Citrus Sinensis ID: 028239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIARSIVCGGCAA
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccEEEHHHHcccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHccccHHHHHHccccccEEEEEEcccccccHHHHHHHcccccccHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHHcccccccHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msaskfikcvtvgdgavgkTCMLICYtsnkfptdyiptvfdnfsanvavdgsivnlglwdtagqedysrlrplsyrgaDIFVLAFSLISRASYENVLKKWMPElrrfapnvpivLVGTKldlredrgyladhvgsnvittAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMMARKkrhrrsscsiarsivcggcaa
Flexible Loop (DISEMBL)
msaskfikcvtvgdgavgkTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPelrrfapnvpIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAikvvlqpprrkemmarkkrhrrsscsiarsivcggcaa
Low Complexity Region (SEG)
MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIARSIVCGGCAA
Disordered region (IsUnstruct)
*****FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL***********************RSIVCG****
Disordered Region (DISOPRED)
****KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG**********ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL***********************RSIVCGGCAA
Disordered Region (DISEMBL)
MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR*****************IARSIVCGGCAA
Disordered Region (DISPRO)
*SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIARSIVCGGCAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
O82480	209	Rac-like GTP-binding prot	yes	no	0.985	0.995	0.919	1e-111
Q68Y52	214	Rac-like GTP-binding prot	yes	no	0.966	0.953	0.864	1e-103
Q9SSX0	214	Rac-like GTP-binding prot	no	no	0.966	0.953	0.805	5e-96
Q6Z808	214	Rac-like GTP-binding prot	no	no	0.867	0.855	0.836	4e-90
Q67VP4	215	Rac-like GTP-binding prot	no	no	0.853	0.837	0.838	2e-88
Q6Z7L8	197	Rac-like GTP-binding prot	no	no	0.909	0.974	0.786	2e-88
O82481	215	Rac-like GTP-binding prot	no	no	0.976	0.958	0.757	3e-88
Q9SU67	208	Rac-like GTP-binding prot	no	no	0.848	0.860	0.849	4e-88
Q40220	196	Rac-like GTP-binding prot	N/A	no	0.848	0.913	0.837	2e-87
O04369	197	Rac-like GTP-binding prot	N/A	no	0.928	0.994	0.785	3e-87

>sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/211 (91%), Positives = 201/211 (95%), Gaps = 3/211 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+GYLADH  +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 121 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 178

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE+  R+K HRRS CSIA SIVCGGC A
Sbjct: 179 PRRKEVPRRRKNHRRSGCSIA-SIVCGGCTA 208

Acts as a negative regulator of abscisic acid (ABA) responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/207 (86%), Positives = 193/207 (93%), Gaps = 3/207 (1%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
           A+KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV+VDG+IVNLGLWDTA
Sbjct: 4   ATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTA 63

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
           GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL
Sbjct: 64  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 123

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 182
           R+ R YLADH  ++ ITTAQGEELRKQIGAAAYIECSSKTQQN+KAVFDTAIKVVLQPPR
Sbjct: 124 RDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVLQPPR 183

Query: 183 RK--EMMARKKRHRRSSCSIARSIVCG 207
           R+    MARKK  R + CS+ ++++CG
Sbjct: 184 RRGETTMARKKTRRSTGCSL-KNLMCG 209

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SSX0|RAC1_ORYSJ Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1

 Score =  350 bits (897), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 184/206 (89%), Gaps = 2/206 (0%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +A++FIKCVTVGDGAVGKTCMLICYT NKFPTDYIPTVFDNFSANV+VDGS+VNLGLWDT
Sbjct: 6   AATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDT 65

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDYSRLRPLSYRGAD+F+L+FSLISRASYENV KKWMPELRRFAP VP+VLVGTKLD
Sbjct: 66  AGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLD 125

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           LREDR YLADH  S++ITT QGEELRK IGA AYIECSSKTQ+N+KAVFDTAIKVVLQPP
Sbjct: 126 LREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVLQPP 185

Query: 182 RRKEMMARKKRHRRSSCSIARSIVCG 207
           R K++   +K+ + SS    R   CG
Sbjct: 186 RHKDVT--RKKLQSSSNRPVRRYFCG 209

Small GTPase playing a general role in disease resistance signaling pathway. Acts downstream of heterotrimeric G protein alpha subunit. Regulates cell death and reactive oxygen species production, probably through NADPH oxidase. Also involved in sphingolipid elicitor (SE)-dependent defense signaling. Activates phytoalexin production and alters defense-related genes. Down-regulates metallothionein 2b, a reactive oxygen scavenger.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z808|RAC3_ORYSJ Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1

 Score =  330 bits (846), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 168/183 (91%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           SAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV VD + VNLGLWDT
Sbjct: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY+RLRPLSYRGAD+FVLAFSL+SRASYEN++KKW+PEL+ +AP VPIVLVGTKLD
Sbjct: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           LRED+ YL DH G   +TTAQGEELRKQIGAA YIECSSKTQQNVK VFD AIKVV+QPP
Sbjct: 124 LREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVIQPP 183

Query: 182 RRK 184
            ++
Sbjct: 184 TKQ 186

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67VP4|RAC4_ORYSJ Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1

 Score =  324 bits (831), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/180 (83%), Positives = 165/180 (91%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           SAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDY+PTVFDNFSANV VDG+ VNLGLWDT
Sbjct: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGTTVNLGLWDT 63

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY+RLRPLSYRGAD+FVLAFSL+SRASYENV+KKW+PEL+ +AP VPIVLVGTKLD
Sbjct: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGTKLD 123

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           LRED+ YL DH     +TTAQGEELRK IGA  YIECSSKTQQNVKAVFD AIKVV++PP
Sbjct: 124 LREDKHYLLDHPSLVPVTTAQGEELRKHIGATCYIECSSKTQQNVKAVFDAAIKVVIKPP 183

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  324 bits (831), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MS ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYEN+ KKW+PELR +APNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLRED+ +  DH G   I+TAQGEEL++ IGAAAYIECSSKTQQNVK+VFD+AIKVVL P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

Query: 181 PRRKEMMARKKR 192
           P+ K+   RK+R
Sbjct: 181 PKPKKKNTRKQR 192

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1

 Score =  324 bits (830), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 182/206 (88%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV V+G+ VNLGLWDT
Sbjct: 4   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY+RLRPLSYRGAD+FVL+FSL+SRASYENV KKW+PEL+ FAP VP+VLVGTKLD
Sbjct: 64  AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           LRED+ YLADH G + +TTAQGEELRK IGA  YIECSSKTQQNVKAVFD+AIK V++P 
Sbjct: 124 LREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIKPL 183

Query: 182 RRKEMMARKKRHRRSSCSIARSIVCG 207
            +++   +KK+ ++S+     +++CG
Sbjct: 184 VKQKEKTKKKKKQKSNHGCLSNVLCG 209

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU67|RAC8_ARATH Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2

 Score =  323 bits (829), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 152/179 (84%), Positives = 164/179 (91%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS NV V+G  VNLGLWDT
Sbjct: 4   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDT 63

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY+RLRPLSYRGAD+FVLAFSLISRASYENV KKW+PEL+ FAP VPIVLVGTK+D
Sbjct: 64  AGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMD 123

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           LREDR YL+DH G + +TT+QGEELRK IGA  YIECSSKTQQNVKAVFD AIKVV++P
Sbjct: 124 LREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVIKP 182

Acts as a negative regulator of abscisic acid (ABA) responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40220|RAC2_LOTJA Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1

 Score =  321 bits (823), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/179 (83%), Positives = 163/179 (91%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MS ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDGS VNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSL+SRASYEN+ KKW+PELR +AP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           DLREDR YL DH G+  ITTAQGEEL+K IGAA Y+ECSSKTQQNVKAVFD AIKVVLQ
Sbjct: 121 DLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQ 179

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  320 bits (821), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/200 (78%), Positives = 174/200 (87%), Gaps = 4/200 (2%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV VDGS VNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYEN+ KKW+PELR +AP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+ +LADH G+  ITTAQGEELRK IGA AYIECSSKTQQNVKAVFD AIKVVLQ 
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ- 179

Query: 181 PRRKEMMARKKRHRRSSCSI 200
                   +KKR  + SCSI
Sbjct: 180 ---PPKQKKKKREAQKSCSI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
388509424	210	unknown [Lotus japonicus]	0.990	0.995	0.947	1e-112
225445190	210	PREDICTED: rac-like GTP-binding protein	0.990	0.995	0.947	1e-112
388496398	210	unknown [Lotus japonicus]	0.990	0.995	0.943	1e-112
356520551	210	PREDICTED: rac-like GTP-binding protein	0.990	0.995	0.938	1e-112
356531291	212	PREDICTED: rac-like GTP-binding protein	0.990	0.985	0.938	1e-111
357500687	209	Rac-like GTP-binding protein [Medicago t	0.990	1.0	0.943	1e-111
388519279	209	unknown [Medicago truncatula]	0.990	1.0	0.938	1e-110
224143580	209	predicted protein [Populus trichocarpa]	0.990	1.0	0.938	1e-110
297803156	209	hypothetical protein ARALYDRAFT_913616 [	0.985	0.995	0.924	1e-110
15235495	209	Rac-like GTP-binding protein ARAC7 [Arab	0.985	0.995	0.919	1e-109

>gi|388509424|gb|AFK42778.1| unknown [Lotus japonicus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/211 (94%), Positives = 203/211 (96%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 2   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 61

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 62  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 121

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLREDRGY ADH+GSNVIT+A+GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 122 DLREDRGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE MA KKRHRRS CS    IVCGGCAA
Sbjct: 182 PRRKE-MASKKRHRRSGCSFV-GIVCGGCAA 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445190|ref|XP_002284205.1| PREDICTED: rac-like GTP-binding protein ARAC7 isoform 1 [Vitis vinifera] gi|147781539|emb|CAN73708.1| hypothetical protein VITISV_023715 [Vitis vinifera] gi|297738799|emb|CBI28044.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/211 (94%), Positives = 205/211 (97%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLRED+GYLADH+GSNVIT+AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 121 DLREDKGYLADHMGSNVITSAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE +ARKKR R + CSI  SIVCGGCAA
Sbjct: 181 PRRKE-VARKKRRRSTGCSIV-SIVCGGCAA 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496398|gb|AFK36265.1| unknown [Lotus japonicus]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/211 (94%), Positives = 202/211 (95%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 2   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 61

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF PNVPIVLVGTKL
Sbjct: 62  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFTPNVPIVLVGTKL 121

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLREDRGY ADH+GSNVIT+A+GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 122 DLREDRGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE MA KKRHRRS CS    IVCGGCAA
Sbjct: 182 PRRKE-MASKKRHRRSGCSFV-GIVCGGCAA 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520551|ref|XP_003528925.1| PREDICTED: rac-like GTP-binding protein ARAC7-like [Glycine max]

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/211 (93%), Positives = 205/211 (97%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M+ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 2   MNASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 61

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 62  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 121

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLREDRGY+ADH+GS+VIT+A+GEELRKQIGA AYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 122 DLREDRGYVADHMGSSVITSAEGEELRKQIGAVAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE MARKKRHRRS CS   SI+CGGCAA
Sbjct: 182 PRRKE-MARKKRHRRSGCSFV-SIMCGGCAA 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531291|ref|XP_003534211.1| PREDICTED: rac-like GTP-binding protein ARAC7-like [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/213 (93%), Positives = 206/213 (96%), Gaps = 4/213 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M+ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 2   MNASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 61

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 62  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 121

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL-- 178
           DLREDRGY+ADH+GSNVIT+A+GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  
Sbjct: 122 DLREDRGYVADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 179 QPPRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           QPPRRKE MARKKRHRRS CS   SI+CGGCAA
Sbjct: 182 QPPRRKE-MARKKRHRRSGCSFV-SIMCGGCAA 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500687|ref|XP_003620632.1| Rac-like GTP-binding protein [Medicago truncatula] gi|145700967|gb|ABH04325.2| ROP-like protein [Medicago truncatula] gi|355495647|gb|AES76850.1| Rac-like GTP-binding protein [Medicago truncatula]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/211 (94%), Positives = 201/211 (95%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLREDRGY ADH G NVIT+A+GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 121 DLREDRGYFADHTGYNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE M RKKR RRS CS A  IVCGGCAA
Sbjct: 181 PRRKE-MPRKKRQRRSGCSFA-GIVCGGCAA 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519279|gb|AFK47701.1| unknown [Medicago truncatula]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/211 (93%), Positives = 201/211 (95%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLREDRGY ADH G NVIT+A+GEELR+QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 121 DLREDRGYFADHTGYNVITSAEGEELREQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE M RKKR RRS CS A  IVCGGCAA
Sbjct: 181 PRRKE-MPRKKRQRRSGCSFA-GIVCGGCAA 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143580|ref|XP_002325004.1| predicted protein [Populus trichocarpa] gi|222866438|gb|EEF03569.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/211 (93%), Positives = 202/211 (95%), Gaps = 2/211 (0%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLREDRGYL DH+ SNVIT AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV+QP
Sbjct: 121 DLREDRGYLVDHMNSNVITFAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVIQP 180

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE MARKKR R + C+IA SIVCGGC A
Sbjct: 181 PRRKE-MARKKRSRSAGCTIA-SIVCGGCVA 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803156|ref|XP_002869462.1| hypothetical protein ARALYDRAFT_913616 [Arabidopsis lyrata subsp. lyrata] gi|297315298|gb|EFH45721.1| hypothetical protein ARALYDRAFT_913616 [Arabidopsis lyrata subsp. lyrata]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/211 (92%), Positives = 202/211 (95%), Gaps = 3/211 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+GYLADH  +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 121 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 178

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE+  RKK+HRRS CSIA SIVCGGC A
Sbjct: 179 PRRKEVTRRKKKHRRSGCSIA-SIVCGGCTA 208

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235495|ref|NP_194624.1| Rac-like GTP-binding protein ARAC7 [Arabidopsis thaliana] gi|51701729|sp|O82480.1|RAC7_ARATH RecName: Full=Rac-like GTP-binding protein ARAC7; AltName: Full=GTPase protein ROP9 gi|7211208|gb|AAF40246.1|AF115474_1 Arac7 [Arabidopsis thaliana] gi|3702962|gb|AAC63013.1| rac GTP binding protein Arac7 [Arabidopsis thaliana] gi|4972084|emb|CAB43909.1| rac GTP binding protein Arac7 [Arabidopsis thaliana] gi|7269793|emb|CAB79653.1| rac GTP binding protein Arac7 [Arabidopsis thaliana] gi|94442473|gb|ABF19024.1| At4g28950 [Arabidopsis thaliana] gi|332660166|gb|AEE85566.1| Rac-like GTP-binding protein ARAC7 [Arabidopsis thaliana]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/211 (91%), Positives = 201/211 (95%), Gaps = 3/211 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+GYLADH  +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 121 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 178

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE+  R+K HRRS CSIA SIVCGGC A
Sbjct: 179 PRRKEVPRRRKNHRRSGCSIA-SIVCGGCTA 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2123548	209	ROP9 "RHO-related protein from	0.985	0.995	0.919	1.7e-100
UNIPROTKB|Q9SSX0	214	RAC1 "Rac-like GTP-binding pro	0.985	0.971	0.800	1.4e-87
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.933	0.920	0.793	1.5e-83
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.976	0.958	0.757	3.9e-83
TAIR|locus:2097905	208	ROP10 "RHO-related protein fro	0.957	0.971	0.782	6.4e-83
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.928	0.994	0.775	6.6e-81
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.933	0.994	0.76	1.1e-80
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.928	0.994	0.765	1.4e-80
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.909	0.979	0.781	1.6e-79
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.938	0.985	0.752	1.6e-79

TAIR|locus:2123548 ROP9 "RHO-related protein from plants 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 194/211 (91%), Positives = 201/211 (95%)

Query:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 60

Query:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 120

Query:   121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             DLR+D+GYLADH  +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct:   121 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 178

Query:   181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
             PRRKE+  R+K HRRS CSIA SIVCGGC A
Sbjct:   179 PRRKEVPRRRKNHRRSGCSIA-SIVCGGCTA 208

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

UNIPROTKB|Q9SSX0 RAC1 "Rac-like GTP-binding protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 169/211 (80%), Positives = 186/211 (88%)

Query:     2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
             +A++FIKCVTVGDGAVGKTCMLICYT NKFPTDYIPTVFDNFSANV+VDGS+VNLGLWDT
Sbjct:     6 AATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDT 65

Query:    62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
             AGQEDYSRLRPLSYRGAD+F+L+FSLISRASYENV KKWMPELRRFAP VP+VLVGTKLD
Sbjct:    66 AGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLD 125

Query:   122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
             LREDR YLADH  S++ITT QGEELRK IGA AYIECSSKTQ+N+KAVFDTAIKVVLQPP
Sbjct:   126 LREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVLQPP 185

Query:   182 RRKEMMARKKRHRRSSCSIARSIVCGG-CAA 211
             R K++  RKK    S+  + R   CG  C A
Sbjct:   186 RHKDV-TRKKLQSSSNRPVRRYF-CGSACFA 214

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 158/199 (79%), Positives = 176/199 (88%)

Query:     2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
             SAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV VD + VNLGLWDT
Sbjct:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query:    62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
             AGQEDY+RLRPLSYRGAD+FVLAFSL+SRASYEN++KKW+PEL+ +AP VPIVLVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query:   122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
             LRED+ YL DH G   +TTAQGEELRKQIGAA YIECSSKTQQNVK VFD AIKVV+QPP
Sbjct:   124 LREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVIQPP 183

Query:   182 RRKEMMARKKRHRRSSCSI 200
              ++    +KK+  R  CS+
Sbjct:   184 TKQR--EKKKKKSRQGCSM 200

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 156/206 (75%), Positives = 182/206 (88%)

Query:     2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
             SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV V+G+ VNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query:    62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
             AGQEDY+RLRPLSYRGAD+FVL+FSL+SRASYENV KKW+PEL+ FAP VP+VLVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123

Query:   122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
             LRED+ YLADH G + +TTAQGEELRK IGA  YIECSSKTQQNVKAVFD+AIK V++P 
Sbjct:   124 LREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIKPL 183

Query:   182 RRKEMMARKKRHRRSSCSIARSIVCG 207
              +++   +KK+ ++S+     +++CG
Sbjct:   184 VKQKEKTKKKKKQKSNHGCLSNVLCG 209

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

TAIR|locus:2097905 ROP10 "RHO-related protein from plants 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 162/207 (78%), Positives = 180/207 (86%)

Query:     2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
             SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS NV V+G  VNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDT 63

Query:    62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
             AGQEDY+RLRPLSYRGAD+FVLAFSLISRASYENV KKW+PEL+ FAP VPIVLVGTK+D
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMD 123

Query:   122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
             LREDR YL+DH G + +TT+QGEELRK IGA  YIECSSKTQQNVKAVFD AIKVV++P 
Sbjct:   124 LREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVIKPA 183

Query:   182 -RRKEMMARKKRHRRSSCSIARSIVCG 207
              ++KE   +KK+  RS C    +I+CG
Sbjct:   184 VKQKEK--KKKQKPRSGC--LSNILCG 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 155/200 (77%), Positives = 175/200 (87%)

Query:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query:   121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             DLR+D+ +  DH G+  ITTAQGEELRKQIGA  YIECSSKTQ NVK VFD AIKVVLQP
Sbjct:   121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP 180

Query:   181 PRRKEMMARKKRHRRSSCSI 200
             P+ K    +KK+ +R +CSI
Sbjct:   181 PKAK----KKKKAQRGACSI 196

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 152/200 (76%), Positives = 177/200 (88%)

Query:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV VDG+ +NLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             TAGQEDY+RLRPLSYRGAD+F+LAFSL+S+ASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query:   121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             DLR+D+ + A+H G+  I+TAQGEEL+K IGA AYIECS+KTQQNVKAVFD AIKVVLQP
Sbjct:   121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query:   181 PRRKEMMARKKRHRRSSCSI 200
             P+ K+   +KKR  +  CSI
Sbjct:   181 PKNKK---KKKRKSQKGCSI 197

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 153/200 (76%), Positives = 176/200 (88%)

Query:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             MSAS+F+KCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+GS VNLGLWD
Sbjct:     1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPIVLVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             DLR+D+ +  DH G+  ITTAQGEELRKQIGA  YIECSSKTQ+NVKAVFD AI+VVLQP
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query:   181 PRRKEMMARKKRHRRSSCSI 200
             P++K    +KK   + +CSI
Sbjct:   181 PKQK----KKKSKAQKACSI 196

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 150/192 (78%), Positives = 169/192 (88%)

Query:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query:   121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             DLR+D+ +  DH G+  ITT QGEEL+K IG+  YIECSSKTQQNVKAVFD AIKVVLQP
Sbjct:   121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query:   181 PRRKEMMARKKR 192
             P++K+    K R
Sbjct:   181 PKQKKKKKNKNR 192

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 149/198 (75%), Positives = 171/198 (86%)

Query:     1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             MS ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDGS VNLGLWD
Sbjct:     1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query:    61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYEN+ KKW+PEL+ +AP +PIVLVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query:   121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             DLR+D+ +L DH G+  ITTAQGEELRK IGA  Y+ECSSKTQQNVKAVFDTAI+V L+P
Sbjct:   121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

Query:   181 PRRKEMMARKKRHRRSSC 198
             P+ K+ +   K  R   C
Sbjct:   181 PKAKKKIKPLKTKRSRIC 198

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.5685	0.8862	0.9639	yes	no
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.7864	0.9099	0.9746	no	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.6020	0.8672	0.9531	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.8388	0.8530	0.8372	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.6020	0.8672	0.9531	yes	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8491	0.8483	0.8605	no	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8379	0.8483	0.9132	N/A	no
C4YDI6	CDC42_CANAW	No assigned EC number	0.5469	0.8483	0.9371	N/A	no
P84097	RHOG_CRICR	No assigned EC number	0.5909	0.8246	0.9109	N/A	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.7865	0.8436	0.9035	no	no
P62998	RAC1_BOVIN	No assigned EC number	0.6020	0.8672	0.9531	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.6020	0.8672	0.9531	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.7572	0.9763	0.9581	no	no
O82480	RAC7_ARATH	No assigned EC number	0.9194	0.9857	0.9952	yes	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.8647	0.9668	0.9532	yes	no
Q41253	RAC13_GOSHI	No assigned EC number	0.7977	0.8436	0.9081	N/A	no
Q9SSX0	RAC1_ORYSJ	No assigned EC number	0.8058	0.9668	0.9532	no	no
Q38903	RAC2_ARATH	No assigned EC number	0.7988	0.8483	0.8905	no	no
Q38902	RAC1_ARATH	No assigned EC number	0.7977	0.8436	0.9035	no	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8146	0.8436	0.9081	N/A	no
Q24814	RACA_ENTHI	No assigned EC number	0.5795	0.8246	0.8877	N/A	no
Q24816	RACC_ENTHI	No assigned EC number	0.5408	0.8720	0.9484	N/A	no
Q9XGU0	RAC9_ARATH	No assigned EC number	0.7243	0.8767	0.8851	no	no
O04369	RAC1_LOTJA	No assigned EC number	0.785	0.9289	0.9949	N/A	no
P48554	RAC2_DROME	No assigned EC number	0.5789	0.8672	0.9531	yes	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.8146	0.8436	0.9035	no	no
O76321	RECG_ENTHI	No assigned EC number	0.5804	0.8151	0.8643	N/A	no
Q35638	RHO1_PEA	No assigned EC number	0.8033	0.8436	0.9035	N/A	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8360	0.8672	0.8551	no	no
P63001	RAC1_MOUSE	No assigned EC number	0.6020	0.8672	0.9531	yes	no
P92978	RAC11_ARATH	No assigned EC number	0.8089	0.8436	0.9035	no	no
Q38937	RAC5_ARATH	No assigned EC number	0.8089	0.8436	0.9081	no	no
Q38912	RAC3_ARATH	No assigned EC number	0.8011	0.8578	0.9141	no	no
Q38919	RAC4_ARATH	No assigned EC number	0.8068	0.8341	0.9025	no	no
Q39435	RAC1_BETVU	No assigned EC number	0.8202	0.8436	0.9035	N/A	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.8314	0.8436	0.9035	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-130
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-106
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-105
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-87
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-84
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-75
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-75
pfam00071	162	pfam00071, Ras, Ras family	2e-73
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	9e-73
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-69
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-68
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-60
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-55
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-53
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	8e-51
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-43
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-42
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	9e-42
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-40
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-37
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-36
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-36
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	9e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-32
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-32
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-31
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-31
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-31
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-31
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-29
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-29
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-28
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-28
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-28
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-28
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-28
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-27
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-27
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-27
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-26
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-25
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-25
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-24
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-24
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-24
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-24
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	7e-24
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-23
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-23
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-23
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-22
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-22
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-22
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-22
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-20
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-20
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-20
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-20
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-19
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-19
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-18
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-17
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-17
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-16
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-16
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-15
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-15
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-15
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	5e-15
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-14
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-13
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-12
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	6e-11
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-04
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	0.003
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.004

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  363 bits (934), Expect = e-130
 Identities = 149/173 (86%), Positives = 161/173 (93%)

Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65
           FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           DY+RLRPLSYRGAD+F+LAFSLIS+ASYENVLKKW+PELR +AP VPIVLVGTKLDLR+D
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           + + ADH G+  ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD AIKVVL
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  301 bits (774), Expect = e-106
 Identities = 106/171 (61%), Positives = 131/171 (76%), Gaps = 1/171 (0%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IK V VGDGAVGKTC+LI YT+NKFPT+Y+PTVFDN+SANV VDG  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F+L FS+ S +S+ENV  KW PE++ + PNVPI+LVGTK+DLR+D 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 127 GYLADH-VGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176
             L         IT  +GE+L K+IGA  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  300 bits (770), Expect = e-105
 Identities = 102/174 (58%), Positives = 128/174 (73%), Gaps = 2/174 (1%)

Query: 9   CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS 68
            V VGDGAVGKTC+LI YT+N FP DY+PTVF+N+SA+V VDG  V LGLWDTAGQEDY 
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 69  RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY 128
           RLRPLSY   D+F++ FS+ S AS+ENV +KW PE++ F PNVPI+LVGTKLDLR D+  
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 129 LAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           L +        +T  QG+ L K+IGA  Y+ECS+ TQ+ V+ VF+ AI+  L  
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  253 bits (648), Expect = 6e-87
 Identities = 108/173 (62%), Positives = 130/173 (75%), Gaps = 2/173 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  246 bits (631), Expect = 6e-84
 Identities = 93/197 (47%), Positives = 123/197 (62%), Gaps = 7/197 (3%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQE 65
           +K V VGDG  GKTC+L+ Y    FP +Y+PTVF+N+   + V +G I+ L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           DY RLRPLSY   D+ ++ +S+ +  S +NV  KW PE+  F P  PIVLVG K DLR+D
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 126 RGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
           +  ++     G   +T  QGE + K IGA AYIECS+K  +NV  VFD AI V L     
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVAL----S 179

Query: 184 KEMMARKKRHRRSSCSI 200
           K   A +K+ ++  C I
Sbjct: 180 KSGRAARKKKKKKKCVI 196

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  224 bits (572), Expect = 3e-75
 Identities = 86/170 (50%), Positives = 123/170 (72%), Gaps = 2/170 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++ YT+N +PT+Y+PT FDNFS  V VDG  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           + +LRPL Y   D+F+L FS+++ +S++N+ +KW+PE+R+  P  PI+LVGT+ DLR D 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 127 GYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             L      G   ++ ++ + L ++IGA  YIECS+ TQ+N+K VFDTAI
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  223 bits (570), Expect = 9e-75
 Identities = 105/181 (58%), Positives = 124/181 (68%), Gaps = 2/181 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LICYT+N FP +YIPTVFDN+SA  AVDG  V+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLR LSY   ++F++ FS+ S +SYENV  KW PE+    PNVPI+LVGTK DLR D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 127 GYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             L      G   IT  QG  L KQI A  Y+ECS+  Q  VK VF  A++ VL P   K
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK 183

Query: 185 E 185
           +
Sbjct: 184 D 184

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  218 bits (559), Expect = 2e-73
 Identities = 82/174 (47%), Positives = 113/174 (64%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V VGDG VGK+ +LI +T NKFP +YIPT+  D ++  + VDG  V L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRED 125
           +  LRPL YRGA  F+L + + SR S+ENV KKW+ E+ R A  NVPIVLVG K DL + 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R          V++T +GE L K++G   ++E S+KT +NV+  F+   + +L+
Sbjct: 120 R----------VVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  217 bits (555), Expect = 9e-73
 Identities = 92/175 (52%), Positives = 125/175 (71%), Gaps = 4/175 (2%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             + + +  N    IT   GE+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 STI-EKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  209 bits (533), Expect = 2e-69
 Identities = 92/174 (52%), Positives = 132/174 (75%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS+++ AS++NV ++W+PEL+ +APNVP +L+GT++DLR+D 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 127 GYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             LA  + +    IT  QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  206 bits (527), Expect = 2e-68
 Identities = 84/173 (48%), Positives = 118/173 (68%), Gaps = 2/173 (1%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
            + +   +    +   +G  + ++IGA  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  186 bits (473), Expect = 4e-60
 Identities = 77/171 (45%), Positives = 109/171 (63%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKT +L  +T  +FP +Y PTVF+N+  +  VDG  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
            RLRPLSY  A + ++ F++ +  S ENV  KW+ E+RR+ PNVP++LVG K DLR++  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122

Query: 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
              ++     +   Q + + + IGA  Y+ECS+ T + V  VF+ A +  L
Sbjct: 123 AKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAAL 173

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  172 bits (437), Expect = 8e-55
 Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 5/171 (2%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  VD   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           Y  +RPLSY  +D  ++ F  ISR  + ++VLKKW  E+R F PN P++LVG K DLR D
Sbjct: 62  YDNVRPLSYPDSDAVLICFD-ISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

Query: 126 RGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTA 173
              L +  +     ++  QG  L KQIGAAAY+ECS+KT +N V+ VF+ A
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  167 bits (425), Expect = 5e-53
 Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 14/171 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +GD  VGKT +L+ +  NKF  +Y  T+  +F S  + VDG  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
            +  +    YRGA   +L + + +R S+EN+  KW+ EL+ +AP N+PI+LVG K DL +
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           +R           ++T + ++  K+ G   + E S+KT +NV   F++  +
Sbjct: 120 ER----------QVSTEEAQQFAKENG-LLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  162 bits (411), Expect = 8e-51
 Identities = 80/194 (41%), Positives = 108/194 (55%), Gaps = 10/194 (5%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VDG  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
            RLR LSY    + +L FS+ +  S ENV  KW+ E+R   P V +VLV  K DLRE R 
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMM 187
                  ++ I+  +G  + K+I A  Y+ECS+K  + V   F  A +V L         
Sbjct: 122 ERDRG--THTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL--------N 171

Query: 188 ARKKRHRRSSCSIA 201
           AR       +C+IA
Sbjct: 172 ARPPHPHSRACTIA 185

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  141 bits (358), Expect = 5e-43
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I + S +F  +Y PT+ D++   + VDG    L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  D F+L +S+ SR S+E + K    ++ R     +VPIVLVG K DL  +
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEI-KNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R           ++T +GE L ++ G   ++E S+KT  N+  +F+T ++
Sbjct: 120 R----------QVSTEEGEALAEEWG-CPFLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  139 bits (353), Expect = 3e-42
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+ +L  +T  KF   Y  T+  +F +  + VDG  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YRGA   +L + + +R S+EN+ + W+ ELR +A PNV I+LVG K DL E
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R           ++  + E   ++ G   + E S+KT  NV+  F+   + +L+
Sbjct: 120 QR----------QVSREEAEAFAEEHG-LPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  139 bits (351), Expect = 9e-42
 Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 5/170 (2%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
             +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG K DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 128 Y---LADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTA 173
               L++H  + V +  QG  + KQIGAA YIECS+   +N V+ +F  A
Sbjct: 127 TLVELSNHRQTPV-SYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  137 bits (346), Expect = 1e-40
 Identities = 74/194 (38%), Positives = 110/194 (56%), Gaps = 5/194 (2%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + +P  Y+PTVF+N++A+  +D   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
             +RPL+Y  +D  ++ F +    + ++VLKKW  E + F PN  +VLVG KLD+R D  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 128 YLADHVGSNVI--TTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFD--TAIKVVLQPPR 182
            L +     +I  T  QG  L +Q+GA AY+ECSS+  +N V+ VF   T   V  + P 
Sbjct: 123 TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHPS 182

Query: 183 RKEMMARKKRHRRS 196
            K   +R+   R S
Sbjct: 183 LKRSTSRRGLKRIS 196

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  133 bits (336), Expect = 4e-39
 Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWD 60
              K  K V +GDG VGKT +L     ++FP  Y PT+ +   A  +      + L LWD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTK 119
           TAGQE+Y  LRP  YRGA+  ++ +    R S + + ++W+ ELR  AP +VPI+LVG K
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 120 LDLREDRGYLADHV----GSNVITTAQGEELRKQIGAAAYIECSSK--TQQNVKAVFDTA 173
           +DL +++    + +       V+     + +  ++   A +E S+K  T  NV  +F   
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 174 IKVVLQPPRRKEM 186
           ++ +L+   +  +
Sbjct: 181 LRKLLEEIEKLVL 193

Length = 219

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  127 bits (322), Expect = 2e-37
 Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 28/179 (15%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  DY PT+ D++   + +DG +  L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF---------APNVPIVLVGT 118
           S +R    R  + F+L +S+  R S+E        E+++F           +VPIVLVG 
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFE--------EIKKFREQILRVKDRDDVPIVLVGN 113

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           K DL  +R          V++T +G+EL +Q G   ++E S+K + NV   F   ++ +
Sbjct: 114 KCDLESER----------VVSTEEGKELARQWG-CPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  125 bits (316), Expect = 1e-36
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 28/172 (16%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  +Y PT+ D++   + +DG +  L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF---------APNVPIVLVGT 118
           S +R    R  + F+L +S+  R S+E        E+ +F           +VPIVLVG 
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFE--------EIAKFREQILRVKDRDDVPIVLVGN 115

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           K DL  +R          V++T +G+EL +Q G   ++E S+K + NV   F
Sbjct: 116 KCDLENER----------VVSTEEGKELARQWG-CPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  127 bits (319), Expect = 2e-36
 Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 24/217 (11%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
             +RPL Y  +D  +L F +     +++ LKKW  E+  + P+  I+L+G K DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAI---------- 174
            L +  +     I+  QG  + KQ+GA AY+ECS+ T ++++ ++F TA           
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Query: 175 ----------KVVLQPPRRKEMMARK-KRHRRSSCSI 200
                     K +L  P R E+++   K+ +  SCS+
Sbjct: 195 AKKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSV 231

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  120 bits (303), Expect = 9e-35
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 14/167 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  NKF   +  T   +F    V + G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YR AD  +L + +    S++ V KKW+ EL++    N+ +V+VG K+DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
            R          V++ ++ EE  K +G A + E S+KT + ++ +F 
Sbjct: 120 QR----------VVSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFL 155

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  114 bits (288), Expect = 1e-32
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDR 126
           S +R    R  + F+  F++ SR S+E++        R + + +VP+VLVG K DL    
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA--- 119

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
                   +  ++T QG++L K  G   YIE S+KT+Q V+  F T ++
Sbjct: 120 --------ARTVSTRQGQDLAKSYG-IPYIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  114 bits (287), Expect = 2e-32
 Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 16/170 (9%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
           IK V VGD  VGK+ +L     NK   T+Y P    N+ +  +  DG      L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAP-NVPIVLVGTKLDL 122
           EDY  +R L YR  +  +  F ++      E +L+K   E+   A   VPI+LVG K+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           R+ +  L  HV            L  ++     I  S++T +N+ + F  
Sbjct: 122 RDAK--LKTHVAF----------LFAKLNGEPIIPLSAETGKNIDSAFKI 159

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  112 bits (282), Expect = 1e-31
 Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 20/178 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ ++ + F   +I T+  +F    + +DG  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R R ++   YRGA   +L + +    S+EN+ K WM  +   A  +V  +LVG K D
Sbjct: 64  ---RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCD 119

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           + E R          V++  +GE L ++ G   ++E S+K   NV+  F T  K +L+
Sbjct: 120 MEEKR----------VVSKEEGEALAREYG-IKFLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  110 bits (278), Expect = 5e-31
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + VD   V L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 67  YSRLRPLSY-RGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
           +  L P SY R + + V+ + + +R S++N   KW+ ++R    N V IVLVG K DL +
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
            R           ++T +GE+  K+   A +IE S+K   NVK +F 
Sbjct: 120 KR----------QVSTEEGEKKAKENN-AMFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  110 bits (277), Expect = 8e-31
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 16/168 (9%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
           +K + +GD  VGK+ +L+ +T + F  D   T+  +F    V VDG  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLR 123
            +  L    YRGA   +L + +  R +++N L  W+ EL  ++  P+   +LVG K+D +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDN-LDTWLNELDTYSTNPDAVKMLVGNKID-K 118

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
           E+R           +T  +G++  ++     +IE S+KT+  V+  F+
Sbjct: 119 ENR----------EVTREEGQKFARKHN-MLFIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  110 bits (277), Expect = 8e-31
 Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 14/167 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  V L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRED 125
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL + 
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           +          V+   + +E   ++G   ++E S+K   NV+  F T
Sbjct: 123 K----------VVDYTEAKEFADELG-IPFLETSAKNATNVEEAFMT 158

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  107 bits (269), Expect = 1e-29
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65
             K V VG G VGK+ + I +  + F TDY PT+ D+++    +DG    L + DTAGQE
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQE 61

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
           ++S +R    R  + F+L FS+  R S+E V K     LR +     P++LVG K DL  
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            R           ++  +G+EL +Q+    YIE S+K + NV   F   ++V+
Sbjct: 122 QR----------QVSREEGQELARQL-KIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  106 bits (266), Expect = 4e-29
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 18/167 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGSIVNLGLWDTAGQ 64
           K V +GD +VGK+ +++ +  N+F  +   T+   F   +  V +D + V   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  L P+ YRGA   ++ + + S  S+E   K W+ EL+    PN+ I L G K DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
             R           ++T + +E   + G   ++E S+KT +NV  +F
Sbjct: 120 SKR----------QVSTEEAQEYADENG-LLFMETSAKTGENVNELF 155

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  105 bits (265), Expect = 5e-29
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAVDGSIVNLGLWDTAG 63
           IK + VG+G VGK+ M+  +    F  DY  T+  +F      +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123
           QE++  +    YRGA   +L FS   R S+E + + W  ++     ++P+VLV TK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLL 119

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
           +            VIT  + E L K++    +   S K   NV  +F+
Sbjct: 120 DQ----------AVITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  104 bits (261), Expect = 3e-28
 Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 20/201 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +GDG VGKT + I    N F   Y PT+ D++   V VDG    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF----APNVPIVLVGTKLDLR 123
           + LR    R  + F+L +S+ SR+++E V +++  +++R     A +VPI++VG K    
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNK---- 115

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR- 182
                  D V    ++T +G  L +++G   +IE S+KT  NV+  F T ++ + Q  + 
Sbjct: 116 ------CDKVYEREVSTEEGAALARRLG-CEFIEASAKTNVNVERAFYTLVRALRQQRQG 168

Query: 183 ---RKEMMARKKRHRRSSCSI 200
               K    +KK  ++  C I
Sbjct: 169 GQGPKGGPTKKKEKKKRKCVI 189

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  104 bits (261), Expect = 3e-28
 Identities = 73/194 (37%), Positives = 97/194 (50%), Gaps = 28/194 (14%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVF--DNF--------SANVAVD 50
           IKCV VGD AVGKT ++     NK  T Y       PTV+  D +         +   VD
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 51  GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN 110
           G  V+L LWDT G  D+ + R  +Y  +D+ +L FS+ S  S  NV   W PE+R F P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 111 VPIVLVGTKLDLR---------EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161
           VP++LVG KLDLR           R        ++++    G  + K++G   Y E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-IPYYETSVV 179

Query: 162 TQQNVKAVFDTAIK 175
           TQ  VK VFD AI+
Sbjct: 180 TQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  103 bits (260), Expect = 3e-28
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGKT ++  Y + KF   Y  T+  D  +  V VD  +V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLD 121
           +  L    YRGAD  VL + + +  S+E+ L  W  E    A      N P V++G K+D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFES-LDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           L E R           ++T + ++  K  G   Y E S+K   NV   F+T  ++ L+
Sbjct: 121 LEEKR----------QVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  103 bits (258), Expect = 6e-28
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N+F  D   T+   F+   + +DG  +   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y  +    YRGA   +L + +  ++++ENV ++W+ ELR  A  N+ I+LVG K DLR  
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R           + T + +   ++ G  ++IE S+    NV+  F   + 
Sbjct: 124 R----------AVPTEEAKAFAEKNG-LSFIETSALDGTNVEEAFKQLLT 162

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  103 bits (258), Expect = 6e-28
 Identities = 64/186 (34%), Positives = 90/186 (48%), Gaps = 25/186 (13%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----------SANVAVDGSIVN 55
           IK + +GD  VGKT  L  YT NKF   +I TV  +F               +     V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 56  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPI 113
           L LWDTAGQE +  L    +R A  F+L F L S  S+ NV + WM +L+  A   N  I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 114 VLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 173
           VL+G K DL + R           ++  Q  EL  + G   Y E S+ T QNV+   +T 
Sbjct: 124 VLIGNKADLPDQR----------EVSERQARELADKYG-IPYFETSAATGQNVEKAVETL 172

Query: 174 IKVVLQ 179
           + ++++
Sbjct: 173 LDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  103 bits (258), Expect = 1e-27
 Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 15/200 (7%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
           AS   K V VG G VGK+ + I +  N F  +Y PT+ D++     +D     L + DTA
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTA 61

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN--VPIVLVGTKL 120
           GQE+YS +R    R    F+  +S+ SR+S+E +   +  ++ R      VP++LVG K 
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKC 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DL  +R           ++T +G+EL K  G   ++E S+K + NV   F   ++ + + 
Sbjct: 121 DLDSERQ----------VSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYELVREI-RK 168

Query: 181 PRRKEMMARKKRHRRSSCSI 200
             +++M ++K++ +   C I
Sbjct: 169 YLKEDMPSQKQKKKGGLCLI 188

Length = 189

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  102 bits (257), Expect = 1e-27
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + + +    F   Y PT+ + FS  +   G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 68  SRLRPLSYR-GADIFVLAFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLRED 125
           S L P  Y  G   ++L +S+ SR S+E V   +   L      +VPIVLVG K DL  +
Sbjct: 63  SIL-PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R           ++  +G++L +  G AA++E S+K  +NV+  F+  I+
Sbjct: 122 R----------QVSAEEGKKLAESWG-AAFLESSAKENENVEEAFELLIE 160

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  101 bits (252), Expect = 4e-27
 Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 21/177 (11%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +  N F   Y PT+ D++   V +DG   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR------RFAPNVPIVLVGTKLD 121
           + +R L  +    F+L +S+ S AS   +      ELR      + + NVP+VLVG K D
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG-----ELREQVLRIKDSDNVPMVLVGNKAD 117

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           L +DR           ++   G  L +Q G   + E S++ + NV  VF   ++ ++
Sbjct: 118 LEDDR----------QVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  101 bits (252), Expect = 5e-27
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +NKF T    T+   F + ++ VDG  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
           GQE +  LR   YRG+D  +L FS+    S++N L  W  E   +A      + P V++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 121

Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K+D+ E +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 122 NKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 97.9 bits (244), Expect = 7e-26
 Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T  +F   +  T+   F A  + +DG  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   +L + +  R ++ + L  W+ + R+ +  N+ I+L+G K DL   
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R           ++  +GE   ++ G   ++E S+KT  NV+  F    K +  
Sbjct: 125 R----------EVSYEEGEAFAREHG-LIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 97.1 bits (242), Expect = 1e-25
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGKTC++  + S  F      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLRED 125
           +  +    YR A+  ++A+ +  R+S+E+V   W+ E+ ++ A NV ++L+G K DL E 
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R           +   +   L +  G  A +E S+K   NV+  F
Sbjct: 124 RE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 98.1 bits (244), Expect = 2e-25
 Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 15/179 (8%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLW 59
           MS +   K + +GD  VGK+C+L+ +T  +F   +  T+   F A  + +D   + L +W
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 60  DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGT 118
           DTAGQE +  +    YRGA   +L + +  R ++ N L  W+ + R+ A  N+ I+L+G 
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGN 119

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKV 176
           K DL   R           ++T +GE+  K+ G   ++E S+KT QNV+  F  TA K+
Sbjct: 120 KCDLAHRRA----------VSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 96.0 bits (239), Expect = 3e-25
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDR 126
           + +R L  +    FVL +S+ +++++ ++       LR +   +VP++LVG K DL ++R
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
                     V+   QG+ L +Q G  A++E S+K + NV  +F   ++
Sbjct: 123 ----------VVGKEQGQNLARQWG-CAFLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  NKF  D   T+   F +  V V G  V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   +L + + SR S+ N L  W+ + R  A P++ I+LVG K DL +D
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESF-NALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 126 R--GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           R   +L     S     AQ   L        ++E S+ T +NV+  F    + +
Sbjct: 121 REVTFLE---AS---RFAQENGLL-------FLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 93.4 bits (232), Expect = 3e-24
 Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + S  F   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           + +R L  +    F++ +SL+++ +++++  ++  +  ++ +   VPI+LVG K+DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R           +++A+G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 122 RE----------VSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 93.0 bits (231), Expect = 5e-24
 Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   + VD     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           + +R L  +    F L +S+ ++ S+ ++  L++ +  ++    +VP++LVG K DL ++
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R          V++  +G+ L +Q G   ++E S+K++ NV  +F
Sbjct: 122 R----------VVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 92.9 bits (231), Expect = 6e-24
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 12/164 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDR 126
           + +R   +R  + F+L FS+    S+  + +     LR +   NVP++LVG K DL + R
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
                      ++  +   L +Q G   Y+E S+KT+ NV  VF
Sbjct: 122 Q----------VSVEEAANLAEQWG-VNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 92.7 bits (231), Expect = 7e-24
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 23/169 (13%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----FDNFSANVAVDGSIVNLGLWDT 61
            K V VGDG  GKT  +  + + +F   Y+ T+       +F  N       +   +WDT
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK----IRFNVWDT 56

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQE +  LR   Y      ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVD 115

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +++ +      V    IT  +    +K +    Y E S+K+  N +  F
Sbjct: 116 IKDRK------VKPKQITFHR----KKNLQ---YYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 92.2 bits (229), Expect = 2e-23
 Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 16/170 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    +I TV   F+  V  VDG  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
            +  +    YR A   +L + + +++S++N+ + W+ E+  +A  +V I+L+G K D+  
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           +R          V+    GE L K+ G   ++E S+KT  NV+  F TA+
Sbjct: 121 ER----------VVKREDGERLAKEYG-VPFMETSAKTGLNVELAF-TAV 158

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 92.8 bits (230), Expect = 2e-23
 Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 16/190 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+ + S+    D  PT+  +F    + V G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLRE 124
           +  L    YR A   +L + +  R ++ N+   W  E+  ++ N   V  LVG K+D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT-AIKVVLQPPRR 183
           +R           ++  +G  L K+ G   ++ECS+KT++NV+  F+  A+K++  P   
Sbjct: 135 ERD----------VSREEGMALAKEHG-CLFLECSAKTRENVEQCFEELALKIMEVPSLL 183

