHHH
Q 028237           55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVSTEE  133 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~  133 (211)
                      +.+.++|+++....  .....+..+|.++++...+ ..+...+......+...   +.|++ +|+|+.+..+. ......
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhcccccccc-hhhhHH
Confidence            56889999876433  3444577899999999876 55556666655555443   66765 88999987543 334444


Q ss_pred             HHHH
Q 028237          134 GEQF  137 (211)
Q Consensus       134 ~~~~  137 (211)
                      .+++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4444

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.99  E-value=0.07  Score=38.55  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      --+.+.|++++|||+|++.+..
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3578899999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.14  E-value=0.075  Score=39.38  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhh
Q 028237            8 KYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~   28 (211)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            468889999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.57  E-value=0.11  Score=37.41  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      +.|.|++++|||+|+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            578999999999999888754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.19  E-value=0.1  Score=37.78  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.12  Score=39.04  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=15.5

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028237            8 KYIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l   26 (211)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3678899999999987543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.14  Score=36.09  Aligned_cols=18  Identities=39%  Similarity=0.364  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028237            9 YIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l   26 (211)
                      ++|-|++.+||||+++.+
T Consensus        44 ~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHH
Confidence            678899999999999986

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.37  E-value=0.15  Score=35.77  Aligned_cols=18  Identities=39%  Similarity=0.444  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028237            9 YIIIGDTGVGKSCLLLQF   26 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l   26 (211)
                      ++|-|++.+||||+++.+
T Consensus        38 ~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEESCSSSSHHHHHHHH
T ss_pred             EEEECCCccccchhhhhh
Confidence            689999999999999985

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.85  E-value=0.14  Score=34.54  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.67  E-value=0.27  Score=30.76  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhh
Q 028237            6 LFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         6 ~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .+-|.+-|..|+||+||.+.|..
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHH
Confidence            47789999999999999999853

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.61  E-value=0.21  Score=35.45  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhh
Q 028237            7 FKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         7 ~~i~v~G~~~~GKStli~~l~~   28 (211)
                      .-|+|.|.+|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999888754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.13  E-value=0.24  Score=35.27  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCcchhhh-hhHHhhcCCcEEEEEEECCCHhhHHHHHHHHHHHHHhcC-CCCc-EEEEEecCCCCCCCCCCH
Q 028237           55 IKLQIWDTAGQESFRS-ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMT-IMLIGNKCDLAHRRAVST  131 (211)
Q Consensus        55 ~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~p-~ivv~nK~D~~~~~~~~~  131 (211)
                      +.+.+.|+|+.-.... ........+|.++++... +..++..+......+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            5588889987543322 233334567888777776 46667666666666655443 2333 347789987643    35


Q ss_pred             HHHHHHHHHcCCcEEE
Q 028237          132 EEGEQFAKEHGLIFME  147 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~  147 (211)
                      +..+++.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5677788888877554

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=84.95  E-value=2.5  Score=27.92  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             eeeeEEEEcC-CCCCHHHHHHHHhhCC-CCCCCCCCceeEEEEEEEEECCEEEEEEEEeCCCcchh--------------
Q 028237            5 YLFKYIIIGD-TGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------------   68 (211)
Q Consensus         5 ~~~~i~v~G~-~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------------   68 (211)
                      .++||.|+|. .+.|-+.+. .|..+. +...                  ..+.+.+.|.+.....              
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~-~La~g~v~g~~------------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLF-KLASGEVFGQD------------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHH-HHHHTTTTCTT------------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCcEEEEECCCcHHHHHHHH-HHHcCcccCCC------------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            4689999996 778866554 444432 2111                  1245566676652211              


Q ss_pred             -------hhhhHHhhcCCcEEEEEEECCCHh---hHHH-------HHHHHHHHHHhcCCCCcEEEEEecCC
Q 028237           69 -------RSITRSYYRGAAGALLVYDITRRE---TFNH-------LASWLEDARQHANANMTIMLIGNKCD  122 (211)
Q Consensus        69 -------~~~~~~~~~~~d~~i~v~d~~~~~---~~~~-------~~~~~~~l~~~~~~~~p~ivv~nK~D  122 (211)
                             ..-....+.++|++|++-......   ..+.       +..+...+..+...+.-++++.|=+|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                   011233467888888887654311   1111       22344455555544566677777666