Query: 184 KEMMARKKRH 193
           +E     KR+
Sbjct: 184 EEGSTAVKRN 193

Length = 211

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 91.4 bits (227), Expect = 7e-23
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 10  VTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAV-DGSIVNLGLWDTAGQEDY 67
           + +GD  VGK+ +L  +T  +F     PTV  D FS  + +  G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR-FAPNVPI-VLVGTKLDLRED 125
             +    YR +   +L F + +R S+E+V   W+ E R    P+ P+ +LVG K DL   
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R           +T  + E+L K +G   YIE S++T  NV+  F
Sbjct: 125 RQ----------VTREEAEKLAKDLG-MKYIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 89.7 bits (222), Expect = 9e-23
 Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 14/170 (8%)

Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRL 70
           +GD  VGKTC+L  +T N+F + +I T+  +F    + VDG  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 71  RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLREDRGYL 129
               YR A    L + + S  SY++++ KW+ ++  +AP  V  +L+G K D  + R   
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKR--- 121

Query: 130 ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
              VG       QG +L K+ G   + E S+ T +N+K  F    ++VLQ
Sbjct: 122 --QVGDE-----QGNKLAKEYG-MDFFETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 90.3 bits (224), Expect = 1e-22
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQ 64
           +K V +G  +VGKT ++  Y  ++F    Y  T+   F A  + V   +V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
           E Y  +  + YRGA   ++ + L   +S+E   K W+ EL+    +  I L GTK DL E
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
               L      +V   A  +E++ Q       E SSKT QNV  +F  
Sbjct: 120 QDRSLRQVDFHDVQDFA--DEIKAQH-----FETSSKTGQNVDELFQK 160

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 89.6 bits (222), Expect = 1e-22
 Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  + F + ++ TV  +F    V  +   + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y  +    YRGA  F+L + + +  S+ N ++ W  +++ ++  N  ++LVG K D+ ++
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           R          V++  +G +L  Q+G   + E S+K   NVK VF+  + ++
Sbjct: 122 R----------VVSAERGRQLADQLG-FEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 89.5 bits (222), Expect = 2e-22
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 18/183 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + S+ FP  + PT+ D +     +D     L + DTAGQ ++
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEF 63

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           + +R    R  + F++ +S+  R S++     K+ +  +R    ++P+VLVG K+DL + 
Sbjct: 64  TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDLEQQ 122

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           +TT +G  L ++     + E S+  +  +   F   ++ +    RRKE
Sbjct: 123 RQ----------VTTEEGRNLAREFN-CPFFETSAALRFYIDDAFHGLVREI----RRKE 167

Query: 186 MMA 188
            M 
Sbjct: 168 SMP 170

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 19/173 (10%)

Query: 10  VTVGDGAVGKTCML--ICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           V VG G VGK+ +L  +        +D   T  D       +D   V L L DT G +++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 68  SRLRP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
             L       L  RGAD+ +L      R S E+     +  LR+    +PI+LVG K+DL
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK--EGIPIILVGNKIDL 118

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
            E+R           +      E   +I      E S+KT + V  +F+  I+
Sbjct: 119 LEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T  KF  D   T+   F    + V+G  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   ++ + +  R++Y N L  W+ + R    PN  I L+G K DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R           +T  + ++   + G   ++ECS+KT +NV+  F    K + Q
Sbjct: 123 RD----------VTYEEAKQFADENG-LLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 84.8 bits (210), Expect = 2e-20
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----FDNFSANVAVDGSIVNLGLWDT 61
            K V VGDG  GKT  +  + + +F   Y PT+       +F  N    G I     WDT
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIR-FYCWDT 69

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQE +  LR   Y      ++ F + +R +Y+NV   W  +L R   N+PIVL G K+D
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128

Query: 122 LREDRGYLADHV 133
           ++ +R   A  V
Sbjct: 129 VK-NRQVKAKQV 139

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 11/125 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-----VDGSIVNLGLWDT 61
            K + VGDG VGKT  +  + + +F   YIPT+       V       +   +   +WDT
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL----GVEVHPLKFYTNCGPICFNVWDT 65

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQE +  LR   Y      ++ F + SR +Y+NV   W  ++ R   N+PIVLVG K+D
Sbjct: 66  AGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVD 124

Query: 122 LREDR 126
           ++ DR
Sbjct: 125 VK-DR 128

Length = 215

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 20/179 (11%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED- 66
           K   +G   VGK+ + + + + +F  +Y P +   +S  V +DG  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 67  ---YSRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLD 121
               S  R L  R AD FVL +S+  R+S++ V  L + + E+++    +P++LVG K D
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS-SKTQQNVKAVFDTAIKVVLQ 179
           L   R           ++T +G++L  ++G   + E S ++    V+ VF    + V +
Sbjct: 119 LLHSR----------QVSTEEGQKLALELGCLFF-EVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 83.0 bits (205), Expect = 3e-20
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 1   MSASKFI-KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGL 58
           M    F+ K V +G+  VGKTC++  +T   FP     T+  +F    V + G  + L +
Sbjct: 1   MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQI 60

Query: 59  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVG 117
           WDTAGQE +  +    YR A+  +L + +    S+   L +W+ E+ ++A N V  +LVG
Sbjct: 61  WDTAGQERFRSITQSYYRSANALILTYDITCEESFR-CLPEWLREIEQYANNKVITILVG 119

Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            K+DL E R           ++  + EE         Y+E S+K   NV+ +F
Sbjct: 120 NKIDLAERRE----------VSQQRAEEFSDA-QDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 81.1 bits (200), Expect = 5e-19
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N+F  +   T+   F+   + V+G  V   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y  +    YRGA   +L + +  R +++NV  +W+ ELR  A  N+ I++ G K DL   
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R  +A+  G      A+ E L       +++E S+    NV+  F T +  +     +K 
Sbjct: 133 RS-VAEEDGQ---ALAEKEGL-------SFLETSALEATNVEKAFQTILLEIYHIISKKA 181

Query: 186 MMARK 190
           + A++
Sbjct: 182 LAAQE 186

Length = 216

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 80.7 bits (199), Expect = 6e-19
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 13/190 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+ +  N F   YI T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  +    YRG    ++ + + +  S+ NV K+W+ E+ +   +V  VLVG K D  E +
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERK 126

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM 186
                     V+ T    +   Q+G  +  E S+K   NV+ +F+   ++VL+  +    
Sbjct: 127 ----------VVETEDAYKFAGQMG-ISLFETSAKENINVEEMFNCITELVLRAKKDNLA 175

Query: 187 MARKKRHRRS 196
             ++++    
Sbjct: 176 KQQQQQQNDV 185

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           ++ V +GD  VGK+ +++   S +FP + +P V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
                    R A++  L +S+   ++ E +  KW+P +RR    VPI+LVG K DLR+  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 121

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAA-----AYIECSSKTQQNVKAVFDTAIKVVLQP 180
                       + A  EE    I          +ECS+KT  NV  VF  A K VL P
Sbjct: 122 ------------SQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 77.6 bits (191), Expect = 3e-18
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-VFDNFSANVAVDGSIVNLGLWDTAGQE 65
           +K + +GD AVGK+ ++  +  + +    + T     +  N   +G  + +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
            +  +    Y  A   +L F +  + +Y+N L KW  ELR + P +P ++V  K+DL
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKN-LSKWYEELREYRPEIPCIVVANKIDL 116

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQED 66
           K + VGD +VGKTC++  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPE-LRRFAP-NVPIVLVGTKLDLRE 124
           +  +    YRGA   ++ F L   AS E+  ++W+ + L+   P +V + LVGTK DL  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
              Y         +      +L +++  A Y   S+ T +NV+  F
Sbjct: 121 PAQY--------ALMEQDAIKLAREM-KAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 75.8 bits (186), Expect = 4e-17
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 10  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYS 68
           + +G   VGKT ++  +T + F      TV  +F    V + G  + L +WDTAGQE ++
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 69  RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRG 127
            +    YR A   +L + +  + ++++ L KWM  + ++A  +  ++LVG KLD   DR 
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Query: 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-----DTAIKVVLQPPR 182
                     IT  QGE+  +QI    + E S+K   NV  +F     D   K+ L   R
Sbjct: 123 ----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILR 172

Query: 183 RK 184
            +
Sbjct: 173 NE 174

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGKTC+   + + +FP     T+  +F    V +DG  + + LWDTAGQE 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 67  YSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLR 123
           + + +    YR     V  + + + AS+ + L  W+ E  + +    VP +LVG K DLR
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHS-LPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 124 E 124
           E
Sbjct: 123 E 123

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV--DGSIVNLGLWDTAGQE 65
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V      ++V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR---RFAPN--VPIVLVGTKL 120
            +  +  + Y+GA   ++ F +   +++E VL KW  +L           +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV 166
           DL+++R               Q ++  K+ G   + E S+K   N+
Sbjct: 121 DLKKERLAKDPE---------QMDQFCKENGFIGWFETSAKENINI 157

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAVDGSIVNLGLWDTAGQ 64
           K V +GD   GK+ +L      +FP + +    D     +  V  D  ++N+  WD  G+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNI--WDFGGR 58

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKL 120
           E+      +  + AD  +L + L  R S   V  L  W+P LR+    +P++LVG KL
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           IK +++G+  VGK+C++  Y   +F + Y+PT+  D     V+V    V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF------APNVPIVLVGTK 119
           +Y  +R   Y+     +L + +  R S+E  L  W+ E+++         N+ +V+   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           +DL + R           ++  +G    +  G   Y E S+ T + V  +F T
Sbjct: 120 IDLTKHR----------AVSEDEGRLWAESKG-FKYFETSACTGEGVNEMFQT 161

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 73.2 bits (180), Expect = 7e-16
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 24/197 (12%)

Query: 10  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR 69
           V +G   VGKT ++  +   +F   Y PT+ D      ++ G +  L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 70  LRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELR-------RFAPNVPIVLVGTKL 120
           +R LS    D+F+L FSL +R S+E V  L++ + E +       +    +P+V+ G K 
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           D    R    D V          E+L       AY E S+K   N+  +F     +   P
Sbjct: 124 DRDFPREVQRDEV----------EQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP 173

Query: 181 PRRKEMMARKKRHRRSS 197
               EM      HR+ S
Sbjct: 174 ---NEM--SPSLHRKIS 185

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 71.0 bits (174), Expect = 1e-15
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           + V  G G VGK+ +++ +    F   YIPT+ D +   ++   SI  L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF----APNVPIVLVGTKLDLR 123
             ++ LS      F+L +S+ S+ S E  LK     +          +PI+LVG K D  
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEE-LKPIYELICEIKGNNLEKIPIMLVGNKCDES 121

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
             R           +++++G  L +     A++E S+KT  NV+ +F
Sbjct: 122 PSRE----------VSSSEGAALART-WNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 15/160 (9%)

Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRL 70
           VGDG  GKT  +  + + +F   Y+ T+  +        +   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 71  RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA 130
           R   Y      ++ F + +R +Y+NV   W  +L R   N+PIVL G K+D+++ +    
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK---- 115

Query: 131 DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
             V +  IT  + + L+       Y + S+K+  N +  F
Sbjct: 116 --VKAKSITFHRKKNLQ-------YYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 8   KCVTVGDGAVGKT--CMLICYTSNKFPTDYIPTVFDNF---SANVAVDGSIVNLGLWDTA 62
           +C  VGD AVGK+    +       F  +Y  T   +    +  V      V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLVGTKL 120
           GQE +S +    +    +  + + + +  S+ N   +W+  +R  +  +  P VLVG K 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
           DL               +  AQ + L  Q     + E S+K     +A F 
Sbjct: 121 DL----------TDRREVDAAQAQAL-AQANTLKFYETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
           +K   +GD  +GKT +++ Y   +F  +YI T+  NF    +++ G+ +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           ++  + PL  + A   +  F L  +++  ++ K+W  + R F      +LVGTK DL  D
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTKYDLFAD 119

Query: 126 RGYLADHVGSNVITTAQGEELRK--QIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
              L       +   A     RK  +   A  I CS+    NV+ +F    K VL
Sbjct: 120 ---LPPEEQEEITKQA-----RKYAKAMKAPLIFCSTSHSINVQKIF----KFVL 162

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 28/198 (14%)

Query: 8   KCVTVGDGAVGKTCM-LICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           + V +GD  VGK+ +  I        + Y  +  D +   V+VDG    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR------RFAPNVPIVLVGTKL 120
              L     +  D +V+ +S+  R+S+E        ELR      R A ++PI+LVG K 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKA-----SELRIQLRRARQAEDIPIILVGNKS 116

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DL          V S  ++  +G           +IE S+  Q NV  +F+  ++ V   
Sbjct: 117 DL----------VRSREVSVQEGRACAVVF-DCKFIETSAALQHNVDELFEGIVRQVRLR 165

Query: 181 PRRKE-----MMARKKRH 193
              KE     M +RK+R 
Sbjct: 166 RDSKEKNTRRMASRKRRE 183

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 25/208 (12%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           + V +G   VGKT ++  +  + F   +  TV +  S    V G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
             +R LS +  D F L +S+    S+E V  L++ + E++     VPIV+VG K+D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKIDSLAE 119

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV-----LQP 180
           R   A    S V       EL    G   ++E S+K  +NV  VF   ++       L P
Sbjct: 120 RQVEAADALSTV-------ELDWNNG---FVEASAKDNENVTEVFKELLQQANLPSWLSP 169

Query: 181 P--RRKEMMA-----RKKRHRRSSCSIA 201
              RR+E        R   ++ +SCS++
Sbjct: 170 ALRRRRESAPSEIQRRPPMNKTNSCSVS 197

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 20/174 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGSIVNLGLWDTAG 63
            K + VG G VGKT +       KF  D   T      ++    A +   + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123
           QE Y            +++L F L       + +  W+ +++ F    P++LVGT +D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDL-RTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDES 119

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAA--AYIECSSKTQQNVKAVFDTAIK 175
            D   L              + L K+  A        S K  + +  +     K
Sbjct: 120 CDEDILK-------------KALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 64.8 bits (158), Expect = 6e-13
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 24/215 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSI-VNLGLWDTAGQ 64
           IK V +GDGA GKT ++  +    F   Y  T+  D FS  + + GS+ V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN----VPIVLVGTKL 120
           +   ++      GA    L + + +  S+EN L+ W+  +++          +VLVG K 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFEN-LEDWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 121 DLREDRGYLADH---------VGSNVITTAQGEE---LRKQIGAAAYIECSSKTQQNVKA 168
           DL  +R   A+          + S  ++   G+      ++I  AA +     +Q  ++ 
Sbjct: 120 DLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRI--AAELLGVKLSQAELEQ 177

Query: 169 VFDTAIKVVLQPPRR--KEMMARKKRHRRSS-CSI 200
                   V +   R  +E ++R    R +S C++
Sbjct: 178 SQRVVKADVSRYSERTLREPVSRSVNKRSNSMCAV 212

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 24/202 (11%)

Query: 6   FIKCVTVGDGAVGKTCMLICYT--SNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
            +K + VGD  VGK  +L      S + P  Y   + D  +  + +DG  V L LWDT+G
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGI-DYKTTTILLDGRRVKLQLWDTSG 64

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123
           Q  +  +     RGA   +L + + +R S++ +  +W+ E+   AP VP +LVG +L L 
Sbjct: 65  QGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLA 123

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL----Q 179
             R           + T Q +   ++ G   + E S     N+   F    ++VL    +
Sbjct: 124 FKRQ----------VATEQAQAYAERNG-MTFFEVSPLCNFNITESFTELARIVLMRHGR 172

Query: 180 PPRRKEMMARKKRHRRSSCSIA 201
           PP+        +   R+SC I+
Sbjct: 173 PPQSP-----PQNCSRNSCKIS 189

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 32/197 (16%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +K V +GD  VGKT +L  Y   +F  D + TV   F           N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLK---QWGPYNISIWDTAGREQ 56

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  L  +  RGA   +L + + +  S E +  +++        +    +VG KLDL E+ 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 127 GYLADHVGSNVITTAQGEELRKQI----GAAAY---------------------IECSSK 161
                   +         E ++Q+      A Y                      E S+K
Sbjct: 117 ALAGQEKDAGDRV---SPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAK 173

Query: 162 TQQNVKAVFDTAIKVVL 178
           T  NV  +F+    +VL
Sbjct: 174 TGYNVDELFEYLFNLVL 190

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 58.6 bits (141), Expect = 6e-11
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 29  NKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL 87
           + F  +Y  T+  D  S  + +D   V L LWDTAGQE +  L P   R +   ++ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 88  ISRASYENVLKKWMPE-LRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL 146
            +R S+EN   KW+ + L     +V I LVG K DL + R           +T  +G + 
Sbjct: 63  TNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGDLRK----------VTYEEGMQ- 110

Query: 147 RKQIGAAAYIECSSKTQQNVKAVF 170
           + Q     + E S+K   N+K +F
Sbjct: 111 KAQEYNTMFHETSAKAGHNIKVLF 134

Length = 176

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 25/203 (12%)

Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWD---------T 61
           +G   VGKT ++  + + +FP +YIPT     +   V + G + +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRF-APNVPIVLVGT 118
           AGQE +   R    R +  F+L + + S  S+  V  L++ + E R       PIV+VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           K D +  R +   HV S ++         ++     Y+ECS+K   ++  +F   +    
Sbjct: 125 KRDQQRHR-FAPRHVLSVLV---------RKSWKCGYLECSAKYNWHILLLFKELLISAT 174

Query: 179 QPPRRKEMMAR-KKRHRRSSCSI 200
              R      R +    R  CSI
Sbjct: 175 TRGRSTHPALRLQGALHRERCSI 197

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 30/174 (17%)

Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR 71
           VG    GKT ++    S +F  D IPTV  N      V    V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMR---KVTKGNVTIKVWDLGGQP---RFR 58

Query: 72  PL--SY-RGADIFVLAFSLISRASYE---NVLKKWM--PELRRFAPNVPIVLVGTKLDLR 123
            +   Y RG +  V       R   E   N L   +  P L      +P++++G K DL 
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLE----GIPLLVLGNKNDLP 114

Query: 124 E--DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
                  L + +    IT        +++   +    S+K + N+  V D  IK
Sbjct: 115 GALSVDELIEQMNLKSIT-------DREV---SCYSISAKEKTNIDIVLDWLIK 158

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR 71
           VG+   GK+ ++  Y +  +     P     F   V VDG    L + D  G  D    +
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD---AQ 61

Query: 72  PLSYRGADIFVLAFSLISRASYENVLKKW--MPELRRFAPNVPIVLVGTKLDLREDRGYL 129
              +  A IFV  FSL   AS++ V + +  +   R  +  +P++LVGT+          
Sbjct: 62  FAGWVDAVIFV--FSLEDEASFQTVYRLYHQLSSYRNIS-EIPLILVGTQ---------- 108

Query: 130 ADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKV 176
            D + ++   VI  A+  +L   +   +Y E  +    NV+ VF + A K+
Sbjct: 109 -DAISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 37.3 bits (88), Expect = 0.003
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 108 APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVK 167
               P++LV  K+DL +D+  L   +          EEL + +  A  +  S+    NV 
Sbjct: 111 KVKTPVILVLNKIDLVKDKEELLPLL----------EELSELMDFAEIVPISALKGDNVD 160

Query: 168 AVFDTAIK 175
            + D   K
Sbjct: 161 ELLDVIAK 168

Length = 292

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 2   SASKFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
             +K ++ + +G D A GKT +L      +  T  IPT+  N    V      V   +WD
Sbjct: 10  GWNKEMRILILGLDNA-GKTTILYKLKLGEIVT-TIPTIGFN-VETVTYKN--VKFTVWD 64

Query: 61  TAGQEDYSRLRPL---SYRGAD--IFVLAFSLISR-ASYENVLKKWM--PELRRFAPNVP 112
             GQE    LRPL    +   D  IFV+  +   R    +  L   +   EL     + P
Sbjct: 65  VGGQE---SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELA----DAP 117

Query: 113 IVLVGTKLDLRED 125
           ++++  K DL   
Sbjct: 118 LLILANKQDLPGA 130

Pfam combines a number of different Prosite families together. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
KOG0395	196	consensus Ras-related GTPase [General function pre	99.98
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
PTZ00099	176	rab6; Provisional	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
KOG1673	205	consensus Ras GTPases [General function prediction	99.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
PRK11058	426	GTPase HflX; Provisional	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.86
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.85
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.84
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
PRK12298	390	obgE GTPase CgtA; Reviewed	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
PRK10218	607	GTP-binding protein; Provisional	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.78
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.78
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.77
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.77
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.77
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.76
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
PRK12736	394	elongation factor Tu; Reviewed	99.75
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
PRK12735	396	elongation factor Tu; Reviewed	99.73
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.72
CHL00071	409	tufA elongation factor Tu	99.71
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.69
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
COG2262	411	HflX GTPases [General function prediction only]	99.68
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.67
PRK00049	396	elongation factor Tu; Reviewed	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
COG1084	346	Predicted GTPase [General function prediction only	99.66
PLN03127	447	Elongation factor Tu; Provisional	99.66
PLN00043	447	elongation factor 1-alpha; Provisional	99.66
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.66
COG1163	365	DRG Predicted GTPase [General function prediction	99.65
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.65
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.64
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
COG3596	296	Predicted GTPase [General function prediction only	99.63
PTZ00141	446	elongation factor 1- alpha; Provisional	99.63
COG0218	200	Predicted GTPase [General function prediction only	99.62
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.62
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.62
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.61
COG0536	369	Obg Predicted GTPase [General function prediction	99.6
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.58
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.58
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
KOG1145	683	consensus Mitochondrial translation initiation fac	99.58
KOG0090	238	consensus Signal recognition particle receptor, be	99.57
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.57
PRK12739	691	elongation factor G; Reviewed	99.57
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.56
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.56
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.55
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.54
PRK09602	396	translation-associated GTPase; Reviewed	99.52
PRK09866	741	hypothetical protein; Provisional	99.52
PRK12740	668	elongation factor G; Reviewed	99.51
PRK00007	693	elongation factor G; Reviewed	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.47
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.46
PRK14845	1049	translation initiation factor IF-2; Provisional	99.46
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.44
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.44
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.44
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.43
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.42
PRK13768	253	GTPase; Provisional	99.41
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.41
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.4
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.4
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.4
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.38
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.38
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.37
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.37
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.33
PRK07560	731	elongation factor EF-2; Reviewed	99.33
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.32
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.32
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.31
PTZ00258	390	GTP-binding protein; Provisional	99.31
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.31
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.31
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.31
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.31
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.3
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.29
PTZ00416	836	elongation factor 2; Provisional	99.28
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.26
PRK09601	364	GTP-binding protein YchF; Reviewed	99.23
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.23
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.21
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.18
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.15
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.14
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.14
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.12
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.11
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.1
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.09
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.08
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.03
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.02
PRK00098	298	GTPase RsgA; Reviewed	99.01
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.01
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.98
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.97
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.97
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.94
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.94
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.94
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.87
KOG1143	591	consensus Predicted translation elongation factor	98.87
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.85
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
PRK12288	347	GTPase RsgA; Reviewed	98.81
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.8
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.8
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.79
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.78
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.77
KOG0410	410	consensus Predicted GTP binding protein [General f	98.77
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.76
KOG0460	449	consensus Mitochondrial translation elongation fac	98.74
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.69
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.67
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.62
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.62
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.57
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.57
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.54
KOG2486	320	consensus Predicted GTPase [General function predi	98.54
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.53
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.53
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.53
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.52
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.5
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.48
COG1161	322	Predicted GTPases [General function prediction onl	98.46
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.44
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.42
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.41
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.41
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.37
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.37
PRK13796	365	GTPase YqeH; Provisional	98.35
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.35
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.32
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.27
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.25
PRK12288	347	GTPase RsgA; Reviewed	98.23
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.19
PRK01889	356	GTPase RsgA; Reviewed	98.19
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.19
cd03112	158	CobW_like The function of this protein family is u	98.19
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.17
PRK12289	352	GTPase RsgA; Reviewed	98.11
PRK10416	318	signal recognition particle-docking protein FtsY;	98.07
PRK14974	336	cell division protein FtsY; Provisional	98.06
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.06
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.06
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.05
COG1162	301	Predicted GTPases [General function prediction onl	98.05
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.02
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.0
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.99
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.98
PRK13796	365	GTPase YqeH; Provisional	97.96
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.95
KOG1533	290	consensus Predicted GTPase [General function predi	97.94
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.93
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.9
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.9
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.9
COG1162	301	Predicted GTPases [General function prediction onl	97.89
PRK00098	298	GTPase RsgA; Reviewed	97.88
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.84
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.82
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.78
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.76
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.76
cd03114	148	ArgK-like The function of this protein family is u	97.76
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.76
PRK13695	174	putative NTPase; Provisional	97.73
COG0523	323	Putative GTPases (G3E family) [General function pr	97.72
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.69
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.65
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.61
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.6
COG3523	1188	IcmF Type VI protein secretion system component Va	97.58
KOG2484	435	consensus GTPase [General function prediction only	97.57
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.53
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.53
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.49
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.47
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.44
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.41
PRK08118	167	topology modulation protein; Reviewed	97.4
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.4
PRK10867	433	signal recognition particle protein; Provisional	97.39
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.38
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.37
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.36
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.35
PRK07261	171	topology modulation protein; Provisional	97.31
TIGR00959	428	ffh signal recognition particle protein. This mode	97.28
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.27
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.26
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.24
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.23
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.21
PRK05480	209	uridine/cytidine kinase; Provisional	97.21
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.19
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.17
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.15
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.15
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.09
PTZ00088	229	adenylate kinase 1; Provisional	97.06
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.05
PF00004	132	AAA: ATPase family associated with various cellula	97.05
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.03
PRK14530	215	adenylate kinase; Provisional	97.03
PRK14737	186	gmk guanylate kinase; Provisional	97.02
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.0
PRK06217	183	hypothetical protein; Validated	96.99
PRK14738	206	gmk guanylate kinase; Provisional	96.98
PRK14527	191	adenylate kinase; Provisional	96.97
cd03110	179	Fer4_NifH_child This protein family's function is	96.96
smart00382	148	AAA ATPases associated with a variety of cellular	96.95
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.95
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.93
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.92
PRK03839	180	putative kinase; Provisional	96.91
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.88
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.86
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.85
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.84
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.83
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.83
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.81
PRK14532	188	adenylate kinase; Provisional	96.81
PRK00300	205	gmk guanylate kinase; Provisional	96.81
PRK13949	169	shikimate kinase; Provisional	96.79
PRK01889	356	GTPase RsgA; Reviewed	96.78
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.78
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.77
PRK14531	183	adenylate kinase; Provisional	96.76
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.76
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.75
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.75
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.72
PRK08233	182	hypothetical protein; Provisional	96.71
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.71
PRK02496	184	adk adenylate kinase; Provisional	96.7
PHA00729	226	NTP-binding motif containing protein	96.7
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.69
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.68
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.68
PLN02200	234	adenylate kinase family protein	96.67
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.67
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.65
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.65
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.63
PRK06547	172	hypothetical protein; Provisional	96.62
PRK13851	344	type IV secretion system protein VirB11; Provision	96.6
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.6
PRK05057	172	aroK shikimate kinase I; Reviewed	96.59
PLN02674	244	adenylate kinase	96.59
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.59
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.59
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.58
PRK00625	173	shikimate kinase; Provisional	96.58
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.58
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.55
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.55
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.55
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	96.54
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.54

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-41  Score=237.90  Aligned_cols=170  Identities=35%  Similarity=0.671  Sum_probs=158.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+|+|+.|+|||+|+.||.+..|++.+..|.+..+ .+++.++++.+.++||||+||++|+++...++++||++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            4678999999999999999999999999999999997666 578899999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||+++.+||..+ ..|+.+++.+. +++|.++||||+|+.+.+.          ++.++++.++..++...|+|+||+
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK  155 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK  155 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence            99999999999999 99999999988 6889999999999999876          999999999999999339999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhh
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      ++.||++.|..|...+..+....
T Consensus       156 ~~~NVe~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             CccCHHHHHHHHHHHHHHhcccC
Confidence            99999999999999987654433

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-40  Score=231.60  Aligned_cols=171  Identities=32%  Similarity=0.605  Sum_probs=157.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ....+||+++|+.++|||||+-|+..+.|.+...+|.+ ..+.+++.+++..++|.||||+|+++|.++-++++++|+++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            35679999999999999999999999999998888886 44578899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      |+|||+++.+||..+ +.|+..+.+.. |++-+.+||||+||.+.+.          +..++++.++++.+. .|+|+||
T Consensus        82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSA  149 (200)
T KOG0092|consen   82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSA  149 (200)
T ss_pred             EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEec
Confidence            999999999999999 99999999888 5777889999999998765          999999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhhH
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      +++.||+++|..|.+.+........
T Consensus       150 KTg~Nv~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  150 KTGENVNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             ccccCHHHHHHHHHHhccCcccccc
Confidence            9999999999999999988655544

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.3e-38  Score=233.08  Aligned_cols=176  Identities=59%  Similarity=1.003  Sum_probs=152.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ..+||+++|+.++|||||+.++..+.|++.+.+|.+..+...+.+++..+.+++|||+|+++|+.+++.+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            35899999999999999999999999999999999887777778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||+++++||+.+...|...+....+++|++|||||.|+.+.....  ..+...+.++.+++.++++..+..+|+++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            999999999999446888887766799999999999996543210  111122347788999999999866999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.||+++|+++++.+..+
T Consensus       162 g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCHHHHHHHHHHHHhcc
Confidence            999999999999988663

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5e-38  Score=228.59  Aligned_cols=173  Identities=91%  Similarity=1.391  Sum_probs=152.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++++|||||+.++..+.|...+.+|.+..+...+.+++..+.+++|||+|+++|.+++..+++++|++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                      +++++||+.+...|+..+....+++|++|||||+|+.+++.....+...+.++.+++.++++..+..+|+|+||++|.||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence            99999999985689999987777899999999999965431111112233488999999999998757999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028239          167 KAVFDTAIKVVLQ  179 (211)
Q Consensus       167 ~~lf~~l~~~~~~  179 (211)
                      +++|+.+++.+.+
T Consensus       162 ~~~F~~~~~~~~~  174 (176)
T cd04133         162 KAVFDAAIKVVLQ  174 (176)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998754

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.1e-39  Score=218.70  Aligned_cols=169  Identities=31%  Similarity=0.617  Sum_probs=156.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|++|+|||||+-+|..+.|.+..+.|.+..+ .+.+.+++..+++.||||+|+++|+.+++.+++.+.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            569999999999999999999999999998888787555 5788999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++.+++|..+ ..|.+++.-+.  +++-.++||||+|...++.          ++.+++..|+++++. .|+|+||+
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk  157 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK  157 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence            9999999999999 99999999887  5777789999999876665          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhH
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      +.+||...|++++.+|++.+.-.+
T Consensus       158 t~~~V~~~FeelveKIi~tp~l~~  181 (209)
T KOG0080|consen  158 TRENVQCCFEELVEKIIETPSLWE  181 (209)
T ss_pred             hhccHHHHHHHHHHHHhcCcchhh
Confidence            999999999999999998776555

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.9e-38  Score=230.46  Aligned_cols=176  Identities=39%  Similarity=0.712  Sum_probs=154.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +...+||+++|++++|||||+.++..+.+...+.+|.+..+...+.+++..+.+++|||+|++.|..+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            45679999999999999999999999999999999998888778889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.||+.+...|+..+....++.|++|||||+|+.+.....  ......+.++.+++++++++.++.+|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997679999998887899999999999986421100  0011123589999999999999669999999


Q ss_pred             CCCCC-HHHHHHHHHHHHc
Q 028239          161 KTQQN-VKAVFDTAIKVVL  178 (211)
Q Consensus       161 ~~~~~-v~~lf~~l~~~~~  178 (211)
                      ++|.| |+++|..+++.++
T Consensus       162 k~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         162 LQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            99998 9999999998754

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.2e-38  Score=237.87  Aligned_cols=177  Identities=36%  Similarity=0.649  Sum_probs=154.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ...+||+++|++++|||+|+.+|..+.|...+.+|.+..+...+.+++..+.++||||+|++.|..+++.+++++|++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            35789999999999999999999999999999999988887778889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc--cccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++++|+.+...|+..+....++.|+++||||+|+........  .....+.++.+++++++++.++.+|+||||+
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk  170 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF  170 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence            99999999999854899999988778899999999999864311110  0111245889999999999997579999999


Q ss_pred             CCC-CHHHHHHHHHHHHcCC
Q 028239          162 TQQ-NVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~-~v~~lf~~l~~~~~~~  180 (211)
                      +|. ||+++|..+++.+++.
T Consensus       171 tg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         171 TSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCcCHHHHHHHHHHHHHHh
Confidence            998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=222.58  Aligned_cols=171  Identities=33%  Similarity=0.578  Sum_probs=157.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||.++|++|+|||||++++..++|...+..|.+..+ .+.+.++++.+.+++|||+|+++|+++...+++++|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            5679999999999999999999999999999999997555 688999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      +|||++++.||+.+ ..|.+++....     ..-|+||+|||.|+....        .++++.+.+++|+++.+..||||
T Consensus        87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfE  157 (210)
T KOG0394|consen   87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFE  157 (210)
T ss_pred             EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEE
Confidence            99999999999999 99999998766     257999999999997642        23599999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcCCchh
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~~~~~  183 (211)
                      +||++..||+++|..+.+.++.....
T Consensus       158 tSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  158 TSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             ecccccccHHHHHHHHHHHHHhccch
Confidence            99999999999999999999988764

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-39  Score=224.55  Aligned_cols=175  Identities=30%  Similarity=0.569  Sum_probs=163.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGAD   79 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   79 (211)
                      |+....+|++++|+.|+|||+|+.+|..+.|.+.++.|.+..+ ...+.++++.+++++|||+|+++|++.+..+++.+.
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            7888999999999999999999999999999999999997666 577899999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      ++|+|||++..+||..+ ..|+..+++.. +|..++|+|||+||...+.          |+.+|++.|+++.+. .|+++
T Consensus        81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET  148 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET  148 (216)
T ss_pred             ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence            99999999999999999 99999999886 8999999999999998776          999999999999888 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCCchhhHHH
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQPPRRKEMM  187 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~~~~~~~~  187 (211)
                      ||++++||+++|..+...|+...+.+-..
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~~q~g~~~  177 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRKIQDGVFD  177 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999998866655543

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=6.1e-38  Score=230.51  Aligned_cols=168  Identities=27%  Similarity=0.493  Sum_probs=151.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .+..+||+++|..|+|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999988888877765444 45677889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |+|||++++.+|+.+ ..|++.+....++.|+||||||.|+...+.          ++.++++.+++..+. +|+++||+
T Consensus        83 llVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk  150 (189)
T cd04121          83 ILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPL  150 (189)
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCC
Confidence            999999999999999 899999988778999999999999976554          888999999999987 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +|.||+++|+++++.+..+..
T Consensus       151 ~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         151 CNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999998876444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.3e-37  Score=225.86  Aligned_cols=173  Identities=38%  Similarity=0.706  Sum_probs=150.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||+++|..+.++..+.+|.+..+...+.+++..+.+++|||+|++.|..+++.+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999999999999998888778888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++++||+.+...|+..+.+..++.|+++||||+|+.++....  ......+.++.+++.++++..+..+|+|+||++|
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~  160 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS  160 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence            99999999996579999998888899999999999996421100  0001123488999999999999768999999999


Q ss_pred             CC-HHHHHHHHHHHHc
Q 028239          164 QN-VKAVFDTAIKVVL  178 (211)
Q Consensus       164 ~~-v~~lf~~l~~~~~  178 (211)
                      ++ |+++|..+++..+
T Consensus       161 ~~~v~~~F~~~~~~~~  176 (178)
T cd04131         161 EKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            95 9999999999654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-38  Score=224.51  Aligned_cols=171  Identities=32%  Similarity=0.626  Sum_probs=158.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +.++.+||+++|+++||||+|+.+|..+.|...+..|.+..+ .+++..++..+.+++|||+||++|+.+...+++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            346789999999999999999999999999999999997666 5788999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +++|||+++..||+++ ..|+..+.+.. +++|.++||||+|+...+.          |+.+.+++++..++. +|+|+|
T Consensus        88 i~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtS  155 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETS  155 (207)
T ss_pred             eEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcc
Confidence            9999999999999999 77999999998 5999999999999988665          999999999999998 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      |++|.||+++|..|.+.+..+....
T Consensus       156 Ak~~~NI~eaF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  156 AKTNFNIEEAFLSLARDILQKLEDA  180 (207)
T ss_pred             ccCCCCHHHHHHHHHHHHHhhcchh
Confidence            9999999999999999998754443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-38  Score=220.23  Aligned_cols=166  Identities=35%  Similarity=0.575  Sum_probs=154.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +.+||+++|+.++||||||.||+.+.|...|..|.+..| ..++.+.+.++.|++|||+|||+|+++.+.++++++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            458999999999999999999999999999999997655 6889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-C-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-P-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||+++..||+.. .+|++.+.... . ++-+++||||.||.+.+.          ++.+++...+++++. .|+++||+
T Consensus       101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak  168 (221)
T KOG0094|consen  101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK  168 (221)
T ss_pred             EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence            9999999999999 99999998876 3 467789999999999875          999999999999999 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      .|.||..+|..|..++.....
T Consensus       169 ~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  169 AGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             CCCCHHHHHHHHHHhccCccc
Confidence            999999999998888877654

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.6e-37  Score=231.82  Aligned_cols=175  Identities=38%  Similarity=0.717  Sum_probs=152.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+|+|++|+|||||+.+|..+.|+..+.||....+...+.+++..+.|.||||+|++.|..+++.+++++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999988887788899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc--cccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++++|+.+...|...+....++.|++|||||+|+..+.....  .......++.+++..+++.+++.+|+||||+++.
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            99999999997788888877778999999999999965421111  1111234788999999999997799999999988


Q ss_pred             C-HHHHHHHHHHHHcCCc
Q 028239          165 N-VKAVFDTAIKVVLQPP  181 (211)
Q Consensus       165 ~-v~~lf~~l~~~~~~~~  181 (211)
                      + |+++|...++..+...
T Consensus       162 ~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         162 RSVRDVFHVATVASLGRG  179 (222)
T ss_pred             cCHHHHHHHHHHHHHhcc
Confidence            5 9999999999887643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.6e-36  Score=222.74  Aligned_cols=187  Identities=43%  Similarity=0.718  Sum_probs=157.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      .||+++|++|+|||||+++|..+.++..+.+|....+...+.+++..+.+++||++|++.|..++..+++.+|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            38999999999999999999999999988899877777777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++++|+.+...|+..+....++.|+++|+||+|+...+...  ......+.+..+++.++++..+..+|+++||++|.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            9999999998557998888777899999999999997653211  11122234677888889988886689999999999


Q ss_pred             CHHHHHHHHHHHHcCCchhhHHHHhhhcccCCccccc
Q 028239          165 NVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIA  201 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~  201 (211)
                      |++++|.++++.+.....        ..+.++.|.+|
T Consensus       161 ~v~e~f~~l~~~~~~~~~--------~~~~~~~~~~~  189 (189)
T cd04134         161 GVNEAFTEAARVALNVRP--------PHPHSSACTIA  189 (189)
T ss_pred             CHHHHHHHHHHHHhcccc--------cCcCCCcceeC
Confidence            999999999999975443        35567777764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.3e-36  Score=220.30  Aligned_cols=172  Identities=52%  Similarity=0.954  Sum_probs=149.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|.+|+|||||+.+|..+.|+..+.||.+..+...+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            37999999999999999999999999999999998878767788899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++++|+.+...|...+....+++|+++||||+|+.......  ......+.++.+++++++++.+..+|+++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            99999999998446988888776789999999999986542211  1112235688899999999988669999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      .|++++|+.+++.+
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.4e-36  Score=225.37  Aligned_cols=163  Identities=29%  Similarity=0.579  Sum_probs=145.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +.|+++|..|+|||||+.+|..+.|...+.+|.+..+ ...+.+++..+.+++||++|+++|++++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4699999999999999999999999998888886444 567888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |+++++||+.+ ..|+..+.... ++.|+++||||+|+...+.          +...++.++++......|+++||++|.
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~~~~etSAktg~  149 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNF  149 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            99999999999 88999888765 6899999999999976544          888899999988633489999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 028239          165 NVKAVFDTAIKVVLQP  180 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~  180 (211)
                      ||+++|+++++.+...
T Consensus       150 gV~e~F~~l~~~~~~~  165 (202)
T cd04120         150 NVDEIFLKLVDDILKK  165 (202)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=223.50  Aligned_cols=184  Identities=33%  Similarity=0.572  Sum_probs=158.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ...+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+++|||||+++|..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            55799999999999999999999999998888898888887888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++++|+.+ ..|...+....  ++.|+++|+||+|+...+.          +...++..+++..+. +|+++||+
T Consensus        83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak  150 (189)
T PTZ00369         83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK  150 (189)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence            9999999999999 78888877654  5889999999999876443          677788888888887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhHHHHhhhcccCCcccc
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSI  200 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~  200 (211)
                      +|.|++++|.++++.+....... ....+.+++.+-|.+
T Consensus       151 ~~~gi~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~  188 (189)
T PTZ00369        151 QRVNVDEAFYELVREIRKYLKED-MPSQKQKKKGGLCLI  188 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcc-chhhhhhccCCeeee
Confidence            99999999999999987764433 344455555555654

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.4e-36  Score=222.59  Aligned_cols=186  Identities=47%  Similarity=0.874  Sum_probs=158.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||+++|.++.++..+.++....+...+... +..+.+.+|||||++++..+++.+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999999899888877776666665 77889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      |++++++|+++...|+..+....++.|+++|+||.|+.....      ..+.+..+++.+++...+..+++++||++|.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            999999999985578888876667899999999999865321      11246788899999998876899999999999


Q ss_pred             HHHHHHHHHHHHcCCchhhHHHHhhhcccCCccccc
Q 028239          166 VKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIA  201 (211)
Q Consensus       166 v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~  201 (211)
                      ++++|+.+++.+.....+.   ..++..++++|.+|
T Consensus       155 v~~~f~~l~~~~~~~~~~~---~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKA---IFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhh---hhccCCCCcccccC
Confidence            9999999999998766555   34456667777664

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=7.1e-37  Score=225.91  Aligned_cols=182  Identities=36%  Similarity=0.609  Sum_probs=154.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|.+|+|||||+++|..+.+...+.+|.++.+...+.+++..+.+++||+||+++|..++..+++.+|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888888877777777888889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           88 ISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ++.++|..+ ..|+..+....    ++.|+++|+||+|+...+.          +...++.++++.++. +|+++||++|
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~  148 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN  148 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            999999998 78888776543    4789999999999976543          777788888888887 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCCchhhHH----HHhhhcccCCccccc
Q 028239          164 QNVKAVFDTAIKVVLQPPRRKEM----MARKKRHRRSSCSIA  201 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~~~~~~~~----~~~~~~~~~~~c~~~  201 (211)
                      .|++++|+++++.+..+......    ...++++++.+|.+|
T Consensus       149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            99999999999998766555422    233345556666553

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.2e-36  Score=219.86  Aligned_cols=162  Identities=27%  Similarity=0.525  Sum_probs=147.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|.+|+|||||++++..+.++..+.+|.+..+...+.+++..+.+++||+||++.+..++..+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            58999999999999999999999999988889988777777888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++.+|+.+ ..|...+.+..  +++|+++|+||+|+.+.+.          ++.+++.++++..+. +|+++||++|
T Consensus        82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~  149 (172)
T cd04141          82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR  149 (172)
T ss_pred             ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence            99999999999 77888777643  5899999999999976543          788899999999887 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .||+++|+++++.+..
T Consensus       150 ~~v~~~f~~l~~~~~~  165 (172)
T cd04141         150 HYIDDAFHGLVREIRR  165 (172)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998875

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.1e-35  Score=216.45  Aligned_cols=171  Identities=63%  Similarity=1.054  Sum_probs=148.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|.+|+|||||+.++..+.+...+.+|....+...+.+++..+.+++|||||++.|..++..+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            47999999999999999999999999999999987777777788899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++++|..+...|+..+....++.|++||+||+|+.+.+...  ......+.++.+++.+++++++..+|+++||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            99999999998557888887766789999999999996532110  1111234588999999999999669999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKV  176 (211)
Q Consensus       164 ~~v~~lf~~l~~~  176 (211)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.3e-35  Score=219.74  Aligned_cols=170  Identities=27%  Similarity=0.467  Sum_probs=148.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999999888888887554 4566777 7889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      ||++++++|+.+ ..|+..+....     .++|++||+||+|+...+.          +..+++.++++..+..+|+++|
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S  149 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS  149 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence            999999999999 88988876532     5789999999999975433          7888999999999855999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhhHHH
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRKEMM  187 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~~~~  187 (211)
                      |++|.|++++|+++++.+....+...+.
T Consensus       150 ak~~~~v~e~f~~l~~~l~~~~~~~~~~  177 (201)
T cd04107         150 AKEGINIEEAMRFLVKNILANDKNLQQA  177 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhchhhHhh
Confidence            9999999999999999998765544443

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.2e-37  Score=206.13  Aligned_cols=165  Identities=35%  Similarity=0.618  Sum_probs=154.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..++.+|+|++|+|||+|+-+|..+.|...|..|.+..+ .+++.++|..+.++|||++|+++|+.+...+++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            346889999999999999999999999999999997555 5788999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |||+++.+||.++ .+|++.++..++..|-++||||+|++..+.          +..++++.|+...++ .+||+||+++
T Consensus        87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~  154 (198)
T KOG0079|consen   87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKEN  154 (198)
T ss_pred             EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhc
Confidence            9999999999999 999999999999999999999999998876          999999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCCc
Q 028239          164 QNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~~~  181 (211)
                      .|++..|.-|.+...+..
T Consensus       155 ~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  155 ENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence            999999999988876644

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-36  Score=213.12  Aligned_cols=174  Identities=34%  Similarity=0.584  Sum_probs=161.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+++|++++|||-|+.||..+.|..+..+|.+..+ ...+.++++.++.+||||+||++|+.....+++.+.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            4678999999999999999999999999999999998666 567899999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++...+|+.+ .+|+.+++.+. +++++++||||+||.+.+.          +..++++.+++..+. .|+++||.
T Consensus        92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl  159 (222)
T KOG0087|consen   92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL  159 (222)
T ss_pred             EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence            99999999999999 99999999988 8999999999999998766          999999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhHHHHh
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKEMMAR  189 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~  189 (211)
                      ++.||+++|..++..|+..-.++.....
T Consensus       160 ~~tNVe~aF~~~l~~I~~~vs~k~~~~~  187 (222)
T KOG0087|consen  160 DATNVEKAFERVLTEIYKIVSKKQLDEN  187 (222)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999887766655433

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.1e-34  Score=211.24  Aligned_cols=171  Identities=60%  Similarity=1.040  Sum_probs=149.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI   88 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   88 (211)
                      |+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+++|||||++.|..++..+++.+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            68999999999999999999999998888888777777888999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239           89 SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                      ++++|+.+...|+..+....++.|+++|+||+|+.......  ........++.+++.++++..+..+|+++||++|.|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            99999998567999998877899999999999997533211  1122234578889999999999778999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028239          167 KAVFDTAIKVVLQ  179 (211)
Q Consensus       167 ~~lf~~l~~~~~~  179 (211)
                      +++|+.+++.+++
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998865

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=9.1e-35  Score=210.25  Aligned_cols=162  Identities=33%  Similarity=0.638  Sum_probs=144.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999999888888876555 35567888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||++++++|+.+ ..|+..+.... ++.|+++|+||+|+...+.          ++.+++.++++..+. +|+++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  149 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG  149 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999999 88988876654 6899999999999977654          788889999998887 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .|++++|.++++.+.+
T Consensus       150 ~~i~e~f~~l~~~~~~  165 (166)
T cd04122         150 ENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1e-34  Score=209.15  Aligned_cols=160  Identities=33%  Similarity=0.604  Sum_probs=142.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||++++..+.+...+.+|....+...+.+++..+.+.+||+||+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            37999999999999999999999999888888887777777888998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++++++.+ ..|...+....  ++.|+++|+||+|+...+.          +..+++..+++.++. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04136          81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCC
Confidence            99999999998 78888877653  5899999999999976543          677777888888885 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      .|+.++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~~  162 (163)
T cd04136         149 INVDEVFADLVRQI  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-35  Score=200.02  Aligned_cols=166  Identities=31%  Similarity=0.625  Sum_probs=153.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .-+|++++|...+|||||+.++.+..|...+.+|.+..+. +++....+.+.+++|||+|+++|+.++..++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            3469999999999999999999999999999999887664 566667788999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +||++|.+||..+ +.|...+.... .+.|+|+|+||||+.+++.          ++.+.++.+++++|. .|||+||+.
T Consensus       100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~  167 (193)
T KOG0093|consen  100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE  167 (193)
T ss_pred             EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence            9999999999999 99999999887 6999999999999999876          999999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCch
Q 028239          163 QQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +.||+.+|+.++..+-+...
T Consensus       168 NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  168 NINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             cccHHHHHHHHHHHHHHHhh
Confidence            99999999999998865443

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.2e-34  Score=209.13  Aligned_cols=161  Identities=31%  Similarity=0.589  Sum_probs=143.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      ++||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.+..++..+++.+|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            47999999999999999999999988888888888777778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++..+|+.+ ..|...+....  ++.|+++|+||+|+.....          +...+..++++..+. +|+++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (164)
T cd04175          81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence            99999999998 77877776543  6899999999999976543          667777888888886 9999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 028239          164 QNVKAVFDTAIKVVL  178 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~  178 (211)
                      .|++++|.++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.9e-34  Score=214.35  Aligned_cols=166  Identities=31%  Similarity=0.576  Sum_probs=147.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||+||++.+...+..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            4578999999999999999999999999888888876443 456677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +|||++++++|+.+ ..|+..+....+..|++||+||+|+.....          +..+++..+++..+. +|+++||++
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  151 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE  151 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence            99999999999999 889999888778899999999999976543          677888888888886 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCc
Q 028239          163 QQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~~  181 (211)
                      |.||+++|+++.+.+....
T Consensus       152 ~~gi~~lf~~l~~~~~~~~  170 (199)
T cd04110         152 NINVEEMFNCITELVLRAK  170 (199)
T ss_pred             CcCHHHHHHHHHHHHHHhh
Confidence            9999999999999997643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.4e-36  Score=202.19  Aligned_cols=174  Identities=30%  Similarity=0.545  Sum_probs=159.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+|++++|+.|+|||+|+.+|..++|.++...|.+..+ ++.+.+.++.++++||||+|+++|++....+++.+.+.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            3567999999999999999999999999999999998766 678889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++++|+.+ ..|+.-.+... +++-++++|||.||.+++.          ++..++..|+++... .++|+||+
T Consensus        87 LVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~  154 (214)
T KOG0086|consen   87 LVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL  154 (214)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeeccc
Confidence            99999999999999 99999988887 6888999999999998876          999999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhHHHHh
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKEMMAR  189 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~  189 (211)
                      +|+||++.|-...+.++...+..+..+.
T Consensus       155 TGeNVEEaFl~c~~tIl~kIE~GElDPe  182 (214)
T KOG0086|consen  155 TGENVEEAFLKCARTILNKIESGELDPE  182 (214)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhcCCCHH
Confidence            9999999999999998876665554433

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=8.6e-34  Score=206.55  Aligned_cols=172  Identities=52%  Similarity=0.982  Sum_probs=149.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||++++..+.+.+.+.++..+.+...+.+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877777778889989999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc--cccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY--LADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++.+|+.+...|...+....++.|+++|+||+|+.+....  .......+.++.+++..+++..+..+|+++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            999999999866788888776689999999999998654211  112223345778889999999987789999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 028239          165 NVKAVFDTAIKVVL  178 (211)
Q Consensus       165 ~v~~lf~~l~~~~~  178 (211)
                      |++++|+.+++.++
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.3e-34  Score=212.19  Aligned_cols=168  Identities=30%  Similarity=0.551  Sum_probs=147.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999999887888876544 466778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++++|..+ ..|+..+.... .+.|+++|+||+|+.+...          ++.+++..+++..+. +|+++||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~  148 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI  148 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999999 78999888765 4789999999999986543          777888888888887 99999999999


Q ss_pred             CHHHHHHHHHHHHcCCchhhHH
Q 028239          165 NVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      |++++|.++++.+..+....+.
T Consensus       149 ~i~~~f~~l~~~~~~~~~~~~~  170 (188)
T cd04125         149 NVEEAFILLVKLIIKRLEEQEL  170 (188)
T ss_pred             CHHHHHHHHHHHHHHHhhcCcC
Confidence            9999999999999876554444

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.4e-34  Score=216.22  Aligned_cols=162  Identities=29%  Similarity=0.453  Sum_probs=143.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +||+++|++|+|||||+++|.++.+...+.+|.+ +.+...+.+++ ..+.++|||+||++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999886 44455666654 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ||++++++|+.+ ..|+..+.+..    .++|+++|+||.|+.+.+.          +..+++.++++.++. +++++||
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA  148 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA  148 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999999 88999888764    3568999999999976543          788888999999887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 028239          161 KTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++|+|++++|+++++.+...
T Consensus       149 ktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.3e-34  Score=207.19  Aligned_cols=159  Identities=40%  Similarity=0.843  Sum_probs=148.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      ||+++|++++|||||+++|.++.+++.+.+|. .+.+...+.+++..+.+++||++|++.+...+..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998 56667888999999999999999999999888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      +++++||+.+ ..|+..+....+ +.|++|||||.|+.+.+.          ++.++++++++.++. +|+++||+++.|
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  148 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN  148 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence            9999999999 799999999886 799999999999987554          899999999999995 999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 028239          166 VKAVFDTAIKVVL  178 (211)
Q Consensus       166 v~~lf~~l~~~~~  178 (211)
                      |.++|..+++.+.
T Consensus       149 v~~~f~~~i~~i~  161 (162)
T PF00071_consen  149 VKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=4.3e-34  Score=206.92  Aligned_cols=163  Identities=33%  Similarity=0.641  Sum_probs=145.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999999998888886554 4567788888999999999999999988889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++++|..+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA  149 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999999 78999888765 5799999999999986543          677788888888887 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      |.|++++|+++.+.+..
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998854

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=6.6e-34  Score=204.77  Aligned_cols=158  Identities=34%  Similarity=0.628  Sum_probs=142.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+++||++|++++...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999999888888876544 466788888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++++|+.+ ..|+..+.... .+.|+++|+||.|+...+.          +..+++..+++..+. +|+++||++|.
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 88999887766 4799999999999976654          788899999998886 99999999999


Q ss_pred             CHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKV  176 (211)
Q Consensus       165 ~v~~lf~~l~~~  176 (211)
                      |++++|.+|++.
T Consensus       149 ~v~~~f~~l~~~  160 (161)
T cd04117         149 NIKESFTRLTEL  160 (161)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=5.2e-34  Score=208.82  Aligned_cols=164  Identities=38%  Similarity=0.631  Sum_probs=143.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEEC----------CeEEEEEEEeCCCCcCcccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVD----------GSIVNLGLWDTAGQEDYSRLRP   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~l~D~~G~~~~~~~~~   72 (211)
                      ++.+||+++|++|+|||||++++.++.+.+.+.+|.+..+. ..+.+.          +..+.+.+||+||++++...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            35699999999999999999999999999988888765443 334433          4568899999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI  150 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (211)
                      .+++++|++++|||++++++|..+ ..|+..+....  ++.|+++|+||+|+.+.+.          ++.+++.++++..
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~  150 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKY  150 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHc
Confidence            999999999999999999999999 88998887654  6899999999999976544          7788899999999


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +. +++++||++|.|++++|+++++.+++
T Consensus       151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         151 GI-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            87 99999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=8.5e-34  Score=204.49  Aligned_cols=160  Identities=30%  Similarity=0.591  Sum_probs=142.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|.+|+|||||++++..+.+...+.+|..+.+...+.+++..+.++|||+||+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888887666777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++.+|+++ ..|...+....  .+.|+++|+||+|+.....          +...+...+++..+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04176          81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            99999999999 78888877654  5899999999999875443          666777888888876 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      .|+.++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd04176         149 TMVNELFAEIVRQM  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4.6e-34  Score=211.05  Aligned_cols=165  Identities=35%  Similarity=0.657  Sum_probs=143.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +||+++|++|+|||||++++..+.+. ..+.+|.+..+ ...+.+++..+.++|||+||++++...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 45667765444 34577888899999999999999999888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||++++++++++ ..|+..+.... .++|+++|+||.|+...+.          +..+++..+++.++. +|+++||++|
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~  148 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG  148 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999999 88998888766 4789999999999975443          677788888888887 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCCchh
Q 028239          164 QNVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~~~~~  183 (211)
                      .|++++|.++++.+......
T Consensus       149 ~~v~~l~~~l~~~~~~~~~~  168 (191)
T cd04112         149 LNVELAFTAVAKELKHRKYE  168 (191)
T ss_pred             CCHHHHHHHHHHHHHHhccc
Confidence            99999999999999876433

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=7.6e-34  Score=204.88  Aligned_cols=160  Identities=36%  Similarity=0.655  Sum_probs=142.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||++++.+..+...+.++..+.+...+.+++..+.+.+||+||++++..++..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999998888888877777778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++++++.+ ..|...+....  .+.|+++|+||+|+...+.          +..+++..+++..+. +|+++||++|.
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence            9999999998 78877776543  4789999999999976543          677788888888886 99999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 028239          165 NVKAVFDTAIKVVL  178 (211)
Q Consensus       165 ~v~~lf~~l~~~~~  178 (211)
                      |++++|+++++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.9e-33  Score=204.66  Aligned_cols=169  Identities=51%  Similarity=0.942  Sum_probs=145.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||+.++.++.+...+.+|..+.+...+.+++..+.+++||+||++.+..++..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999999999999999999877777778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++++|+.+...|+..+....++.|+++|+||.|+.......  ......+.+..+++..+++..+..+|+++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            9999999998567888888766789999999999986432100  11112345788899999999987799999999999


Q ss_pred             CHHHHHHHHHH
Q 028239          165 NVKAVFDTAIK  175 (211)
Q Consensus       165 ~v~~lf~~l~~  175 (211)
                      |++++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.9e-34  Score=212.57  Aligned_cols=173  Identities=28%  Similarity=0.413  Sum_probs=136.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|.+++|||||+++|..+.+.. +.+|.+..+... ..  ..+.+.+||+||++.|..++..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-QW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-Ee--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999875 456655433211 12  45788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccc---------cccccCCccccHHHHHHHHHHhCC----
Q 028239           87 LISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGY---------LADHVGSNVITTAQGEELRKQIGA----  152 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----  152 (211)
                      ++++++|..+ ..|+..+.+. .+++|+||||||+|+.+....         .......+.++.+++.+++++.+.    
T Consensus        77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            9999999999 5555555543 367999999999999752110         111122456899999999999872    


Q ss_pred             ---------ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          153 ---------AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       153 ---------~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                               .+|+|+||++|.||+++|..+++.+.....+.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~  196 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ  196 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence                     38999999999999999999999887543333

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=7.5e-35  Score=209.89  Aligned_cols=179  Identities=62%  Similarity=1.069  Sum_probs=164.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+|++|+|+..+|||+|+-.+..+.|+..|.||..+.+...+.++ ++.+.+.+|||+|+++|+.+++..++++|.|+
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35789999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +||++.+++||+++...|+.++.++.|+.|+|+||+|.||.++....  ..+.....++.+++..+++++++..|+||||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            99999999999999999999999999999999999999998543211  2223455699999999999999989999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCch
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ++..|+.++|+..++.++...+
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999998776

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.5e-33  Score=203.76  Aligned_cols=160  Identities=32%  Similarity=0.656  Sum_probs=141.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999999888888876544 345667788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++..+. +++++||++|.
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI  149 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999999 88998887765 5889999999999976553          667788888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 028239          165 NVKAVFDTAIKVVL  178 (211)
Q Consensus       165 ~v~~lf~~l~~~~~  178 (211)
                      |++++|+++.+.+.
T Consensus       150 gv~~l~~~l~~~~~  163 (165)
T cd01865         150 NVKQVFERLVDIIC  163 (165)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.6e-33  Score=212.06  Aligned_cols=163  Identities=28%  Similarity=0.461  Sum_probs=142.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||+++|.+|+|||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|+++|..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4678999999999999999999999999888888886444 456667778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +|||++++++|+.+ ..|+..+....++.|+++||||+|+....           +..++. ++++..+. +|+++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999999 89999998777899999999999996432           344444 66677666 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.|++++|+++++.+.+.
T Consensus       157 ~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            999999999999999765

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.5e-33  Score=206.48  Aligned_cols=171  Identities=28%  Similarity=0.537  Sum_probs=143.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|..|+|||||+++|..+.+.+.+.+|.+..+ .+.+.+++..+.+++||++|++.|..+++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999998999987555 467888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++++|.++ ..|+..+....+ ..| ++||||+|+.....    ....+ ...++++++++..+. +++++||++|.
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~----~~~~~-~~~~~~~~~a~~~~~-~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP----PEEQE-EITKQARKYAKAMKA-PLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc----chhhh-hhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 889998877653 456 68899999963210    00011 224677888888886 99999999999


Q ss_pred             CHHHHHHHHHHHHcCCchhhH
Q 028239          165 NVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      |++++|+++++.+.+-+....
T Consensus       153 ~v~~lf~~l~~~l~~~~~~~~  173 (182)
T cd04128         153 NVQKIFKIVLAKAFDLPLTIP  173 (182)
T ss_pred             CHHHHHHHHHHHHHhcCCChh
Confidence            999999999999876444433

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.6e-33  Score=202.51  Aligned_cols=159  Identities=38%  Similarity=0.638  Sum_probs=141.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+++||+||++++..++..+++.+|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            37999999999999999999999999888888888777777888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++..+++++ ..|...+.+..  ++.|+++|+||+|+....           +...++.++++..+. +++++||++|
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (162)
T cd04138          81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR  147 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence            99999999998 77877777654  589999999999987632           567778888888887 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      .|++++|+++++.+
T Consensus       148 ~gi~~l~~~l~~~~  161 (162)
T cd04138         148 QGVEEAFYTLVREI  161 (162)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.7e-33  Score=203.44  Aligned_cols=158  Identities=27%  Similarity=0.535  Sum_probs=139.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||+++++++.+...+.++....+...+..++..+.+.+||+||++++..++..+++.+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888877777777778888999999999999999988888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ++++++++.+ ..|+..+....    +++|+++|+||+|+...+.          +..+++..++...+. +|+++||++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~  149 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT  149 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence            9999999998 78877776543    5799999999999976443          777788888888886 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028239          163 QQNVKAVFDTAIKV  176 (211)
Q Consensus       163 ~~~v~~lf~~l~~~  176 (211)
                      |.|++++|++|+..
T Consensus       150 g~~v~~~f~~l~~~  163 (165)
T cd04140         150 NHNVQELFQELLNL  163 (165)
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.4e-33  Score=202.72  Aligned_cols=161  Identities=32%  Similarity=0.682  Sum_probs=143.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999998888778776444 46677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||++++++|..+ ..|+..+.... ++.|+++|+||+|+.....          +..+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA  149 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            999999999999 78999888766 6799999999999876543          777888899998887 9999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 028239          164 QNVKAVFDTAIKVVL  178 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~  178 (211)
                      .|++++|.++++.+.
T Consensus       150 ~~v~~~~~~i~~~~~  164 (166)
T cd01869         150 TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.7e-33  Score=201.93  Aligned_cols=160  Identities=36%  Similarity=0.642  Sum_probs=142.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+++||+||++++..++..+++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999999998888888887777777788888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++..+++.+ ..|...+....  .+.|+++|+||+|+...+.          +..+++.++++..+. +++++||++|
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (164)
T cd04145          82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR  149 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence            99999999998 78887777643  5889999999999976543          677788888888886 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      .|++++|+++++.+
T Consensus       150 ~~i~~l~~~l~~~~  163 (164)
T cd04145         150 LNVDKAFHDLVRVI  163 (164)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4.5e-33  Score=206.41  Aligned_cols=184  Identities=24%  Similarity=0.408  Sum_probs=143.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCcccc--------ccccccC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSYRG   77 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~~   77 (211)
                      +||+|+|.+|+|||||+++|.++.++..+.++.+.. +...+.+++..+.+++|||||.+.+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888887543 3456678898899999999997655321        2234789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      +|++++|||++++++|+.+ ..|++.+.+..    +++|+++|+||+|+...+.          +..++.+.++.+...+
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~  149 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC  149 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence            9999999999999999998 88887776642    5799999999999976543          5666677766544334


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcCCchhhHH-HHhhhcccCCccccc
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM-MARKKRHRRSSCSIA  201 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~-~~~~~~~~~~~c~~~  201 (211)
                      +|+++||++|.|++++|+.+++.++.+.....+ ...+..--+..|++|
T Consensus       150 ~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (198)
T cd04142         150 GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM  198 (198)
T ss_pred             cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence            999999999999999999999999877655433 222323345566654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6e-33  Score=200.71  Aligned_cols=160  Identities=30%  Similarity=0.532  Sum_probs=137.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999988888888886544 445566788899999999999999999899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      |++++++++.+ ..|+..+.....++|+++|+||+|+....           +. .+..++++..+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~  146 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN  146 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            99999999999 88999998877789999999999997432           22 234556666555 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028239          166 VKAVFDTAIKVVLQP  180 (211)
Q Consensus       166 v~~lf~~l~~~~~~~  180 (211)
                      ++++|++|++.+.+.
T Consensus       147 v~~~f~~l~~~~~~~  161 (166)
T cd00877         147 FEKPFLWLARKLLGN  161 (166)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999999998753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=5.3e-33  Score=200.05  Aligned_cols=159  Identities=26%  Similarity=0.515  Sum_probs=137.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||++++..+.+.+.+.++... .+.....+++..+.+++|||||++.|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777643 33456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      |++++.++.++ ..|+..+.+..++.|+++|+||+|+...            . ..+...+++..+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------------~-~~~~~~~~~~~~~-~~~~~Sa~~~~g  145 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS------------V-TQKKFNFAEKHNL-PLYYVSAADGTN  145 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh------------H-HHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999998 8999999877778999999999998432            1 2345566676666 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 028239          166 VKAVFDTAIKVVLQP  180 (211)
Q Consensus       166 v~~lf~~l~~~~~~~  180 (211)
                      ++++|+.+++.+.++
T Consensus       146 v~~l~~~l~~~~~~~  160 (161)
T cd04124         146 VVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=5.5e-33  Score=205.33  Aligned_cols=168  Identities=40%  Similarity=0.662  Sum_probs=133.6

Q ss_pred             eeEEEEECCCCCCHHHHHH-HHhcCC-----CCCCCCCcee--eeeeEE--------EEECCeEEEEEEEeCCCCcCccc
Q 028239            6 FIKCVTVGDGAVGKTCMLI-CYTSNK-----FPTDYIPTVF--DNFSAN--------VAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~-~l~~~~-----~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      .+||+++|.+++|||||+. ++.++.     +...+.||.+  +.+...        +.+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4899999999999999995 565443     4566777774  233222        25788999999999999975  3


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc---------ccccCCccccH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL---------ADHVGSNVITT  140 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---------~~~~~~~~~~~  140 (211)
                      +...+++++|++++|||++++.||+.+...|+..+....++.|+++||||+|+.+.....         ......+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            456689999999999999999999998446999888777789999999999986421100         00011356899


Q ss_pred             HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          141 AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++++++++.+. +|+||||++|.||+++|+.+++.
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999998 99999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3.1e-33  Score=202.09  Aligned_cols=161  Identities=25%  Similarity=0.566  Sum_probs=142.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888886554 556778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC------CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           86 SLISRASYENVLKKWMPELRRFA------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      |++++.+++.+ ..|+..+....      .+.|+++|+||+|+.....          ++.++.+.+++..+. +++++|
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  148 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS  148 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            99999999998 88988887664      3689999999999975332          678888888888885 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|.|++++|+++++.+++
T Consensus       149 a~~~~gi~~l~~~l~~~l~~  168 (168)
T cd04119         149 ACTGEGVNEMFQTLFSSIVD  168 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHhC
Confidence            99999999999999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=5e-33  Score=201.84  Aligned_cols=163  Identities=35%  Similarity=0.650  Sum_probs=142.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +++..+||+++|++++|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++++..++..+++.+|+
T Consensus         1 ~~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   80 (170)
T cd04116           1 GKSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC   80 (170)
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence            356779999999999999999999999998887777776444 4567788999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      +++|||++++++++.+ ..|...+....     ++.|+++|+||.|+....           +..+++++++++.+..++
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~  148 (170)
T cd04116          81 CLLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----------VSTEEAQAWCRENGDYPY  148 (170)
T ss_pred             EEEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-----------cCHHHHHHHHHHCCCCeE
Confidence            9999999999999998 78887776533     468999999999987322           678889999998886689


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++||++|.|+.++|+++++.
T Consensus       149 ~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         149 FETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            999999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=197.89  Aligned_cols=171  Identities=32%  Similarity=0.639  Sum_probs=157.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      +...+||+++|..-+|||||+-+++.++|.....+|....| .+.+.+.+....+.||||+|+++|..+-+.+++.++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            35679999999999999999999999999999999986555 57788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++|.+||+.+ +.|...++... ..+-+++||||+||..++.          ++..++..+++..++ .|+++||
T Consensus        90 lLVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSA  157 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSA  157 (218)
T ss_pred             EEEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccc
Confidence            999999999999999 99999999887 5678899999999998876          999999999999999 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhhH
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      +++.||.++|+.+.+.+++.....+
T Consensus       158 k~N~Gi~elFe~Lt~~MiE~~s~~q  182 (218)
T KOG0088|consen  158 KDNVGISELFESLTAKMIEHSSQRQ  182 (218)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999988654443

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=3.6e-33  Score=200.90  Aligned_cols=158  Identities=34%  Similarity=0.570  Sum_probs=140.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD--GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +||+++|.+++|||||++++.++.+...+.+|.+..+ ...+.+.  +..+.+++||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999998888888876554 4555666  778999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |||+++++++..+ ..|+..+....++.|+++|+||.|+..+..          +..+++.++++..+. +++++||+++
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD  148 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            9999999999998 889998887778999999999999976543          777888899999887 9999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKV  176 (211)
Q Consensus       164 ~~v~~lf~~l~~~  176 (211)
                      .|++++|++|.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (162)
T cd04106         149 FNVTELFEYLAEK  161 (162)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=5e-33  Score=208.28  Aligned_cols=169  Identities=31%  Similarity=0.596  Sum_probs=148.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGAD   79 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   79 (211)
                      |...+.+||+|+|++|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            6777889999999999999999999999988887777775444 456778888899999999999999988888999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      ++++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+...+.          ++.++++++++..+. +|+++
T Consensus        81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~  148 (210)
T PLN03108         81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA  148 (210)
T ss_pred             EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence            99999999999999998 78887776554 6899999999999977554          788899999999887 99999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCCc
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ||+++.|++++|.++++.+++..
T Consensus       149 Sa~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        149 SAKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999997643

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=5.2e-33  Score=200.81  Aligned_cols=161  Identities=31%  Similarity=0.543  Sum_probs=141.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999998888777776543 34567788888899999999999999988999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.+++.+ ..|+..+.... +++|+++|+||+|+...+.          +..+++..+++..+...++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE  150 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence            9999999999998 89999887754 6899999999999976543          6778888999988876899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028239          163 QQNVKAVFDTAIKV  176 (211)
Q Consensus       163 ~~~v~~lf~~l~~~  176 (211)
                      |.|++++|+++.+.
T Consensus       151 ~~~v~~~~~~l~~~  164 (165)
T cd01864         151 SQNVEEAFLLMATE  164 (165)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.1e-32  Score=203.99  Aligned_cols=167  Identities=32%  Similarity=0.536  Sum_probs=143.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +||+++|++|+|||||+++|.++.+.. .+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 6777876655 45678899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ||++++.+++.+ ..|+..+....++.|+++|+||+|+.....      ..+.+...++.+++...+. +++++||+++.
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999998 889998887667899999999999864321      1123566778888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCc
Q 028239          165 NVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~  181 (211)
                      |++++|+++.+.+.+..
T Consensus       153 gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         153 NVDELFQKVAEDFVSRA  169 (193)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999987643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.2e-34  Score=196.69  Aligned_cols=168  Identities=32%  Similarity=0.544  Sum_probs=149.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+++.++|++-+|||+|++.|..+++++-..||.+..+ ..-+.+ ++..+++++|||+|+++|++++..+++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            568999999999999999999999999999999987554 444443 688999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--C-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--P-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +|||++|.+||+.+ +.|+.+-..+.  | ++-+.+||+|+|+..++.          |+.+|+++++...+. .|+|+|
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS  154 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS  154 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence            99999999999999 89988766554  4 445689999999998764          999999999999999 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      |++|.||++.|..+.+.++....+.
T Consensus       155 ak~g~NVeEAF~mlaqeIf~~i~qG  179 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIFQAIQQG  179 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999987765553

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=2.2e-32  Score=199.29  Aligned_cols=171  Identities=49%  Similarity=0.911  Sum_probs=146.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      .||+++|++|+|||||+++|..+.+++.+.+|....+...+.+++..+.+.+|||||++.+...+...++++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888877776777888888999999999999999998889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      +++.++|+.+...|...+.+..++.|+++|+||+|+.......  ........+...+++++++..+..+++++||++|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            9999999998667888888766789999999999986532211  11112234667888999998887789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKVV  177 (211)
Q Consensus       165 ~v~~lf~~l~~~~  177 (211)
                      |++++|+++.+.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=6.1e-33  Score=207.84  Aligned_cols=165  Identities=33%  Similarity=0.572  Sum_probs=143.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+||+++|++|+|||||+++|.++.+...+.+|.+.. +...+.+ ++..+.+++||+||++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            5899999999999999999999999888877777543 3455555 4677899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++++|+++ ..|+..+....  ..+|++||+||.|+...+.          +..+++.++++..+. +|+++||+
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  149 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR  149 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence            9999999999999 78988887654  3578899999999977543          788889999999885 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +|.|++++|++|++.+.+...
T Consensus       150 ~g~~v~e~f~~l~~~~~~~~~  170 (211)
T cd04111         150 TGDNVEEAFELLTQEIYERIK  170 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.2e-32  Score=197.45  Aligned_cols=155  Identities=26%  Similarity=0.387  Sum_probs=131.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|+.|+|||||+.++..+.+.+.+.++. ..+...+.+++..+.+.+||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999998887776654 34456788899899999999999975     345688999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      +++++||+.+ ..|+..+....  +++|+++||||.|+....        .+.++.+++.++++..+..+|++|||++|.
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            9999999999 78888887765  678999999999985321        123888889999988764599999999999


Q ss_pred             CHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKV  176 (211)
Q Consensus       165 ~v~~lf~~l~~~  176 (211)
                      ||+++|..+++.
T Consensus       146 ~i~~~f~~~~~~  157 (158)
T cd04103         146 NVERVFQEAAQK  157 (158)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.8e-34  Score=192.80  Aligned_cols=171  Identities=30%  Similarity=0.567  Sum_probs=153.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||+++|..|+|||+|+++|..+-|++..-.|.+ +...+++.+++..+++++|||+|+++|++++..+++.++++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            3467999999999999999999999999988888876 445788999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++..++|.-+ +.|+.++.++. .++-.|+||||.|+.+.++          ++...+++|.+.... .|+++||+
T Consensus        85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsak  152 (213)
T KOG0095|consen   85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAK  152 (213)
T ss_pred             EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhccc
Confidence            99999999999998 99999999988 4666799999999998876          888889999988776 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhHH
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      +-+|++.+|..+.-.+....+....
T Consensus       153 ea~nve~lf~~~a~rli~~ar~~d~  177 (213)
T KOG0095|consen  153 EADNVEKLFLDLACRLISEARQNDL  177 (213)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999998888765554443

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.4e-32  Score=199.48  Aligned_cols=162  Identities=30%  Similarity=0.531  Sum_probs=139.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      ||+++|.+|+|||||+++++.+.+.+.+.+|.+..+ ...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999999999987555 4667788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC-C-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA-P-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      +++++++..+ ..|+..+.+.. + +.|+++|+||.|+.....        ..+..+++..+++.++. +|+++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~  151 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE  151 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            9999999998 88998875543 3 578999999999865321        01345677788888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 028239          165 NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~  179 (211)
                      |++++|+.+++.+.+
T Consensus       152 ~v~~lf~~l~~~~~~  166 (170)
T cd04108         152 NVREFFFRVAALTFE  166 (170)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1e-32  Score=207.38  Aligned_cols=164  Identities=32%  Similarity=0.580  Sum_probs=146.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.++|||+||++++..++..+++.++++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999998877778876544 5678888989999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.+|+.+ ..|+..+.... .++|+++|+||+|+...+.          +..+++..+++..+. +|+++||++
T Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~  158 (216)
T PLN03110         91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE  158 (216)
T ss_pred             EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 88988888765 5899999999999976554          777888889888876 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.|++++|+++++.+.+.
T Consensus       159 g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        159 ATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988663

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.6e-32  Score=197.48  Aligned_cols=158  Identities=33%  Similarity=0.604  Sum_probs=140.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777775443 456778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |+++++++..+ ..|+..+.... ++.|+++|+||.|+...+.          ++.+++..+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 88988877655 7899999999999976543          788888999999885 99999999999


Q ss_pred             CHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKV  176 (211)
Q Consensus       165 ~v~~lf~~l~~~  176 (211)
                      |++++|+++++.
T Consensus       149 ~i~~~~~~~~~~  160 (161)
T cd04113         149 NVEEAFLKCARS  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.7e-32  Score=197.66  Aligned_cols=163  Identities=31%  Similarity=0.614  Sum_probs=143.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999998887777765444 4566778888899999999999999988889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.+++.+ ..|+..+.... ++.|+++|+||.|+.....          ++.+++..++...+. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT  150 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999999 88998887754 7899999999999976543          778888888888887 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      +.|++++|.++.+.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=3.1e-32  Score=197.39  Aligned_cols=162  Identities=33%  Similarity=0.580  Sum_probs=143.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+++||+||+++|..++..+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            47999999999999999999999999888888887777777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++++++.+ ..|...+....  .+.|+++++||.|+...+.          +..++...+++..+..+++++||+++
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~  149 (168)
T cd04177          81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR  149 (168)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence            99999999999 78888776543  5899999999999976543          67777788888888559999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 028239          164 QNVKAVFDTAIKVVL  178 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~  178 (211)
                      .|++++|+++++.++
T Consensus       150 ~~i~~~f~~i~~~~~  164 (168)
T cd04177         150 TNVDEVFIDLVRQII  164 (168)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=5.8e-32  Score=199.20  Aligned_cols=175  Identities=46%  Similarity=0.794  Sum_probs=147.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      .||+|+|++|+|||||++++..+.++..+.++....+...+.+++..+.+.+||++|++.+...++..++.+|++++|||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988888877777777666677788888899999999999988877778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                      +++.++|+.+...|...+....+++|+++||||+|+.............+.+..+++..+++..+..+|+++||++|.|+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  161 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV  161 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence            99999999985579999987778899999999999854321111112234567788899999998778999999999999


Q ss_pred             HHHHHHHHHHHcCCc
Q 028239          167 KAVFDTAIKVVLQPP  181 (211)
Q Consensus       167 ~~lf~~l~~~~~~~~  181 (211)
                      +++|+++.+.++..+
T Consensus       162 ~~~f~~l~~~~~~~~  176 (187)
T cd04129         162 DDVFEAATRAALLVR  176 (187)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998886543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.4e-32  Score=198.64  Aligned_cols=159  Identities=31%  Similarity=0.545  Sum_probs=138.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc-cccccccccCCcEEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY-SRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~~~~~~~~~~~d~~i~v~d   86 (211)
                      ||+++|++|+|||||+++++.+.+.+.+.++....+...+.+++..+.+++||+||++.+ ...+..+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988888888876666677788888899999999999863 4456778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ++++++|+.+ ..|+..+....   ++.|+++|+||+|+...+.          ++.+++.++++..+. +|+++||+++
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~  148 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED  148 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence            9999999998 88888887754   4899999999999876543          778888899999886 9999999999


Q ss_pred             C-CHHHHHHHHHHHHc
Q 028239          164 Q-NVKAVFDTAIKVVL  178 (211)
Q Consensus       164 ~-~v~~lf~~l~~~~~  178 (211)
                      . |++++|+.+++.+.
T Consensus       149 ~~~v~~~f~~l~~~~~  164 (165)
T cd04146         149 YDGVHSVFHELCREVR  164 (165)
T ss_pred             chhHHHHHHHHHHHHh
Confidence            5 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=3.1e-32  Score=196.69  Aligned_cols=161  Identities=34%  Similarity=0.611  Sum_probs=141.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999999998877777776444 5667788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.++.++ ..|+..+.+..+ +.|+++|+||.|+...+.          +..++...+++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD  149 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999999 789998887764 699999999999976543          677788888887776 999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028239          163 QQNVKAVFDTAIKVV  177 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~  177 (211)
                      |.|++++|+++++.+
T Consensus       150 ~~~v~~l~~~l~~~i  164 (165)
T cd01868         150 GTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998876

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=1.5e-32  Score=209.57  Aligned_cols=164  Identities=27%  Similarity=0.465  Sum_probs=142.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|.+|+|||||+++|+.+.+...+.+|.++.+...+.+++..+.++||||+|++.|..++..++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888899887777788889999999999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh----------CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           87 LISRASYENVLKKWMPELRRF----------APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      +++.++|+.+ ..|.+.+...          ..+.|+|+|+||+|+...+.          +..+++.+++.......|+
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~  149 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF  149 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence            9999999999 7887777643          25799999999999976443          6777777776654344899


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++||++|.|++++|++|++.+..+.
T Consensus       150 evSAktg~gI~elf~~L~~~~~~p~  174 (247)
T cd04143         150 EVSAKKNSNLDEMFRALFSLAKLPN  174 (247)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcccc
Confidence            9999999999999999999875544

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.2e-32  Score=201.71  Aligned_cols=155  Identities=26%  Similarity=0.501  Sum_probs=136.0

Q ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh
Q 028239           12 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR   90 (211)
Q Consensus        12 iG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   90 (211)
                      +|.+++|||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.|||++|+++|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888888886444 56677888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239           91 ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF  170 (211)
Q Consensus        91 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf  170 (211)
                      .+|..+ ..|+..+....+++|+++||||+|+....           +..+. .++++..+. +|++|||++|.||.++|
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F  146 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF  146 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence            999999 88999998877899999999999986432           34333 467777776 99999999999999999


Q ss_pred             HHHHHHHcCC
Q 028239          171 DTAIKVVLQP  180 (211)
Q Consensus       171 ~~l~~~~~~~  180 (211)
                      +++++.+...
T Consensus       147 ~~l~~~i~~~  156 (200)
T smart00176      147 LWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.9e-32  Score=196.70  Aligned_cols=161  Identities=30%  Similarity=0.565  Sum_probs=141.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCcc-ccccccccCCcEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYS-RLRPLSYRGADIFV   82 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~~i   82 (211)
                      +.+||+++|++|+|||||+++++.+.++..+.++.+..+ ...+.+++..+.+.+||+||+++++ .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            358999999999999999999999998888777775443 4567788888999999999999887 57888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||+++++++..+ ..|+..+....  .++|+++|+||+|+...+.          +..+++.++++..+. +|+++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  148 (170)
T cd04115          81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA  148 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence            99999999999999 88998887654  5799999999999976554          778888889988875 9999999


Q ss_pred             CC---CCCHHHHHHHHHHHH
Q 028239          161 KT---QQNVKAVFDTAIKVV  177 (211)
Q Consensus       161 ~~---~~~v~~lf~~l~~~~  177 (211)
                      ++   +.+++++|..+++.+
T Consensus       149 ~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         149 KDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcCCCCHHHHHHHHHHHh
Confidence            99   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=200.98  Aligned_cols=167  Identities=30%  Similarity=0.591  Sum_probs=140.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||+|+|++|+|||||+++|.++.+. .+.++.+..+ ...+.+++..+.+.|||+||++++..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35689999999999999999999998874 4555655433 455677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++++|+.+...|...+....  .+.|+++|+||+|+...+.          +..++...+++..+. +|+++||
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SA  159 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSA  159 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            99999999999998556777666543  4689999999999976543          677778888888886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCch
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +++.|++++|++|.+.+.....
T Consensus       160 k~~~~v~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        160 KTRENVEQCFEELALKIMEVPS  181 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999977543

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=2.4e-31  Score=192.95  Aligned_cols=169  Identities=62%  Similarity=1.079  Sum_probs=145.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||+++|.+..+...+.++..+.+...+..++..+.+++||+||++.+...+...++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999998888888877777778888889999999999999988888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc-cccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA-DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      ++++.++......|...+....++.|+++|+||+|+........ .......+..+++.+++...+..+|+++||++|.|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            99999999887788888888777899999999999876543100 00112235678888898888877999999999999


Q ss_pred             HHHHHHHHHH
Q 028239          166 VKAVFDTAIK  175 (211)
Q Consensus       166 v~~lf~~l~~  175 (211)
                      ++++|+++++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.6e-31  Score=192.55  Aligned_cols=161  Identities=38%  Similarity=0.702  Sum_probs=141.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999988777777766544 456777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++.+++.+ ..|+..+.... +++|+++|+||+|+.....          +..+++.++++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999998 77988887766 6899999999999876443          677888888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 028239          165 NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~  179 (211)
                      |++++|+++.+.+.+
T Consensus       149 ~i~~l~~~i~~~~~~  163 (164)
T smart00175      149 NVEEAFEELAREILK  163 (164)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998754

Rab GTPases are implicated in vesicle trafficking.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.3e-31  Score=193.14  Aligned_cols=159  Identities=31%  Similarity=0.567  Sum_probs=136.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +||+++|++|+|||||++++..+  .+++.+.++.+..+ ...+.++ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  58888888886444 3445554 57799999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +|||+++++++..+ ..|+..+....++.|+++|+||+|+.....          +...+++.+....+. +++++||++
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR  148 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            99999999999998 899998887767899999999999976543          666666777777776 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028239          163 QQNVKAVFDTAIKVV  177 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~  177 (211)
                      +.|++++|+.+++.+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.5e-31  Score=193.98  Aligned_cols=164  Identities=20%  Similarity=0.294  Sum_probs=138.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .+.+||+++|.+|+|||||+++|+++.+. ..+.+|.+..+. ..+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35789999999999999999999999998 888898876654 5677788888899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ++|||++++.+++.+ ..|+..+.. ..++|+++|+||+|+.+...          +...+..++++.++...++++||+
T Consensus        82 llv~d~~~~~s~~~~-~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~  149 (169)
T cd01892          82 CLVYDSSDPKSFSYC-AEVYKKYFM-LGEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK  149 (169)
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHhcc-CCCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence            999999999999988 788776533 24799999999999965432          334455677788776457999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      ++.|++++|+.+.+.+..
T Consensus       150 ~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         150 LGDSSNELFTKLATAAQY  167 (169)
T ss_pred             cCccHHHHHHHHHHHhhC
Confidence            999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.2e-31  Score=191.79  Aligned_cols=160  Identities=36%  Similarity=0.653  Sum_probs=141.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ++||+++|++++|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998876777766544 56778888899999999999999998888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||+++++++..+ ..|+..+.... +..|+++++||+|+.....          ...++...+++..+. +++++||++|
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd01860          81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG  148 (163)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999999 88988887766 6799999999999875443          677788888888885 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      .|+.++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd01860         149 ENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-34  Score=195.45  Aligned_cols=168  Identities=37%  Similarity=0.591  Sum_probs=150.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEEC---------CeEEEEEEEeCCCCcCcccccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVD---------GSIVNLGLWDTAGQEDYSRLRPLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~---------~~~~~l~l~D~~G~~~~~~~~~~~   74 (211)
                      ..||.+.+|++|+||||++.++.+++|......|.+..+. +.+.++         +..+.+++|||+|+++|++++..|
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            4578899999999999999999999999999999877664 444442         357999999999999999999999


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      ++.|=+++++||+++..||.++ ..|+..+....  .++.++++|||+|+.+.+.          ++..++.+++++++.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl  156 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL  156 (219)
T ss_pred             HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC
Confidence            9999999999999999999999 99999988665  7899999999999999876          999999999999998


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                       ||||+||-+|.||++..+.+...++++.++-
T Consensus       157 -PYfETSA~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  157 -PYFETSACTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             -CeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999998887654443

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=2.5e-31  Score=193.05  Aligned_cols=163  Identities=35%  Similarity=0.615  Sum_probs=140.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||++++.+..+...+.++.+. .....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887777653 44556778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      |++++.+++.+ ..|...+....     .++|+++|+||+|+..+..          ...++...+.+..+..+++++||
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  149 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA  149 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence            99999999988 77877665544     2799999999999975433          56777888888887569999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 028239          161 KTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++|.|++++|+++.+.+++.
T Consensus       150 ~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         150 KEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999988775

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.1e-31  Score=190.63  Aligned_cols=158  Identities=35%  Similarity=0.605  Sum_probs=137.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++++|||||++++++..+...+.++.+ +.....+.+++..+.+++||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998777777765 445666778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++++|..+ ..|+..+.... .+.|+++|+||.|+...+.          +..++...+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH  148 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence            99999999998 78888877655 3699999999999965443          677788888888886 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKV  176 (211)
Q Consensus       165 ~v~~lf~~l~~~  176 (211)
                      |++++|+++.+.
T Consensus       149 ~v~~l~~~i~~~  160 (161)
T cd01861         149 NVKELFRKIASA  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=4.9e-31  Score=198.81  Aligned_cols=160  Identities=27%  Similarity=0.414  Sum_probs=135.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc-CCcEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR-GADIFVL   83 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~-~~d~~i~   83 (211)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+ +.+...+.+++..+.+.+||+||++.  .....+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 66666665 55667788888889999999999982  23344566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.+|+.+ ..|+..+....  .+.|+|+|+||+|+...+.          +..+++.+++...+. +|+++||+
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~  146 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG  146 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999998 78888887654  5899999999999976554          777888888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++.||+++|+++++.+...
T Consensus       147 ~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         147 LQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999998643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04123 Rab21 Rab21 subfamily

Probab=99.98  E-value=1.1e-30  Score=187.74  Aligned_cols=159  Identities=36%  Similarity=0.663  Sum_probs=137.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||+++++++.+...+.++... .....+.+.+..+.+.+||+||++.+...++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887766666643 34556667777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++++++.+ ..|+..+.... .+.|+++|+||+|+.....          +..++..++++..+. +++++||++++
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~  148 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK  148 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 88988887766 4789999999999875443          667777888888886 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKVV  177 (211)
Q Consensus       165 ~v~~lf~~l~~~~  177 (211)
                      |++++|+++.+.+
T Consensus       149 gi~~~~~~l~~~~  161 (162)
T cd04123         149 GIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=1.2e-30  Score=187.57  Aligned_cols=157  Identities=31%  Similarity=0.632  Sum_probs=136.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988777777776544 345667788899999999999999988888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++.+++.+ ..|+..+....  ++.|+++|+||+|+....           ...++..++++..+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR  147 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence            99999999998 77988887764  589999999999997432           567788888888876 9999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKV  176 (211)
Q Consensus       164 ~~v~~lf~~l~~~  176 (211)
                      .|++++|+++++.
T Consensus       148 ~gi~~~~~~~~~~  160 (161)
T cd01863         148 DGVQQAFEELVEK  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.98  E-value=2.8e-31  Score=195.30  Aligned_cols=163  Identities=36%  Similarity=0.639  Sum_probs=152.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ..+||+++|.+|+|||+|..+|..+.|.+.|.||.++.+.+.+.+++..+.+.|+||+|++.+..+...+++++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |++++..||+.+ ..++..+.+..  .++|+++||||+|+...+.          ++.+++..++...++ +|+|+||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999999 77777774433  5789999999999998765          999999999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      +.+++++|..|++.+-.
T Consensus       150 ~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRL  166 (196)
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998866

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=9.9e-31  Score=188.34  Aligned_cols=160  Identities=35%  Similarity=0.617  Sum_probs=141.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||++++.+..+...+.++..+.+.....+++..+.+.+||+||++.+...+..+++.++++++|||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999998888888877777778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++.++..+ ..|...+....  .+.|+++|+||+|+.....          ....+...+.+..+. +++++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence            9999999998 66766666653  5899999999999976332          566677778888876 99999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 028239          165 NVKAVFDTAIKVVL  178 (211)
Q Consensus       165 ~v~~lf~~l~~~~~  178 (211)
                      |++++|+++.+.+.
T Consensus       149 gi~~l~~~l~~~~~  162 (164)
T cd04139         149 NVEKAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.98  E-value=6.9e-31  Score=192.29  Aligned_cols=162  Identities=33%  Similarity=0.538  Sum_probs=139.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      .||+++|.+|+|||||++++.+..+...+.++....+...+.+++..+.+.+||+||++++...+..++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999999988888888877677777888888889999999999999888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      +++..+++.+ ..|...+.+..  .+.|+++|+||+|+...+.          +...+...+++..+. +++++||+++.
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (180)
T cd04137          82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE  149 (180)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999999 66655555543  5789999999999876433          566667777787776 89999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 028239          165 NVKAVFDTAIKVVLQP  180 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~  180 (211)
                      |+.++|.++.+.+...
T Consensus       150 gv~~l~~~l~~~~~~~  165 (180)
T cd04137         150 NVEEAFELLIEEIEKV  165 (180)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988644

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.97  E-value=1.3e-30  Score=186.87  Aligned_cols=158  Identities=36%  Similarity=0.676  Sum_probs=140.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|++|+|||||++++++..+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            69999999999999999999998888888888877777778888889999999999999988888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCC
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      ++++++.++ ..|...+....  ...|+++|+||+|+...+.          +..+++..++...+. +++++||+++.|
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~  148 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN  148 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence            999999998 77777776655  4899999999999987443          677888888888885 999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028239          166 VKAVFDTAIKVV  177 (211)
Q Consensus       166 v~~lf~~l~~~~  177 (211)
                      ++++|++|.+.+
T Consensus       149 i~~l~~~l~~~i  160 (160)
T cd00876         149 IDEVFKLLVREI  160 (160)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=4.6e-33  Score=185.07  Aligned_cols=163  Identities=32%  Similarity=0.608  Sum_probs=146.6

Q ss_pred             EEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239           10 VTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus        10 ~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      +++|++++|||+|+-++..+.| .....+|.+..+. +.+.++++.+++++|||+|+++|++.+..+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            4789999999999999998884 5566777776664 5678899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239           88 ISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                      .+..||++. +.|+.++.++. ..+.+.++|||+|+.+++.          +..++++.+++.++. ||.++||++|-||
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv  148 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV  148 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence            999999999 99999999887 5788899999999988776          899999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHcCCchhh
Q 028239          167 KAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       167 ~~lf~~l~~~~~~~~~~~  184 (211)
                      +..|-.|.+.+.+.....
T Consensus       149 d~af~~ia~~l~k~~~~~  166 (192)
T KOG0083|consen  149 DLAFLAIAEELKKLKMGA  166 (192)
T ss_pred             hHHHHHHHHHHHHhccCC
Confidence            999999999887654443