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.55  E-value=0.24  Score=35.99  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~   29 (211)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998877644

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.33  E-value=0.22  Score=36.61  Aligned_cols=14  Identities=36%  Similarity=0.679  Sum_probs=12.9

Q ss_pred             EEEcCCCCCHHHHH
Q 028237           10 IIIGDTGVGKSCLL   23 (211)
Q Consensus        10 ~v~G~~~~GKStli   23 (211)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999975

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.89  E-value=2.6  Score=27.62  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=37.6

Q ss_pred             CCHhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 028237           89 TRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  150 (211)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  150 (211)
                      +|+.+++........+.  ...+.|+|+++......    ...+++.+|++..++|++.+..
T Consensus         3 sd~~~l~~~v~~~~~~l--~~AkrPvIi~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~~   58 (175)
T d1zpda1           3 SDEASLNAAVDETLKFI--ANRDKVAVLVGSKLRAA----GAEEAAVKFTDALGGAVATMAA   58 (175)
T ss_dssp             CCHHHHHHHHHHHHHHH--TTCSCEEEEECTTTTTT----TCHHHHHHHHHHHCCCEEEEGG
T ss_pred             CChHHHHHHHHHHHHHH--HcCCCEEEEECcCcccc----chHHHHHHHHHhhceeEEeccc
Confidence            45555544443332222  23489999999888752    3588899999999999886553

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.58  E-value=0.35  Score=34.73  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 028237            9 YIIIGDTGVGKSCLLLQFTDK   29 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~~   29 (211)
                      +.|.|++++|||+|+..+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            568999999999999888754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.46  E-value=0.24  Score=36.48  Aligned_cols=15  Identities=33%  Similarity=0.585  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 028237            9 YIIIGDTGVGKSCLL   23 (211)
Q Consensus         9 i~v~G~~~~GKStli   23 (211)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            378999999999975

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.24  E-value=0.32  Score=35.08  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhhCC
Q 028237            8 KYIIIGDTGVGKSCLLLQFTDKR   30 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~~~~   30 (211)
                      |++|+|.+|+|||+|+..+....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            68899999999999998765543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.23  E-value=0.38  Score=34.58  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 028237            9 YIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         9 i~v~G~~~~GKStli~~l~~   28 (211)
                      +.|.|++++|||+|+..+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999877764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.83  E-value=0.28  Score=36.19  Aligned_cols=14  Identities=36%  Similarity=0.679  Sum_probs=13.0

Q ss_pred             EEEcCCCCCHHHHH
Q 028237           10 IIIGDTGVGKSCLL   23 (211)
Q Consensus        10 ~v~G~~~~GKStli   23 (211)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            59999999999986

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.49  E-value=0.31  Score=30.65  Aligned_cols=20  Identities=25%  Similarity=0.117  Sum_probs=16.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028237            8 KYIIIGDTGVGKSCLLLQFT   27 (211)
Q Consensus         8 ~i~v~G~~~~GKStli~~l~   27 (211)
                      ..+|.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35778999999999886654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.50  E-value=0.49  Score=32.18  Aligned_cols=24  Identities=13%  Similarity=0.052  Sum_probs=21.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhh
Q 028237            5 YLFKYIIIGDTGVGKSCLLLQFTD   28 (211)
Q Consensus         5 ~~~~i~v~G~~~~GKStli~~l~~   28 (211)
                      ....+++-|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988765

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.98  E-value=0.52  Score=31.93  Aligned_cols=19  Identities=26%  Similarity=0.553  Sum_probs=16.4

Q ss_pred             eEEEEcCC-CCCHHHHHHHH
Q 028237            8 KYIIIGDT-GVGKSCLLLQF   26 (211)
Q Consensus         8 ~i~v~G~~-~~GKStli~~l   26 (211)
                      |+.|.|.. |+||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            78899996 99999988665