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=4.8e-30  Score=185.54  Aligned_cols=164  Identities=28%  Similarity=0.449  Sum_probs=129.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|.+|+|||||+++|..+.++..+..+. ..+.....+++..+.+++||+||.+.+...+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999999877655433 3334444566777899999999998887777777899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQQN  165 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~  165 (211)
                      ++++++++.+...|...+....++.|+++|+||+|+.+....        ....++...++..+.. .+++++||+++.|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN  151 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence            999999999856788888776678999999999999765420        0012333344444432 3899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 028239          166 VKAVFDTAIKVVLQ  179 (211)
Q Consensus       166 v~~lf~~l~~~~~~  179 (211)
                      ++++|+.+.+.+..
T Consensus       152 v~~lf~~~~~~~~~  165 (166)
T cd01893         152 VSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=1.1e-29  Score=184.08  Aligned_cols=165  Identities=30%  Similarity=0.567  Sum_probs=139.2

Q ss_pred             CCC-CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCC
Q 028239            1 MSA-SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA   78 (211)
Q Consensus         1 m~~-~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~   78 (211)
                      |.+ ...++|+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            553 4568999999999999999999998887776666654 34455677888888999999999999999888899999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           79 DIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      |++++|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.+.          +.......+.+.... ++++
T Consensus        81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~  148 (169)
T cd04114          81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE  148 (169)
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence            999999999999999988 78988887665 4799999999999976543          566666777776664 8999


Q ss_pred             ecCCCCCCHHHHHHHHHHHH
Q 028239          158 CSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +||++|.|++++|+++.+.+
T Consensus       149 ~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         149 TSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.4e-31  Score=176.10  Aligned_cols=170  Identities=32%  Similarity=0.581  Sum_probs=154.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      -+..+|-+++|+-|+|||+|+..|...+|..+.+.|.+..+ ...+.+.+..+++++||++|+++|+.....+++.+.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            35678999999999999999999999999999999997776 56778999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++.+.++..+ ..|+..-+... |+..++++|||.|+..++.          +..+++.+|++..+. .|+++||
T Consensus        88 lmvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sa  155 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASA  155 (215)
T ss_pred             eEEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEecc
Confidence            999999999999998 88988776665 8889999999999998876          999999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhh
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      ++|.+|++.|-+-.++++++.+..
T Consensus       156 ktg~nvedafle~akkiyqniqdg  179 (215)
T KOG0097|consen  156 KTGQNVEDAFLETAKKIYQNIQDG  179 (215)
T ss_pred             cccCcHHHHHHHHHHHHHHhhhcC
Confidence            999999999999888888765443

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.4e-30  Score=188.62  Aligned_cols=156  Identities=17%  Similarity=0.193  Sum_probs=120.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++++|||||++++..+.+.. +.+|.+..+. .+..  ..+.+++||+||+++++..+..+++.+|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            456899999999999999999999877654 4566554432 2333  34788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEEe
Q 028239           84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIEC  158 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  158 (211)
                      |||++++.++.++...|.+.+... .+++|++||+||+|+...            +..+++.++.+..    ...+++++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  150 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS  150 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence            999999999998844444444433 267999999999998653            4455555544211    11368999


Q ss_pred             cCCCCCCHHHHHHHHHH
Q 028239          159 SSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~  175 (211)
                      ||++|.|++++|++|.+
T Consensus       151 SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         151 CATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eCCCCCChHHHHHHHhc
Confidence            99999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1e-29  Score=188.86  Aligned_cols=166  Identities=26%  Similarity=0.415  Sum_probs=137.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|.+|+|||||+++|+.+.+...+.++........+.+++..+.+++||+||+..|..++..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999888888887666666778888889999999999999998888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-HhCCceEEEecCCCCC
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-QIGAAAYIECSSKTQQ  164 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~  164 (211)
                      +++.+++.+ ..|+..+....  .++|+++|+||.|+.....         .+...+..+... ..+. +++++||++|.
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~  149 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE  149 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence            999999998 78877776654  4799999999999865311         144444444443 3344 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCchhh
Q 028239          165 NVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~~~~  184 (211)
                      |++++|+++++.+.......
T Consensus       150 gv~~l~~~l~~~~~~~~~~~  169 (198)
T cd04147         150 NVLEVFKELLRQANLPYNLS  169 (198)
T ss_pred             CHHHHHHHHHHHhhcccccc
Confidence            99999999999886544433

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=6.4e-30  Score=187.21  Aligned_cols=157  Identities=17%  Similarity=0.231  Sum_probs=120.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|.++||||||++++..+.+.. +.+|.+..+. .+..+  .+.+++||+||++.++.+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            456899999999999999999999877753 5666654432 33344  4778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-------ceE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-------AAY  155 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  155 (211)
                      |||+++++++.++...+...+... .+++|++||+||+|+.+.            ...++   +.+..+.       ..+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence            999999999998843333333332 268999999999998754            22233   2233332       145


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++|+|+.++|++|.+.+..
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhh
Confidence            689999999999999999988765

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=9.5e-30  Score=184.52  Aligned_cols=157  Identities=17%  Similarity=0.245  Sum_probs=124.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|.+++|||||++++.+..+.. +.+|.+..+. .+..+  .+.+.+||+||++.+...|..+++.+|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999987654 5666554442 33344  47788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-----CceEEEecC
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-----AAAYIECSS  160 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa  160 (211)
                      ++++++.++ ..|+..+....  .+.|+++|+||+|+...            ++.+++.++++..+     ...++++||
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence            999999998 66666554332  46899999999999653            56666666654322     126889999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 028239          161 KTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++|.|++++|++|.+.+....
T Consensus       144 ~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999998876643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00154 Rab Rab family

Probab=99.97  E-value=1.7e-29  Score=180.42  Aligned_cols=157  Identities=39%  Similarity=0.759  Sum_probs=136.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|++++|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998888777765444 556677778899999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |+++++++..+ ..|+..+.... ++.|+++++||+|+.....          ...++..+++...+. +++++||+++.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~  148 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE  148 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            99999999998 77998888776 6899999999999963332          677888888888776 99999999999


Q ss_pred             CHHHHHHHHHH
Q 028239          165 NVKAVFDTAIK  175 (211)
Q Consensus       165 ~v~~lf~~l~~  175 (211)
                      |++++|+++.+
T Consensus       149 ~i~~~~~~i~~  159 (159)
T cd00154         149 NVEELFQSLAE  159 (159)
T ss_pred             CHHHHHHHHhC
Confidence            99999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.2e-29  Score=186.22  Aligned_cols=161  Identities=20%  Similarity=0.321  Sum_probs=124.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+||+++|++|+|||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++++...|..+++.+|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999999887654 45543222 233333 346688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH--hC---CceE
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ--IG---AAAY  155 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~  155 (211)
                      +|||++++.++..+ ..|+..+....  .+.|+++|+||+|+...            +..++...+...  ..   ..++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence            99999999999887 66766665433  47999999999998643            333444443321  11   1368


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++|.|++++|++|.+.+.+
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHH
Confidence            899999999999999999998853

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.9e-30  Score=187.21  Aligned_cols=152  Identities=18%  Similarity=0.246  Sum_probs=123.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI   88 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   88 (211)
                      |+++|++|+|||||+++|.+..+...+.+|.+...   ..++...+.+.+||+||++.++..|..+++++|++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            79999999999999999999988888888875432   233444588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccH----HHHHHHHHHhCCceEEEecCCC--
Q 028239           89 SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITT----AQGEELRKQIGAAAYIECSSKT--  162 (211)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~sa~~--  162 (211)
                      ++.++..+ ..|+..+....+++|+++|+||+|+...+.          +..    .++..++++.+. +++++||++  
T Consensus        79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~  146 (164)
T cd04162          79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG  146 (164)
T ss_pred             CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence            99999988 677777655447899999999999876532          221    223455555565 889988888  


Q ss_pred             ----CCCHHHHHHHHHH
Q 028239          163 ----QQNVKAVFDTAIK  175 (211)
Q Consensus       163 ----~~~v~~lf~~l~~  175 (211)
                          ++||+++|+.++.
T Consensus       147 s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         147 SPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhHHHHHHHHHHHHhc
Confidence                9999999998863

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-29  Score=185.31  Aligned_cols=161  Identities=19%  Similarity=0.227  Sum_probs=120.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++++|||||++++..+.+.. +.+|.+..+. .+...+  +.+++||+||++.++..|..+++.+|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            346899999999999999999998887764 5566654443 334443  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEEe
Q 028239           84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIEC  158 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  158 (211)
                      |||+++++++..+...+...+... ..+.|++||+||.|+.+.            ....+........    ....++++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~  158 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNWYIQGC  158 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcEEEEee
Confidence            999999999998844444443332 257899999999998653            2222221111110    11256799


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCC
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ||++|.|++++|++|.+.+.+.
T Consensus       159 Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        159 CATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999887653

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3e-29  Score=182.89  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=119.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++|+|||||++++..+.+. .+.+|.+..+. .+...  .+.+.+||+||++.+...|..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34699999999999999999999877774 35666654432 23333  4778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEEe
Q 028239           84 AFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIEC  158 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  158 (211)
                      |||+++++++.+....|...+... .+++|++||+||+|+.+..            ..++..+.....    ....++++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~  154 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNWYIQPT  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcEEEEEe
Confidence            999999999998844444443332 2579999999999986532            222222211111    11257789


Q ss_pred             cCCCCCCHHHHHHHHHHHHc
Q 028239          159 SSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ||++|.|++++|++|.+.+.
T Consensus       155 Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      155 CATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=3.1e-29  Score=180.04  Aligned_cols=153  Identities=17%  Similarity=0.218  Sum_probs=115.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|.+++|||||++++..+.+.. +.+|.+..+. .+...  .+.+.+||+||++++...|..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            589999999999999999998887764 5666654432 33343  4778899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHH-HHHHHH-H--hCCceEEEecCC
Q 028239           87 LISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ-GEELRK-Q--IGAAAYIECSSK  161 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~sa~  161 (211)
                      +++..++..+...|...+.... .+.|++|++||+|+.+.            ....+ ...+.. .  .....++++||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak  144 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNWYIQATCAT  144 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCEEEEEeeCC
Confidence            9999999998444444443322 47899999999998653            12222 222211 0  112257899999


Q ss_pred             CCCCHHHHHHHHHH
Q 028239          162 TQQNVKAVFDTAIK  175 (211)
Q Consensus       162 ~~~~v~~lf~~l~~  175 (211)
                      +|.|++++|++|.+
T Consensus       145 ~g~gv~~~~~~l~~  158 (159)
T cd04150         145 SGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.6e-28  Score=184.76  Aligned_cols=166  Identities=29%  Similarity=0.504  Sum_probs=141.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      .+...+||+++|++|+|||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+...+..++.++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            456779999999999999999999998888888888886555 3445567888999999999999999898889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +++|||+++..++..+ ..|+..+....++.|+++++||+|+.+..           +..+. ..+++..+. .|+++||
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~~-~~~~~~~~~-~~~e~Sa  150 (215)
T PTZ00132         85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKARQ-ITFHRKKNL-QYYDISA  150 (215)
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHHH-HHHHHHcCC-EEEEEeC
Confidence            9999999999999999 88988888767789999999999986432           22333 356666676 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 028239          161 KTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++|.|++++|.+|++.+....
T Consensus       151 ~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        151 KSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999987643

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=9.4e-29  Score=179.94  Aligned_cols=155  Identities=17%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ...++|+++|++|+|||||++++.+..+ ..+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4568999999999999999999998754 3445554422 23344554  778899999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIE  157 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  157 (211)
                      |||++++.++... ..|+..+...  ..+.|+++|+||+|+...            ...++..++.+..    ...++++
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHWRIQP  154 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCceEEEe
Confidence            9999999999988 5555555332  268999999999999653            2334444444321    2248999


Q ss_pred             ecCCCCCCHHHHHHHHHH
Q 028239          158 CSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~  175 (211)
                      +||++|.|++++|++++.
T Consensus       155 ~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         155 CSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             ccCCCCcCHHHHHHHHhc
Confidence            999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=8.1e-28  Score=178.12  Aligned_cols=146  Identities=22%  Similarity=0.322  Sum_probs=121.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-----CeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-----GSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +||+++|+.++|||||++++.++.+...+.+|.+..+ .+.+.++     +..+.+++||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888888886444 3444443     577999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh--------------------CCCCcEEEEeeCCCcccCccccccccCCccccH
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRF--------------------APNVPIVLVGTKLDLREDRGYLADHVGSNVITT  140 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  140 (211)
                      +|+|||+++++||+.+ ..|+..+...                    .+++|++|||||.|+.+++.          +..
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~  149 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSG  149 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cch
Confidence            9999999999999999 8999888653                    14789999999999976543          333


Q ss_pred             H----HHHHHHHHhCCceEEEecCCCCC
Q 028239          141 A----QGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus       141 ~----~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      +    ....++++.++ +.++.++.+..
T Consensus       150 ~~~~~~~~~ia~~~~~-~~i~~~c~~~~  176 (202)
T cd04102         150 NLVLTARGFVAEQGNA-EEINLNCTNGR  176 (202)
T ss_pred             HHHhhHhhhHHHhcCC-ceEEEecCCcc
Confidence            3    34567888888 88888888654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1e-27  Score=174.61  Aligned_cols=155  Identities=20%  Similarity=0.261  Sum_probs=117.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++++|||||++++..+.+.. +.+|.+..+ ..+.+++  +.+.+||+||++.+...|..+++.+|++++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            346899999999999999999999888765 455555443 2344444  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHH----HHhCCceEEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELR----KQIGAAAYIE  157 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~  157 (211)
                      |+|+++++++......+...+.... +++|+++++||+|+...            .+.++. ..+.    +..+ .++++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~-~~~~~  155 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHT-WHIQG  155 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEEe
Confidence            9999999999887334444433322 57999999999998653            222322 2221    2223 37899


Q ss_pred             ecCCCCCCHHHHHHHHHH
Q 028239          158 CSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~  175 (211)
                      +||++|.|++++|++|.+
T Consensus       156 ~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         156 CCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cccCCCCCHHHHHHHHhc
Confidence            999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=9.7e-28  Score=172.52  Aligned_cols=152  Identities=18%  Similarity=0.191  Sum_probs=114.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +|+++|++++|||||+++|.+.. +...+.+|.+.... .+...  .+.+++||+||++.+...|..+++.+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999876 45566666653322 22333  4778899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH---HHh-CCceEEEe
Q 028239           87 LISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR---KQI-GAAAYIEC  158 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~  158 (211)
                      ++++.++..+ ..|+..+....    .+.|+++|+||+|+....            ...+..+..   ... ...+++++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~  144 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS  144 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence            9999999887 66666554321    479999999999986542            112222111   101 11258999


Q ss_pred             cCCCCCCHHHHHHHHHH
Q 028239          159 SSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~  175 (211)
                      ||++|.|++++|++|.+
T Consensus       145 Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         145 NALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eCCCCCchHHHHHHHhc
Confidence            99999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=4.7e-28  Score=175.26  Aligned_cols=157  Identities=19%  Similarity=0.243  Sum_probs=118.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      +|+++|+++||||||++++.++ +...+.+|.+.. ...+..++  +.+++||+||++.++.+|..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999977 666777776544 23445554  7788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCC-
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQ-  163 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~-  163 (211)
                      ++..++.++ ..|+..+....  .+.|+++|+||.|+.......      ..+......+++++.+. .+++++||++| 
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999998 66766665432  589999999999997653100      00000111223323332 36788999998 


Q ss_pred             -----CCHHHHHHHHHH
Q 028239          164 -----QNVKAVFDTAIK  175 (211)
Q Consensus       164 -----~~v~~lf~~l~~  175 (211)
                           .|+.+.|+||..
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=2.4e-27  Score=175.05  Aligned_cols=157  Identities=19%  Similarity=0.294  Sum_probs=122.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.+...|..+++.+|++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45789999999999999999999988764 455555432 23455665  567799999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-----------  150 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (211)
                      |+|+++..++... ..|+..+....  .+.|+++++||+|+...            +..++.+++....           
T Consensus        93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  159 (190)
T cd00879          93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK  159 (190)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence            9999999999887 55555554322  57999999999998643            4556666555421           


Q ss_pred             ----CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          151 ----GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       151 ----~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                          ...+++++||++|.|++++|++|.+.+
T Consensus       160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence                123689999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.7e-27  Score=169.79  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=112.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|++++|||||++++..+.+.. +.+|.+..+. .+...  .+.+++||+||++.++..|..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998877654 3455443322 23333  36788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHH-HHH----HHhCCceEEEecCC
Q 028239           88 ISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE-ELR----KQIGAAAYIECSSK  161 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~sa~  161 (211)
                      +++.++......|...+.... ++.|+++|+||+|+....            ...+.. .+.    ...+ .+++++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~  143 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRT-WSIFKTSAI  143 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCc-EEEEEeecc
Confidence            999888776344444444322 579999999999986532            112221 111    1112 269999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028239          162 TQQNVKAVFDTAIK  175 (211)
Q Consensus       162 ~~~~v~~lf~~l~~  175 (211)
                      +|.|++++|++|++
T Consensus       144 ~~~gi~~l~~~l~~  157 (158)
T cd04151         144 KGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=7e-27  Score=170.20  Aligned_cols=160  Identities=23%  Similarity=0.342  Sum_probs=124.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ...+.+||+++|+.+||||||++++..+.+.. ..||.+... ..+.+++  +.+.+||.+|+..++..|..++.++|++
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            35788999999999999999999998876433 444544333 3455566  6677999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH--h---CCceE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ--I---GAAAY  155 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~  155 (211)
                      |||+|.++.+.+.+....+...+.... .+.|+++++||+|+.+.            .+.++.......  +   ....+
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v  153 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSV  153 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEE
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEE
Confidence            999999999999988555555555433 68999999999998764            344444443321  1   22468


Q ss_pred             EEecCCCCCCHHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +.+||.+|+|+.+.|+||.+.+
T Consensus       154 ~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  154 FSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHhcC
Confidence            8999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=7.3e-27  Score=168.84  Aligned_cols=152  Identities=20%  Similarity=0.311  Sum_probs=114.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF------PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      +|+++|++|+|||||++++.+...      ...+.+|....+ ..+.+++  ..+.+||+||++.+..++..+++.+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999986432      223334433333 2344554  6778999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh------CCc
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI------GAA  153 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  153 (211)
                      ++|+|+++++++... ..|+..+....  .+.|+++++||+|+...            ...++..++.+..      ...
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~  144 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC  144 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence            999999999888887 55555544322  58999999999998653            3334444443332      123


Q ss_pred             eEEEecCCCCCCHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +++++||++|.|+++++++|.+
T Consensus       145 ~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         145 LVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEEeeCCCCcCHHHHHHHHhc
Confidence            8999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=6.3e-27  Score=168.05  Aligned_cols=151  Identities=21%  Similarity=0.294  Sum_probs=113.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      +|+++|++|+|||||+++|.++.+... .+|.+..+ ..+... ..+.+.+||+||++.+...|..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999887644 45544333 223333 347889999999999998888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh-C-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHH------HHHHhCCceEEEec
Q 028239           88 ISRASYENVLKKWMPELRRF-A-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE------LRKQIGAAAYIECS  159 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s  159 (211)
                      +++.++..+ ..|+..+... . .+.|+++|+||+|+...            ....+...      +....+ .+++++|
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~S  143 (160)
T cd04156          78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRD-WYVQPCS  143 (160)
T ss_pred             CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCc-EEEEecc
Confidence            999998888 5555544332 2 58999999999998643            12222221      111122 3789999


Q ss_pred             CCCCCCHHHHHHHHHH
Q 028239          160 SKTQQNVKAVFDTAIK  175 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~  175 (211)
                      |++|+|++++|++|.+
T Consensus       144 a~~~~gv~~~~~~i~~  159 (160)
T cd04156         144 AVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cccCCChHHHHHHHhc
Confidence            9999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=1.3e-26  Score=170.25  Aligned_cols=156  Identities=17%  Similarity=0.229  Sum_probs=118.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|.+|+|||||++++.++.+.. +.+|.... ...+.+++  +.+.+||+||++.++..|..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            667999999999999999999999887643 33443322 22334454  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH-----------h
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ-----------I  150 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  150 (211)
                      |+|+++++++... ..++..+...  ..+.|+++|+||+|+...            ++.++..+....           .
T Consensus        91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~  157 (184)
T smart00178       91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGV  157 (184)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCC
Confidence            9999999999887 4454444332  258999999999998643            344444333211           1


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          151 GAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +...++++||+++.|++++++||..+
T Consensus       158 ~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      158 RPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ceeEEEEeecccCCChHHHHHHHHhh
Confidence            23468999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=2.3e-26  Score=178.47  Aligned_cols=148  Identities=20%  Similarity=0.328  Sum_probs=121.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-------------CeEEEEEEEeCCCCcCcc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-------------GSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~l~D~~G~~~~~   68 (211)
                      +...+||+|+|..|||||||+++|.++.+...+.+|.+..+ .+.+.++             +..+.++|||++|++.|+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            34678999999999999999999999999888888886554 3445553             356889999999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------------CCCcEEEEeeCCCcccCccccccccCC
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-------------PNVPIVLVGTKLDLREDRGYLADHVGS  135 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~  135 (211)
                      .++..++++++++|+|||+++..+|+.+ ..|++.+....             .++|++|||||+|+...+.    ....
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~  172 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGS  172 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----cccc
Confidence            9999999999999999999999999999 89999998652             2589999999999965321    0001


Q ss_pred             ccccHHHHHHHHHHhCCceE
Q 028239          136 NVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ..+..+++++|+++.+..+.
T Consensus       173 s~~~~e~a~~~A~~~g~l~~  192 (334)
T PLN00023        173 SGNLVDAARQWVEKQGLLPS  192 (334)
T ss_pred             ccccHHHHHHHHHHcCCCcc
Confidence            11467899999999886443

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2e-26  Score=165.13  Aligned_cols=151  Identities=21%  Similarity=0.261  Sum_probs=115.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|.+|+|||||++++.+..+ ..+.++.+... ..+.+.+  +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999874 34444444332 2334444  6788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH----hCCceEEEecCC
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ----IGAAAYIECSSK  161 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~sa~  161 (211)
                      ++++++... ..|+..+....  ++.|+++|+||+|+....            ..++..+....    ....+++++||+
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  143 (158)
T cd00878          77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAV  143 (158)
T ss_pred             CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence            999999988 55555544432  589999999999987642            22233222221    122489999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028239          162 TQQNVKAVFDTAIK  175 (211)
Q Consensus       162 ~~~~v~~lf~~l~~  175 (211)
                      +|.|++++|++|..
T Consensus       144 ~~~gv~~~~~~l~~  157 (158)
T cd00878         144 TGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCHHHHHHHHhh
Confidence            99999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=5.3e-26  Score=165.45  Aligned_cols=141  Identities=30%  Similarity=0.498  Sum_probs=122.9

Q ss_pred             CCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhh
Q 028239           29 NKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF  107 (211)
Q Consensus        29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (211)
                      +.|++.+.+|.+..+ ...+.+++..+.+.||||||++++..++..+++++|++|+|||++++++|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            357788888887555 56678889999999999999999999999999999999999999999999999 7898887655


Q ss_pred             C-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          108 A-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       108 ~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      . ++.|++||+||+|+...+.          +..+++..+++.++. .|+++||++|.||+++|++|++.+.+..
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            4 6789999999999976443          788888889988887 8999999999999999999999986533

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-28  Score=170.97  Aligned_cols=172  Identities=33%  Similarity=0.474  Sum_probs=155.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+|++|+|..++||||++.+++.+.|...|..|.+..+ ...+.++++.+.+.+||++|++.|+.+...++++|.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            4568999999999999999999999999999998887555 456677777788889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +||+.+|..||+.. ..|...+......+|.++|-||+|+.++..          ++..+++.+++.++. .++.+|+++
T Consensus        98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvke  165 (246)
T KOG4252|consen   98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKE  165 (246)
T ss_pred             EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhh
Confidence            99999999999999 899999998889999999999999998764          899999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCchhhHHH
Q 028239          163 QQNVKAVFDTAIKVVLQPPRRKEMM  187 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~~~~~~~~  187 (211)
                      .-||.++|..|+.++.+...+....
T Consensus       166 d~NV~~vF~YLaeK~~q~~kq~~~~  190 (246)
T KOG4252|consen  166 DFNVMHVFAYLAEKLTQQKKQSLNA  190 (246)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998766554443

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3e-25  Score=160.54  Aligned_cols=156  Identities=21%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc---------cccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP---------LSYR   76 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~---------~~~~   76 (211)
                      .+|+++|.+|+|||||+++|.+..+.. .+..++.......+..+  .+.+++|||||.........         ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987632 22222222222222233  36788999999843211000         0112


Q ss_pred             CCcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           77 GADIFVLAFSLISRASY--ENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      .+|++++|+|+++..++  ... ..|+..+....++.|+++|+||+|+.....          +..  ..++.+..+ .+
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~~--~~~~~~~~~-~~  144 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LSE--IEEEEELEG-EE  144 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HHH--HHHhhhhcc-Cc
Confidence            36899999999987653  444 567777765556899999999999975432          222  344444444 48


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ++++||++|.|++++|+++.+.++
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         145 VLKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             eEEEEecccCCHHHHHHHHHHHhC
Confidence            999999999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.3e-25  Score=164.06  Aligned_cols=154  Identities=17%  Similarity=0.199  Sum_probs=112.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce------eeee-eEE--EEE---CCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNF-SAN--VAV---DGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~l~l~D~~G~~~~~   68 (211)
                      +|+++|++++|||||+++|++..       +...+.++.      +..+ ...  ..+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       222232221      1111 111  222   5667889999999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      ..+..+++.+|++|+|||+++..++... ..|.....   .++|+++|+||+|+....            ......++++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~  145 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED  145 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence            9888899999999999999998777665 55543322   378999999999986431            1223345555


Q ss_pred             HhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          149 QIGA--AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       149 ~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ..+.  .+++++||++|.|++++|+++.+.+
T Consensus       146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            5554  2489999999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=2.9e-25  Score=158.56  Aligned_cols=151  Identities=26%  Similarity=0.353  Sum_probs=116.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      .|+++|++|+|||||++++.+..+...+.++.+..+. .+..++  +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            3899999999999999999999988888887765443 233444  7788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----HHhCCceEEEecC
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----KQIGAAAYIECSS  160 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa  160 (211)
                      ++..++... ..|+..+....  .+.|+++|+||+|+.....            ..+.....     .... .+++++||
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  143 (159)
T cd04159          78 ADRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDRE-VSCYSISC  143 (159)
T ss_pred             CCHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCc-eEEEEEEe
Confidence            999988877 44444443322  5789999999999865421            11111111     1112 37899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028239          161 KTQQNVKAVFDTAIK  175 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~  175 (211)
                      ++|.|++++|++|++
T Consensus       144 ~~~~gi~~l~~~l~~  158 (159)
T cd04159         144 KEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCChHHHHHHHhh
Confidence            999999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=3.4e-25  Score=152.41  Aligned_cols=160  Identities=17%  Similarity=0.252  Sum_probs=127.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++++++|+++|..|+||||++++|.+.. ++...||.+... ++..+++  +.+++||.+||..+++.|..||...|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            3568999999999999999999998877 344445544333 2334444  78889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHH------HHHHHHHhCCceE
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ------GEELRKQIGAAAY  155 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  155 (211)
                      +|+|.+|+..+++....+-..+.... ...|++|++||.|+...            +..++      ...++++... ++
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~------------l~~~~i~~~~~L~~l~ks~~~-~l  155 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA------------LSLEEISKALDLEELAKSHHW-RL  155 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc------------cCHHHHHHhhCHHHhccccCc-eE
Confidence            99999999999988666655555443 68999999999999843            22222      2334455565 89


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +-|||.+|+++.+-++|+...+.+
T Consensus       156 ~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  156 VKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             EEEeccccccHHHHHHHHHHHHHH
Confidence            999999999999999999998876

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=7.8e-25  Score=158.62  Aligned_cols=156  Identities=19%  Similarity=0.172  Sum_probs=109.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----cccccccc---ccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----YSRLRPLS---YRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~---~~~~d   79 (211)
                      +|+++|.+|+|||||+++|.+... ...+.++........+.+++. ..+.+|||||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997653 122222322222223333432 4678999999642    22223333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           80 IFVLAFSLISR-ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ++++|+|++++ ++++.+ ..|.+.+....   .+.|+++|+||+|+.....           .......+.......++
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~  148 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGKPV  148 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCCCE
Confidence            99999999999 788887 78888877654   3789999999999876542           23344445555323389


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++||+++.|++++|+++.+.
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         149 FPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHhh
Confidence            999999999999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=2.4e-24  Score=153.44  Aligned_cols=157  Identities=34%  Similarity=0.518  Sum_probs=123.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|.+|+|||||++++....++..+.++.. ......+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887666665554 33444567777778899999999999988888889999999999


Q ss_pred             EECCCh-hhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISR-ASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +|.... .++......|...+..... +.|+++++||+|+....           .. ..........+..+++++||++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~-~~~~~~~~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LK-THVAFLFAKLNGEPIIPLSAET  148 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hh-HHHHHHHhhccCCceEEeecCC
Confidence            999877 6777664466666665554 89999999999996642           22 3333344445555899999999


Q ss_pred             CCCHHHHHHHHH
Q 028239          163 QQNVKAVFDTAI  174 (211)
Q Consensus       163 ~~~v~~lf~~l~  174 (211)
                      +.|+.++|++|-
T Consensus       149 ~~gv~~~~~~l~  160 (161)
T TIGR00231       149 GKNIDSAFKIVE  160 (161)
T ss_pred             CCCHHHHHHHhh
Confidence            999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=1.5e-24  Score=157.58  Aligned_cols=153  Identities=21%  Similarity=0.297  Sum_probs=112.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+..++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            457899999999999999999999876532 344444222 2344555  567799999998888888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-------ceE
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-------AAY  155 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  155 (211)
                      |+|+++..++......+...+.... .++|+++++||+|+....            ..+   ++.+..+.       .++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~---~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAE---EIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHH---HHHHHcCCcccCCCeEEE
Confidence            9999999888877333333333322 479999999999986532            111   22222222       247


Q ss_pred             EEecCCCCCCHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +++||++|+|++++|++|.+
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            89999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=2.8e-25  Score=156.50  Aligned_cols=135  Identities=25%  Similarity=0.286  Sum_probs=101.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc-----CccccccccccCCcEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE-----DYSRLRPLSYRGADIFV   82 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~-----~~~~~~~~~~~~~d~~i   82 (211)
                      ||+++|++|+|||||+++|.+..+.  +.+|....      ...     .+||+||+.     .+..+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652  23332211      111     589999973     2333333 478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +|||++++.++..  ..|...+     ..|+++|+||+|+.+..           ...+++.++++..+..+++++||++
T Consensus        68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence            9999999998765  3454432     24999999999986532           4556677777777765899999999


Q ss_pred             CCCHHHHHHHHH
Q 028239          163 QQNVKAVFDTAI  174 (211)
Q Consensus       163 ~~~v~~lf~~l~  174 (211)
                      |.|++++|+++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=4.1e-24  Score=161.09  Aligned_cols=178  Identities=33%  Similarity=0.527  Sum_probs=139.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|++|+|||||+++|.+..+...+.+|.+..+... ....+..+.+.+||++|+++|+..+..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999987666544 44444478899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCC--ccccHHHHHHHHHHh---CCceEEEe
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGS--NVITTAQGEELRKQI---GAAAYIEC  158 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~  158 (211)
                      ||.++..++.++...|...+.... .+.|+++++||+|+.............  +..............   .. .++++
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  163 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLET  163 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeEe
Confidence            999997777777799999998887 479999999999998764311100000  112233333333222   33 48999


Q ss_pred             cCC--CCCCHHHHHHHHHHHHcCCchhh
Q 028239          159 SSK--TQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       159 sa~--~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      |++  ++.++.++|..+.+.+.......
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            999  99999999999999997654443

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=8.9e-24  Score=167.39  Aligned_cols=160  Identities=17%  Similarity=0.189  Sum_probs=118.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc----cccccc---cccCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY----SRLRPL---SYRGA   78 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~~~~---~~~~~   78 (211)
                      ..|+++|.|+||||||++++.+.. -...|+.|+.......+.+.+ ...+.+||+||...-    ..+...   .++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            479999999999999999999754 334566666555555555532 134679999996431    122222   45679


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           79 DIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      +++++|+|+++.+++++. ..|...+..+.   .+.|+++|+||+|+.....          +..++...+.+..+. ++
T Consensus       238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i  305 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV  305 (335)
T ss_pred             CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence            999999999988888888 88888887764   3789999999999975432          333444455555555 89


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++++|+++++++|.+.+.+
T Consensus       306 ~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        306 FLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988754

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=4.2e-24  Score=159.43  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=109.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--ccc------cc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--LRP------LS   74 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--~~~------~~   74 (211)
                      +..++|+|+|++|+|||||++++++..+. .....+..+.....+.+++. ..+.+||+||......  ...      ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            34589999999999999999999998632 22222222223333444443 2577999999733211  001      12


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      +..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.....          ..     ........ 
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~~-----~~~~~~~~-  180 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------LE-----ERLEAGRP-  180 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------HH-----HHhhcCCC-
Confidence            5689999999999999888876 67777766544 4789999999999866432          11     23333343 


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +++++||+++.|+++++++|.+.+
T Consensus       181 ~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         181 DAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHhhC
Confidence            899999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=148.58  Aligned_cols=162  Identities=18%  Similarity=0.206  Sum_probs=129.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ...++.+|+++|-.++||||++.+|..+.+... .||.+-.+. .+.+.  .+.|.+||.+|+++++..|..++++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            356789999999999999999999988887666 677655443 22333  47888999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC----ceEE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA----AAYI  156 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  156 (211)
                      |||+|.+|++.+.++...+...+.+.. .+.|+++.+||.|++..            .+..++.+.......    -.+.
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq  156 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQ  156 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEe
Confidence            999999999999999777777776655 68999999999999875            343443332222211    2577


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .++|.+|+|+.+.++|+.+.+..
T Consensus       157 ~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  157 STCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             eccccccccHHHHHHHHHHHHhc
Confidence            79999999999999999988754

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=3e-23  Score=165.32  Aligned_cols=162  Identities=17%  Similarity=0.272  Sum_probs=113.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-cccccc-----
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLRP-----   72 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~-----   72 (211)
                      |++.+.++|+++|.+|+|||||+++|++..+..  ....|+.......+..++.  .+.+|||||... +..+..     
T Consensus        47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~  124 (339)
T PRK15494         47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRC  124 (339)
T ss_pred             ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHH
Confidence            345677899999999999999999999987642  2233334444455666664  567999999843 332221     


Q ss_pred             --ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239           73 --LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI  150 (211)
Q Consensus        73 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (211)
                        ..+..+|++++|+|..+  ++......|++.+...  +.|.++|+||+|+...             ...+..+++...
T Consensus       125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~  187 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTEN  187 (339)
T ss_pred             HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhc
Confidence              23679999999999765  3444424556655544  5678899999998642             123444455444


Q ss_pred             C-CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          151 G-AAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       151 ~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      + ...++++||++|.|++++|++|.+.+....
T Consensus       188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        188 HPDSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             CCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            3 247999999999999999999999886644

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=1.8e-23  Score=150.39  Aligned_cols=153  Identities=19%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK---FPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~---~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .|+++|.+++|||||+++|.+..   ++..+.+ ++.+.....+.+.+ ...+.+|||||++++......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            58999999999999999999643   3322222 22222223344441 2568899999999887666667889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh--CCceEEEe
Q 028239           84 AFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI--GAAAYIEC  158 (211)
Q Consensus        84 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  158 (211)
                      |+|+++   .++.+.+     ..+... ...|+++++||+|+.....        ......+..+..+..  ...+++++
T Consensus        81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  146 (164)
T cd04171          81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV  146 (164)
T ss_pred             EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence            999987   3333332     122222 2349999999999975321        001223333444432  22489999


Q ss_pred             cCCCCCCHHHHHHHHHH
Q 028239          159 SSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~  175 (211)
                      ||+++.|++++|+.+.+
T Consensus       147 Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         147 SAVTGEGIEELKEYLDE  163 (164)
T ss_pred             eCCCCcCHHHHHHHHhh
Confidence            99999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=4e-23  Score=145.83  Aligned_cols=153  Identities=41%  Similarity=0.698  Sum_probs=117.1

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC
Q 028239           11 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS   89 (211)
Q Consensus        11 viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   89 (211)
                      ++|++|+|||||++++.+... .....++.................+.+||+||...+...+...++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999999887 5555555544455566666677889999999998888877888999999999999999


Q ss_pred             hhhHHHHHHHH--HHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHH
Q 028239           90 RASYENVLKKW--MPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVK  167 (211)
Q Consensus        90 ~~s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~  167 (211)
                      +.++... ..|  .........+.|+++++||+|+.....          ................+++++|+.++.|+.
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  149 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGVPYFETSAKTGENVE  149 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence            9998887 555  222223336899999999999876542          122211223333334599999999999999


Q ss_pred             HHHHHHH
Q 028239          168 AVFDTAI  174 (211)
Q Consensus       168 ~lf~~l~  174 (211)
                      +++++|.
T Consensus       150 ~~~~~l~  156 (157)
T cd00882         150 ELFEELA  156 (157)
T ss_pred             HHHHHHh
Confidence            9999886

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=3.8e-23  Score=160.41  Aligned_cols=156  Identities=16%  Similarity=0.133  Sum_probs=112.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-c-------ccccccC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-L-------RPLSYRG   77 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~-------~~~~~~~   77 (211)
                      +|+++|.+|+|||||+|+|++.++.  ....+|+..........++  ..+.+|||||...... .       ....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999998743  4445555554444433444  4577999999754321 1       2335789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      +|++++|+|+++..+..   ..+...+...  +.|+++|+||+|+....           ........+....+..++++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence            99999999999876654   3344445443  78999999999986432           22334445555555447999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +||++|.|++++++++.+.+....
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999886644

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=2.5e-24  Score=145.58  Aligned_cols=155  Identities=23%  Similarity=0.322  Sum_probs=128.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+.+.++|-.++|||||++....+.+.....||.+-...   .++...+.+.+||.||+.+|+++|+.|++.++++++|+
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            578999999999999999999988888887777765544   34445577889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-------ceEEE
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-------AAYIE  157 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  157 (211)
                      |+.+++........+.+.+.+.. .++|++|.|||.|++..-            +..   .+..+++.       +-.|.
T Consensus        97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~~---~li~rmgL~sitdREvcC~s  161 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SKI---ALIERMGLSSITDREVCCFS  161 (186)
T ss_pred             ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cHH---HHHHHhCccccccceEEEEE
Confidence            99999988888788888887766 799999999999998753            222   22333332       25789


Q ss_pred             ecCCCCCCHHHHHHHHHHHHc
Q 028239          158 CSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +||++..|++.+.+||+++--
T Consensus       162 iScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  162 ISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             EEEcCCccHHHHHHHHHHHhh
Confidence            999999999999999998753

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=8.3e-23  Score=147.63  Aligned_cols=158  Identities=16%  Similarity=0.191  Sum_probs=107.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .|+++|.+|+|||||+++|....+...+.+... ......+... +..+.+.+|||||++.+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998886654333322 2212233332 13467889999999998888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH----Hh-CCceEEEecC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK----QI-GAAAYIECSS  160 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~sa  160 (211)
                      |+++....+..  ..+..+..  .+.|+++|+||+|+......         ........+..    .. ...+++++||
T Consensus        82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEeec
Confidence            99885432221  11223333  37899999999998643210         00111111111    11 1248999999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 028239          161 KTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~  178 (211)
                      ++|.|+.++++++.+...
T Consensus       149 ~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         149 KTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1.1e-22  Score=145.53  Aligned_cols=147  Identities=17%  Similarity=0.249  Sum_probs=107.8

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------ccccc--cCCcEE
Q 028239           11 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSY--RGADIF   81 (211)
Q Consensus        11 viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~~~d~~   81 (211)
                      ++|.+|+|||||++++.+..+ ...+.+++.......+.+++  ..+.+|||||+..+...      +..++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998763 33444444444455666666  46779999999876643      34445  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ++|+|+++.++..    .+...+...  +.|+++|+||+|+.....          +. .+...+.+..+. +++++||.
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~  140 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR  140 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence            9999998865433    233333333  799999999999976432          22 234566677776 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028239          162 TQQNVKAVFDTAIKVV  177 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~  177 (211)
                      ++.|+.++++++.+.+
T Consensus       141 ~~~~~~~l~~~l~~~~  156 (158)
T cd01879         141 KGEGIDELKDAIAELA  156 (158)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=6.7e-23  Score=146.34  Aligned_cols=147  Identities=19%  Similarity=0.227  Sum_probs=106.6

Q ss_pred             EEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--------cccccccCCc
Q 028239           10 VTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--------LRPLSYRGAD   79 (211)
Q Consensus        10 ~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~~~d   79 (211)
                      +++|.+|+|||||+++|.+..  +.....++..+........++  +.+.+|||||...+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875  444555555555555555666  5577999999887554        2334578899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      ++++|+|..+..+..+.  .+...+...  +.|+++|+||+|+.....          .     .......+..+++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence            99999999876554442  233344433  699999999999876432          1     2223344544789999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 028239          160 SKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~  177 (211)
                      |+++.|++++|+++++.+
T Consensus       140 a~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         140 AEHGRGIGDLLDAILELL  157 (157)
T ss_pred             cccCCCHHHHHHHHHhhC
Confidence            999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.90  E-value=2.6e-22  Score=136.74  Aligned_cols=170  Identities=27%  Similarity=0.347  Sum_probs=143.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCcc-ccccccccCCcE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYS-RLRPLSYRGADI   80 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~   80 (211)
                      +.-||+++|..++|||+++..++-+.  ...++.+|.++.+...+..+ +..-.+.++||.|...+. .+-..++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            45799999999999999999988655  45567788888887766654 556678899999988774 455668899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      +++|||..|++||+.+ ..+...|....  ..+|++|++||+|+.++..          ++.+.++.|+++-.. ..+++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV  155 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV  155 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence            9999999999999988 66666676644  4789999999999987765          899999999999887 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      +|.+...+-+.|..+...+...+.+...
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pqskS~F  183 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQSKSTF  183 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCcccccC
Confidence            9999999999999999999887766655

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=7.1e-23  Score=170.12  Aligned_cols=163  Identities=19%  Similarity=0.184  Sum_probs=117.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----------ccccc-
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----------YSRLR-   71 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~-   71 (211)
                      ..++|+++|.+++|||||+++|++...  .....+++.+.....+.+++..+  .+|||||..+          |.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998763  45666676666666777787655  5999999632          22221 


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ..+++.+|++++|+|++++.++++.  .++..+..  .+.|+|+|+||+|+.....        ......+..+......
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence            2246899999999999999888886  34444444  3899999999999965321        0011122222222223


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ..+++++||++|.|++++|+.+.+.+....
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            358999999999999999999998875433

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=8.1e-23  Score=163.12  Aligned_cols=152  Identities=19%  Similarity=0.256  Sum_probs=110.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC---------cccccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED---------YSRLRPLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~   74 (211)
                      ..++|+++|.+|+|||||+|+|.+... .....+++.+.....+.+++. ..+.+|||||..+         |.+.+. .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-E  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-H
Confidence            458999999999999999999999763 344455555556666666322 3577999999722         222221 3


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      +.++|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.....          +     ..+. . ...
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCC
Confidence            6789999999999999887776 66666665543 4789999999999865321          1     1111 1 123


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++++||++|.|++++++.|.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            68999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=6.3e-23  Score=140.19  Aligned_cols=114  Identities=32%  Similarity=0.534  Sum_probs=86.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ||+|+|++|+|||||+++|.+..+..  ...++....+ ............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999988761  1222222222 23455666666689999999999888888889999999999


Q ss_pred             EECCChhhHHHHH--HHHHHHHhhhCCCCcEEEEeeCCC
Q 028239           85 FSLISRASYENVL--KKWMPELRRFAPNVPIVLVGTKLD  121 (211)
Q Consensus        85 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D  121 (211)
                      ||++++.+++.+.  ..|+..+....+++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            9999999999872  235666666557899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=2.9e-23  Score=154.56  Aligned_cols=157  Identities=18%  Similarity=0.141  Sum_probs=102.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------CcCcccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG-----------QEDYSRLRP   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~   72 (211)
                      ...++|+++|.+|+|||||+++|.+..+...+.+... .....+...    .+.+|||||           ++.++..+.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            3568999999999999999999998876543333221 112222222    477999999           344555444


Q ss_pred             ccc----cCCcEEEEEEECCChhhHHH---------HHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc
Q 028239           73 LSY----RGADIFVLAFSLISRASYEN---------VLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT  139 (211)
Q Consensus        73 ~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  139 (211)
                      .++    ..++++++|+|.++...+.+         ....+...+..  .++|+++|+||+|+....             
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------  146 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------  146 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence            444    34578888888765332210         00122233332  379999999999986531             


Q ss_pred             HHHHHHHHHHhCC--------ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          140 TAQGEELRKQIGA--------AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       140 ~~~~~~~~~~~~~--------~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .+...++.+..+.        .+++++||++| |++++|++|.+.+....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            2334455555553        15899999999 99999999999875433

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=2.2e-22  Score=164.96  Aligned_cols=150  Identities=21%  Similarity=0.263  Sum_probs=116.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~   74 (211)
                      ..++|+++|++|+|||||+|+|++..  +...+++|+.+.....+.+++..  +.+|||||...+...+        ..+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999874  56777888877777778888744  5699999987655432        246


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++++|||++++.++++.   |+..+..  .+.|+++|+||+|+....                ...+++..+. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~~----------------~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKINS----------------LEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCcc----------------hhhhhhhcCC-c
Confidence            7899999999999998887653   5554433  378999999999985421                1234455555 7


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++++||++ .||+++|+.+.+.+.+
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHH
Confidence            89999997 6999999999888754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=2.4e-22  Score=159.09  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc----cccccc---ccCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS----RLRPLS---YRGA   78 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~---~~~~   78 (211)
                      ..|+++|.|+||||||++++.... -...|+.|+.......+.+++ ...+.+||+||.....    .+...+   +..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            479999999999999999999865 334555555444444455544 2456799999974322    222233   4569


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           79 DIFVLAFSLISR---ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        79 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      +++++|+|+++.   +.++++ ..|.+.+..+.   .+.|+++|+||+|+....           ...+..+.+.+..+.
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~~  304 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALGK  304 (329)
T ss_pred             CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcCC
Confidence            999999999976   567776 77777776553   478999999999996543           223445556666665


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                       +++++||++++|++++++++.+.+
T Consensus       305 -~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       305 -PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             -cEEEEEccCCcCHHHHHHHHHHHh
Confidence             899999999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=4.4e-22  Score=142.04  Aligned_cols=145  Identities=23%  Similarity=0.312  Sum_probs=107.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------cccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSYR   76 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~   76 (211)
                      ++|+++|++|+|||||++++.+...  .....++........+..++  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            5899999999999999999998763  33444444444444555555  55779999998665432        123567


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|++++|+|++++.+..+. ..+..     ..+.|+++|+||+|+.....          .       ...... .+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~-~~~~  135 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAG-KPII  135 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCC-CceE
Confidence            89999999999998877775 33332     34799999999999976542          1       222333 4899


Q ss_pred             EecCCCCCCHHHHHHHHHHHH
Q 028239          157 ECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ++||+++.|+++++++|.+.+
T Consensus       136 ~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         136 AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHHHhh
Confidence            999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.89  E-value=2.2e-22  Score=149.01  Aligned_cols=147  Identities=14%  Similarity=0.062  Sum_probs=99.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cceeee-eeEEEEECCeEEEEEEEeCCCCcCccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLR   71 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~   71 (211)
                      -+|+++|.+++|||||+++|+.  +.+...+.            .+.+.. ......++...+.+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  44544321            111111 12223333445778899999999999999


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-  150 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (211)
                      ..+++.+|++++|||+++.. +... ..++..+..  .++|+++|+||+|+...+.         ....++..++...+ 
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~  149 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG  149 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            99999999999999998743 2222 333333333  3789999999999965321         01233444444322 


Q ss_pred             ------CCceEEEecCCCCCCHH
Q 028239          151 ------GAAAYIECSSKTQQNVK  167 (211)
Q Consensus       151 ------~~~~~~~~sa~~~~~v~  167 (211)
                            +. +++++||++|.|+.
T Consensus       150 ~~~~~~~~-~iv~~Sa~~g~~~~  171 (194)
T cd01891         150 ATEEQLDF-PVLYASAKNGWASL  171 (194)
T ss_pred             CccccCcc-CEEEeehhcccccc
Confidence                  44 89999999997663

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.9e-22  Score=167.63  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=111.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--------cccccccc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--------SRLRPLSY   75 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~   75 (211)
                      ..+|+|+|.+|+|||||+++|++...  .....+++.+.....+.+++.  .+.+|||||.+..        ...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            46899999999999999999998763  344444455555566667774  4669999997632        22334467


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      +.+|++|+|+|+++..++.+  ..+...+...  +.|+++|+||+|+....             .+....+.  .+....
T Consensus       116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~~--~g~~~~  176 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALWS--LGLGEP  176 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHHh--cCCCCe
Confidence            89999999999999877654  4555666543  89999999999986421             11222222  233245


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++|.|++++|+++++.+.+
T Consensus       177 ~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        177 HPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEEEcCCCCCcHHHHHHHHhhccc
Confidence            799999999999999999998855

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=2.5e-22  Score=146.16  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=105.0

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcC----cccccc---ccccCCcEE
Q 028239           11 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQED----YSRLRP---LSYRGADIF   81 (211)
Q Consensus        11 viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~----~~~~~~---~~~~~~d~~   81 (211)
                      ++|++|+|||||+++|.+... ...+.+++.......+.++ +  ..+.+||+||...    ...++.   ..++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999999864 3344444433333444555 5  4567999999732    222222   236789999


Q ss_pred             EEEEECCCh------hhHHHHHHHHHHHHhhhC--------CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239           82 VLAFSLISR------ASYENVLKKWMPELRRFA--------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR  147 (211)
Q Consensus        82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      ++|+|+++.      .++.+. ..|...+....        .+.|+++|+||+|+.....          ..........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~  147 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA  147 (176)
T ss_pred             EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence            999999988      467666 56666665432        3799999999999976432          2222122333


Q ss_pred             HHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          148 KQIGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       148 ~~~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .... .+++++||+++.|++++++++.+.
T Consensus       148 ~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEG-AEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence            3333 479999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2.7e-22  Score=165.25  Aligned_cols=148  Identities=22%  Similarity=0.290  Sum_probs=114.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------cccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~   74 (211)
                      ..++|+++|.+|+|||||+|+|++..  +...+.+++.+.....+.+++.  .+.+|||||.+.+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            34899999999999999999999876  4566777777777777777774  5679999998765432        1235


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      +.++|++++|+|++++.++++. ..|..     ..+.|+++|+||+|+.....          ..        ...+ .+
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~-~~  346 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENG-KP  346 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccC-Cc
Confidence            7889999999999998887765 44433     34789999999999965432          11        2223 37


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++++||++|.|++++++++.+.+..
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999998754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=9.9e-22  Score=162.12  Aligned_cols=159  Identities=22%  Similarity=0.245  Sum_probs=116.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-----------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR-----------   71 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-----------   71 (211)
                      ..++|+++|.+++|||||+++|++..  ......+|+.+.....+..++.  .+.+|||||..++....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            45899999999999999999999875  4456666766666666666765  46699999986655432           


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHH--
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRK--  148 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~--  148 (211)
                      ...++.+|++++|+|++++.+.++.  .+...+...  +.|+++|+||+|+....           ...++. ..+..  
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~  313 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL  313 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence            1257889999999999998887775  344444433  79999999999997221           111222 12222  


Q ss_pred             -HhCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          149 -QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       149 -~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                       ..+..+++++||++|.|++++|+++.+.+...
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             22335899999999999999999999877543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.89  E-value=2.7e-22  Score=141.40  Aligned_cols=147  Identities=20%  Similarity=0.279  Sum_probs=107.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------cccc--ccC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLS--YRG   77 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~--~~~   77 (211)
                      |+|+++|.|++|||||+|+|++.. ....+++++.+.....+.+.+..  +.++|+||-..+...      ...+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            689999999999999999999987 44567788877777888888844  559999996443321      1223  268


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      .|++++|.|+++.+.-.    .+..++.+.  ++|+++|+||+|+.....          +. .....+.+.++. |++.
T Consensus        79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~  140 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP  140 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred             CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence            99999999998754322    333444444  899999999999877653          22 235677788887 9999


Q ss_pred             ecCCCCCCHHHHHHHH
Q 028239          158 CSSKTQQNVKAVFDTA  173 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l  173 (211)
                      +||++++|++++++.|
T Consensus       141 ~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EBTTTTBTHHHHHHHH
T ss_pred             EEeCCCcCHHHHHhhC
Confidence            9999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=6.7e-22  Score=145.43  Aligned_cols=157  Identities=17%  Similarity=0.080  Sum_probs=110.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----------------eeeeeEEEEECCeEEEEEEEeCCCCcCcccc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----------------FDNFSANVAVDGSIVNLGLWDTAGQEDYSRL   70 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~   70 (211)
                      +|+++|.+|+|||||+++|.+.........+.                 .......+...  ...+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            58999999999999999999877554332211                 11111222333  356789999999988888


Q ss_pred             ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239           71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI  150 (211)
Q Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (211)
                      +..+++.+|++++|+|++++.+....  .++..+..  .+.|+++|+||+|+.....        ......+..+..+..
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~  146 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI  146 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence            88889999999999999887655443  34344443  4899999999999975321        001123333333332


Q ss_pred             -------------CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          151 -------------GAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       151 -------------~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                                   ...+++++||++|.|++++|+++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                         2358999999999999999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04163 Era Era subfamily

Probab=99.89  E-value=9.4e-22  Score=141.41  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------ccccc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSY   75 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~   75 (211)
                      ..+|+++|++|+|||||++++.+..+...  ...+.........  ....+.+.+||+||.......        ....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            57899999999999999999998764222  2222222222222  222356779999997554322        23347


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ..+|++++|+|++++.+...  ..+...+...  +.|+++|+||+|+.....          ........+....+..++
T Consensus        81 ~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~  146 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI  146 (168)
T ss_pred             HhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence            88999999999998732222  3444444443  689999999999974321          223334445555544589


Q ss_pred             EEecCCCCCCHHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +++|++++.|++++++.|.+.+
T Consensus       147 ~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         147 FPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             EEEEeccCCChHHHHHHHHhhC
Confidence            9999999999999999997753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=7.4e-22  Score=167.12  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=116.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce------eeee-eEE--EEE---CCeEEEEEEEeCCCCcCc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNF-SAN--VAV---DGSIVNLGLWDTAGQEDY   67 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~l~l~D~~G~~~~   67 (211)
                      -+|+++|++++|||||+++|+...       +...+..+.      +..+ ...  +.+   ++..+.++||||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999998742       222232221      1112 111  222   466789999999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239           68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR  147 (211)
Q Consensus        68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      ...+..+++.+|++++|+|+++..+.+.. ..|...+.   .+.|+++|+||+|+....            ......++.
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el~  147 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEIE  147 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHHH
Confidence            99889999999999999999998777776 55554443   278999999999986431            122234455


Q ss_pred             HHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          148 KQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       148 ~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      +.++.  ..++++||++|.|++++|++|.+.+...
T Consensus       148 ~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       148 EVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             HHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            55554  2489999999999999999999987654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=3.6e-21  Score=139.38  Aligned_cols=155  Identities=23%  Similarity=0.271  Sum_probs=106.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-----------cc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-----------RP   72 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----------~~   72 (211)
                      .++|+++|.+|+|||||++++++...  .....++........+..++..  +.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            58999999999999999999998753  2333444444444455566644  569999997543211           01


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH-HHHHHHHhC
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ-GEELRKQIG  151 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  151 (211)
                      ..++.+|++++|+|++++.+....  .+...+...  +.|+++++||+|+.....          ..... ...+.+..+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  145 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP  145 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence            245789999999999998776654  333333332  789999999999876531          11222 222333332


Q ss_pred             ---CceEEEecCCCCCCHHHHHHHHHHH
Q 028239          152 ---AAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       152 ---~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                         ..+++++||+++.|++++++.+.+.
T Consensus       146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         146 FLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence               3589999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=2.8e-21  Score=162.91  Aligned_cols=154  Identities=18%  Similarity=0.232  Sum_probs=109.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+..+|+++|++++|||||+++|.+..+...+.+.. .......+.+++. ..+.||||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            356899999999999999999999887766543322 2222234444432 15779999999999999988899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-------C-Cce
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-------G-AAA  154 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~  154 (211)
                      +|+|+++...-+.. ..+ .....  .++|+++++||+|+....             .++..+.....       + ..+
T Consensus       164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~  226 (587)
T TIGR00487       164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI  226 (587)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence            99999875433332 222 22222  379999999999986421             22222222222       2 137


Q ss_pred             EEEecCCCCCCHHHHHHHHHH
Q 028239          155 YIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      ++++||++|.|++++|+++..
T Consensus       227 ~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       227 FVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEEECCCCCChHHHHHhhhh
Confidence            999999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.5e-21  Score=139.87  Aligned_cols=141  Identities=18%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----cccccCCcEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----PLSYRGADIFVL   83 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----~~~~~~~d~~i~   83 (211)
                      +|+++|.+++|||||++++.+.....  ..+.      .+.+...    .+||+||.......+    ...+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccce------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999988654211  1111      1222222    279999973322211    123689999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~  162 (211)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+.+             ...+...++++..+. .|++++||++
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence            999998877643   233222   23679999999999854             234556677777764 4899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      |+|++++|+.+.+.+.+
T Consensus       132 g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             ccCHHHHHHHHHHhchh
Confidence            99999999999877644

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=2.6e-21  Score=144.01  Aligned_cols=118  Identities=14%  Similarity=0.182  Sum_probs=90.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCC-cEEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA-DIFVLAFS   86 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~d   86 (211)
                      +|+++|++++|||+|+++|....+...+.++............+..+.+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999998877765553322222222223446788999999999988888888998 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccC
Q 028239           87 LISR-ASYENVLKKWMPELRRF---APNVPIVLVGTKLDLRED  125 (211)
Q Consensus        87 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~  125 (211)
                      +++. .++.++...|++.+...   .+++|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9987 67777745555555432   268999999999998654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.87  E-value=2e-21  Score=132.76  Aligned_cols=170  Identities=25%  Similarity=0.514  Sum_probs=141.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .-.+||.++|++..|||||+-.+.++.+.+.+..+.+..+ .+++.+.+..+.+.+||..|++++..+.+....++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            3568999999999999999999999998887777776554 678999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCC-CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |+||++.+.++..+ ..|+.+-+.... -+| |+||+|.|+.-.-.+     +.++-...+++.+++-+++ +.+++|+.
T Consensus        98 FmFDLt~r~TLnSi-~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~-----e~Q~~I~~qar~YAk~mnA-sL~F~Sts  169 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSI-KEWYRQARGLNKTAIP-ILVGTKYDLFIDLPP-----ELQETISRQARKYAKVMNA-SLFFCSTS  169 (205)
T ss_pred             EEEecCchHHHHHH-HHHHHHHhccCCccce-EEeccchHhhhcCCH-----HHHHHHHHHHHHHHHHhCC-cEEEeecc
Confidence            99999999999999 899888776542 345 778999997543210     0011233456788888898 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 028239          162 TQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +..||..+|..+..++..-.
T Consensus       170 ~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             ccccHHHHHHHHHHHHhCCc
Confidence            99999999999999887644

>cd01889 SelB_euk SelB subfamily

Probab=99.87  E-value=1.3e-21  Score=144.61  Aligned_cols=162  Identities=14%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC----CCCCC----CCCceeeeeeEEEEEC------------CeEEEEEEEeCCCCcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN----KFPTD----YIPTVFDNFSANVAVD------------GSIVNLGLWDTAGQED   66 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~----~~~~~----~~~t~~~~~~~~~~~~------------~~~~~l~l~D~~G~~~   66 (211)
                      ++|+++|++++|||||+++|+..    .+...    ..+++.......+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    12111    1122211111122222            3357788999999865


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      +..........+|++++|+|+++....... ..+. ....  .+.|+++++||+|+.....        .....++..+.
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~  148 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEE--------RERKIEKMKKK  148 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            433333345678999999999886554443 2222 1122  2679999999999864321        00112222221


Q ss_pred             -HHH-----hCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          147 -RKQ-----IGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       147 -~~~-----~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                       ...     ....+++++||++|.|++++++++..++.-+
T Consensus       149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence             111     1224899999999999999999999988653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=6.9e-21  Score=149.53  Aligned_cols=161  Identities=22%  Similarity=0.244  Sum_probs=111.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--------ccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--------LRPLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~   74 (211)
                      +.-.|+++|.+|+|||||+|+|++..+.  ...+.|...........++  ..+.+|||||......        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4567999999999999999999988743  2333343333333333333  6677999999654321        22235


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      +..+|++++|+|+++..+-..  ..+...+..  .+.|+++|+||+|+.....          ........+.+..+..+
T Consensus        82 ~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence            678999999999988432222  333444443  2689999999999974322          23445556666566568


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++++||+++.|++++++++.+.+....
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999886543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.1e-20  Score=153.42  Aligned_cols=157  Identities=20%  Similarity=0.236  Sum_probs=113.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc----cccccc---ccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS----RLRPLS---YRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~---~~~~d   79 (211)
                      .|+++|.|+||||||++++.+.+. ...++.|+.......+.+++ ...+.+||+||.....    .+...+   +..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            899999999999999999998652 23455555444444444441 2457799999964321    222333   45699


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           80 IFVLAFSLISR---ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      ++++|+|+++.   +.+++. ..|.+.+..+.   .+.|++||+||+|+...              .+...++.+.++. 
T Consensus       239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~-  302 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP-  302 (424)
T ss_pred             EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC-
Confidence            99999999865   566666 67777777654   37899999999998432              2334556666664 


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +++++||+++.|++++++++.+.+...+
T Consensus       303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        303 KVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            8999999999999999999998886544

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.4e-21  Score=158.49  Aligned_cols=150  Identities=20%  Similarity=0.235  Sum_probs=109.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--------ccccccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--------SRLRPLSYR   76 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~   76 (211)
                      ++|+++|.+|+|||||+++|.+..  +...+.+++.+.....+.+++  ..+.+|||||.+..        ......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999876  355566666666666667777  66789999998762        122344678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+....              ....++ ...+...++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~  140 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY  140 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence            99999999999886554432  233344443  79999999999964421              122222 344553589


Q ss_pred             EecCCCCCCHHHHHHHHHHHH
Q 028239          157 ECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ++||++|.|++++|+.+.+..
T Consensus       141 ~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        141 PISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEeeCCCCHHHHHHHHHhhC
Confidence            999999999999999998843

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=6.2e-21  Score=144.66  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=123.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--------ccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--------LRP   72 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~   72 (211)
                      ..+.--|+++|.|++|||||+|++++.+  +...-..|+.......+..++  .++.++||||--.-..        ...
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            4456789999999999999999999988  455566667777777776665  5566999999533221        223


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      ..+..+|+++||+|++....-.+  +..++.+..  .+.|+++++||.|...+..          ........+......
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f  146 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPF  146 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCc
Confidence            35789999999999988544433  455555555  2789999999999877642          224455555566666


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCCchh
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~  183 (211)
                      ...+++||++|.|++.|.+.+..++.+...-
T Consensus       147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~  177 (298)
T COG1159         147 KEIVPISALKGDNVDTLLEIIKEYLPEGPWY  177 (298)
T ss_pred             ceEEEeeccccCCHHHHHHHHHHhCCCCCCc
Confidence            6899999999999999999999998776543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=7.8e-21  Score=140.82  Aligned_cols=161  Identities=17%  Similarity=0.082  Sum_probs=103.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----------cccccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----------YSRLRP   72 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~   72 (211)
                      ....++|+++|.+|+|||||++++++..+...+.++.+.........  ....+.|||+||...          +.....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            44568999999999999999999999765444444433222211111  125688999999532          222223


Q ss_pred             cccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           73 LSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        73 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      .+++   .++++++|+|.+++.+..+.  .+...+...  +.|+++++||+|+.....        .....++..++...
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~  166 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF  166 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence            3333   34678889998876544432  222333333  789999999999865321        00112223344444


Q ss_pred             hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          150 IGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ... +++++||+++.|++++++.|.+.+.
T Consensus       167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        167 GDD-EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            344 8999999999999999999987764

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=1.1e-20  Score=154.21  Aligned_cols=156  Identities=18%  Similarity=0.180  Sum_probs=109.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--cccccc------cccC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--SRLRPL------SYRG   77 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--~~~~~~------~~~~   77 (211)
                      ++|+++|.+|+|||||+|+|.+... ..+..+++.+.....+...+. ..+.+|||||..+.  ...+..      .+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            6899999999999999999998763 334445554445455555542 14569999997432  222222      3578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      +|++++|+|++++.++..+ ..|...+.... .+.|+++|+||+|+.....           ....    ....+...++
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~~----~~~~~~~~~v  340 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRID----RDEENKPIRV  340 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHHH----HHhcCCCceE
Confidence            9999999999999887776 55555555443 4799999999999864311           1111    1123332358


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .+||++|.|++++++++.+.+..
T Consensus       341 ~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999998854

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=5.3e-21  Score=163.62  Aligned_cols=157  Identities=17%  Similarity=0.230  Sum_probs=111.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-e--eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-F--DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      .+...|+|+|++++|||||+++|....+.....+.. .  ..+...+..++..+.+.||||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            356799999999999999999999877654333222 1  1222233334445788899999999999999989999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH-------HHHhC-C
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL-------RKQIG-A  152 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~  152 (211)
                      +++|+|+++....+.. ..| ..+..  .++|+||++||+|+....             .++..+.       ....+ .
T Consensus       322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~  384 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGD  384 (742)
T ss_pred             EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCC
Confidence            9999999885433332 222 22222  379999999999986532             1111111       22223 2


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      .+++++||++|.|++++|+++....
T Consensus       385 vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        385 TPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ceEEEEECCCCCCHHHHHHhhhhhh
Confidence            4899999999999999999998764

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.4e-20  Score=126.45  Aligned_cols=159  Identities=18%  Similarity=0.192  Sum_probs=125.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .++++|+++|-.++||||++..|..+.... ..||.+-.+. .+++  +.+.|++||.+|++..+..|.+++....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnve-tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEE-EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            468999999999999999999998876533 3455443332 2333  44888999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC----ceEEEe
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIEC  158 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  158 (211)
                      |+|..+.+..+++...++..+.+.. .+.|++|.+||.|+++..            ...++..+.+.-.+    --...+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W~vqp~  158 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNWYVQPS  158 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCccEeecc
Confidence            9999999999998888888887665 689999999999999874            44555444332211    135679


Q ss_pred             cCCCCCCHHHHHHHHHHHHc
Q 028239          159 SSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ||.+|+|+.+-|.|+...+.
T Consensus       159 ~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  159 CALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ccccchhHHHHHHHHHhhcc
Confidence            99999999999999987653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=6.1e-21  Score=157.44  Aligned_cols=151  Identities=19%  Similarity=0.276  Sum_probs=112.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC--------ccccccccccC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED--------YSRLRPLSYRG   77 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~   77 (211)
                      +|+++|.+|+|||||+|+|.+..  +...+.+++.+.....+..++.  .+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999876  3455666666666666677774  477999999643        22334456789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      +|++++|+|..++.+..+  ..+...+++.  +.|+++|+||+|+.....           .   ..+ ...++..++++
T Consensus        79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~~--~~piilVvNK~D~~~~~~-----------~---~~~-~~~lg~~~~~~  139 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED--EEIAKWLRKS--GKPVILVANKIDGKKEDA-----------V---AAE-FYSLGFGEPIP  139 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHHh--CCCEEEEEECccCCcccc-----------c---HHH-HHhcCCCCeEE
Confidence            999999999988655554  2344455544  789999999999865431           1   111 34556657999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcC
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +||++|.|+.++++.+.+.+..
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCc
Confidence            9999999999999999988755

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.2e-20  Score=161.20  Aligned_cols=159  Identities=16%  Similarity=0.221  Sum_probs=110.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+...|+|+|+.++|||||+++|....+.....+.. .......+.+++  ..+.||||||++.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            467899999999999999999998877655433322 222223455555  56779999999999999998899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH--HHHHHHHhC-CceEEEec
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ--GEELRKQIG-AAAYIECS  159 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~s  159 (211)
                      +|||+++...-+.. ..| .....  .++|+||++||+|+.....        ..+..+.  ...++..++ ..+++++|
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvS  433 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVS  433 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEe
Confidence            99999885332222 222 22222  3799999999999965321        0011110  111223333 24899999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 028239          160 SKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~  176 (211)
                      |++|.|++++|++|...
T Consensus       434 AktG~GI~eLle~I~~~  450 (787)
T PRK05306        434 AKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCCchHHHHhhhhh
Confidence            99999999999998763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=5.4e-21  Score=139.82  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=98.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCCcC----------ccc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED----------YSR   69 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~l~D~~G~~~----------~~~   69 (211)
                      |++.+.++|+++|.+|+|||||++++++..+...+.++.+..... .+..++   .+.+||+||...          +..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            456788999999999999999999999886433333333222211 122232   477999999532          222


Q ss_pred             ccccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           70 LRPLSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        70 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      +...+++   .++++++|+|++++.+..+.  .+...+...  +.|+++++||+|+.....        .....++.++.
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~  157 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA  157 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            2223343   46899999999887665554  333444443  789999999999865321        00223444445


Q ss_pred             HHHhCC-ceEEEecCCCCCCHH
Q 028239          147 RKQIGA-AAYIECSSKTQQNVK  167 (211)
Q Consensus       147 ~~~~~~-~~~~~~sa~~~~~v~  167 (211)
                      ....+. .+++++||++|+|++
T Consensus       158 l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       158 LKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HhhccCCCceEEEECCCCCCCC
Confidence            554432 379999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.2e-20  Score=154.32  Aligned_cols=161  Identities=18%  Similarity=0.185  Sum_probs=113.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-----------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR-----------   71 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-----------   71 (211)
                      ..++|+++|.+++|||||+++|++..  ......+++.+.....+..++..  +.+|||||........           
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46899999999999999999999765  44556666666665556666644  5599999975433221           


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ...++.+|++++|+|++++.+.++.  .+...+...  +.|+++|+||+|+.+...       .. ....+.........
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~-------~~-~~~~~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT-------ME-EFKKELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH-------HH-HHHHHHHHhccccc
Confidence            1256789999999999998887774  344444433  789999999999874321       00 01111111112223


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ..+++++||++|.|++++|+.+.+....
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            3589999999999999999999886643

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.86  E-value=1.7e-20  Score=138.26  Aligned_cols=161  Identities=22%  Similarity=0.264  Sum_probs=108.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------C------CceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-------------I------PTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-------------~------~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      +.++|+++|+.++|||||+++|+...-....             .      ..........+..+.....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999999999999864421110             0      00001111222211334667799999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      .|.......+..+|++|+|+|+.++...+.  ...+..+...  ++|+++|+||+|+...+-        ..+..+....
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~--------~~~~~~~~~~  149 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL--------EEIIEEIKEK  149 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH--------HHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH--------HHHHHHHHHH
Confidence            888877777899999999999998766555  3444455555  789999999999973221        0011111223


Q ss_pred             HHHHhC-----CceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          146 LRKQIG-----AAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       146 ~~~~~~-----~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +.+.++     ..+++.+||.+|.|+++|++.+.+.+
T Consensus       150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             hccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            444442     34899999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.2e-21  Score=135.43  Aligned_cols=162  Identities=29%  Similarity=0.455  Sum_probs=138.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .++++++|..|.|||+++++.+.+.|...+.+|.+......+...+ ..+.+..|||+|++.+......++-++.+.|++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            6899999999999999999999999999999999877766554443 359999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ||++..-++.++ ..|...+.....++|++++|||.|.....            .......+.+..+. .|+++||+.+.
T Consensus        90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~  155 (216)
T KOG0096|consen   90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNY  155 (216)
T ss_pred             eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeeccccc
Confidence            999999999999 99999998888899999999999987653            11222334445555 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCc
Q 028239          165 NVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~  181 (211)
                      |.+.-|.|+.+++....
T Consensus       156 NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  156 NFERPFLWLARKLTGDP  172 (216)
T ss_pred             ccccchHHHhhhhcCCC
Confidence            99999999999987654

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=2.9e-20  Score=152.83  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=110.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc----cc---ccccccCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS----RL---RPLSYRGA   78 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~---~~~~~~~~   78 (211)
                      .+|+|+|.|+||||||+++|.+... ...|+.|+.......+.+.+  ..+.+||+||.....    .+   .-..+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            4899999999999999999998652 34566666555555666666  457799999963211    11   11235679


Q ss_pred             cEEEEEEECCCh----hhHHHHHHHHHHHHhhhC------------CCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239           79 DIFVLAFSLISR----ASYENVLKKWMPELRRFA------------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ  142 (211)
Q Consensus        79 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (211)
                      |++++|+|+++.    +.+.+. ..|...+..+.            .+.|+|||+||+|+.+...          +. +.
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l~-e~  305 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------LA-EF  305 (500)
T ss_pred             CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------HH-HH
Confidence            999999999753    234443 44444443322            3689999999999975432          21 22


Q ss_pred             HHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          143 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       143 ~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ........+. +++++||+++.|+++++.+|.+.+...+
T Consensus       306 l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        306 VRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            2223334455 8999999999999999999999886543

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.85  E-value=1.5e-20  Score=140.06  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=78.7

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH  132 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  132 (211)
                      ..+.|||+||++.|...+...+..+|++++|+|++++. .-+.. ..+ ..+... ...|+++|+||+|+.....     
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~-~~l-~~~~~~-~~~~iiivvNK~Dl~~~~~-----  154 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS-EHL-AALEIM-GLKHIIIVQNKIDLVKEEQ-----  154 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH-HHH-HHHHHc-CCCcEEEEEEchhccCHHH-----
Confidence            56889999999988877777788999999999998742 11111 222 222222 2357999999999865321     


Q ss_pred             cCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          133 VGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                         .....++.+++.+.+  ...+++++||++|+|++++|+++.+.+..+
T Consensus       155 ---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         155 ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             ---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence               001123334444433  124799999999999999999999877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=1.2e-20  Score=163.53  Aligned_cols=157  Identities=20%  Similarity=0.193  Sum_probs=115.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc-cccc----------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY-SRLR----------   71 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~~~~----------   71 (211)
                      ..++|+++|.+|+|||||+++|++..  ++..+.+|+.+.....+.+++..+  .+|||||..+- ...+          
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~--~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDW--LFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEE--EEEECCCcccCcccchhHHHHHHHHH
Confidence            45899999999999999999999986  456677777777766777787654  49999996421 1111          


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHHH-
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRKQ-  149 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-  149 (211)
                      ...++.+|++++|+|+++..+.++. . +...+...  +.|+++|+||+|+.+...            .+.. ..+... 
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~~--~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l  590 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVDA--GRALVLVFNKWDLMDEFR------------RQRLERLWKTEF  590 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHHc--CCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence            1236889999999999999888876 3 33444433  799999999999965321            1111 112222 


Q ss_pred             --hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          150 --IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       150 --~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                        ....+++.+||++|.|++++|+.+.+.+..
T Consensus       591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence              233477999999999999999999998865

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.84  E-value=5.2e-20  Score=155.79  Aligned_cols=156  Identities=20%  Similarity=0.171  Sum_probs=111.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPT-VFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.|+++|++++|||||+++|.+..   ++.++... +.+.....+..++  +.+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999643   33332222 2222233455555  67889999999999887777889999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC---CceE
Q 028239           83 LAFSLISR---ASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG---AAAY  155 (211)
Q Consensus        83 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  155 (211)
                      +|+|+++.   ++++.+     ..+...  ++| +++|+||+|+.+...        .....++..++.+..+   ..++
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~i  143 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKI  143 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcE
Confidence            99999884   444333     223332  677 999999999976432        0012344556666553   2489


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++|.|++++++.+...+..
T Consensus       144 i~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       144 FKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEEeCCCCCCchhHHHHHHHHHHh
Confidence            999999999999999998877644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=6e-20  Score=155.69  Aligned_cols=161  Identities=17%  Similarity=0.198  Sum_probs=114.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCC-----CCCCce------eeee-eEE--EEE---CCeEEEEEEEeCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DYIPTV------FDNF-SAN--VAV---DGSIVNLGLWDTAGQ   64 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~~~~t~------~~~~-~~~--~~~---~~~~~~l~l~D~~G~   64 (211)
                      ++.-+|+++|+.++|||||+.+|+...  +..     .+..+.      +..+ ...  +.+   ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            344589999999999999999998632  211     111111      1111 111  111   455788999999999


Q ss_pred             cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239           65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE  144 (211)
Q Consensus        65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      .+|...+..+++.+|++|+|+|+++....+.. ..|.....   .+.|+++|+||+|+....            ......
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~~v~~  148 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PERVKQ  148 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HHHHHH
Confidence            99998888899999999999999987766665 45544332   378999999999986532            112223


Q ss_pred             HHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          145 ELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       145 ~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++.+.++.  ..++.+||++|.|+++++++|.+.+..+
T Consensus       149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            44444444  2489999999999999999999987654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=9.1e-20  Score=147.27  Aligned_cols=160  Identities=17%  Similarity=0.182  Sum_probs=115.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----c---ccccccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----L---RPLSYRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~---~~~~~~~~d   79 (211)
                      .|+|+|.|+||||||+|+|.+.+ ....++.|+.......+...+. ..+.++|+||...-.+    +   .-..+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            79999999999999999999865 3445666666666556665532 3466999999643211    1   112467899


Q ss_pred             EEEEEEECC---ChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-
Q 028239           80 IFVLAFSLI---SRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-  152 (211)
Q Consensus        80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (211)
                      ++++|+|++   +.+.+++. ..|...+....   .+.|+++|+||+|+.....          + .+...++.+..+. 
T Consensus       240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----------l-~~~l~~l~~~~~~~  307 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----------A-EERAKAIVEALGWE  307 (390)
T ss_pred             EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----------H-HHHHHHHHHHhCCC
Confidence            999999988   44556665 67777776653   4789999999999865432          2 2334445555442 


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      .+++.+||+++.|++++++.|.+.+.+.
T Consensus       308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        308 GPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            2689999999999999999999988654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=9.4e-20  Score=158.08  Aligned_cols=154  Identities=20%  Similarity=0.198  Sum_probs=108.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc--------cccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS--------RLRPLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~   74 (211)
                      ...+|+++|.+++|||||+|+|++..  .....++++.+........++  ..+.+|||||.+...        .....+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            34689999999999999999999875  344555555555555555666  456799999976421        222345


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++++|+|+++.....+  ..|...++..  +.|+++|+||+|+....             ......+.  .+...
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-------------~~~~~~~~--lg~~~  412 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-------------YDAAEFWK--LGLGE  412 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-------------hhHHHHHH--cCCCC
Confidence            789999999999987543333  3555666544  89999999999985421             11122222  23324


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .+++||++|.||.++|+++++.+..
T Consensus       413 ~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        413 PYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             eEEEECCCCCCchHHHHHHHHhccc
Confidence            5789999999999999999998854

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=7e-23  Score=143.93  Aligned_cols=169  Identities=28%  Similarity=0.455  Sum_probs=143.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ..-++++|+|.-++|||+++.++++..+...|..|.+..+. +....+ ...+.+++||.+|+++|..+...+++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            44579999999999999999999999999999988876664 344444 4557889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--C---CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA--P---NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      ++|||++...+|+.. ..|.+.+....  |   ..|+++..||||+...-.         .-......++.+..+....+
T Consensus       103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwt  172 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWT  172 (229)
T ss_pred             EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCcccee
Confidence            999999999999999 89998887655  2   467789999999876532         11236677888999988999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCch
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ++|++.+.++.|+-..+++.++.+..
T Consensus       173 ets~Kenkni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  173 ETSAKENKNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             eeccccccChhHHHHHHHHHHHhhcc
Confidence            99999999999999999999987653

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.2e-21  Score=133.13  Aligned_cols=165  Identities=21%  Similarity=0.269  Sum_probs=124.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC-------CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN-------KFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL   73 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~   73 (211)
                      |.....+.|+++|..++|||||+.++...       ..+....+|.+-.. .++.+++  ..+.+||..|++..+++|..
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~~--~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVCN--APLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeecc--ceeEEEEcCChHHHHHHHHH
Confidence            34456789999999999999999876532       12334444444333 2334444  45669999999999999999


Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH---HHH
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL---RKQ  149 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~  149 (211)
                      ++..+|++|+++|+++++.|++....+...+.+.. .+.|+++.+||.|+.+..            ...+....   +..
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~  156 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAEL  156 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhh
Confidence            99999999999999999999988555555555444 799999999999987753            33333332   233


Q ss_pred             hCC--ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          150 IGA--AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       150 ~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      .+.  .++..+||.+|+||++...|+++.+.++
T Consensus       157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            322  4799999999999999999999999776

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=3.1e-19  Score=135.44  Aligned_cols=149  Identities=19%  Similarity=0.207  Sum_probs=103.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-------cccccccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-------LRPLSYRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d   79 (211)
                      +|+++|++|+|||||+++|.+.. ....+..++.+.....+.+++  ..+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            79999999999999999999876 344555555555556666776  5677999999754331       1224688999


Q ss_pred             EEEEEEECCChhh-HHHHHHHHHH-----------------------------------------HHhh-----------
Q 028239           80 IFVLAFSLISRAS-YENVLKKWMP-----------------------------------------ELRR-----------  106 (211)
Q Consensus        80 ~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~~~-----------  106 (211)
                      ++++|+|+++.+. ...+ ...+.                                         .+.+           
T Consensus        80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987653 2222 11111                                         1111           


Q ss_pred             --------------hCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q 028239          107 --------------FAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT  172 (211)
Q Consensus       107 --------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~  172 (211)
                                    ....+|+++|+||+|+..               .++...+++.   .+++++||+++.|++++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~  220 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER  220 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence                          112368999999999853               2333344443   26899999999999999999


Q ss_pred             HHHHH
Q 028239          173 AIKVV  177 (211)
Q Consensus       173 l~~~~  177 (211)
                      +.+.+
T Consensus       221 i~~~L  225 (233)
T cd01896         221 IWDKL  225 (233)
T ss_pred             HHHHh
Confidence            98865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=1e-19  Score=154.20  Aligned_cols=145  Identities=16%  Similarity=0.263  Sum_probs=107.8

Q ss_pred             CCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------ccccc--cCCcEEEE
Q 028239           13 GDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSY--RGADIFVL   83 (211)
Q Consensus        13 G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~~~d~~i~   83 (211)
                      |.+|+|||||+|++.+... ..++++++.+.....+.+++.  .+++||+||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998774 445556665555566667764  4679999999887653      22222  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+|+++.+...    .+...+.+.  +.|+++|+||+|+.+.+.          +. .+.+++.+..+. +++++||++|
T Consensus        79 VvDat~ler~l----~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg  140 (591)
T TIGR00437        79 VVDASNLERNL----YLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG  140 (591)
T ss_pred             EecCCcchhhH----HHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence            99998754321    222233333  799999999999865432          22 345777888886 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      +|++++++.+.+..
T Consensus       141 ~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       141 RGIERLKDAIRKAI  154 (591)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=4.9e-20  Score=147.08  Aligned_cols=151  Identities=18%  Similarity=0.203  Sum_probs=120.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc--c-------cccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS--R-------LRPLSY   75 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--~-------~~~~~~   75 (211)
                      ..|+++|-||+|||||.|||.+.+  +..++++++.+.........+..  |.++||+|.+...  .       .....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            679999999999999999999987  78899999999998888888855  6699999976433  1       123357


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ..||++|||+|.....+-.+  ....+.++..  +.|+++|+||+|-...               ++...-.-+++.-..
T Consensus        82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~~--~kpviLvvNK~D~~~~---------------e~~~~efyslG~g~~  142 (444)
T COG1160          82 EEADVILFVVDGREGITPAD--EEIAKILRRS--KKPVILVVNKIDNLKA---------------EELAYEFYSLGFGEP  142 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEEcccCchh---------------hhhHHHHHhcCCCCc
Confidence            89999999999988766665  4555666643  7999999999996532               222222345555589


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHc
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +.+||.+|.|+.+|.+.+++.+.
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC
Confidence            99999999999999999999984

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.83  E-value=1e-19  Score=149.79  Aligned_cols=159  Identities=13%  Similarity=0.081  Sum_probs=103.2

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVA   48 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~   48 (211)
                      |++..+++|+++|++++|||||+++|+...  +...                              ..+++.+.....+.
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~   80 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE   80 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence            788999999999999999999999998432  1110                              11222222222233


Q ss_pred             ECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           49 VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS--RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                      .  ..+.+.+|||||++.|.......+..+|++++|+|+++  ...-+.  ..+...+... ...|+++++||+|+....
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~--~~~~~~~~~~-~~~~iivviNK~Dl~~~~  155 (425)
T PRK12317         81 T--DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT--REHVFLARTL-GINQLIVAINKMDAVNYD  155 (425)
T ss_pred             c--CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch--HHHHHHHHHc-CCCeEEEEEEcccccccc
Confidence            3  34678899999998887655556789999999999987  322222  1222222222 234699999999997521


Q ss_pred             cccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHHH
Q 028239          127 GYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~lf  170 (211)
                      ..      ......++..++.+..+.    .+++++||++|+|+++++
T Consensus       156 ~~------~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        156 EK------RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HH------HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            10      000123455556655553    479999999999998754

>cd00880 Era_like Era (E

Probab=99.83  E-value=1.1e-19  Score=129.44  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=103.6

Q ss_pred             EECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc-------ccccCCcEE
Q 028239           11 TVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP-------LSYRGADIF   81 (211)
Q Consensus        11 viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~-------~~~~~~d~~   81 (211)
                      ++|++|+|||||++++.+....  ....++............. ...+.+||+||...+.....       ..++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987543  2233333333333333331 35677999999877654433       367899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH--HHHHHHHhCCceEEEec
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ--GEELRKQIGAAAYIECS  159 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s  159 (211)
                      ++|+|.++..+.... . +......  .+.|+++|+||+|+.....          .....  ...........+++++|
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence            999999998877775 3 3333332  4899999999999876432          11110  11222233335899999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 028239          160 SKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~  176 (211)
                      |.++.|+.++++++.+.
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=4.3e-19  Score=125.21  Aligned_cols=158  Identities=18%  Similarity=0.215  Sum_probs=119.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCC--------CCCC---ce-eeeeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPT--------DYIP---TV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~--------~~~~---t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      ..-...||+|.|+.++||||+++.+.......        .+..   |+ ...+- .+.+++ ...+.++|||||++|+-
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g-~~~~~~-~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG-SIELDE-DTGVHLFGTPGQERFKF   83 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc-ceEEcC-cceEEEecCCCcHHHHH
Confidence            34567899999999999999999998876411        1111   11 11111 122222 24566999999999999


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      +|+..++.+.++++++|.+.+..+. . ...++.+....+ +|++|++||.|+.+.            .+.+.++++...
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~~-a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~  148 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITFH-A-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKL  148 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcchH-H-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHh
Confidence            9999999999999999999998883 3 566666665532 999999999999986            456676666666


Q ss_pred             hC-CceEEEecCCCCCCHHHHHHHHHHH
Q 028239          150 IG-AAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       150 ~~-~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .. ..+.++.+|.+++++.+.++.+...
T Consensus       149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         149 ELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccCCCceeeeecccchhHHHHHHHHHhh
Confidence            52 3499999999999999999888876

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.83  E-value=5e-20  Score=127.14  Aligned_cols=136  Identities=19%  Similarity=0.232  Sum_probs=100.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC----cCccccccccccCCcEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ----EDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~----~~~~~~~~~~~~~~d~~i~   83 (211)
                      ||+++|+.|+|||||+++|.+....-  .-|.      .+.+.+     .++||||.    ..|.+.......+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQ------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCc--Cccc------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            79999999999999999999876422  2221      111221     26999994    2233323334568999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |.|++++.+.-.  ..+...+     +.|+|-|+||+|+..+.           ...+.+.++.+.-|...+|++|+.+|
T Consensus        70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            999999765433  2333333     68999999999998433           46678888999999988999999999


Q ss_pred             CCHHHHHHHHH
Q 028239          164 QNVKAVFDTAI  174 (211)
Q Consensus       164 ~~v~~lf~~l~  174 (211)
                      +|+++|.++|-
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=2.1e-19  Score=151.49  Aligned_cols=166  Identities=17%  Similarity=0.131  Sum_probs=104.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----eeeeeeEEEEEC-------------CeEEEEEEEeCCCCcCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVAVD-------------GSIVNLGLWDTAGQEDY   67 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~-------------~~~~~l~l~D~~G~~~~   67 (211)
                      +..-|+++|++++|||||+++|.+..+.....+.    .+..+.......             .....+.||||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            4567999999999999999999988765443331    122111110000             01123789999999999


Q ss_pred             cccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-----ccc--cCCcc
Q 028239           68 SRLRPLSYRGADIFVLAFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-----ADH--VGSNV  137 (211)
Q Consensus        68 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~--~~~~~  137 (211)
                      ..++..+++.+|++++|+|+++   +.+++.+     ..+...  +.|+++++||+|+.......     .+.  .....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9998889999999999999987   4444443     223332  78999999999986421100     000  00000


Q ss_pred             cc-------HHHHHHHH-------------HHhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          138 IT-------TAQGEELR-------------KQIGAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       138 ~~-------~~~~~~~~-------------~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +.       .....++.             ...+..+++++||++|+|+++++.++....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            00       00001111             111235899999999999999999887653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.82  E-value=8.1e-19  Score=152.08  Aligned_cols=152  Identities=14%  Similarity=0.164  Sum_probs=113.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc----------cc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP----------LS   74 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~----------~~   74 (211)
                      .++|+++|.+|+|||||+|++.+.. ...++.+++.+.....+..++  ..+.+||+||..++.....          .+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            5789999999999999999999865 344555655555555555555  5567999999887654211          12


Q ss_pred             --ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           75 --YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        75 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                        ...+|++++|+|+++.+...    .+...+.+.  +.|+++++||+|+.+.+.          + ....+++.+.++.
T Consensus        81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~  143 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC  143 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC
Confidence              24799999999998865432    233444444  799999999999875432          3 3456777888887


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                       +++++||.+++|++++++.+.+..
T Consensus       144 -pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        144 -PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             -CEEEEEeecCCCHHHHHHHHHHhh
Confidence             999999999999999999998765

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=8.4e-19  Score=140.06  Aligned_cols=161  Identities=20%  Similarity=0.219  Sum_probs=125.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc----------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP----------   72 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~----------   72 (211)
                      ..+||+++|-|++|||||+|++++..  +.....+|+.+.....+.+++..+.  ++||+|-.+-....+          
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence            46999999999999999999999876  7888899999999999999997666  999999544322221          


Q ss_pred             -ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH----HHHHH
Q 028239           73 -LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ----GEELR  147 (211)
Q Consensus        73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~  147 (211)
                       ..+..+|.+++|+|++.+.+-++.  .....+.+.  +.++++|+||.|+.+...          ...++    .....
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l  320 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL  320 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence             245789999999999999888884  555666555  899999999999877532          22222    33334


Q ss_pred             HHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          148 KQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       148 ~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ...+..+.+.+||+++.++.++|+.+.+......
T Consensus       321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             ccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence            4445579999999999999999999888775543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4.3e-19  Score=142.08  Aligned_cols=152  Identities=22%  Similarity=0.273  Sum_probs=118.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc--------cc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL--------SY   75 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~--------~~   75 (211)
                      -++++++|.||+|||||+|.|++..  ++.+.++|+++.....+.++|  +.+.+.||+|-.......+.        .+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            4799999999999999999999876  889999999999999999999  55669999998765543322        46


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      .+||.+++|+|.+.+.+-.+.  ..+.   ....+.|+++|.||.|+.....            ..   .. +.....++
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~------------~~---~~-~~~~~~~~  353 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE------------LE---SE-KLANGDAI  353 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc------------cc---hh-hccCCCce
Confidence            789999999999997444443  2222   2234799999999999987532            11   11 11122268


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      +.+|++++.|++.+.+.|.+.+...
T Consensus       354 i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         354 ISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEEEecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999999999988776

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.81  E-value=3.2e-19  Score=120.18  Aligned_cols=155  Identities=20%  Similarity=0.257  Sum_probs=119.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|-.++|||||++.|.+.... ...+|.+-... .+.++ .++.+++||.+|+...+..|..++.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k-~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTK-KVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceE-EEeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            57899999999999999999999876643 33444443333 33333 34889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-------CceE
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-------AAAY  155 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  155 (211)
                      |+|.+|...|+++-..+.+.+.... ...|+.+..||.|+...-.            .+   +.+.+.+       ..++
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------------~e---eia~klnl~~lrdRswhI  156 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------------VE---EIALKLNLAGLRDRSWHI  156 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------------hH---HHHHhcchhhhhhceEEe
Confidence            9999999999998777777776554 7899999999999865421            11   2222221       2378


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      -++||..++|+..-.+|+...
T Consensus       157 q~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  157 QECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             eeCccccccCccCcchhhhcC
Confidence            889999999998888877654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=4.9e-19  Score=145.70  Aligned_cols=159  Identities=15%  Similarity=0.077  Sum_probs=102.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEEEEC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------------------YIPTVFDNFSANVAVD   50 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~   50 (211)
                      +...++|+++|++++|||||+++|+..  .+...                              ..+.+.+.....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            456789999999999999999999852  22110                              0011111122223333


Q ss_pred             CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239           51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENV-LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL  129 (211)
Q Consensus        51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  129 (211)
                        .+.+.|||+||++.|.......+..+|++++|+|+++.+++... ...+.. +.......|++||+||+|+.+.... 
T Consensus        84 --~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~~~~-  159 (426)
T TIGR00483        84 --KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNYDEE-  159 (426)
T ss_pred             --CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCccHH-
Confidence              36788999999998876666667899999999999988543211 011111 2222234679999999999642110 


Q ss_pred             ccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHHH
Q 028239          130 ADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~lf  170 (211)
                           .......+..++++..+.    .+++++||++|.|+.+++
T Consensus       160 -----~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       160 -----EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence                 001223556667776653    489999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=3e-18  Score=144.93  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=112.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Ccee-eeeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS--NKFPTDYI------------PTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      ..-+|+++|+.++|||||+++|+.  +.+.....            .+.+ +.......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            346899999999999999999997  33433211            0111 11223333444457888999999999999


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      .+..+++.+|++++|+|+++....+.. ..| ..+...  ++|.++++||+|+...+.         .-..++...+...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l-~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~  150 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVT-KKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN  150 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH-HHH-HHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence            999999999999999999886544443 333 333333  789999999999875431         0111223333222


Q ss_pred             hC------CceEEEecCCCCC----------CHHHHHHHHHHHHcCCc
Q 028239          150 IG------AAAYIECSSKTQQ----------NVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       150 ~~------~~~~~~~sa~~~~----------~v~~lf~~l~~~~~~~~  181 (211)
                      .+      ..|++.+||.+|.          ++..|++.++..+..+.
T Consensus       151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            11      1479999999998          68999999998886553

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=1.5e-18  Score=146.84  Aligned_cols=160  Identities=15%  Similarity=0.149  Sum_probs=109.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCCCCCc---------e---eee-eeEEEEECCeEEEEEEEeCCCCcCcccccc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN--KFPTDYIPT---------V---FDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRP   72 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t---------~---~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~   72 (211)
                      +|+++|+.++|||||+++|+..  .+.......         .   +.. ......+....+.+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  232211000         0   111 112222222337788999999999998888


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-  151 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (211)
                      .+++.+|++++|+|+.+...-+.  ..|+..+...  ++|+++|+||+|+...+.         .....+...+...++ 
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~  149 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA  149 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence            89999999999999987543333  4555555544  789999999999865321         011233333332211 


Q ss_pred             -----CceEEEecCCCCC----------CHHHHHHHHHHHHcCC
Q 028239          152 -----AAAYIECSSKTQQ----------NVKAVFDTAIKVVLQP  180 (211)
Q Consensus       152 -----~~~~~~~sa~~~~----------~v~~lf~~l~~~~~~~  180 (211)
                           ..+++.+||++|.          |+..+|+.+++.+...
T Consensus       150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence                 1389999999995          7999999999988655

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=5.9e-18  Score=143.16  Aligned_cols=166  Identities=17%  Similarity=0.181  Sum_probs=103.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----eeeeeeEEEEE---CCeEE----------EEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVAV---DGSIV----------NLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~---~~~~~----------~l~l~D~~G~~~   66 (211)
                      .++.-|+++|++++|||||+++|.+..+.....+.    .+..+......   .+..+          .+.||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            46678999999999999999999877654443322    12111110000   01111          167999999999


Q ss_pred             ccccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc-----cccccCC--c
Q 028239           67 YSRLRPLSYRGADIFVLAFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY-----LADHVGS--N  136 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~~~--~  136 (211)
                      |..++...+..+|++++|+|+++   +++++.+ .    .+..  .++|+++++||+|+...-..     .......  .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888899999999999987   5555544 2    2222  37999999999998521100     0000000  0


Q ss_pred             cccH------HHHHHHHHH--------------hCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          137 VITT------AQGEELRKQ--------------IGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       137 ~~~~------~~~~~~~~~--------------~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .+..      .+.......              .+..+++++||.+|.|++++++.+...
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence            0000      000011111              123589999999999999999887643

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=4.2e-18  Score=129.44  Aligned_cols=167  Identities=14%  Similarity=0.067  Sum_probs=107.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--------CCCCCCce--------eeee-eEEEEECCeEEEEEEEeCCCCcCcccc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF--------PTDYIPTV--------FDNF-SANVAVDGSIVNLGLWDTAGQEDYSRL   70 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~--------~~~~~~t~--------~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~   70 (211)
                      +|+++|++|+|||||+++|+...-        ......+.        +... .....+....+.+.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986321        11000000        0011 111222223367889999999999888


Q ss_pred             ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc----------------cc---
Q 028239           71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL----------------AD---  131 (211)
Q Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~---  131 (211)
                      +..+++.+|++++|+|+++......  ..+...+...  +.|+++++||+|+.......                +.   
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~  156 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL  156 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence            8889999999999999998765443  4555555544  79999999999986421100                00   


Q ss_pred             ------c----------------------cCCccccHHHHHHHH----HHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          132 ------H----------------------VGSNVITTAQGEELR----KQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       132 ------~----------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                            .                      .+-..++.++...-.    ..-...|.+..||.++.|+..|++.+.+.+-
T Consensus       157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                  0                      001123333322211    1223468888999999999999999998764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.78  E-value=4.8e-18  Score=125.42  Aligned_cols=148  Identities=19%  Similarity=0.163  Sum_probs=95.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--------CCCC---------CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK--------FPTD---------YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~--------~~~~---------~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      +++|+++|++++|||||+++|+...        ....         ..++....  ....+......+.++||||+..|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence            5899999999999999999998641        0000         11111111  112222233566799999998877


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR  147 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      ......+..+|++++|+|+.....-+.  ...+..+...  +.| +|+++||+|+.....       ......+++..+.
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l  148 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELL  148 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHH
Confidence            766667889999999999987644333  2333444443  566 789999999864221       0011223455555


Q ss_pred             HHhCC----ceEEEecCCCCCCH
Q 028239          148 KQIGA----AAYIECSSKTQQNV  166 (211)
Q Consensus       148 ~~~~~----~~~~~~sa~~~~~v  166 (211)
                      ...+.    .+++.+||++|.|+
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            55543    58999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=1.9e-18  Score=129.67  Aligned_cols=112  Identities=20%  Similarity=0.217  Sum_probs=79.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-----------CCCce------eeee-e--EEEEE---CCeEEEEEEEeCCCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTD-----------YIPTV------FDNF-S--ANVAV---DGSIVNLGLWDTAGQ   64 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~-----------~~~t~------~~~~-~--~~~~~---~~~~~~l~l~D~~G~   64 (211)
                      +|+++|++++|||||+++|+.......           +..+.      +..+ .  ..+..   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999987543221           11111      0111 0  11111   355688999999999


Q ss_pred             cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ..|...+..++..+|++++|+|+++..+...  ..++......  +.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence            9998877888999999999999988776654  3444443332  68999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.4e-19  Score=119.85  Aligned_cols=159  Identities=15%  Similarity=0.162  Sum_probs=119.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ++..+|+++|-.|+|||++.-++.-+..... .||.+....   .+..++..+++||..|+...+..|.-++.+.|++|+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            4789999999999999999988877665443 333332222   222355889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHH-----HHHHHhCCceEEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE-----ELRKQIGAAAYIE  157 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  157 (211)
                      |+|.+|.+........++..+.+.. .+..++|++||.|....            ....|+.     +-.++.- ..+++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~------------~t~~E~~~~L~l~~Lk~r~-~~Iv~  158 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA------------LTRSEVLKMLGLQKLKDRI-WQIVK  158 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh------------hhHHHHHHHhChHHHhhhe-eEEEe
Confidence            9999998877766556666666544 56778899999997653            2333322     1222222 48999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcC
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +||.+|+|+++..+|+.+-+.+
T Consensus       159 tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  159 TSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             eccccccCCcHHHHHHHHHHhc
Confidence            9999999999999999988754

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.78  E-value=4.2e-18  Score=122.60  Aligned_cols=154  Identities=17%  Similarity=0.052  Sum_probs=95.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCc----------cccccccc-
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDY----------SRLRPLSY-   75 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~~~~~-   75 (211)
                      .|+++|++|+|||||++.+.++.+.....++..... ...+..++   .+.+||+||....          ......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996554444444432222 22223333   6779999995432          22222233 


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-HhCC
Q 028239           76 --RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-QIGA  152 (211)
Q Consensus        76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (211)
                        ...+++++++|.+...+...  ......+...  +.|+++++||+|+.....        ............+ ....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~  145 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID  145 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence              34678899999876643222  1222333333  689999999999854321        0011112222222 2333


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHH
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .+++++||+++.++.+++++|.+.
T Consensus       146 ~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         146 PPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CceEEEecCCCCCHHHHHHHHHHh
Confidence            589999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.77  E-value=8e-18  Score=143.07  Aligned_cols=158  Identities=18%  Similarity=0.171  Sum_probs=102.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCC-CCceeeeeeEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK---FPTDY-IPTVFDNFSANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~---~~~~~-~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      -|.++|++++|||||+++|.+..   ++.+. .+.+.+.....+.. ++  ..+.+||+||+++|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            47899999999999999998643   22221 12221111112222 33  34679999999998776666788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC--ceEEEec
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA--AAYIECS  159 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s  159 (211)
                      +|+|+++...-+..  ..+..+...  ++| ++||+||+|+.+...        .....++..++....+.  .+++++|
T Consensus        80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VS  147 (614)
T PRK10512         80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTA  147 (614)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence            99999874322221  222333333  455 579999999875321        00112344455554442  4899999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|.|++++++.|.+....
T Consensus       148 A~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        148 ATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCCCHHHHHHHHHhhcc
Confidence            99999999999999876543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.77  E-value=3.1e-18  Score=139.90  Aligned_cols=163  Identities=16%  Similarity=0.093  Sum_probs=103.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----e-eee-----------------eeEEEEECC------eEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-----V-FDN-----------------FSANVAVDG------SIV   54 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t-----~-~~~-----------------~~~~~~~~~------~~~   54 (211)
                      ...++|+++|++++|||||+++|.+... +.+...     + ...                 +......++      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            5679999999999999999999965321 111000     0 000                 000000011      135


Q ss_pred             EEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        55 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      .+.+||+||+++|...+......+|++++|+|++++. .-+.. +.+ ..+... ...|+++++||+|+.+...      
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l-~~l~~~-gi~~iIVvvNK~Dl~~~~~------  151 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHL-MALEII-GIKNIVIVQNKIDLVSKEK------  151 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHH-HHHHHc-CCCeEEEEEEccccCCHHH------
Confidence            6889999999999887777778899999999998643 22221 222 223222 2356899999999875321      


Q ss_pred             CCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          134 GSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                        .....++..++....  ...+++++||++|+|+++++++|...+.
T Consensus       152 --~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       152 --ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             --HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence              001123334444433  1248999999999999999999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.77  E-value=3.6e-18  Score=127.75  Aligned_cols=151  Identities=17%  Similarity=0.107  Sum_probs=93.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEEECCeEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVAVDGSIVN   55 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~   55 (211)
                      ||+++|++++|||||+++|+...  ....                              ..+++.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            68999999999999999997532  2100                              01111111122233344  45


Q ss_pred             EEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCC
Q 028239           56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGS  135 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  135 (211)
                      +.+|||||+++|...+...++.+|++++|+|++++..-+..  .....+... ...++|+|+||+|+......      .
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~  149 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------V  149 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------H
Confidence            66999999988766556678899999999999876432221  222222222 23457889999998642210      0


Q ss_pred             ccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHH
Q 028239          136 NVITTAQGEELRKQIGA--AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~l  169 (211)
                      ......+..++.+.++.  .+++.+||++|.|+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            00112344555666663  35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.77  E-value=2.1e-17  Score=124.48  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=97.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-----------------------eeee----------------EEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-----------------------DNFS----------------ANVA   48 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-----------------------~~~~----------------~~~~   48 (211)
                      ||+++|+.++|||||+++|..+.+.+.......                       ....                ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997655331110000                       0000                0111


Q ss_pred             ECCeEEEEEEEeCCCCcCccccccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           49 VDGSIVNLGLWDTAGQEDYSRLRPLSY--RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                      ..  ...+.++|+||+++|.......+  ..+|++++|+|++....-.+  ..++..+...  ++|+++|+||+|+.+..
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence            22  25677999999988865444334  36899999999987655443  3455555554  78999999999986432


Q ss_pred             cccccccCCccccHHHHHHHHHH-------------------------hCCceEEEecCCCCCCHHHHHHHHHH
Q 028239          127 GYLADHVGSNVITTAQGEELRKQ-------------------------IGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      ..        .....+..++.+.                         ....|+|.+||.+|+|++++...|..
T Consensus       155 ~~--------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 IL--------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HH--------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            10        0111112222221                         11348999999999999999887753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.77  E-value=5.8e-18  Score=128.36  Aligned_cols=172  Identities=15%  Similarity=0.173  Sum_probs=109.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc------------c
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS------------R   69 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------------~   69 (211)
                      ++.+.|+|+|.|++|||||.|.+.+.+.....  ..|+.-.....+.-+.  .++.|+||||--.-.            .
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhh
Confidence            57899999999999999999999999854433  3333444444444455  566699999932111            1


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc---cCCccccHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH---VGSNVITTAQGEEL  146 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~  146 (211)
                      .....+..||.+++|+|+++....-.  ...+..+..+ .++|-++|+||.|...+.....+.   ..-..++. ...++
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~kl~v  223 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-LKLEV  223 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccch-hhhhH
Confidence            12234678999999999997433222  3344444433 378999999999976554322110   00011110 11122


Q ss_pred             HHHhCC----------------ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          147 RKQIGA----------------AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       147 ~~~~~~----------------~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .++...                ..+|.+||++|+||+++-++|+..+....
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            222222                23799999999999999999998886543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.76  E-value=7.8e-18  Score=137.51  Aligned_cols=166  Identities=16%  Similarity=0.105  Sum_probs=103.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cce-eeee-----------------eEEEEEC--C----e
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PTV-FDNF-----------------SANVAVD--G----S   52 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----~t~-~~~~-----------------~~~~~~~--~----~   52 (211)
                      .+..+++|+++|+.++|||||+.+|.+.. .+...     +.+ ...+                 ......+  +    .
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            35678999999999999999999996531 11111     111 1000                 0000001  0    1


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD  131 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  131 (211)
                      ...+.|||+||++.|..........+|++++|+|++++. .-+.. ..+ ..+... ...|+++|+||+|+.+...    
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~----  156 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHL-MALDII-GIKNIVIVQNKIDLVSKER----  156 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHc-CCCcEEEEEEeeccccchh----
Confidence            257889999999888765555566789999999998643 22221 222 222222 2346899999999975421    


Q ss_pred             ccCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          132 HVGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                          .....++...+.+..  ...+++++||++|.|++++++.|...+..
T Consensus       157 ----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        157 ----ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ----HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence                001123344444432  12489999999999999999999887643

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.75  E-value=2.9e-18  Score=139.62  Aligned_cols=164  Identities=25%  Similarity=0.392  Sum_probs=123.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +.+||+++|+.|+||||||..+....|++..++-.. ......+..++  +...++|++..+.-+.....-++.||++.+
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            568999999999999999999999998776554442 22222233333  446699998766555444556889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHH-HHHHHHHh-CCceEEEe
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ-GEELRKQI-GAAAYIEC  158 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~  158 (211)
                      ||+.+++.+++.+..+|+..+++..   .++|+|+||||+|......          .+.+. ..-+...+ .+...++|
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtciec  155 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIEC  155 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHhh
Confidence            9999999999999999999999988   7999999999999877653          11111 11222222 11256899


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCC
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ||++..++.++|..-.++++.+
T Consensus       156 SA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  156 SALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhhHhhhhhhhheeecc
Confidence            9999999999999888887654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=1.1e-17  Score=125.70  Aligned_cols=168  Identities=16%  Similarity=0.220  Sum_probs=102.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCcccc-----ccccccCCcEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRL-----RPLSYRGADIF   81 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----~~~~~~~~d~~   81 (211)
                      ||+++|+.++||||+.+.++++..+.+......+. ....-......+.+++||+||+..+...     ....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            79999999999999999999987655543222111 1111111222367889999999765433     35578999999


Q ss_pred             EEEEECCChhhHHHHHHHHHH---HHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC--CceEE
Q 028239           82 VLAFSLISRASYENVLKKWMP---ELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG--AAAYI  156 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  156 (211)
                      |+|+|+.+.+-.+++ ..+..   .+.+..|++.+-|.++|+|+..+....    .......+...+.+...+  ...++
T Consensus        81 IyV~D~qs~~~~~~l-~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~~~  155 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDL-AYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDITFF  155 (232)
T ss_dssp             EEEEETT-STCHHHH-HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred             EEEEEcccccHHHHH-HHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceEEE
Confidence            999999855544444 44444   444556899999999999986532100    000011122233334444  24788


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .||.-+ +.+.++|..+++.++.+.
T Consensus       156 ~TSI~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  156 LTSIWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             EE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred             eccCcC-cHHHHHHHHHHHHHcccH
Confidence            888886 689999999999988643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.75  E-value=3.4e-17  Score=133.32  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCC------------C-----CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP------------T-----DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      ...+++|+++|++++|||||+++|++....            +     ...+.+.+.  ....+......+.++|+||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence            346799999999999999999999863110            0     011111111  112232233556799999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGE  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +|.......+..+|++++|+|+++...-+..  ..+..+...  ++| +|+++||+|+.+...       ......++..
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~  155 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence            8876666667889999999999875433332  222334433  677 678999999874321       0001123455


Q ss_pred             HHHHHhCC----ceEEEecCCCCC--------CHHHHHHHHHHHHc
Q 028239          145 ELRKQIGA----AAYIECSSKTQQ--------NVKAVFDTAIKVVL  178 (211)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~~~--------~v~~lf~~l~~~~~  178 (211)
                      .+....+.    .+++.+||++|.        ++.++++.+.+.+.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            56555553    489999999983        57788888877664

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.74  E-value=1.1e-17  Score=125.95  Aligned_cols=151  Identities=15%  Similarity=0.046  Sum_probs=91.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCC--------------C----------------CCCceeeeeeEEEEECCeEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK--FPT--------------D----------------YIPTVFDNFSANVAVDGSIVN   55 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~--~~~--------------~----------------~~~t~~~~~~~~~~~~~~~~~   55 (211)
                      +|+++|++++|||||+.+|+...  ...              .                ..+++.+.....+..++  +.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            58999999999999999996421  100              0                01111111222333444  66


Q ss_pred             EEEEeCCCCcCccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239           56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-------SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY  128 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  128 (211)
                      +.+||+||+..|...+...++.+|++++|+|+++..       ..+.. ..+ .... .....|+++++||+|+......
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEcccccccccc
Confidence            789999999877766666678899999999998842       11222 222 2222 2224689999999999732100


Q ss_pred             cccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHH
Q 028239          129 LADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVK  167 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~  167 (211)
                         .... .-..++...+.+..+.    .+++++||++|.|++
T Consensus       156 ---~~~~-~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 ---EERY-DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ---HHHH-HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence               0000 0011222333444432    479999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=6.4e-17  Score=119.99  Aligned_cols=171  Identities=12%  Similarity=0.123  Sum_probs=99.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeE-EEEEC-CeEEEEEEEeCCCCcCccccc-----cccccC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSA-NVAVD-GSIVNLGLWDTAGQEDYSRLR-----PLSYRG   77 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~-~~~~~-~~~~~l~l~D~~G~~~~~~~~-----~~~~~~   77 (211)
                      +++|+++|.+|+|||||+|.|++.........+.+ ..... ...+. .....+.+||+||........     ...+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            47999999999999999999998654332211111 01110 00111 112357799999975432221     223677


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-cccc-CCccccHHH---HHHHHHHh--
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-ADHV-GSNVITTAQ---GEELRKQI--  150 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~-~~~~~~~~~---~~~~~~~~--  150 (211)
                      +|.+++|.+  +  .+......|+..+...  +.|+++|+||+|+....... .... ....+..+.   ........  
T Consensus        81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899888743  2  2333335666777665  78999999999985432110 0000 000111111   12222221  


Q ss_pred             CCceEEEecCC--CCCCHHHHHHHHHHHHcCCch
Q 028239          151 GAAAYIECSSK--TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       151 ~~~~~~~~sa~--~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ...++|.+|+.  .+.++..+.+.++..+.+.++
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            22478999998  579999999999998876443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12735 elongation factor Tu; Reviewed

Probab=99.73  E-value=7.1e-17  Score=131.54  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-------CC-----CC-----CCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-------FP-----TD-----YIPTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-------~~-----~~-----~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ..+++|+++|++++|||||+++|+...       +.     +.     ..+.+.+.  ....+......+.|+||||+++
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence            467899999999999999999998621       10     00     11111111  1122222334567999999988


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |.......+..+|++++|+|+.+...-+..  .++..+...  ++|.+ +++||+|+.....       .......+...
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~  156 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence            776666677899999999999875443332  333334333  67865 6799999964321       00112335566


Q ss_pred             HHHHhCC----ceEEEecCCCCC----------CHHHHHHHHHHHHc
Q 028239          146 LRKQIGA----AAYIECSSKTQQ----------NVKAVFDTAIKVVL  178 (211)
Q Consensus       146 ~~~~~~~----~~~~~~sa~~~~----------~v~~lf~~l~~~~~  178 (211)
                      +.+.++.    .+++++||.+|.          ++.++++.|...+.
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            6666542    589999999984          67778887777653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.73  E-value=6.3e-17  Score=131.87  Aligned_cols=149  Identities=17%  Similarity=0.125  Sum_probs=95.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC-------C-----CC-----CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-------F-----PT-----DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------~-----~~-----~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      ..++++|+++|+.++|||||+++|+...       +     .+     ...+.+.+.  ..+.++.....+.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence            3567999999999999999999997421       0     00     001111111  122333334567799999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCcccCccccccccCCccccHHHHH
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLREDRGYLADHVGSNVITTAQGE  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +|..........+|++++|+|+++....+..  ..+..+...  ++|.+ +++||+|+.+...       ......++..
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~  155 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence            8876555567789999999999885443332  222333333  67755 6899999875321       0001234566


Q ss_pred             HHHHHhCC----ceEEEecCCCCC
Q 028239          145 ELRKQIGA----AAYIECSSKTQQ  164 (211)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~~~  164 (211)
                      .+.+.++.    .+++++||.++.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            67776653    589999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=7.8e-17  Score=121.00  Aligned_cols=112  Identities=15%  Similarity=0.115  Sum_probs=78.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc------e------eeee---eEEEEEC--------CeEEEEEEEeCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK--FPTDYIPT------V------FDNF---SANVAVD--------GSIVNLGLWDTA   62 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t------~------~~~~---~~~~~~~--------~~~~~l~l~D~~   62 (211)
                      +|+++|+.++|||||+.+|+...  +.....++      .      +...   .......        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998543  11110000      0      0000   0111222        346889999999


Q ss_pred             CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      |++.|.......++.+|++++|+|++++.+.+.. ..+.. ...  .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~-~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQ-ALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHH-HHH--cCCCEEEEEECCCcc
Confidence            9999999888899999999999999988776653 33332 222  268999999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.72  E-value=3.2e-16  Score=130.69  Aligned_cols=156  Identities=15%  Similarity=0.207  Sum_probs=122.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------ccccc--c
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSY--R   76 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~   76 (211)
                      ..+|+++|.||+|||||.|++.+.. ...++++.+.+.........+..  +++.|.||--.....      ...++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            4679999999999999999999977 77899999999988888888866  559999996544422      12222  4


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|+++-|.|+++-+..-.+    --++.+.  +.|++++.|+.|....+.           ..-+..++.+.++. |.+
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv  142 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV  142 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence            67999999999987754433    1223333  899999999999887653           34455778888998 999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .++|++|+|++++...+.+....+.
T Consensus       143 ~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         143 PTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEeecCCCHHHHHHHHHHhccccc
Confidence            9999999999999999987665544

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=1.4e-16  Score=130.32  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=96.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCC--C---------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP--T---------------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      +..+++|+++|++++|||||+++|++..-.  .               ...+.+.+.....+..++  ..+.+.|+||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence            456799999999999999999999864210  0               001111111111222233  456699999998


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGE  144 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +|.......+..+|++++|+|+.....-+..  ..+..+...  ++| +|+++||+|+.+...       ......++..
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~  155 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVR  155 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence            8776666667899999999999876544432  333444433  678 778999999975321       0001223555


Q ss_pred             HHHHHhCC----ceEEEecCCCCCC
Q 028239          145 ELRKQIGA----AAYIECSSKTQQN  165 (211)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~~~~  165 (211)
                      .+.+..+.    .+++.+||.+|.+
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhccc
Confidence            56665542    5899999999874

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.69  E-value=8.9e-16  Score=117.13  Aligned_cols=154  Identities=16%  Similarity=0.245  Sum_probs=111.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc-------ccccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP-------LSYRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~-------~~~~~~d   79 (211)
                      .|.++|-|++|||||++++.+.+ -...|..|+......++.+++-. .+.+-|+||--.-.++..       ..++.++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            67899999999999999999876 45677777644444455555432 277999999543332221       1356799


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           80 IFVLAFSLISR---ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      .++||+|++.+   .-++.+ +.+..+++.+.   .+.|.++|+||+|+.+.+             .....++++.+...
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~~  342 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQNP  342 (366)
T ss_pred             eEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCCC
Confidence            99999999988   666666 55555555443   689999999999986432             22245666776664


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .++++||+.++++.++++.|.+.
T Consensus       343 ~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  343 HVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             cEEEeeeccccchHHHHHHHhhc
Confidence            59999999999999999887653

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=4.2e-16  Score=120.41  Aligned_cols=115  Identities=18%  Similarity=0.154  Sum_probs=77.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCC---------------CCCCce---e-eeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPT---------------DYIPTV---F-DNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~---------------~~~~t~---~-~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      -+|+++|++|+|||||+++|+...  ...               ++.+..   + ........+....+.+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            369999999999999999998531  110               000000   0 0111222333344778899999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      +|.......++.+|++++|+|+++......  ..+.......  ++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence            888766667899999999999987644332  3344444333  7999999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.69  E-value=4.7e-17  Score=117.27  Aligned_cols=120  Identities=18%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc---cccCCcEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL---SYRGADIF   81 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~---~~~~~d~~   81 (211)
                      +.-.|+++|+.|+|||+|..+|..+.......+. .......+ -+...-.+.++|+|||++.+.....   +...+.++
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            3457999999999999999999999766655544 22222111 1122234669999999998863333   47789999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCc
Q 028239           82 VLAFSLIS-RASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~  126 (211)
                      |||+|.+. ...+.++.+.+++.+....   ..+|++|++||.|+....
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            99999974 4556666577777777554   589999999999987653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.2e-15  Score=123.98  Aligned_cols=159  Identities=17%  Similarity=0.203  Sum_probs=113.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .+++=|+++|+..-|||||+..+-.........+-. .....+.+.++. ..-.+.|+|||||+.|..++..-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            355669999999999999999999888665544443 233344555541 224467999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-------C-
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-------A-  152 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-  152 (211)
                      ++|+++++.--=+..     +.+.+.. .+.|++|+.||+|.++.+.             .....-.++++       . 
T Consensus        83 ILVVa~dDGv~pQTi-----EAI~hak~a~vP~iVAiNKiDk~~~np-------------~~v~~el~~~gl~~E~~gg~  144 (509)
T COG0532          83 ILVVAADDGVMPQTI-----EAINHAKAAGVPIVVAINKIDKPEANP-------------DKVKQELQEYGLVPEEWGGD  144 (509)
T ss_pred             EEEEEccCCcchhHH-----HHHHHHHHCCCCEEEEEecccCCCCCH-------------HHHHHHHHHcCCCHhhcCCc
Confidence            999999985432222     2222222 4999999999999986432             22222122222       1 


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ..++++||++|.|+++|+..+.-.....
T Consensus       145 v~~VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         145 VIFVPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             eEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999887766443

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=9.5e-16  Score=124.33  Aligned_cols=164  Identities=20%  Similarity=0.136  Sum_probs=119.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCC--------------CCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPT--------------DYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~--------------~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ++.-++.|+-+..-|||||..+|+...  ...              ...+.+ .......+..++..+.++++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            344578999999999999999998532  111              011111 111122333457889999999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      |.......+..|+++|+|+|+......+.+ ..++..++.   +..+|.|+||+|++..+.         .--..+..++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l  204 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL  204 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence            999999999999999999999998888877 444444543   788999999999988642         0112223333


Q ss_pred             HHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          147 RKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       147 ~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ...... +.+.+||++|.|++++++.+++.+..+.
T Consensus       205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            333344 7899999999999999999999987654

>COG2262 HflX GTPases [General function prediction only]

Probab=99.68  E-value=1.1e-15  Score=120.74  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=115.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC---------ccccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED---------YSRLRPL   73 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~   73 (211)
                      +....|.++|..++|||||+|+|.+.. +..+...++-+.....+.+.+ ...+.+-||.|.-+         |++..+.
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            456789999999999999999999765 556666677667777777764 23355899999432         2222221


Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                       ..++|.++.|+|++++.....+ ....+.+.+.. ..+|+|+|.||.|+..+.               ...........
T Consensus       269 -~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~~  331 (411)
T COG2262         269 -VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGSP  331 (411)
T ss_pred             -hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcCC
Confidence             4689999999999999776666 66667776654 579999999999976542               11122222222


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                       ..+.+||++|.|++.|++.|.+.+...
T Consensus       332 -~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         332 -NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             -CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence             578999999999999999999988643

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.67  E-value=1.2e-15  Score=127.83  Aligned_cols=116  Identities=19%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc--CCCC---------------CCCCCce---eeee-eEEEEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS--NKFP---------------TDYIPTV---FDNF-SANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~--~~~~---------------~~~~~t~---~~~~-~~~~~~~~~~~~l~l~D~~G   63 (211)
                      +.-+|+|+|++++|||||.++|+.  +...               .++.+..   +..+ .....+....+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            345999999999999999999974  1110               0000000   1111 11122333347788999999


Q ss_pred             CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +..|.......++.+|++++|+|+++......  ..++......  ++|+++++||+|+..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence            99988777778899999999999987643332  3444444433  899999999999764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.67  E-value=1.6e-15  Score=123.55  Aligned_cols=161  Identities=16%  Similarity=0.139  Sum_probs=101.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC---C--------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP---T--------------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~---~--------------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ..+++|+++|++++|||||+++|+.....   .              ...+.+.+..  ...+......+.++||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHH
Confidence            56789999999999999999999863110   0              0111111111  122222234567999999988


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |.......+..+|++++|+|+..+..-+.  ..++..+...  +.|.+ +++||+|+.....       .......+...
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~  156 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence            77666667889999999999987644333  2333444444  68876 6899999864221       00011223444


Q ss_pred             HHHHhCC----ceEEEecCCCCC----------CHHHHHHHHHHHH
Q 028239          146 LRKQIGA----AAYIECSSKTQQ----------NVKAVFDTAIKVV  177 (211)
Q Consensus       146 ~~~~~~~----~~~~~~sa~~~~----------~v~~lf~~l~~~~  177 (211)
                      +....+.    .+++.+||.++.          ++.++++.|...+
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            5544432    589999999875          4566776666654

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=7.7e-16  Score=133.67  Aligned_cols=116  Identities=18%  Similarity=0.221  Sum_probs=82.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--------CCC-----CCCCc---eeeee---eEEEEECCeEEEEEEEeCCC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--------FPT-----DYIPT---VFDNF---SANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--------~~~-----~~~~t---~~~~~---~~~~~~~~~~~~l~l~D~~G   63 (211)
                      .++..+|+|+|+.++|||||+++|+...        ...     ++.+.   .+...   ...+..++  +.+++|||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG   82 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPG   82 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCC
Confidence            3456799999999999999999998532        000     00000   00001   11233343  6788999999


Q ss_pred             CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +.+|...+..+++.+|++++|+|+++....... ..| ..+...  ++|+++++||+|+..
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVG  139 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCC
Confidence            999888888899999999999999988776654 444 334433  799999999999865

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=9.1e-16  Score=118.68  Aligned_cols=111  Identities=16%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--C------CC-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK--F------PT-----------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~--~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      +|+++|++++|||||+++|+...  .      .+           ...+.........+..++  +.+.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            58999999999999999997421  1      00           000111111112333444  567799999998888


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ..+...++.+|++++|+|+.+...-+.  ..++..+...  ++|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            888888999999999999987654433  2333444443  789999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=2e-15  Score=115.97  Aligned_cols=159  Identities=18%  Similarity=0.198  Sum_probs=112.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC-cCc----cccccc---cc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ-EDY----SRLRPL---SY   75 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~-~~~----~~~~~~---~~   75 (211)
                      ....|+|.|.||+|||||++++...+ -...|+.|+.......+..++  ..+|++||||- ++-    +.....   .+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            35689999999999999999999876 456788887666666666665  45779999993 211    111100   12


Q ss_pred             -cCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           76 -RGADIFVLAFSLI--SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        76 -~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                       .-.++++|++|.+  +.-+.+.. ..++..+..... .|+++|.||.|..+...            .+++.......+.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~------------~~~~~~~~~~~~~  310 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK------------LEEIEASVLEEGG  310 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH------------HHHHHHHHHhhcc
Confidence             3468899999985  45667777 677777777664 89999999999886532            2333333444444


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .....+++..+.+++.+-..+...+.+
T Consensus       311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         311 EEPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ccccceeeeehhhHHHHHHHHHHHhhc
Confidence            356788888888999888777776544

>PLN03127 Elongation factor Tu; Provisional

Probab=99.66  E-value=2.8e-15  Score=123.39  Aligned_cols=162  Identities=17%  Similarity=0.124  Sum_probs=99.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC------CCC-----------CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN------KFP-----------TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ..+++|+++|++++|||||+++|.+.      ...           +...+.+.+....  .++.....+.++||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHV--EYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEE--EEcCCCeEEEEEECCCccc
Confidence            46789999999999999999999632      100           0011111221122  2222335667999999988


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |.......+..+|++++|+|+++...-++  ...+..+...  ++| +|+++||+|+.+...       .......+..+
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~~  205 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELRE  205 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHHH
Confidence            76655555678999999999987644333  2333344444  688 578899999875321       00011123334


Q ss_pred             HHHHhC----CceEEEecCC---CCCC-------HHHHHHHHHHHHc
Q 028239          146 LRKQIG----AAAYIECSSK---TQQN-------VKAVFDTAIKVVL  178 (211)
Q Consensus       146 ~~~~~~----~~~~~~~sa~---~~~~-------v~~lf~~l~~~~~  178 (211)
                      +...++    ..+++.+||.   +|.|       +.++++.+...+.
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            444332    2488888876   4554       6778888777654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.66  E-value=1.6e-15  Score=124.89  Aligned_cols=158  Identities=13%  Similarity=0.085  Sum_probs=98.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------CCCceeeeee-------EEEEECCe
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD---------------------YIPTVFDNFS-------ANVAVDGS   52 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~---------------------~~~t~~~~~~-------~~~~~~~~   52 (211)
                      +..+++|+++|+.++|||||+.+|+...  ....                     ......++..       ........
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            3467899999999999999999887421  1100                     0000011111       11112233


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhhCCCC-cEEEEeeCCCccc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNV-PIVLVGTKLDLRE  124 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~  124 (211)
                      .+.+.++|+||+++|.......+..+|++|+|+|+++.. |       ....+.| ......  ++ ++|+++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~-~~~~~~--gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHA-LLAFTL--GVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHH-HHHHHc--CCCcEEEEEEcccCCc
Confidence            467789999999999988888899999999999998731 2       1221222 222222  56 4788999999762


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHH
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKA  168 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~  168 (211)
                      ...   .... ..-..+++..++++.+.    .+|+++||.+|+|+.+
T Consensus       160 ~~~---~~~~-~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKY---SKAR-YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhh---hHHH-HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            110   0000 00123556677777662    4899999999999853

>cd01850 CDC_Septin CDC/Septin

Probab=99.66  E-value=5.8e-15  Score=114.63  Aligned_cols=143  Identities=16%  Similarity=0.099  Sum_probs=90.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCcc-----
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYS-----   68 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----   68 (211)
                      ..++|+++|.+|+|||||+|+|++..+...          ..+|.. ......+..++..+.+.+|||||.....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999875443          233332 3334455667888999999999943221     


Q ss_pred             ---------------------cccccccc--CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           69 ---------------------RLRPLSYR--GADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        69 ---------------------~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                                           ..+...+.  .+|+++++++.+.. ..-.+  ..++..+..   .+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l~~---~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRLSK---RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHHhc---cCCEEEEEECCCcCC
Confidence                                 11112333  46677777776542 11222  233344432   689999999999855


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ..+        .......+.+.++.++. ++|.....
T Consensus       158 ~~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~  185 (276)
T cd01850         158 PEE--------LKEFKQRIMEDIEEHNI-KIYKFPED  185 (276)
T ss_pred             HHH--------HHHHHHHHHHHHHHcCC-ceECCCCC
Confidence            321        01334556677777776 67766553

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.66  E-value=2.1e-15  Score=124.88  Aligned_cols=149  Identities=17%  Similarity=0.142  Sum_probs=95.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC------CCCCC-----------CCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK------FPTDY-----------IPTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~------~~~~~-----------~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ..+++|+++|++++|||||+++|+...      ....+           .+...+.....+..++  ..+.++|+||++.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence            457899999999999999999998521      11111           0111111111222334  4667999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |.......+..+|++++|+|+.+...-+..  .++..+...  ++| +|+++||+|+.+...       ......++...
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~  225 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVRE  225 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHHH
Confidence            877666677899999999999877554443  333344443  677 778999999865321       00112234455


Q ss_pred             HHHHhC----CceEEEecCCCCCC
Q 028239          146 LRKQIG----AAAYIECSSKTQQN  165 (211)
Q Consensus       146 ~~~~~~----~~~~~~~sa~~~~~  165 (211)
                      +....+    ..+++.+||.++.+
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHhcCCCcCcceEEEEEcccccc
Confidence            555542    24899999998853

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.65  E-value=1.4e-14  Score=111.07  Aligned_cols=153  Identities=22%  Similarity=0.239  Sum_probs=113.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-------ccccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-------RLRPLSY   75 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~   75 (211)
                      +.-.+|+++|.|++|||||++.|.+.. -...|..|+.+.....+.+++  ..+|+.|+||--.-.       ...-...
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            445789999999999999999999977 567888899999999999999  556799999842211       2334468


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------C---------------------------------------
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFA-------P---------------------------------------  109 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------~---------------------------------------  109 (211)
                      ++||++++|+|+....+..+   .+..++....       |                                       
T Consensus       139 R~ADlIiiVld~~~~~~~~~---~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n  215 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRD---IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN  215 (365)
T ss_pred             ccCCEEEEEEecCCChhHHH---HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence            99999999999986554221   1222222111       1                                       


Q ss_pred             -----------------------CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239          110 -----------------------NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus       110 -----------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                                             -+|.++|.||.|+..               .++...+.+..   .++.+||..+.|+
T Consensus       216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nl  277 (365)
T COG1163         216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINL  277 (365)
T ss_pred             ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCH
Confidence                                   168899999999854               34444455554   6789999999999


Q ss_pred             HHHHHHHHHHHcC
Q 028239          167 KAVFDTAIKVVLQ  179 (211)
Q Consensus       167 ~~lf~~l~~~~~~  179 (211)
                      +++.+.|.+.+--
T Consensus       278 d~L~e~i~~~L~l  290 (365)
T COG1163         278 DELKERIWDVLGL  290 (365)
T ss_pred             HHHHHHHHHhhCe
Confidence            9999999998743

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.65  E-value=9.1e-15  Score=115.22  Aligned_cols=80  Identities=24%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEE---------------------ECC-eEEEEEEEeCCCC-
Q 028239            9 CVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVA---------------------VDG-SIVNLGLWDTAGQ-   64 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~l~D~~G~-   64 (211)
                      |+++|.|++|||||+++|.+... ...++.++.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998763 23344433222211111                     222 3467999999997 


Q ss_pred             ---cCcccccccc---ccCCcEEEEEEECC
Q 028239           65 ---EDYSRLRPLS---YRGADIFVLAFSLI   88 (211)
Q Consensus        65 ---~~~~~~~~~~---~~~~d~~i~v~d~~   88 (211)
                         +.+..+...+   ++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4444443443   89999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.64  E-value=2e-15  Score=125.35  Aligned_cols=156  Identities=15%  Similarity=0.098  Sum_probs=94.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCce----------------------eeeeeEEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY----------IPTV----------------------FDNFSANVA   48 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~----------~~t~----------------------~~~~~~~~~   48 (211)
                      ....++|+++|++++|||||+++|+...  +....          .++.                      .+.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            3567899999999999999999998542  21100          1110                      011111122


Q ss_pred             ECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239           49 VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY  128 (211)
Q Consensus        49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  128 (211)
                      .++  ..+.||||||++.|.......+..+|++++|+|+.....-+.. ..+ ..+... ...|+|+++||+|+......
T Consensus       104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccccchhH
Confidence            233  5677999999988866555557899999999999875432222 121 122222 13578999999998743210


Q ss_pred             cccccCCccccHHHHHHHHHHhC---CceEEEecCCCCCCHHHH
Q 028239          129 LADHVGSNVITTAQGEELRKQIG---AAAYIECSSKTQQNVKAV  169 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sa~~~~~v~~l  169 (211)
                            .......+...+.+..+   ..+++.+||++|.|+.++
T Consensus       179 ------~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 ------VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ------HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence                  00001112223333333   248999999999999865

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.64  E-value=1.6e-15  Score=123.99  Aligned_cols=151  Identities=19%  Similarity=0.140  Sum_probs=92.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCc-------------e---------eeeeeEEEEECCe
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDY----------IPT-------------V---------FDNFSANVAVDGS   52 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~----------~~t-------------~---------~~~~~~~~~~~~~   52 (211)
                      ++|+++|++++|||||+.+|+...  .....          .++             .         .+.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            589999999999999999997432  11100          000             0         111111222233 


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH  132 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  132 (211)
                       ..+.|+||||+++|.......+..+|++++|+|+.....-+.. +.+ ..+... ...++++++||+|+......    
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~~----  151 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDEE----  151 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchHH----
Confidence             5677999999998876555678899999999999876443332 222 222222 23468999999998643210    


Q ss_pred             cCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHH
Q 028239          133 VGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKA  168 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~  168 (211)
                        ......++...+.+..+.  .+++++||.+|+|+++
T Consensus       152 --~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 --VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             --HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              000011223334444443  3799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=5.6e-15  Score=100.33  Aligned_cols=105  Identities=22%  Similarity=0.261  Sum_probs=72.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---------ccccccc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---------LRPLSYR   76 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---------~~~~~~~   76 (211)
                      +|+|+|.+|+|||||+|+|++...  .....+++.......+.+++..+  .++||||-..-..         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998642  33344444444445566777665  4999999643211         1222348


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK  119 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  119 (211)
                      .+|++++|+|.+++.. +.. ..++..++   .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            8999999999887433 222 34445553   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=1.9e-15  Score=113.58  Aligned_cols=174  Identities=15%  Similarity=0.120  Sum_probs=113.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCce-eeeeeEEEEECCeEEEEEEEeCCCCcC-------ccccccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTV-FDNFSANVAVDGSIVNLGLWDTAGQED-------YSRLRPL   73 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~-~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~   73 (211)
                      +..+++|+++|..|+|||||||+|+.+...+.. .+.. .....-...++++  .+.+||+||-++       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence            456899999999999999999999975532221 1211 1122222234443  366999999654       4445566


Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc-----cccccccCCccccHHHHHHHHH
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR-----GYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      ++...|.++++.++.|+.---+. ..|.+.+... -+.++++++|.+|.....     ....++...++...+.+....+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            78899999999999988644443 5555554433 358999999999976542     1122222233333333333322


Q ss_pred             HhC-CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          149 QIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       149 ~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ... ..|++..+...+.|++.+...++..+-..
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            222 24788888999999999999999988643

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.63  E-value=4.4e-15  Score=122.41  Aligned_cols=156  Identities=13%  Similarity=0.071  Sum_probs=96.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------------------CCCCce---eeee-eEEEEECCe
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPT------------------------DYIPTV---FDNF-SANVAVDGS   52 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~------------------------~~~~t~---~~~~-~~~~~~~~~   52 (211)
                      +..+++|+++|+.++|||||+.+|+...  ...                        +..+..   +... .........
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            4567999999999999999999997521  110                        000000   0111 011112333


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS-------YENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE  124 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  124 (211)
                      ...+.|+|+||+.+|.......+..+|++++|+|++....       -+.. +.| ..+...  ++| +|+++||+|...
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~-eh~-~~~~~~--gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR-EHA-LLAFTL--GVKQMIVCINKMDDKT  159 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH-HHH-HHHHHc--CCCeEEEEEEcccccc
Confidence            4677799999999988777777899999999999987531       1221 333 233333  666 679999999432


Q ss_pred             --CccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHH
Q 028239          125 --DRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKA  168 (211)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~  168 (211)
                        ...     .. .....++...+....+.    .+++.+||.+|+|+.+
T Consensus       160 ~~~~~-----~~-~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQ-----ER-YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhH-----HH-HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              110     00 00122334444444443    5899999999999864

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1.2e-14  Score=105.06  Aligned_cols=160  Identities=16%  Similarity=0.166  Sum_probs=104.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCC----------cCcccc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQ----------EDYSRL   70 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~   70 (211)
                      .++...-|+++|-+++|||||+|+|++++--.....|.+ +....-+.+++.   +.+.|.||-          +.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            345667899999999999999999999762222222222 222223344543   569999992          223333


Q ss_pred             cccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239           71 RPLSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR  147 (211)
Q Consensus        71 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      ...|++   +-.++++++|+..+..-.+  ...++.+...  ++|++||+||+|.....+          . .......+
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~-~k~l~~v~  161 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLEL--GIPVIVVLTKADKLKKSE----------R-NKQLNKVA  161 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEccccCChhH----------H-HHHHHHHH
Confidence            344443   3568888999877766555  3556666666  899999999999876432          1 11122233


Q ss_pred             HHhCC---ce--EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          148 KQIGA---AA--YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       148 ~~~~~---~~--~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +....   ..  ++..|+..+.|++++...|.+.+..
T Consensus       162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22221   12  7889999999999999999887644

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.62  E-value=9.3e-15  Score=113.44  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCce-----------e---eeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPTV-----------F---DNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~-----~~t~-----------~---~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      +|+++|++|+|||||+++++...-....     .++.           +   ......+..++  +.+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999753311000     0010           0   00111233344  667899999998877


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ..+...++.+|++++|+|+++....... ..| ..+...  ++|.++++||+|+...
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~~  131 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCCC
Confidence            7777789999999999999887665543 333 334433  7899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.62  E-value=6.5e-15  Score=121.19  Aligned_cols=167  Identities=13%  Similarity=0.060  Sum_probs=103.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC---CCC-CCCce---eeeeeE-----------EE-EEC------------
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKF---PTD-YIPTV---FDNFSA-----------NV-AVD------------   50 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~---~~~-~~~t~---~~~~~~-----------~~-~~~------------   50 (211)
                      +++..++|.++|+...|||||+.+|.+...   ..+ ..+.+   +-....           .+ ..+            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            456789999999999999999999986321   110 00000   000000           00 000            


Q ss_pred             ----CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           51 ----GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        51 ----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                          .....+.|+|+||++.|-......+..+|++++|+|++++ ..-+.. +.+ ..+... .-.++|+|+||+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCH
Confidence                0023577999999998877666667899999999999874 233332 233 222222 23468999999998753


Q ss_pred             ccccccccCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          126 RGYLADHVGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ...        ....++..++....  ...+++.+||++|.|+++|++.|...+..
T Consensus       187 ~~~--------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        187 AQA--------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHH--------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            210        01112333333221  23489999999999999999999976644

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=3.9e-15  Score=128.02  Aligned_cols=154  Identities=18%  Similarity=0.120  Sum_probs=93.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CCCceee----------------------eeeEEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTVFD----------------------NFSANVAV   49 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~----------~~~t~~~----------------------~~~~~~~~   49 (211)
                      ...++|+++|++++|||||+++|+...  +...          ..+++.+                      .....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            457899999999999999999998643  2210          1111000                      01112222


Q ss_pred             CCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239           50 DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL  129 (211)
Q Consensus        50 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  129 (211)
                      ++  ..+.|+||||++.|.......+..+|++++|+|++....-+.. ..+ ..+... ...+++|++||+|+...... 
T Consensus       102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~-~~~~~~-~~~~iivvvNK~D~~~~~~~-  175 (632)
T PRK05506        102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHS-FIASLL-GIRHVVLAVNKMDLVDYDQE-  175 (632)
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHH-HHHHHh-CCCeEEEEEEecccccchhH-
Confidence            33  4566999999988765555567899999999999775433222 111 222222 23578899999998642110 


Q ss_pred             ccccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHH
Q 028239          130 ADHVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKA  168 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~  168 (211)
                           .......+..++...++.  .+++.+||++|.|+.+
T Consensus       176 -----~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 -----VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                 000011223334445443  3699999999999874

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.5e-15  Score=104.24  Aligned_cols=154  Identities=17%  Similarity=0.232  Sum_probs=113.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      +.=|++++|-.|+|||||++-|.+...   .+...||.     ..+.+.+  ++++.+|.+|+..-+..|..++..+|++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHheecC--ceEEEEccccHHHHHHHHHHHHhhhcee
Confidence            456999999999999999999988774   22323332     2334566  6788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH---HHhC------
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR---KQIG------  151 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------  151 (211)
                      ++.+|+-|.+.|.+....+-..+.... .+.|+++.+||+|.+..-            ++++.+...   +..+      
T Consensus        92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~  159 (193)
T KOG0077|consen   92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVN  159 (193)
T ss_pred             EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhccccccc
Confidence            999999999999998566555554443 699999999999987752            222221111   1111      


Q ss_pred             -------CceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          152 -------AAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       152 -------~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                             ....+.||...+.+-.+.|.|+.+.+
T Consensus       160 ~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  160 LTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             ccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence                   13457788888888888888876654

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.60  E-value=4.1e-14  Score=109.31  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=112.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----ccc---ccccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----LRP---LSYRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~~~---~~~~~~d   79 (211)
                      .|.++|-|++|||||++++...+ -...|+.|+....-..+.+. ..-.|.+-|+||--.-.+    +=.   ..+..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            57899999999999999999865 45678888866665566652 223466999999533221    111   1345688


Q ss_pred             EEEEEEECCChhh---HHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           80 IFVLAFSLISRAS---YENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      .++.|+|++..+-   .++. ..+..++..+.   .+.|.+||+||+|+....+          ........+.+..+..
T Consensus       240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~  308 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE  308 (369)
T ss_pred             eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence            9999999975543   4444 55666666654   5899999999999765432          3333344455444442


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .++.+||.++.|++++...+.+.+....
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            3333999999999999999999887764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.58  E-value=8.6e-14  Score=103.18  Aligned_cols=163  Identities=18%  Similarity=0.164  Sum_probs=99.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-----------ccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-----------LRP   72 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~~~   72 (211)
                      ++|+++|.+|+|||||+|++++.......   .+.+.........+++.  .+.++||||-.....           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            48999999999999999999987632221   12222222333445664  566999999654321           011


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      ....++|++++|+++.. .+-.+  ...++.+.+..   .-.+++++.|+.|......  ..+...  -.....+.+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~--~~~~~~--~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT--LEDYLE--NSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCc--HHHHHH--hccHHHHHHHHH
Confidence            23467899999999877 33232  33444444433   1357899999999654321  000000  011344556666


Q ss_pred             hCCceEEEec-----CCCCCCHHHHHHHHHHHHcC
Q 028239          150 IGAAAYIECS-----SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       150 ~~~~~~~~~s-----a~~~~~v~~lf~~l~~~~~~  179 (211)
                      .+. .|+..+     +..+.++.+|++.+.+.+.+
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            665 454444     45677899999988887765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.58  E-value=3.2e-15  Score=98.99  Aligned_cols=137  Identities=20%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----cccccCCcEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----PLSYRGADIFVL   83 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----~~~~~~~d~~i~   83 (211)
                      |++++|..|+|||||.+.+.+...-..  -|.      -+.++++ .   .+||||.-.-...|    .....++|.+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQ------Ave~~d~-~---~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQ------AVEFNDK-G---DIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--ccc------eeeccCc-c---ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            799999999999999999988753211  111      1222221 1   58999943322222    334678999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |-+++++++--.  ..+.+..     ..|+|-|++|.|+.++            -+.+..++|...-|..++|++|+.++
T Consensus        71 v~~and~~s~f~--p~f~~~~-----~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          71 VHAANDPESRFP--PGFLDIG-----VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             eecccCccccCC--ccccccc-----ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence            999999876333  2222222     4569999999999964            35677888999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIK  175 (211)
Q Consensus       164 ~~v~~lf~~l~~  175 (211)
                      .|++++++.|..
T Consensus       132 ~gv~~l~~~L~~  143 (148)
T COG4917         132 QGVEELVDYLAS  143 (148)
T ss_pred             ccHHHHHHHHHh
Confidence            999999988764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=3.4e-14  Score=123.31  Aligned_cols=114  Identities=17%  Similarity=0.105  Sum_probs=80.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--C---CCC--------------CCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK--F---PTD--------------YIPTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~--~---~~~--------------~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      .-+|+|+|++++|||||+++|+...  .   ...              ..+++.......+..++  +.+.+|||||+.+
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~   87 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD   87 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence            4499999999999999999997421  1   000              01111122223344455  6677999999998


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      +...+...++.+|++++|+|+.+....+..  .++..+...  +.|+++++||+|+...
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            887778889999999999999887666553  333344433  7899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=6.8e-14  Score=113.77  Aligned_cols=157  Identities=19%  Similarity=0.250  Sum_probs=111.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +++.=|-|+|+..-|||||+..|..........+-.   ..-|...+. +|+.  +.|.|||||..|..|+.....-.|+
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccE
Confidence            356678999999999999999998877554433322   122333333 5544  5599999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH------HHHhCC-
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL------RKQIGA-  152 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-  152 (211)
                      +++|+.++|.---+.+     +.+.... .+.|+||++||+|.+....            ..-.+++      .+.+|. 
T Consensus       228 vVLVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~p------------ekv~~eL~~~gi~~E~~GGd  290 (683)
T KOG1145|consen  228 VVLVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGANP------------EKVKRELLSQGIVVEDLGGD  290 (683)
T ss_pred             EEEEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCCH------------HHHHHHHHHcCccHHHcCCc
Confidence            9999999986433332     2333332 5999999999999876431            2222222      233333 


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++.+++||++|+|++.|-+.+.-.+.-.
T Consensus       291 VQvipiSAl~g~nl~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  291 VQVIPISALTGENLDLLEEAILLLAEVM  318 (683)
T ss_pred             eeEEEeecccCCChHHHHHHHHHHHHHh
Confidence            6889999999999999998887766443

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2e-14  Score=103.90  Aligned_cols=168  Identities=15%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc---CCcE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR---GADI   80 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---~~d~   80 (211)
                      +..-.|+++|+.++|||+|.-.|..+.+.+..++.  +.....+.+++..  +.++|.|||++.+.....++.   .+-+
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~aka  111 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKA  111 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHcccccccee
Confidence            34457999999999999999999888654443332  2223344455544  569999999998875555554   7999


Q ss_pred             EEEEEECC-ChhhHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccCccc--cccc----------------------
Q 028239           81 FVLAFSLI-SRASYENVLKKWMPELRRF---APNVPIVLVGTKLDLREDRGY--LADH----------------------  132 (211)
Q Consensus        81 ~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~--~~~~----------------------  132 (211)
                      ++||+|.. ......++-+.+++.+...   ...+|++++.||.|+.-.+..  +...                      
T Consensus       112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed  191 (238)
T KOG0090|consen  112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED  191 (238)
T ss_pred             EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence            99999974 3455666657778877766   268999999999998543211  1000                      


Q ss_pred             cCCccccHHHHHH--HHHHh-CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          133 VGSNVITTAQGEE--LRKQI-GAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       133 ~~~~~~~~~~~~~--~~~~~-~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      ...+...-.++..  |.+-. .-+.|.+.|++++ +++++-+|+.++
T Consensus       192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            0011111111111  11111 1246888999988 899999998765

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=1e-13  Score=111.09  Aligned_cols=160  Identities=18%  Similarity=0.186  Sum_probs=116.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--CCC-----C---------CCCce--eeeeeEEEEE-CCeEEEEEEEeCCCCcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK--FPT-----D---------YIPTV--FDNFSANVAV-DGSIVNLGLWDTAGQED   66 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~---------~~~t~--~~~~~~~~~~-~~~~~~l~l~D~~G~~~   66 (211)
                      .-+..++-+-.-|||||..|++...  +..     .         ..+.+  .......+.. ++..|.++++|||||-+
T Consensus         9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD   88 (603)
T COG0481           9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   88 (603)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence            3467889999999999999998532  111     1         11111  1111222332 46889999999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      |.-.....+..|-+.++|+|++..-..+.+ ...+..+.+   +.-+|-|+||+||+....            +.-.+++
T Consensus        89 FsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adp------------ervk~eI  152 (603)
T COG0481          89 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADP------------ERVKQEI  152 (603)
T ss_pred             eEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCH------------HHHHHHH
Confidence            998888889999999999999998777777 455555544   688899999999998642            2223344


Q ss_pred             HHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          147 RKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       147 ~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .+-.+.  ...+.+||++|.||+++++.+++.+-.+.
T Consensus       153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             HHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence            444444  35789999999999999999999987654

>PRK12739 elongation factor G; Reviewed

Probab=99.57  E-value=9.3e-14  Score=120.60  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-----C---CC-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-----F---PT-----------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-----~---~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      .+..+|+|+|++++|||||+++|+...     .   .+           ...+++.......+..++  ..+.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            345689999999999999999997521     1   10           011111111223344455  56779999999


Q ss_pred             cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ..|...+...++.+|++++|+|+.+....++.  ..+..+...  +.|+|+++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            88777777789999999999999887655543  333344443  789999999999874

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2.9e-14  Score=114.65  Aligned_cols=163  Identities=20%  Similarity=0.160  Sum_probs=109.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-ccccc--------cc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLR--------PL   73 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~--------~~   73 (211)
                      ..++|+++|.||+|||||+|.|.+..  ++....+|+.+.....+.++|..  +.+.||+|... -....        ..
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence            45899999999999999999999876  77888899999999999999954  55999999755 22111        12


Q ss_pred             cccCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhC-------CCCcEEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239           74 SYRGADIFVLAFSLI--SRASYENVLKKWMPELRRFA-------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE  144 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      .+..+|.+++|+|+.  +-++-..+ ...+.......       ...|++++.||.|+...-..         ... ...
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~---------~~~-~~~  413 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE---------MTK-IPV  413 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCcccc---------ccC-Cce
Confidence            467899999999993  33332232 22222222211       24789999999998765210         000 000


Q ss_pred             HHHHH--h-CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          145 ELRKQ--I-GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       145 ~~~~~--~-~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      .+...  . ......++|+++++|++.|.+.+.......
T Consensus       414 ~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  414 VYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             eccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            11111  1 111355699999999999998888776543

>cd00066 G-alpha G protein alpha subunit

Probab=99.56  E-value=8e-14  Score=110.39  Aligned_cols=128  Identities=14%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCC
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----------ASYENVLKKWMPELRRFA-PNVPIVLVGTKLD  121 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  121 (211)
                      .+.+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+...+.... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            47788999999999999999999999999999999874          345555445554444433 6899999999999


Q ss_pred             cccCcccc------ccccCCccccHHHHHHHHHH-----h----CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          122 LREDRGYL------ADHVGSNVITTAQGEELRKQ-----I----GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       122 l~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      +..+.-..      .++..-...+.+.+..+...     .    ..+..+.++|.+..++..+|+.+.+.++..
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            75543221      11111102234444443322     1    123456799999999999999988887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=4.5e-14  Score=111.63  Aligned_cols=159  Identities=17%  Similarity=0.141  Sum_probs=98.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------------------CCCCce---eeee-eEEEEECC
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNK--FPT------------------------DYIPTV---FDNF-SANVAVDG   51 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~------------------------~~~~t~---~~~~-~~~~~~~~   51 (211)
                      +...+++++++|++++|||||+-+|+-..  ++.                        +...+.   +.++ .......-
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            55678999999999999999999887321  111                        000000   0011 01111222


Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-------SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ..+.+.|.|+||+..|-...-....+||+.|+|+|+.+.+       ..+.- ++  ..+.....-..+||++||+|+.+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtr-EH--~~La~tlGi~~lIVavNKMD~v~  159 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTR-EH--AFLARTLGIKQLIVAVNKMDLVS  159 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchh-HH--HHHHHhcCCceEEEEEEcccccc
Confidence            3367889999999998887777889999999999998763       11111 11  11222223456789999999987


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l  169 (211)
                      -+..     ....+ ..+...+.+..+.    .+|+.+|+..|+|+.+-
T Consensus       160 wde~-----rf~ei-~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         160 WDEE-----RFEEI-VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             cCHH-----HHHHH-HHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            4321     11111 1222335555554    46999999999987643

>TIGR00503 prfC peptide chain release factor 3

Probab=99.54  E-value=7.7e-14  Score=117.00  Aligned_cols=116  Identities=18%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc--CCCCC------C---------CCCce---eeee-eEEEEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS--NKFPT------D---------YIPTV---FDNF-SANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~--~~~~~------~---------~~~t~---~~~~-~~~~~~~~~~~~l~l~D~~G   63 (211)
                      +..+|+|+|++++|||||+++|+.  +....      .         +.+..   +..+ .....++...+.+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            456999999999999999999863  21110      0         00000   1111 12233344457788999999


Q ss_pred             CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +..|.......++.+|++++|+|+++...-..  ..+......  .++|+++++||+|+..
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECccccC
Confidence            98888766667899999999999987532222  344444443  3799999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.52  E-value=3.8e-13  Score=109.13  Aligned_cols=82  Identities=23%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEE---------------------EC-CeEEEEEEEeCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVA---------------------VD-GSIVNLGLWDTAG   63 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~l~l~D~~G   63 (211)
                      ++|+++|.|++|||||+++|.+.... ..+++++.+.......                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987643 3454444322222211                     11 1336788999999


Q ss_pred             Cc----Ccccccccc---ccCCcEEEEEEECC
Q 028239           64 QE----DYSRLRPLS---YRGADIFVLAFSLI   88 (211)
Q Consensus        64 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   88 (211)
                      ..    ....+-..+   ++.+|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    233333344   78999999999996

>PRK09866 hypothetical protein; Provisional

Probab=99.52  E-value=5.9e-13  Score=111.31  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=75.1

Q ss_pred             EEEEEEeCCCCcCc-----cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239           54 VNLGLWDTAGQEDY-----SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY  128 (211)
Q Consensus        54 ~~l~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  128 (211)
                      ..+.|.||||-...     .......+..+|++++|+|.+...+..+  ..+.+.+.....+.|+++|+||+|+.+... 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree-  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS-  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence            34668999996442     1122336899999999999987655554  344555555422369999999999864321 


Q ss_pred             cccccCCccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          129 LADHVGSNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                               -..+....+....      ....+|++||+.|.|++.+++.+.+.=
T Consensus       307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~  352 (741)
T PRK09866        307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG  352 (741)
T ss_pred             ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence                     1233344433211      234689999999999999999988743

>PRK12740 elongation factor G; Reviewed

Probab=99.51  E-value=3.2e-13  Score=117.23  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=73.4

Q ss_pred             ECCCCCCHHHHHHHHhcCC--CCC--CCC-C-ce----------e---eeeeEEEEECCeEEEEEEEeCCCCcCcccccc
Q 028239           12 VGDGAVGKTCMLICYTSNK--FPT--DYI-P-TV----------F---DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP   72 (211)
Q Consensus        12 iG~~~~GKSsli~~l~~~~--~~~--~~~-~-t~----------~---~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~   72 (211)
                      +|++++|||||+++|+...  ...  ... + +.          +   ......+..++  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            6999999999999996432  100  000 0 00          0   11112333444  6778999999988877777


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ..++.+|++++|+|++........ ..| ..+...  +.|+++|+||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence            788999999999999887766654 333 333333  789999999999764

>PRK00007 elongation factor G; Reviewed

Probab=99.48  E-value=7.4e-13  Score=115.00  Aligned_cols=115  Identities=14%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC--CC------CC-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN--KF------PT-----------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~--~~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      +..+|+|+|.+++|||||+++|+..  ..      ..           ...+++.+.....+...+  ..+.++||||+.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~   86 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV   86 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence            3459999999999999999999741  11      10           011122222223344455  567799999998


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      .|.......++.+|++++|+|+......++. . .+..+...  +.|.|+++||+|+...
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~-~~~~~~~~--~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-T-VWRQADKY--KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhH-H-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence            7766666678899999999999877666653 3 33344444  7899999999998753

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.47  E-value=1.6e-12  Score=99.40  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=78.1

Q ss_pred             cCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH
Q 028239           65 EDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG  143 (211)
Q Consensus        65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  143 (211)
                      +++..+.+.+++++|++++|||++++. ++..+ ..|+..+..  .++|+++|+||+||.+.+.          +..++.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence            778888888999999999999999887 88888 888877654  4899999999999975432          444444


Q ss_pred             HHHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239          144 EELRKQIGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       144 ~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      ..+. ..+. +++++||++|.|++++|+.+..
T Consensus        91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            4443 4665 8999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00275 G_alpha G protein alpha subunit

Probab=99.46  E-value=5.5e-13  Score=106.47  Aligned_cols=127  Identities=16%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----------ASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL  122 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl  122 (211)
                      +.+.+||.+|+...+..|..++.++++++||+|+++.          ..+.+....|...+.... .+.|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            6678999999999999999999999999999999874          345555444444444332 68999999999997


Q ss_pred             ccCcccc------ccccCCccccHHHHHHHHHH-----hC-----CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          123 REDRGYL------ADHVGSNVITTAQGEELRKQ-----IG-----AAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       123 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ....-..      .+.. ....+.+.+.++...     ..     .+..+.++|.+-.++..+|+.+...+....
T Consensus       264 ~~~Kl~~~~l~~~fp~y-~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDY-KGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCC-CCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            6532211      1111 111233444333222     11     234577889999999999999888776543

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.46  E-value=9.2e-13  Score=116.90  Aligned_cols=153  Identities=19%  Similarity=0.257  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECC------e----------EEEEEEEeCCCCcCccccccccccCCc
Q 028239           17 VGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDG------S----------IVNLGLWDTAGQEDYSRLRPLSYRGAD   79 (211)
Q Consensus        17 ~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~------~----------~~~l~l~D~~G~~~~~~~~~~~~~~~d   79 (211)
                      ++||||+.++.+...+....+-..... ...+..+.      .          .-.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            359999999998876554333321111 11222221      0          012679999999999888777888999


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc-----cccccCC-ccccHHHH-------
Q 028239           80 IFVLAFSLISR---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY-----LADHVGS-NVITTAQG-------  143 (211)
Q Consensus        80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~~~-~~~~~~~~-------  143 (211)
                      ++++|+|+++.   .+++.+     ..+...  ++|+++|+||+|+......     ....... ..-...+.       
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI-----NILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH-----HHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999873   444433     233333  7899999999998642110     0000000 00000000       


Q ss_pred             -HHHH------------HH-hCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          144 -EELR------------KQ-IGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       144 -~~~~------------~~-~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                       .++.            +. .+..+++++||++|+|+++|+..|...
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence             0011            11 133589999999999999999877654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.44  E-value=5e-13  Score=91.48  Aligned_cols=113  Identities=27%  Similarity=0.349  Sum_probs=80.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+++|..|+|||+|+.++....+...+. ++.+                          +........+.++.+++||
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998777754433 3322                          2223344577889999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      +.++.++++.+   |...+.... .+.|.++++||.|+.+...          +..++..         .|+++|++++.
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~  112 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE  112 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence            99999998764   555554433 4788999999999854322          3333332         45678888998


Q ss_pred             CHH
Q 028239          165 NVK  167 (211)
Q Consensus       165 ~v~  167 (211)
                      |+.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.44  E-value=2.3e-12  Score=99.01  Aligned_cols=177  Identities=16%  Similarity=0.177  Sum_probs=114.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccC----CcEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRG----ADIFV   82 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~----~d~~i   82 (211)
                      -+|+|+|+.++|||||+.+|.+..-...-.+.........-...+....+.+|=..|+--...+....+..    -..+|
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi  132 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI  132 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence            37999999999999999999876633322211111111111112233556689888865444443333322    24778


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCC----------------------------------------------------
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPN----------------------------------------------------  110 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~----------------------------------------------------  110 (211)
                      ++.|++++...-+.+++|...+.+...+                                                    
T Consensus       133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL  212 (473)
T KOG3905|consen  133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL  212 (473)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence            9999999966555558888777644210                                                    


Q ss_pred             ----------CcEEEEeeCCCcccCcccc-ccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          111 ----------VPIVLVGTKLDLREDRGYL-ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       111 ----------~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                                +|++||++|||...--+.. .-..++-.......+.|+-+++. ..+.+|+++..|++-+..+|++.++-
T Consensus       213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence                      7999999999974321100 00111122344567889999998 88999999999999999999999876


Q ss_pred             Cchhh
Q 028239          180 PPRRK  184 (211)
Q Consensus       180 ~~~~~  184 (211)
                      -.-+.
T Consensus       292 ~~ftt  296 (473)
T KOG3905|consen  292 FPFTT  296 (473)
T ss_pred             cccCC
Confidence            54433

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.44  E-value=2.3e-13  Score=109.69  Aligned_cols=170  Identities=15%  Similarity=0.078  Sum_probs=117.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---c-cccc-----cc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---S-RLRP-----LS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---~-~~~~-----~~   74 (211)
                      ..-+++++|.|++|||||++.+.... -...|..|+...+...+.+..  ..++++||||--+-   + ...+     ..
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            34589999999999999998887655 445666666555544444444  56779999994211   1 1111     11


Q ss_pred             ccCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH--HHHHHHh
Q 028239           75 YRGADIFVLAFSLI--SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG--EELRKQI  150 (211)
Q Consensus        75 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  150 (211)
                      .+--.+++|+.|++  .+-|..+. -.++..+.....|.|+|+|+||+|+.....          ++++..  .+.....
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~  313 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD  313 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence            22345778888886  45677766 677788888888999999999999877654          444332  2223333


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHHHHcCCchhhHHH
Q 028239          151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMM  187 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~~  187 (211)
                      +.++++++|+.+.+||-++.......++..+-.....
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klk  350 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLK  350 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence            4458999999999999999999888888766555543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.43  E-value=3.8e-12  Score=102.01  Aligned_cols=162  Identities=16%  Similarity=0.134  Sum_probs=112.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCCCC------Cce------e-eeeeEEEEECCeEEEEEEEeCCCCcCccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYI------PTV------F-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLR   71 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~------~t~------~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~   71 (211)
                      -+|+|+-+..-|||||+..|+...  |.....      .+.      + +...+...+....+.++|.|||||.+|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            479999999999999999998643  322100      000      1 1223333333344778899999999999999


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      +..+.-+|++++++|+.+..-=+.- -.+.+.+.   .+.+-|||+||+|.+..+.         ..-.+++..+.-.++
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L~  152 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARP---------DEVVDEVFDLFVELG  152 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            9999999999999999887533321 11222222   2677799999999987654         123344455554444


Q ss_pred             C------ceEEEecCCCC----------CCHHHHHHHHHHHHcCCc
Q 028239          152 A------AAYIECSSKTQ----------QNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       152 ~------~~~~~~sa~~~----------~~v~~lf~~l~~~~~~~~  181 (211)
                      +      .|++..|+.+|          .++..||+.|++++..+.
T Consensus       153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            3      48899999887          479999999999987755

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.42  E-value=6.8e-13  Score=115.61  Aligned_cols=116  Identities=18%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CC---------CCCCC-------ceeee-eeEEEEECCeEEEEEEEeCCCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FP---------TDYIP-------TVFDN-FSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~---------~~~~~-------t~~~~-~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      +..+|+++|+.++|||||+++|+...  ..         .++.+       |.... .......++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            34599999999999999999997531  00         01111       11111 11122345566889999999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +|.......++.+|++++|+|+.+....+.. ..|.. ...  .+.|.++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-ALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-HHH--cCCCEEEEEEChhccc
Confidence            9887777889999999999999876444432 23322 222  2678899999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK13768 GTPase; Provisional

Probab=99.41  E-value=1.5e-12  Score=100.03  Aligned_cols=123  Identities=15%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             EEEEEeCCCCcCcc---cccccccc---C--CcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           55 NLGLWDTAGQEDYS---RLRPLSYR---G--ADIFVLAFSLISRASYENVL-KKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        55 ~l~l~D~~G~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      .+.+||+||+..+.   ..+..+++   .  ++++++|+|+.......+.. ..|.........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            46699999986543   23322222   2  89999999996544333321 2222222222248999999999998764


Q ss_pred             ccccc--cccCC---------------ccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          126 RGYLA--DHVGS---------------NVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       126 ~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      .....  .....               ....... .+..++.+. .+++++||+++.|++++.++|.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLEL-LRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHH-HHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            32100  00000               0000001 112223342 37899999999999999999988764

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.41  E-value=3.1e-12  Score=99.33  Aligned_cols=155  Identities=16%  Similarity=0.165  Sum_probs=99.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCC---CCC---------CCCCceeee---------------------eeEE-E
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNK---FPT---------DYIPTVFDN---------------------FSAN-V   47 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~---------~~~~t~~~~---------------------~~~~-~   47 (211)
                      .....+|.+.+|+..-||||||-||+...   +.+         ....+.++.                     +.+. +
T Consensus         2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF   81 (431)
T COG2895           2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF   81 (431)
T ss_pred             CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence            45667999999999999999999998643   100         000111111                     1111 1


Q ss_pred             EECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           48 AVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        48 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      ..+.  .+|.+-|||||+.|.........-||+.|+++|+...---+.-...++   .....-..++|+.||+||.+..+
T Consensus        82 sT~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I---~sLLGIrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          82 STEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI---ASLLGIRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             cccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHH---HHHhCCcEEEEEEeeecccccCH
Confidence            1122  456699999999999888888889999999999865433332222222   22222456789999999988643


Q ss_pred             ccccccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHH
Q 028239          128 YLADHVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVK  167 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~  167 (211)
                      ..      ......+-..|+.+++.  ..++++||..|+||-
T Consensus       157 ~~------F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 EV------FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HH------HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            10      00112334557777765  478999999999875

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.40  E-value=7.1e-12  Score=97.44  Aligned_cols=119  Identities=12%  Similarity=0.133  Sum_probs=71.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc-------c
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL-------S   74 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------~   74 (211)
                      ...++|+++|.+|+||||++|++++...  .....++...........++  ..+.||||||..........       +
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            3568999999999999999999998763  22222222222222233455  56789999997654221111       1


Q ss_pred             c--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccC
Q 028239           75 Y--RGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRED  125 (211)
Q Consensus        75 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~  125 (211)
                      +  ...|++++|..++... +......+++.+....   .-.++||+.|+.|....
T Consensus       114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            1  2689999996654321 1111123333343332   13578999999997643

>TIGR00101 ureG urease accessory protein UreG

Probab=99.40  E-value=8.3e-12  Score=92.51  Aligned_cols=102  Identities=21%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE--EEEeeCCCcccCcccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI--VLVGTKLDLREDRGYLAD  131 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~~~~~~~  131 (211)
                      ....++++.|........+   .-+|.++.|+|+.+.++...   .+..       ++.+  ++++||+|+.+...    
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~~----  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMVG----  154 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhcccccc----
Confidence            3445778877422222221   12688999999988776432   1111       3334  89999999975311    


Q ss_pred             ccCCccccHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          132 HVGSNVITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                            ...+...+..+.+ ...+++++||++|.|++++|+++.+++.
T Consensus       155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                  2233334444442 2358999999999999999999997764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=7.7e-13  Score=110.91  Aligned_cols=171  Identities=15%  Similarity=0.204  Sum_probs=108.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----eeeeeE-----------------EEEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----FDNFSA-----------------NVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~----~~~~~~-----------------~~~~~~~~~~l~l~D~~G   63 (211)
                      +..=+||+|+..+|||-|+..+.+........+..    +.+|..                 .+.+.+    +.++||||
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg----~lvIdtpg  549 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG----LLVIDTPG  549 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe----eEEecCCC
Confidence            34568999999999999999999876544333322    111111                 122222    56999999


Q ss_pred             CcCccccccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC-----ccccccc--c
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISR---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-----RGYLADH--V  133 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~--~  133 (211)
                      ++.|..++......||.+|+|+|+...   ++.+.+     ++++..  ++||||++||+|....     +.++...  -
T Consensus       550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkk  622 (1064)
T KOG1144|consen  550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKK  622 (1064)
T ss_pred             chhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence            999999999999999999999998654   444433     444444  8999999999995321     1111000  0


Q ss_pred             CCccccH-------HHHHHHHH-HhC------------CceEEEecCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239          134 GSNVITT-------AQGEELRK-QIG------------AAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       134 ~~~~~~~-------~~~~~~~~-~~~------------~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      +...+..       ..+.+|++ .++            .+.++++||..|+||-+|+.+|++........+..
T Consensus       623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~  695 (1064)
T KOG1144|consen  623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA  695 (1064)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            0000000       01111211 111            13567899999999999999999988665555443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=1.3e-12  Score=96.51  Aligned_cols=175  Identities=14%  Similarity=0.186  Sum_probs=111.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---cccccccCCcEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---LRPLSYRGADIFVL   83 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~~i~   83 (211)
                      .+|+++|...+||||+.+..+++..+.+......+.....-.+.+..+.+++||+|||-.+-.   -.+..++.+.++++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            579999999999999999988887655533322222222223345668899999999865432   23456899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCcccc-ccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYL-ADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      |+|+.+.  +.+....+...+....   |++.+-|.+.|.|...+.-.. ..+........+.+..-...... .|+.+|
T Consensus       108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~v-sf~LTS  184 (347)
T KOG3887|consen  108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQV-SFYLTS  184 (347)
T ss_pred             EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceE-EEEEee
Confidence            9997653  3333366666665544   789999999999975443211 00000111112222222222232 566666


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhhH
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      .. ..++-++|..++++++.+-..-+
T Consensus       185 Iy-DHSIfEAFSkvVQkLipqLptLE  209 (347)
T KOG3887|consen  185 IY-DHSIFEAFSKVVQKLIPQLPTLE  209 (347)
T ss_pred             ec-chHHHHHHHHHHHHHhhhchhHH
Confidence            65 67899999999999987644433

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.38  E-value=5.5e-12  Score=96.41  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---c-------c
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---L-------R   71 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~-------~   71 (211)
                      ...++|+|+|.+|+|||||+|++++.....  ...+++..........++  ..+.+|||||-.....   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            356899999999999999999999976422  222333222223334455  4567999999654421   0       1


Q ss_pred             cccc--cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCC---CCcEEEEeeCCCcccCc
Q 028239           72 PLSY--RGADIFVLAFSLISR-ASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLREDR  126 (211)
Q Consensus        72 ~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~  126 (211)
                      ..++  ...|++++|..++.. .+..+  ..+++.+.....   -.++++|.||+|...+.
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            1122  257888888766543 22332  244444444321   25799999999986544

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.37  E-value=4e-12  Score=95.65  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=74.8

Q ss_pred             EEEEEEeCCCCcC-cc-----ccccccc--cCCcEEEEEEEC---CChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           54 VNLGLWDTAGQED-YS-----RLRPLSY--RGADIFVLAFSL---ISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        54 ~~l~l~D~~G~~~-~~-----~~~~~~~--~~~d~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                      ....++|||||-. |.     ++....+  ....++++|+|.   +++.+|-.-.-.--..+.+  ...|+|++.||+|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccc
Confidence            5566999999732 21     2222222  234566777775   4455554431222223333  38999999999998


Q ss_pred             ccCccc---------cc------cccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239          123 REDRGY---------LA------DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       123 ~~~~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      .+..=-         ++      .......+......-+-+-++.+..+-+||.+|.|++++|..+.+.+-+......+
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp  272 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKP  272 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            764210         00      00011112222233333344445678899999999999999998888665544444

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.5e-11  Score=95.35  Aligned_cols=170  Identities=17%  Similarity=0.187  Sum_probs=104.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCC----CCCCCCCcee----eeeeEEEEE-------CCeEEEEEEEeCCCCcC
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNK----FPTDYIPTVF----DNFSANVAV-------DGSIVNLGLWDTAGQED   66 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~----~~~~~~~t~~----~~~~~~~~~-------~~~~~~l~l~D~~G~~~   66 (211)
                      ++...+++.++|+.++|||||.+++..-.    |.....++..    +.--..+.+       .++..++.++|+||+..
T Consensus         3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas   82 (522)
T KOG0461|consen    3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS   82 (522)
T ss_pred             CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence            45567999999999999999999997532    4444333331    111112222       35778899999999976


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      .-...-....-.|..++|+|+.....-+.++-..+..+.    ....+||+||.|.-.+...       ..-..+...+.
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr-------~ski~k~~kk~  151 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQR-------ASKIEKSAKKV  151 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhh-------hhHHHHHHHHH
Confidence            544433344556888999999876555554122222222    3445778888886543210       00111222223


Q ss_pred             HHHh------CCceEEEecCCCC----CCHHHHHHHHHHHHcCCch
Q 028239          147 RKQI------GAAAYIECSSKTQ----QNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       147 ~~~~------~~~~~~~~sa~~~----~~v~~lf~~l~~~~~~~~~  182 (211)
                      .+.+      +..|++++||.+|    +++.+|.+.|..++.++.+
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence            2222      2269999999999    7788888888777776543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.36  E-value=2.5e-11  Score=100.01  Aligned_cols=173  Identities=20%  Similarity=0.257  Sum_probs=112.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE--CCeEEEEEEEeCCCCcCccccccccccC----Cc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAV--DGSIVNLGLWDTAGQEDYSRLRPLSYRG----AD   79 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~l~l~D~~G~~~~~~~~~~~~~~----~d   79 (211)
                      -.|+|+|..++|||||+.+|.+..-   ...+.+-.|.+ .+.-  .+....+.+|-..|...+..+....+..    --
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            4899999999999999999876432   22333333322 1211  1233567899998876666655544432    24


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-----------------------------------C---------------
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFA-----------------------------------P---------------  109 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------~---------------  109 (211)
                      .+++|.|++.|..+-+-+..|+..++...                                   +               
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            77889999998665544466655444211                                   0               


Q ss_pred             -------------CCcEEEEeeCCCcccCccccc-cccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239          110 -------------NVPIVLVGTKLDLREDRGYLA-DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       110 -------------~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                                   .+|++||++|+|....-+... -..++-.+.....+.++-.+|+ ..+.+|++...+++.|+.+|.+
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence                         169999999999754211100 0001111333446788889998 7888999999999999999999


Q ss_pred             HHcCCchh
Q 028239          176 VVLQPPRR  183 (211)
Q Consensus       176 ~~~~~~~~  183 (211)
                      .++...-.
T Consensus       262 ~l~~~~f~  269 (472)
T PF05783_consen  262 RLYGFPFK  269 (472)
T ss_pred             HhccCCCC
Confidence            98775543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.33  E-value=8.6e-12  Score=98.19  Aligned_cols=130  Identities=17%  Similarity=0.161  Sum_probs=86.8

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhhC--CCCcEEEEeeCCC
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS----------YENVLKKWMPELRRFA--PNVPIVLVGTKLD  121 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D  121 (211)
                      ..+.++|.+||..-+..|.+.+.+++++|||.++++.+.          +.+. ..+++.+-+..  .+.++|+++||.|
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS-~~LF~sI~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES-LKLFESICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH-HHHHHHHhcCcccccCcEEEEeecHH
Confidence            667799999999999999999999999999999876433          2222 22333333322  6899999999999


Q ss_pred             cccCcccc-----ccccCCccccHHHHHHHHHH-----hC----CceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          122 LREDRGYL-----ADHVGSNVITTAQGEELRKQ-----IG----AAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       122 l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      +..+....     ....-.+....+++..+.+.     +.    ..-...++|.+-.+|+.+|..+...+.....+.
T Consensus       274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~  350 (354)
T KOG0082|consen  274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD  350 (354)
T ss_pred             HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            86653321     11111222334444333322     11    123566899999999999999999887765443

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.33  E-value=2.1e-11  Score=106.62  Aligned_cols=116  Identities=16%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc------ee------eee-----eEEEEECCeEEEEEEEeCCCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPT------VF------DNF-----SANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t------~~------~~~-----~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      +.-+|+++|+.++|||||+.+|+...  ......+.      ..      ...     ...+..++..+.+.|+||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            33479999999999999999998532  11110000      00      000     0111224445778899999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +|.......++.+|++++|+|+......+.. ..|.... ..  +.|.|+++||+|...
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~-~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQAL-RE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHH-Hc--CCCeEEEEECchhhc
Confidence            9887777788999999999999876544443 3443322 22  567899999999763

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.32  E-value=8.4e-11  Score=96.68  Aligned_cols=163  Identities=22%  Similarity=0.313  Sum_probs=119.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+.+++.++|+.++|||.|++.++++.+...+.++....+. ..+...+....+.+-|.+-. ...-....- ..||.+.
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            45689999999999999999999999988876666644443 34455577777888888754 222222211 6799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ++||.+++.+|..+ ....+..... ..+|+++|++|+|+.....         ...... .+++++++..+-+.+|.+.
T Consensus       501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q---------~~~iqp-de~~~~~~i~~P~~~S~~~  568 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ---------RYSIQP-DEFCRQLGLPPPIHISSKT  568 (625)
T ss_pred             EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh---------ccCCCh-HHHHHhcCCCCCeeeccCC
Confidence            99999999999987 4443333322 5899999999999976532         122223 7889999987777888885


Q ss_pred             CCCHHHHHHHHHHHHcCCc
Q 028239          163 QQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~~  181 (211)
                      ... .++|..|...+..+.
T Consensus       569 ~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  569 LSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCC-chHHHHHHHhhhCCC
Confidence            333 889999998888776

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.32  E-value=6e-13  Score=101.08  Aligned_cols=120  Identities=18%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCcCccccccccc--------cCCcEEEEEEECC---ChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCc
Q 028239           55 NLGLWDTAGQEDYSRLRPLSY--------RGADIFVLAFSLI---SRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL  122 (211)
Q Consensus        55 ~l~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl  122 (211)
                      .+.++|||||.++...|....        ...-++++++|..   ++..|-..   ++..+.... -+.|.|.|+||+|+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~---~L~s~s~~~~~~lP~vnvlsK~Dl  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS---LLLSLSIMLRLELPHVNVLSKIDL  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH---HHHHHHHHHHHTSEEEEEE--GGG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH---HHHHHHHHhhCCCCEEEeeeccCc
Confidence            456999999977665444322        3455788888874   44444433   111111111 38999999999999


Q ss_pred             ccCccccccccC------------CccccHHHHHHHHHHhCCc-eEEEecCCCCCCHHHHHHHHHHHH
Q 028239          123 REDRGYLADHVG------------SNVITTAQGEELRKQIGAA-AYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       123 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      .........+..            ...-......++...++.. .++.+|+++++++.+++..+-+.+
T Consensus       169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            763210000000            0000111122233333555 799999999999999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.31  E-value=3.3e-11  Score=90.33  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=94.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-------c----c
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-------R----P   72 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~----~   72 (211)
                      ++|+|+|..|+||||++|.+++........   +.+.........+++..  +.|+||||.......       .    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987433221   11223333444677854  569999995322211       0    1


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCcEEEEeeCCCcccCccccccccCCcccc---HHHHHHH
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLREDRGYLADHVGSNVIT---TAQGEEL  146 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~  146 (211)
                      ....+.|++++|+.+... +-.+  ...+..+.....   -..++||.|..|......  ..+    .+.   ....+++
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~--~~~----~l~~~~~~~l~~l  149 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDS--LED----YLKKESNEALQEL  149 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT--HHH----HHHHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecCcc-hHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccccc--HHH----HHhccCchhHhHH
Confidence            124578999999998832 3222  222233333221   235788889888655432  000    011   1234567


Q ss_pred             HHHhCCceEEEecCC------CCCCHHHHHHHHHHHHcCCc
Q 028239          147 RKQIGAAAYIECSSK------TQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       147 ~~~~~~~~~~~~sa~------~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .+..+. .|+..+.+      ....+.+|++.+-+.+.++.
T Consensus       150 i~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  150 IEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            777777 78887776      34568888888877776654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00258 GTP-binding protein; Provisional

Probab=99.31  E-value=7.7e-11  Score=94.95  Aligned_cols=84  Identities=20%  Similarity=0.145  Sum_probs=59.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDY   67 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~   67 (211)
                      ...++|.++|.|++|||||+|+|.+.. ....+++++.+.....+.+.+.               ...+.++|+||-..-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            456899999999999999999998765 4456667765555555554432               234789999995432


Q ss_pred             cc----cc---cccccCCcEEEEEEEC
Q 028239           68 SR----LR---PLSYRGADIFVLAFSL   87 (211)
Q Consensus        68 ~~----~~---~~~~~~~d~~i~v~d~   87 (211)
                      .+    +-   -..++.+|++++|+|.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~  125 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRA  125 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence            21    11   1136789999999997

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.31  E-value=4.2e-12  Score=103.43  Aligned_cols=161  Identities=26%  Similarity=0.397  Sum_probs=130.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .++|+.|+|..++|||+|+.+++.+.+.... ++.+..+.+.+.+++....+.+.|-+|...     ..|..++|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            4689999999999999999999999886654 445677778888888888888999988433     3467789999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |.+.+..+|+.+ ..+...+..+.  ..+|+++++++.-.....        .+.+....+.+++.++..+.||++++.+
T Consensus       103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen  103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence            999999999998 77766666444  578899999876443222        3457778888888888878999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.++...|+.+..+++..
T Consensus       174 Glnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999999988765

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.31  E-value=2.9e-11  Score=95.65  Aligned_cols=106  Identities=13%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.|+||+|...-..   .....+|.+++|.+...++..+.. ..  ..+     ...-++|+||.|+.....      
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~~~------  211 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNKTA------  211 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccchhH------
Confidence            6677999999753221   146679999999775555555544 11  111     122389999999875321      


Q ss_pred             CCccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          134 GSNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                       . .-...+........      +..|++.+||+++.|++++++.+.+.+.
T Consensus       212 -a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        212 -A-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             -H-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             0 01111222222211      2148999999999999999999999764

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.31  E-value=6e-12  Score=111.32  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=80.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------------eeeee---EEEEE--------------CCe
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------------FDNFS---ANVAV--------------DGS   52 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~------------~~~~~---~~~~~--------------~~~   52 (211)
                      .+.-+|+|+|+.++|||||+++|+...  ......+..            +..+.   ..+.+              ++.
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            345599999999999999999998543  111110000            00000   11111              123


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      .+.++++||||+.+|.......++.+|++|+|+|+.++-..+.. ..|... ...  +.|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~-~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHH-HHC--CCCEEEEEECCccc
Confidence            57788999999999988888888999999999999987665554 444433 333  79999999999986

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.31  E-value=1.4e-10  Score=92.88  Aligned_cols=143  Identities=16%  Similarity=0.191  Sum_probs=91.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC----CCC-------------CCCCC----ceeeee----eEEEE-ECCeEEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN----KFP-------------TDYIP----TVFDNF----SANVA-VDGSIVNLGL   58 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~----~~~-------------~~~~~----t~~~~~----~~~~~-~~~~~~~l~l   58 (211)
                      ..+-|.|+|+.++|||||+++|.+.    ...             ....+    |+...+    ...+. .++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3578999999999999999999987    222             22222    222222    11222 2456677889


Q ss_pred             EeCCCCcCcc--------c--c-------------------cccccc-CCcEEEEEE-ECC----ChhhHHHHHHHHHHH
Q 028239           59 WDTAGQEDYS--------R--L-------------------RPLSYR-GADIFVLAF-SLI----SRASYENVLKKWMPE  103 (211)
Q Consensus        59 ~D~~G~~~~~--------~--~-------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~  103 (211)
                      +||+|-..-.        .  +                   +...+. .+|+.|+|. |.+    .++.+.+....++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999932211        1  0                   122344 788888888 653    124456666888888


Q ss_pred             HhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239          104 LRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus       104 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +.+.  ++|++++.|+.|-...            .......++.++++. +++.+|+..
T Consensus       176 Lk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~  219 (492)
T TIGR02836       176 LKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVES  219 (492)
T ss_pred             HHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHH
Confidence            8887  9999999999994322            233444566677775 777777654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01882 BMS1 Bms1

Probab=99.30  E-value=4.9e-11  Score=90.22  Aligned_cols=142  Identities=15%  Similarity=0.065  Sum_probs=82.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ....|+++|.+|+|||||++.+.+..-........+. + ......  ...+.++||||.-  ..+ ....+.+|.+++|
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i-~i~~~~--~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I-TVVTGK--KRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E-EEEecC--CceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            4567999999999999999999865311111111111 1 111123  3556799999853  222 2236789999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCCcccCccccccccCCccccHHHHHH-HHH-HhCCceEEEecCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLREDRGYLADHVGSNVITTAQGEE-LRK-QIGAAAYIECSSK  161 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sa~  161 (211)
                      +|++......+  ..+...+...  +.|. ++|+||.|+.+....      ...+. ++.+. +.. .....+++.+||+
T Consensus       111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~~~~~-~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------LRKTK-KRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------HHHHH-HHHHHHHHHhhCCCCcEEEEeec
Confidence            99986554444  3344444443  5674 559999998643210      00011 11211 222 2233589999999


Q ss_pred             CCC
Q 028239          162 TQQ  164 (211)
Q Consensus       162 ~~~  164 (211)
                      +.-
T Consensus       180 ~~~  182 (225)
T cd01882         180 VHG  182 (225)
T ss_pred             cCC
Confidence            863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.29  E-value=4.9e-11  Score=89.12  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=86.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCC--------CCCC-Cceeeee----eEEEEEC-C-----------------
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP--------TDYI-PTVFDNF----SANVAVD-G-----------------   51 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~--------~~~~-~t~~~~~----~~~~~~~-~-----------------   51 (211)
                      .+....|.++|+.|+|||||+++++.....        .+.. .......    ...+... +                 
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            345678999999999999999998754110        0000 0000000    0111111 1                 


Q ss_pred             --eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239           52 --SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL  129 (211)
Q Consensus        52 --~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  129 (211)
                        ....+.++|+.|.-...   ..+....+..+.|+|+.+.+.....   ....+     ..|.++++||+|+.....  
T Consensus        99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~~-----~~a~iiv~NK~Dl~~~~~--  165 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YPGMF-----KEADLIVINKADLAEAVG--  165 (207)
T ss_pred             ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hHhHH-----hhCCEEEEEHHHccccch--
Confidence              12355678888821111   1111234556778888765432211   11111     467799999999975321  


Q ss_pred             ccccCCccccHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHHH
Q 028239          130 ADHVGSNVITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                              ....+..+..+..+ ..+++++||+++.|++++|+++.+.
T Consensus       166 --------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 --------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             --------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                    12233343344433 3589999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PTZ00416 elongation factor 2; Provisional

Probab=99.28  E-value=1.8e-11  Score=108.12  Aligned_cols=115  Identities=12%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------eeeee---------EEEEEC--------CeEEEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------FDNFS---------ANVAVD--------GSIVNLGLW   59 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~------~~~~~---------~~~~~~--------~~~~~l~l~   59 (211)
                      +.-+|+++|+.++|||||+++|+...  ......++.      .++..         ..+.++        +..+.+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            44599999999999999999998632  111111110      00000         111222        225678899


Q ss_pred             eCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           60 DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ||||+.+|.......++.+|++|+|+|+.+.-..+.. ..| ..+...  +.|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~-~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVL-RQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHH-HHHHHc--CCCEEEEEEChhhh
Confidence            9999998887777788999999999999887655543 334 333333  68999999999986

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.26  E-value=2.1e-11  Score=97.23  Aligned_cols=170  Identities=16%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCce--eeeee-EEEEECCeEEEEEEEeCCCCcC--ccc---cccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTV--FDNFS-ANVAVDGSIVNLGLWDTAGQED--YSR---LRPLSY   75 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~--~~~~~-~~~~~~~~~~~l~l~D~~G~~~--~~~---~~~~~~   75 (211)
                      ..++|+|+|.+|+|||||||+|.+-... +...+|.  .++.. ..+.... .-.+.+||.||-..  +..   +...-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4689999999999999999999764321 1222222  11111 1122211 11256999999532  211   112246


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc--cCccccccccCCccccHHHHHHH----HHH
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR--EDRGYLADHVGSNVITTAQGEEL----RKQ  149 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~----~~~  149 (211)
                      ...|.+|++.+    +.|......+...+.+.  +.|+.+|-+|.|..  ..++....... +.-..+++++.    .++
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~-~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFN-EEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT---HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccC-HHHHHHHHHHHHHHHHHH
Confidence            67898888766    23333324555667666  89999999999962  21110000000 00111222222    222


Q ss_pred             hCC--ceEEEecCCCC--CCHHHHHHHHHHHHcCCch
Q 028239          150 IGA--AAYIECSSKTQ--QNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       150 ~~~--~~~~~~sa~~~--~~v~~lf~~l~~~~~~~~~  182 (211)
                      .+.  .++|.+|+.+-  .++..|.+.|.+.+-..++
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence            232  47888999874  5688888888887766543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.23  E-value=6.8e-10  Score=88.58  Aligned_cols=82  Identities=22%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeE---------------EEEEEEeCCCCcCccc-
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSI---------------VNLGLWDTAGQEDYSR-   69 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~~-   69 (211)
                      ++|+++|.|++|||||+|++.+.. ....+++|+.+.....+.+.+..               ..+.+.|+||-..-.+ 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999876 34456666655544444444321               2578999999643221 


Q ss_pred             ---cc---cccccCCcEEEEEEECC
Q 028239           70 ---LR---PLSYRGADIFVLAFSLI   88 (211)
Q Consensus        70 ---~~---~~~~~~~d~~i~v~d~~   88 (211)
                         +-   -..++.+|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               11   11367899999999973

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.23  E-value=6e-10  Score=86.70  Aligned_cols=115  Identities=18%  Similarity=0.220  Sum_probs=67.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEeCCCCcCcc-----
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYS-----   68 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----------~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----   68 (211)
                      -.++|+|+|..|+|||||+|.|++.......          ..+. .......+.-++..+.+.|+||||-...-     
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999987633321          1111 12223344557889999999999921110     


Q ss_pred             ---------------------ccccc-cccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           69 ---------------------RLRPL-SYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        69 ---------------------~~~~~-~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                                           ..+.. .=...|+++++++.+.. -.-.++  ..+..+.   ..+++|-|+.|.|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls---~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLS---KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHT---TTSEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhc---ccccEEeEEecccccC
Confidence                                 00000 11347899999997653 222232  3334444   4689999999999754

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.21  E-value=7e-11  Score=85.27  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             EEEEEeCCCCcCc----cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239           55 NLGLWDTAGQEDY----SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL  120 (211)
Q Consensus        55 ~l~l~D~~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  120 (211)
                      .+.|+|+||-...    ...+..++..+|++|+|.+++...+-.+. ..+.+.....  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            3569999996432    24566678999999999999987665555 6666666655  44589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.18  E-value=3.3e-10  Score=81.58  Aligned_cols=103  Identities=16%  Similarity=0.067  Sum_probs=66.7

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      ..+.|++..|+=   .....+.-..+.-|+|+|++..+....-   -...+.    . .=++|+||.|+...-.      
T Consensus        97 ~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~K---~gP~i~----~-aDllVInK~DLa~~v~------  159 (202)
T COG0378          97 LDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPRK---GGPGIF----K-ADLLVINKTDLAPYVG------  159 (202)
T ss_pred             CCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCccc---CCCcee----E-eeEEEEehHHhHHHhC------
Confidence            456677777721   1111122233478999999887654321   000000    1 2389999999988754      


Q ss_pred             CCccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          134 GSNVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                          .+.+...+-+++.+. .+++++|+++|+|++++++++....
T Consensus       160 ----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         160 ----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             ----ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence                555666666666653 6999999999999999999987654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.15  E-value=4.4e-09  Score=78.59  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=108.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-------cccccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-------RLRPLS   74 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~   74 (211)
                      ++...||+++|-|.+|||||+..+.... -...|..|+.+.....+.+++..  +++.|.||--.-.       ...-..
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviav  136 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAV  136 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEE
Confidence            4556799999999999999999998765 34567778888888889999955  5599999942221       122335


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC----CC----------------------------------------
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA----PN----------------------------------------  110 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~----------------------------------------  110 (211)
                      .+-+|.+++|.|++..+.-..+++.=++.+--..    |+                                        
T Consensus       137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae  216 (364)
T KOG1486|consen  137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE  216 (364)
T ss_pred             eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce
Confidence            6889999999999876554433222222221111    22                                        


Q ss_pred             ----------------------CcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q 028239          111 ----------------------VPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKA  168 (211)
Q Consensus       111 ----------------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  168 (211)
                                            ++.+-|-||+|.               ++.++...+++..+.   +.+|+.-.-|++.
T Consensus       217 vl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~  278 (364)
T KOG1486|consen  217 VLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDR  278 (364)
T ss_pred             EEEecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHH
Confidence                                  244445555553               677888888888765   5678888899999


Q ss_pred             HHHHHHHHHcC
Q 028239          169 VFDTAIKVVLQ  179 (211)
Q Consensus       169 lf~~l~~~~~~  179 (211)
                      +++.+-..+--
T Consensus       279 lle~iWe~l~L  289 (364)
T KOG1486|consen  279 LLERIWEELNL  289 (364)
T ss_pred             HHHHHHHHhce
Confidence            99988887743

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.14  E-value=3.1e-10  Score=83.47  Aligned_cols=118  Identities=23%  Similarity=0.367  Sum_probs=79.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-----ccccccccCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-----RLRPLSYRGA   78 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-----~~~~~~~~~~   78 (211)
                      .-||+++|..|+|||++-..++.+...-+  ..+.+.+.....+.+-|. +.+.+||++|++.+-     ......++++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            35899999999999999888876553222  112111222222223222 568899999997432     3456679999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHH---HHHhhhCCCCcEEEEeeCCCcccC
Q 028239           79 DIFVLAFSLISRASYENVLKKWM---PELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      +++++|||++..+-..++ ..+-   +.+.+..|...+....+|.|+...
T Consensus        83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence            999999999887665555 4443   445555577778888999999764

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.3e-09  Score=89.81  Aligned_cols=159  Identities=14%  Similarity=0.081  Sum_probs=97.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC--------------------CCC----CCCCCce------eeeeeEEEEECCeE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN--------------------KFP----TDYIPTV------FDNFSANVAVDGSI   53 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~--------------------~~~----~~~~~t~------~~~~~~~~~~~~~~   53 (211)
                      ..++..+++|+.++|||||+.+++..                    +..    .....|.      ..-...+.+++-..
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            35789999999999999999988741                    100    0011111      11122344555566


Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---HHHH--HHHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---YENV--LKKWMPELRRFAPNVPIVLVGTKLDLREDRGY  128 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~--~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  128 (211)
                      ..+.|+|+||+..|-.........+|+.++|+|++..+-   |+.-  .......+ +...-..+||++||.|+..-...
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCcceEEEEeecccccCccHH
Confidence            788899999999988877778889999999999865321   1100  01111222 22234567999999999873220


Q ss_pred             cccccCCccccHHHHHHHH-HHhCC----ceEEEecCCCCCCHHHH
Q 028239          129 LADHVGSNVITTAQGEELR-KQIGA----AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~sa~~~~~v~~l  169 (211)
                           ... ........|. +..+.    +.|+.+|+..|+|+...
T Consensus       334 -----RF~-eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 -----RFE-EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             -----HHH-HHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                 000 0011122233 44443    47999999999997654

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=8.7e-10  Score=88.13  Aligned_cols=113  Identities=19%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCCCce---eee-eeEEEEECCeEEEEEEEeCCCCc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS--NKFPT---------------DYIPTV---FDN-FSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~--~~~~~---------------~~~~t~---~~~-~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      -..+||-+|.+|||||-..|+-  +.+..               ++....   +.. .+..+..+...+.+++.|||||+
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            4678999999999999988762  21100               111111   111 12233444445778899999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      +|...+...+..+|.+++|+|+...-.-+.  .++++..+.  .++|++-.+||.|..
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrl--R~iPI~TFiNKlDR~  146 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRL--RDIPIFTFINKLDRE  146 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhh--cCCceEEEeeccccc
Confidence            999888888999999999999877655444  345554443  499999999999953

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=2e-10  Score=95.77  Aligned_cols=116  Identities=22%  Similarity=0.280  Sum_probs=85.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CCCceeeeeeE---------EE---EECCeEEEEEEEeC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---------YIPTVFDNFSA---------NV---AVDGSIVNLGLWDT   61 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~---------~~---~~~~~~~~l~l~D~   61 (211)
                      +....+|.++|+-+.|||+|+..|.....+..         |+.+...+...         ++   ...++.+.++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34567899999999999999999987664332         11111111111         11   12468899999999


Q ss_pred             CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                      |||-.|.......++.+|++++|+|+.+.-.+..  +++++..-+  .+.|+++|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHH
Confidence            9999999988889999999999999999887776  333332222  37999999999994

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=2.9e-10  Score=97.75  Aligned_cols=116  Identities=18%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CC---CCCCC-----ce------eeee-e--EEEEECCeEEEEEEEeCCC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FP---TDYIP-----TV------FDNF-S--ANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~---~~~~~-----t~------~~~~-~--~~~~~~~~~~~l~l~D~~G   63 (211)
                      .++.-+|.++|+.++|||||..+++-..  +.   +...+     ..      +.+. +  .++...+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            3456799999999999999999997422  11   11100     00      1111 1  1233343 47788999999


Q ss_pred             CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      |-+|.......++-+|++++|+|+...-..+.- ..|.+... .  ++|.++++||+|..
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~-~--~vp~i~fiNKmDR~  141 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK-Y--GVPRILFVNKMDRL  141 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh-c--CCCeEEEEECcccc
Confidence            999999999999999999999999887665554 45554433 3  79999999999953

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.11  E-value=6.3e-10  Score=87.71  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH  132 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  132 (211)
                      .+.+.|+||+|.-...   ......+|.++++-...   +..++ ..+...+.    +.|.++|+||+|+......    
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~~----  190 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATNV----  190 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhHH----
Confidence            3677799999853211   22466788888885433   33443 23333332    5778999999998754210    


Q ss_pred             cCCccccHH---HHHHHHHH-hC-CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          133 VGSNVITTA---QGEELRKQ-IG-AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       133 ~~~~~~~~~---~~~~~~~~-~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                         ......   ....+... .+ ..+++.+||+++.|++++++++.+...
T Consensus       191 ---~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 ---TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             ---HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence               000000   00111111 11 126899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=3.9e-10  Score=86.80  Aligned_cols=165  Identities=18%  Similarity=0.148  Sum_probs=103.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC---CCC----------CCCCce----ee-----ee--eEEEEEC----CeEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK---FPT----------DYIPTV----FD-----NF--SANVAVD----GSIVN   55 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~---~~~----------~~~~t~----~~-----~~--~~~~~~~----~~~~~   55 (211)
                      +..++|.++|+..-|||||..+|.+--   +.+          .|..+.    .+     .+  .......    .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            357899999999999999999987521   111          011110    00     00  0011111    22355


Q ss_pred             EEEEeCCCCcCccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239           56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD  131 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  131 (211)
                      +.|.|+|||+-.-...-.-..-.|+.++|+.++.+    ++-+.+  .-++.+    .-..+|++=||.|+...+.    
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIi----gik~iiIvQNKIDlV~~E~----  157 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEII----GIKNIIIVQNKIDLVSRER----  157 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhh----ccceEEEEecccceecHHH----
Confidence            77999999987665444445567999999998763    333322  111222    1356788899999976432    


Q ss_pred             ccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCch
Q 028239          132 HVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                          -.-.++++.+|.+--.+  .|++.+||.++.|++.+++.|.+.+-.+.+
T Consensus       158 ----AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         158 ----ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             ----HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence                01233445555544422  499999999999999999999999876543

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.09  E-value=2.4e-09  Score=87.49  Aligned_cols=123  Identities=15%  Similarity=0.156  Sum_probs=81.2

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhhC-CCCcEEEEeeCCCc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS----------YENVLKKWMPELRRFA-PNVPIVLVGTKLDL  122 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl  122 (211)
                      ..+.++|.+|+...+..|..++.+++++|||+++++.+.          +.+.+..|-..+.... .+.|+||++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            456799999999999999999999999999999865322          4444344444444333 68999999999997


Q ss_pred             ccCccccc-------cccCCcc--ccHHHHHHHHHHh-----------CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          123 REDRGYLA-------DHVGSNV--ITTAQGEELRKQI-----------GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       123 ~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ....-...       ++.. +.  .+.+.+..+....           ..+.++.++|.+..++..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~-g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYT-GDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGG-SH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCC-CCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            54322111       1111 11  3344444443322           122466899999999999999887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.5e-09  Score=87.03  Aligned_cols=155  Identities=16%  Similarity=0.090  Sum_probs=103.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF----PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      -|+..|+..-|||||+..+.+..-    ...-.+++.+...+....++  +.+.|+|.||++++-+.....+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            477889999999999999987541    11223333332222333334  467799999999987766667778999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh--CCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI--GAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~  161 (211)
                      |++.++.-..+.. +.+ ..+.. ......++|+||+|..+...           ..+...++....  ...+++.+|+.
T Consensus        80 vV~~deGl~~qtg-EhL-~iLdl-lgi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~  145 (447)
T COG3276          80 VVAADEGLMAQTG-EHL-LILDL-LGIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAK  145 (447)
T ss_pred             EEeCccCcchhhH-HHH-HHHHh-cCCCceEEEEeccccccHHH-----------HHHHHHHHHhhcccccccccccccc
Confidence            9999776555543 222 22222 22445699999999876532           122222332222  23478999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 028239          162 TQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~  178 (211)
                      +|+|+++|.+.|....-
T Consensus       146 ~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         146 TGRGIEELKNELIDLLE  162 (447)
T ss_pred             cCCCHHHHHHHHHHhhh
Confidence            99999999999998874

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.2e-09  Score=81.84  Aligned_cols=165  Identities=16%  Similarity=0.171  Sum_probs=102.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC---C-------CCC-------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN---K-------FPT-------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~---~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ..+.+|..+|+.+-|||||..++..-   .       +..       ...+.+...-...+...+..|-  ..|+||+.+
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhya--hVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYA--HVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEE--eccCCChHH
Confidence            35789999999999999999877531   1       110       1111111111122333454444  899999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |-...-....+.|+.|+|+++++..-=+.. ++. .+-++.  ..|. ++++||+|+.++.+       .-..-..+.++
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi-Llarqv--Gvp~ivvflnK~Dmvdd~e-------llelVemEvre  156 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHI-LLARQV--GVPYIVVFLNKVDMVDDEE-------LLELVEMEVRE  156 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh-hhhhhc--CCcEEEEEEecccccCcHH-------HHHHHHHHHHH
Confidence            877665566789999999999987543332 221 122222  5654 67779999987543       11234466788


Q ss_pred             HHHHhCC----ceEEEecCCCC--------CCHHHHHHHHHHHHcCCc
Q 028239          146 LRKQIGA----AAYIECSSKTQ--------QNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       146 ~~~~~~~----~~~~~~sa~~~--------~~v~~lf~~l~~~~~~~~  181 (211)
                      +...++.    .|++.-||..-        ..+.+|++.+..++..+.
T Consensus       157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe  204 (394)
T COG0050         157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE  204 (394)
T ss_pred             HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence            8888875    46777666531        235667777666665543

>cd01855 YqeH YqeH

Probab=99.02  E-value=1.1e-09  Score=80.82  Aligned_cols=94  Identities=21%  Similarity=0.240  Sum_probs=65.3

Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      +..++..+++.+|++++|+|++++..-..      ..+.....+.|+++|+||+|+....           ........+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence            46677788999999999999988652111      1122222478999999999986532           223333333


Q ss_pred             H-----HHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          147 R-----KQIGA--AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       147 ~-----~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      .     +..+.  .+++.+||+++.|++++++.+.+.+
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3     22221  2689999999999999999999876

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.01  E-value=9.3e-09  Score=80.98  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      .+.++|.+++|+|+.+++.+......|+..+...  ++|+++|+||+|+.+..           ....+..+..+..+. 
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-  142 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-  142 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-
Confidence            3589999999999998876665547777766543  89999999999996332           112233344455665 


Q ss_pred             eEEEecCCCCCCHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +++.+||+++.|++++++.+..
T Consensus       143 ~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        143 DVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             eEEEEeCCCCccHHHHHhhccC
Confidence            8999999999999999987743

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.01  E-value=2.1e-09  Score=83.18  Aligned_cols=151  Identities=14%  Similarity=0.062  Sum_probs=82.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC--------CCCCCCceee--ee----eEEEEECC------------------
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--------PTDYIPTVFD--NF----SANVAVDG------------------   51 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--------~~~~~~t~~~--~~----~~~~~~~~------------------   51 (211)
                      ...+-|.|+|++|+|||||++++++.-.        ..+. .+..+  ..    ...+.++.                  
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~-~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L  180 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL  180 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc-CcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence            3456789999999999999988875421        1111 11100  00    01111110                  


Q ss_pred             --eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239           52 --SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL  129 (211)
Q Consensus        52 --~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  129 (211)
                        ....+.|+++.|+-....   .+--..+.-+.++++...+...   ..+-..+     ..+-++|+||+|+.....  
T Consensus       181 ~~~~~d~liIEnvGnLvcPa---~fdlge~~~v~vlsV~eg~dkp---lKyp~~f-----~~ADIVVLNKiDLl~~~~--  247 (290)
T PRK10463        181 PLDDNGILFIENVGNLVCPA---SFDLGEKHKVAVLSVTEGEDKP---LKYPHMF-----AAASLMLLNKVDLLPYLN--  247 (290)
T ss_pred             hhcCCcEEEEECCCCccCCC---ccchhhceeEEEEECccccccc---hhccchh-----hcCcEEEEEhHHcCcccH--
Confidence              123444777777411111   0111123345677776543211   1111112     355699999999975321  


Q ss_pred             ccccCCccccHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          130 ADHVGSNVITTAQGEELRKQI-GAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                              ...+...+..+.. ...+++.+||++|+|++++.+||...
T Consensus       248 --------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        248 --------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             --------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence                    2233333333333 34589999999999999999999764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.98  E-value=8e-09  Score=87.32  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-------c---c
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDY--IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-------L---R   71 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~---~   71 (211)
                      ..++|+|+|.+|+||||++|++++.. +....  ..|.. ........++  ..+.|+||||......       .   .
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            45799999999999999999999976 32221  22222 1222233455  4567999999654321       0   1


Q ss_pred             cccc--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccC
Q 028239           72 PLSY--RGADIFVLAFSLISRAS-YENVLKKWMPELRRFA---PNVPIVLVGTKLDLRED  125 (211)
Q Consensus        72 ~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~  125 (211)
                      ..++  ..+|++|+|..++.... .++  ..++..+....   .-..+|||.|+.|...+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            1122  25899999988764332 222  24444454443   13457999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=3.5e-08  Score=78.06  Aligned_cols=83  Identities=19%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC----------------CeEEEEEEEeCCCCcCc-
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVD----------------GSIVNLGLWDTAGQEDY-   67 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~----------------~~~~~l~l~D~~G~~~~-   67 (211)
                      .+++.|+|.|++|||||.|++..... ..+|+.++.+.......+.                -....+.++|.+|.-.- 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998774 3567777644433333222                13466789999984322 


Q ss_pred             ---ccccc---ccccCCcEEEEEEECC
Q 028239           68 ---SRLRP---LSYRGADIFVLAFSLI   88 (211)
Q Consensus        68 ---~~~~~---~~~~~~d~~i~v~d~~   88 (211)
                         ..+=.   ..++++|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               22212   2368999999999975

>smart00053 DYNc Dynamin, GTPase

Probab=98.97  E-value=4.8e-09  Score=79.59  Aligned_cols=69  Identities=19%  Similarity=0.122  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCCcCc---c----------cccccccc-CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239           54 VNLGLWDTAGQEDY---S----------RLRPLSYR-GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK  119 (211)
Q Consensus        54 ~~l~l~D~~G~~~~---~----------~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  119 (211)
                      ..|.++|+||-...   .          .+...+++ ..+++++|+|++...+-.+. ..+...+...  ..|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence            56789999997422   0          12334566 45689999998654333332 3444445444  7899999999


Q ss_pred             CCcccC
Q 028239          120 LDLRED  125 (211)
Q Consensus       120 ~Dl~~~  125 (211)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.94  E-value=5e-10  Score=84.47  Aligned_cols=153  Identities=14%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC------C-----CCCCCCCce----eee------------eeEEEEECC------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN------K-----FPTDYIPTV----FDN------------FSANVAVDG------   51 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~------~-----~~~~~~~t~----~~~------------~~~~~~~~~------   51 (211)
                      +.+.|.|-|+||+|||||++.|...      +     +.+..+.|.    ++.            |-..+...+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            4679999999999999999987531      1     111111121    111            111221111      


Q ss_pred             ------------eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239           52 ------------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK  119 (211)
Q Consensus        52 ------------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  119 (211)
                                  ..+.+.|++|.|--.-.   .....-+|.+++|....-.+..+.+ +.-+-++.       =|+|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~-KaGimEia-------Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAI-KAGIMEIA-------DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB--TTHHHH--------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHH-hhhhhhhc-------cEEEEeC
Confidence                        12556688888732211   1235679999999998877777766 33222332       2889999


Q ss_pred             CCcccCccccccccCCccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          120 LDLREDRGYLADHVGSNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .|....+.           ...+........      +..|++.+||.++.|++++++.|.++...
T Consensus       177 aD~~gA~~-----------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  177 ADRPGADR-----------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             -SHHHHHH-----------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CChHHHHH-----------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            99655432           222222222221      12489999999999999999999886544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.94  E-value=2.7e-08  Score=77.99  Aligned_cols=87  Identities=17%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             ccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           73 LSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ..+.++|.+++|+|+.++. ++..+ ..|+..+...  ++|+++|+||+|+.+..            .......+....+
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g  138 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALALG  138 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhCC
Confidence            3478999999999999987 77777 7787766654  79999999999996531            1112223334456


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHH
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      . +++.+||+++.|+++++..+..
T Consensus       139 ~-~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         139 Y-PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             C-eEEEEECCCCccHHHHHhhhcc
Confidence            5 8999999999999999987764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=98.94  E-value=2.5e-09  Score=76.29  Aligned_cols=92  Identities=13%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      ++...++++|++++|+|++++....+  ..+...+..  .+.|+++|+||+|+.....          .  .....+.+.
T Consensus         5 ~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~~~   68 (156)
T cd01859           5 LVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV----------L--EKWKSIKES   68 (156)
T ss_pred             HHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH----------H--HHHHHHHHh
Confidence            44556778999999999988654333  222222322  2689999999999854211          1  111123333


Q ss_pred             hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          150 IGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      .+. +++.+||+++.|++++++.+.+.+.
T Consensus        69 ~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          69 EGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             CCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            444 7899999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.89  E-value=2.6e-08  Score=76.45  Aligned_cols=154  Identities=12%  Similarity=0.057  Sum_probs=91.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC----C-------CCCCCCCcee----eeee------------EEEEECC------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN----K-------FPTDYIPTVF----DNFS------------ANVAVDG------   51 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~----~-------~~~~~~~t~~----~~~~------------~~~~~~~------   51 (211)
                      +...|.|-|.||+|||||+..|...    .       +.+..+.|.+    +...            ......+      
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            4568999999999999999877531    1       2222222221    1111            1111111      


Q ss_pred             ------------eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239           52 ------------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK  119 (211)
Q Consensus        52 ------------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  119 (211)
                                  -.+.+.|++|.|--.-.   .....-+|.+++|.=..-.+..+-+ +.-+-++..       |+|+||
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~i-K~GimEiaD-------i~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGI-KAGIMEIAD-------IIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHH-Hhhhhhhhh-------eeeEec
Confidence                        22666688888742211   2245568999999887777777776 333223322       889999


Q ss_pred             CCcccCccccccccCCccccHHH--HHH-----HHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          120 LDLREDRGYLADHVGSNVITTAQ--GEE-----LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .|....+.          .-.+.  +.+     +....+..|.+.+||.+|+|++++++.+.+....
T Consensus       199 aD~~~A~~----------a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         199 ADRKGAEK----------AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             cChhhHHH----------HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            99654321          11111  111     1112233588999999999999999999887644

>PRK12289 GTPase RsgA; Reviewed

Probab=98.87  E-value=2.1e-08  Score=80.36  Aligned_cols=92  Identities=20%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             cccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      +....+.++|.+++|+|+.++. +...+ ..|+.....  .++|+++|+||+|+.....            .....+...
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~  146 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ  146 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence            3344588999999999998876 34344 666655533  4899999999999964321            111222334


Q ss_pred             HhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          149 QIGAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       149 ~~~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ..+. +++.+||+++.|++++++.+...+
T Consensus       147 ~~g~-~v~~iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        147 QWGY-QPLFISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             hcCC-eEEEEEcCCCCCHHHHhhhhccce
Confidence            5566 899999999999999998886543

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=2.5e-08  Score=78.58  Aligned_cols=163  Identities=17%  Similarity=0.244  Sum_probs=100.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCce-----e-eeeeEEEEE----------CC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY------------------IPTV-----F-DNFSANVAV----------DG   51 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~------------------~~t~-----~-~~~~~~~~~----------~~   51 (211)
                      .+|++++|...+|||||+..|..+...+..                  .+..     + +.....+.+          +.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            569999999999999999888755432210                  0000     0 000111111          12


Q ss_pred             eEEEEEEEeCCCCcCcccccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccc-
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYR--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGY-  128 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-  128 (211)
                      ....+.++|.+|+.+|...+-..+.  -.|..++|++++..-....  +.-+..+...  ++|+.++.+|+|+.+.... 
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence            3355679999999999886655443  3678888888877654443  2333444555  8999999999999775211 


Q ss_pred             -c------------ccccCCccccHHHHHHHHHHh---CCceEEEecCCCCCCHHHHHHH
Q 028239          129 -L------------ADHVGSNVITTAQGEELRKQI---GAAAYIECSSKTQQNVKAVFDT  172 (211)
Q Consensus       129 -~------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~v~~lf~~  172 (211)
                       +            .....+..-+..++...+++.   +..|+|.+|+..|+|+.-+...
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence             0            111223333444554444443   4579999999999998855433

>cd01900 YchF YchF subfamily

Probab=98.85  E-value=7.7e-09  Score=79.98  Aligned_cols=79  Identities=19%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCccc---
Q 028239            9 CVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYSR---   69 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~~---   69 (211)
                      |+++|.|++|||||+|++.+... ...+++++.+.....+.+.+.               ...++++|+||-..-.+   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998763 445666665555555555443               23588999999643221   


Q ss_pred             -cccc---cccCCcEEEEEEEC
Q 028239           70 -LRPL---SYRGADIFVLAFSL   87 (211)
Q Consensus        70 -~~~~---~~~~~d~~i~v~d~   87 (211)
                       +-..   .++.+|++++|+|.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence             1111   35789999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.2e-08  Score=71.66  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=37.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      +++++|.+|+|||||+|++.+............+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999877543211111222233444544   3569999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.81  E-value=3.7e-08  Score=78.92  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=65.9

Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ..++|.+++|++.+...++..+ ..|+.....  .++|.++|+||+|+.....         ...........+..+. +
T Consensus       118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~  184 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R  184 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence            4569999999999887888888 888765543  3799999999999965321         0011222233345565 8


Q ss_pred             EEEecCCCCCCHHHHHHHHHHH
Q 028239          155 YIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      ++++||+++.|++++++.+...
T Consensus       185 v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        185 VLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEEEeCCCCcCHHHHHHHHhhC
Confidence            9999999999999999988754

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.80  E-value=1.4e-08  Score=82.05  Aligned_cols=96  Identities=23%  Similarity=0.393  Sum_probs=68.5

Q ss_pred             CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG  143 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  143 (211)
                      .+.|..+...+.+.++++++|+|+.+.+.      .|...+.+...+.|+++|+||+|+....           ...+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence            45677777778889999999999977552      2333333333478999999999986532           233333


Q ss_pred             H----HHHHHhCCc--eEEEecCCCCCCHHHHHHHHHHH
Q 028239          144 E----ELRKQIGAA--AYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       144 ~----~~~~~~~~~--~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .    ++++..+..  .++.+||+++.|++++|+.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            3    345555542  48999999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.80  E-value=1.1e-08  Score=80.78  Aligned_cols=166  Identities=15%  Similarity=0.093  Sum_probs=98.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---------------eeeeeEEEEEC------------------
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---------------FDNFSANVAVD------------------   50 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~---------------~~~~~~~~~~~------------------   50 (211)
                      ..++.|.+.|+.+.|||||+-.|.-+...+..-.+-               .+.....+-++                  
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            457899999999999999999887655433211110               00000011111                  


Q ss_pred             ---CeEEEEEEEeCCCCcCccccccc--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           51 ---GSIVNLGLWDTAGQEDYSRLRPL--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        51 ---~~~~~l~l~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                         ...-.+.+.|+.|++.|.+.+-.  +=.+.|..++|+.+++..+--.- +++ -.....  ..|++++.||+|+.++
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHL-gi~~a~--~lPviVvvTK~D~~~d  270 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHL-GIALAM--ELPVIVVVTKIDMVPD  270 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhh-hhhhhh--cCCEEEEEEecccCcH
Confidence               12245669999999998764433  44679999999999998765543 222 222222  8999999999998765


Q ss_pred             cccc------------ccccCCccccHHHH--HHHHHHh--CCceEEEecCCCCCCHHHHHHHH
Q 028239          126 RGYL------------ADHVGSNVITTAQG--EELRKQI--GAAAYIECSSKTQQNVKAVFDTA  173 (211)
Q Consensus       126 ~~~~------------~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l  173 (211)
                      ....            ......-.-+...+  ...+.+.  +.+|+|.+|+.+|+|++-|.+.+
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            4321            00000000011111  1112222  24789999999999998555444

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=4.4e-08  Score=72.79  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCCCceeeee-eEEEEECCeEEEEEEEeCCCCcC---c
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPT---------DYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED---Y   67 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~---------~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~---~   67 (211)
                      |..-..++|+|+|.+|.|||||+|.++......         .++.|..... ...+.-++...++.++||||--+   .
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            344567999999999999999999998654222         2222222222 23445578889999999999211   1


Q ss_pred             ccc-----------------------cccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           68 SRL-----------------------RPLSYR--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        68 ~~~-----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                      ...                       ++..+.  .++++++.+-.+. .++..+...+++.+.+.   ..+|-|+-|.|-
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIakaDt  196 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIAKADT  196 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEeeccc
Confidence            111                       222332  3567777766543 33333323333444433   556777778884

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.78  E-value=2.7e-07  Score=72.77  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=70.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCceee-eeeEEEEECCeEEEEEEEeCCCCcCc---cc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDY---SR   69 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----------~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~---~~   69 (211)
                      ...++|+++|+.|+|||||+|.|++....+..          .++... .....+.-++..+.|.++||||--++   ..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            35689999999999999999999987433321          122211 12223344678899999999992111   00


Q ss_pred             cc-----------------------cccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           70 LR-----------------------PLSY--RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        70 ~~-----------------------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      .|                       ...+  ..+|++++.+..+.. .+..+.-..+..+..   .+.+|=|+-|.|...
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT  176 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK---RVNLIPVIAKADTLT  176 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc---ccCeeeeeeccccCC
Confidence            11                       1011  236888888876432 222221234444444   577888889999643

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=2.1e-07  Score=73.74  Aligned_cols=115  Identities=20%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--------CCC-ce-eeeeeEEEEECCeEEEEEEEeCCCCcCc-c-----
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD--------YIP-TV-FDNFSANVAVDGSIVNLGLWDTAGQEDY-S-----   68 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~--------~~~-t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~-----   68 (211)
                      ..++++++|+.|.|||||+|.|+...+.+.        ... +. .......+.-+|..+.|+++||||--+. +     
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            458999999999999999999998754332        111 11 1122223344688899999999992111 0     


Q ss_pred             -------------------cccccccc--CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           69 -------------------RLRPLSYR--GADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        69 -------------------~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                                         ......+.  .+|++++.+..+.. -.-.++  ..+..+.   ..+++|-|+-|.|...
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~~Mk~l~---~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI--EFMKKLS---KKVNLIPVIAKADTLT  172 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--HHHHHHh---ccccccceeeccccCC
Confidence                               11111222  47888988886543 222232  3333343   3577788888999644

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.77  E-value=1.6e-08  Score=78.23  Aligned_cols=149  Identities=18%  Similarity=0.247  Sum_probs=95.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCCc---------Ccccccccc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQE---------DYSRLRPLS   74 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~---------~~~~~~~~~   74 (211)
                      ..-|.++|..++|||||++.|.... ++.+....+.+........ ++..  +.+-||.|.-         .|....+ -
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~ATLe-e  254 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQATLE-E  254 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE--EEEeechhhhhhCcHHHHHHHHHHHH-H
Confidence            4568999999999999999999655 3444444444444333333 3333  4488999831         1222222 2


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCc----EEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVP----IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      ...+|.++-|.|++.|+.-... ......++... +..|    ++=|-||.|......            ..      ++
T Consensus       255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e~------E~  315 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------EE------EK  315 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC------------cc------cc
Confidence            4579999999999999876655 55556666553 3333    455667777654321            11      11


Q ss_pred             hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          150 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +   .-+.+||++|+|++++.+.+-.+...
T Consensus       316 n---~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  316 N---LDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             C---CccccccccCccHHHHHHHHHHHhhh
Confidence            1   24679999999999999888776644

>cd01858 NGP_1 NGP-1

Probab=98.76  E-value=4.7e-08  Score=69.84  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=59.3

Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      .+.++|.+++|.|+.++..-.+  ..+...+.....+.|+++|+||+|+.....           .......+.+.+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence            3678999999999988743222  233344443334689999999999964321           12223333332222 


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ..+.+||+.+.|++++++.+.+.+
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            357799999999999999997754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1e-07  Score=74.22  Aligned_cols=167  Identities=16%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc----CC------CCC-------CCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS----NK------FPT-------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~----~~------~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      +..+.+|.-+|+..-|||||-.++..    ..      |.+       ...+.+.......+....+.|-  =.||||+.
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA  128 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA  128 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence            34678999999999999999987752    11      110       1111111111122222333333  68999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      +|-.....-..+.|+.|+|+.++|..-=+.- ++++  +.+...-..++|.+||.|+.++.+       ..++-+.++++
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RE  198 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRE  198 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHH
Confidence            9887666667889999999999997644433 3322  222222245678889999985533       12244566788


Q ss_pred             HHHHhCC----ceEEEecC---CCCC-------CHHHHHHHHHHHHcCCc
Q 028239          146 LRKQIGA----AAYIECSS---KTQQ-------NVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       146 ~~~~~~~----~~~~~~sa---~~~~-------~v~~lf~~l~~~~~~~~  181 (211)
                      +...++.    .|++.-||   .+|.       .|.+|++.+-.++..+.
T Consensus       199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~  248 (449)
T KOG0460|consen  199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE  248 (449)
T ss_pred             HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence            8888865    57777554   4553       25666666666555443

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.70  E-value=5.7e-08  Score=70.32  Aligned_cols=53  Identities=21%  Similarity=0.213  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G   63 (211)
                      .++++++|.||+|||||+|++.+...  ....++++..  ...+.++.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence            47999999999999999999998763  2233333322  22223332   366999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.69  E-value=7.2e-08  Score=68.85  Aligned_cols=54  Identities=20%  Similarity=0.127  Sum_probs=35.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G   63 (211)
                      ..++|+++|.+|+|||||+|+|.+...  .....+++..  ...+..+. .  +.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~-~--~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK-R--IYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC-C--EEEEECcC
Confidence            467899999999999999999998653  2233333221  12222322 2  45999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=7.6e-08  Score=75.78  Aligned_cols=118  Identities=20%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eeeeEEEEE------CC--------------------------
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAV------DG--------------------------   51 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~------~~--------------------------   51 (211)
                      ..-|+++|.=..||||+++.|+.+.++.-..+...  +.+...+.-      +|                          
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            35799999999999999999999988765444332  222211111      11                          


Q ss_pred             -------eEEEEEEEeCCCCc-----------CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE
Q 028239           52 -------SIVNLGLWDTAGQE-----------DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI  113 (211)
Q Consensus        52 -------~~~~l~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~  113 (211)
                             ..-.+.|+||||--           .|......|...+|.|+++||...-+--.+. ...++.++..  .-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence                   11346699999921           2233445577899999999998655444443 4445555544  3445


Q ss_pred             EEEeeCCCcccCc
Q 028239          114 VLVGTKLDLREDR  126 (211)
Q Consensus       114 ivv~nK~Dl~~~~  126 (211)
                      -||.||.|..+.+
T Consensus       215 RVVLNKADqVdtq  227 (532)
T KOG1954|consen  215 RVVLNKADQVDTQ  227 (532)
T ss_pred             EEEeccccccCHH
Confidence            6889999987754

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.62  E-value=4e-07  Score=72.00  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCC------------------CCCCceeeeee--------------------EEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPT------------------DYIPTVFDNFS--------------------ANV   47 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~------------------~~~~t~~~~~~--------------------~~~   47 (211)
                      +++|+++|...+|||||+..|.++...+                  ...+..+..+.                    ..-
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            5799999999999999998776544322                  11111111110                    000


Q ss_pred             EECCeEEEEEEEeCCCCcCcccccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           48 AVDGSIVNLGLWDTAGQEDYSRLRPLS--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        48 ~~~~~~~~l~l~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      .-.+....+.|+|.+|+++|...+-..  =+-.|..++++-++-.--.-.- +++ .+-...  .+|+.+|.+|+|....
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTK-EHL-gLALaL--~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTK-EHL-GLALAL--HVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccH-Hhh-hhhhhh--cCcEEEEEEeeccCcH
Confidence            011223456799999999998654322  2345666666654432211111 111 111112  7899999999998765


Q ss_pred             ccccccccCCccccHHH---HHHHHHHhC-------------------------CceEEEecCCCCCCHHHHHHH
Q 028239          126 RGYLADHVGSNVITTAQ---GEELRKQIG-------------------------AAAYIECSSKTQQNVKAVFDT  172 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------------~~~~~~~sa~~~~~v~~lf~~  172 (211)
                      +.           ..+-   ...+.++.+                         .+|+|.+|..+|+|+..|...
T Consensus       289 Ni-----------LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  289 NI-----------LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             HH-----------HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            42           2222   122222211                         368899999999999855433

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.62  E-value=3.4e-07  Score=65.24  Aligned_cols=84  Identities=13%  Similarity=0.036  Sum_probs=55.7

Q ss_pred             cEEEEEEECCChhhHHHHHHHHH-HHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           79 DIFVLAFSLISRASYENVLKKWM-PELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      |.+++|+|+.++.+....  .+. ..+..  .+.|+++|+||+|+.....           .......+..... ..++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence            689999999888665532  221 12222  3799999999999854321           1111222322323 37899


Q ss_pred             ecCCCCCCHHHHHHHHHHHHc
Q 028239          158 CSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +||+++.|++++++.+.+...
T Consensus        65 vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             EeccCCcChhhHHHHHHHHhH
Confidence            999999999999999987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=6.1e-07  Score=75.70  Aligned_cols=118  Identities=17%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeee-----------------------------------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDN-----------------------------------------   42 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~-----------------------------------------   42 (211)
                      .+.||++.|...+||||++|+++..++ +...-+++.-.                                         
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            568999999999999999999997663 22222221000                                         


Q ss_pred             ---eeEEEEECCe----EEEEEEEeCCCCc---CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc
Q 028239           43 ---FSANVAVDGS----IVNLGLWDTAGQE---DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP  112 (211)
Q Consensus        43 ---~~~~~~~~~~----~~~l~l~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  112 (211)
                         ..+.++-++.    .=.+.++|.||-+   ...+-...+..++|++|+|.++.+..+..+  ..++......  ++.
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CCc
Confidence               0011111110    0135588999953   333444557889999999999988777666  4554444444  556


Q ss_pred             EEEEeeCCCcccCc
Q 028239          113 IVLVGTKLDLREDR  126 (211)
Q Consensus       113 ~ivv~nK~Dl~~~~  126 (211)
                      +.++-||.|....+
T Consensus       264 iFIlnnkwDasase  277 (749)
T KOG0448|consen  264 IFILNNKWDASASE  277 (749)
T ss_pred             EEEEechhhhhccc
Confidence            67777888987653

>cd01856 YlqF YlqF

Probab=98.60  E-value=1.6e-07  Score=68.08  Aligned_cols=55  Identities=20%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      ..++++++|.+++|||||++++.+..+...  ..+++  .....+.++   ..+.+|||||-
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence            457999999999999999999998765322  22222  112223333   23679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.57  E-value=2.4e-07  Score=72.33  Aligned_cols=55  Identities=22%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      ..++++++|.||+|||||+|+|.+....  ...++++.  ....+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence            4689999999999999999999986632  22333222  223334433   3569999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.57  E-value=6.4e-06  Score=66.51  Aligned_cols=142  Identities=20%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-----------------CCC----CCCCceeeee----eEEEEE-CCeEEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK-----------------FPT----DYIPTVFDNF----SANVAV-DGSIVNLGLW   59 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~-----------------~~~----~~~~t~~~~~----~~~~~~-~~~~~~l~l~   59 (211)
                      .+=|.|+||..+|||||++||....                 ++.    ...-|+...|    ...+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            4568999999999999999997532                 111    1222222222    123444 4778999999


Q ss_pred             eCCCC--------cCc--ccc----c---------------cccccC--CcEEEEEEECC----ChhhHHHHHHHHHHHH
Q 028239           60 DTAGQ--------EDY--SRL----R---------------PLSYRG--ADIFVLAFSLI----SRASYENVLKKWMPEL  104 (211)
Q Consensus        60 D~~G~--------~~~--~~~----~---------------~~~~~~--~d~~i~v~d~~----~~~s~~~~~~~~~~~~  104 (211)
                      ||.|-        ..-  .++    |               ...++.  .-++++.-|-+    .++++.++.++.++.|
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            99981        110  001    1               001111  12555555532    2577888888889999


Q ss_pred             hhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239          105 RRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus       105 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ...  +.||++++|-.+-...            -+.+.+.++.++|+. +.+.+++..
T Consensus       177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~  219 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQ  219 (492)
T ss_pred             HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHH
Confidence            888  8999999998874433            466778888899987 888877764

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.54  E-value=3e-07  Score=64.48  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      .+..+|++++|+|+.++.+..+  ..+...+....++.|+++|+||+|+..+.            ......+..+..+. 
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~-   72 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI-   72 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC-
Confidence            4678999999999998876553  23333333322578999999999985432            12233344455554 


Q ss_pred             eEEEecCCCCCC
Q 028239          154 AYIECSSKTQQN  165 (211)
Q Consensus       154 ~~~~~sa~~~~~  165 (211)
                      .++.+||.++.+
T Consensus        73 ~ii~iSa~~~~~   84 (141)
T cd01857          73 VVVFFSALKENA   84 (141)
T ss_pred             eEEEEEecCCCc
Confidence            889999998753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.54  E-value=7.8e-08  Score=72.96  Aligned_cols=164  Identities=17%  Similarity=0.068  Sum_probs=87.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeE-EEEECCeEEEEEEEeCCCC----------cCccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSA-NVAVDGSIVNLGLWDTAGQ----------EDYSRLR   71 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~-~~~~~~~~~~l~l~D~~G~----------~~~~~~~   71 (211)
                      .+.++++++|..++|||+|++.++..+....... +.+..... .+.++   -.+.+.|.||-          ..+..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence            4568999999999999999999998763322222 22222221 12233   33558999991          1222334


Q ss_pred             cccccCCc---EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239           72 PLSYRGAD---IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        72 ~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      ..++.+-+   -+++.+|++-+-.-.+.  ..++.+.+.  +.|+.+|.||||...........-..++.  ...+.+.+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~--~~f~~l~~  284 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIK--INFQGLIR  284 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccce--eehhhccc
Confidence            44443322   34455565443221111  112334444  89999999999975432211000000000  00111111


Q ss_pred             Hh--CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          149 QI--GAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       149 ~~--~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      ..  ...|.+.+|+.++.|+++|+-.+.+.
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhhh
Confidence            11  11367789999999999887666543

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.53  E-value=9.5e-08  Score=70.75  Aligned_cols=129  Identities=15%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhhC--CCCcEEEEeeC
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RASYENVLKKWMPELRRFA--PNVPIVLVGTK  119 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK  119 (211)
                      ..+.+.+.|.+|+...+..|.+.+.++..+++.+.++.          ....++. ..++..+-.+.  .+.++|+..||
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence            44677899999999888899998888887777665533          2233333 33333333332  58999999999


Q ss_pred             CCcccCcccc------ccccCCccccHHHHHHHHHH----hCC-----ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          120 LDLREDRGYL------ADHVGSNVITTAQGEELRKQ----IGA-----AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       120 ~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .|+.++....      .++..-...+..-+++|.-+    .+.     ..-..++|.+-+|+..+|..+-..+++..
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            9986654321      11111122233334444332    222     12356889999999999998888776544

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=3.6e-07  Score=77.76  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCce------eeeee-------EEEEECCeEEEEEEEeCCCCcCcc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTV------FDNFS-------ANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~------~~~~~-------~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      +..-+|+++.+.+-|||||...|+...  +.....++.      .++..       ..+..-.+.+.++++|+|||-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            344589999999999999999997543  222222221      11111       223333356888899999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD  121 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  121 (211)
                      +......+-+|++++.+|+...-.-+.. ..+.+.+.   .+...++|+||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhh
Confidence            9999999999999999999776544443 22222222   2567799999999

>cd01859 MJ1464 MJ1464

Probab=98.53  E-value=4e-07  Score=64.87  Aligned_cols=55  Identities=24%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~D~~G   63 (211)
                      ...+++++|.+++|||||++++.+... ..+.++.+...... +..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997553 22223333333222 22332   477999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.52  E-value=4.9e-07  Score=70.94  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      ..++++++|.||+|||||+|+|.+...  ....++++..  ...+..++   .+.++||||-.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCcC
Confidence            458999999999999999999998763  2223333222  22333333   35699999973

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.50  E-value=1.4e-06  Score=65.70  Aligned_cols=88  Identities=17%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc------c-ccccccccCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY------S-RLRPLSYRGA   78 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~------~-~~~~~~~~~~   78 (211)
                      .+|.++|-|.+||||++..+.+.. ....|..|.-......+.+++  -++++.|.||--+-      + ...-...+-|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            489999999999999999988765 455667777777777777777  45679999994221      1 1223356789


Q ss_pred             cEEEEEEECCChhhHHHH
Q 028239           79 DIFVLAFSLISRASYENV   96 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~   96 (211)
                      +.+++|.|+..+-+...+
T Consensus       138 nli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             cEEEEEeeccCcccHHHH
Confidence            999999998776554443

>TIGR00092 GTP-binding protein YchF

Probab=98.48  E-value=8e-07  Score=71.27  Aligned_cols=82  Identities=18%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~~   69 (211)
                      +++.++|.|++|||||.+.+.+...  ...|+.++.+.....+.+.+.               ...+.+.|.||...-.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765  345666655555555555442               23567999999644221


Q ss_pred             ----c---ccccccCCcEEEEEEECC
Q 028239           70 ----L---RPLSYRGADIFVLAFSLI   88 (211)
Q Consensus        70 ----~---~~~~~~~~d~~i~v~d~~   88 (211)
                          .   .-..++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1   122468999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.46  E-value=4.6e-07  Score=72.09  Aligned_cols=57  Identities=21%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      ..++++|+|-|++|||||||+|.+............+.-...+.++..   +.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            458899999999999999999999875222211122222333444443   569999995

>cd01856 YlqF YlqF

Probab=98.44  E-value=1.1e-06  Score=63.65  Aligned_cols=87  Identities=17%  Similarity=0.124  Sum_probs=58.9

Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ...+.++|.+++|+|++++....+.  .+...    ..+.|+++|+||+|+.....          +  ....++.+...
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~----~~~k~~ilVlNK~Dl~~~~~----------~--~~~~~~~~~~~   75 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKI----LGNKPRIIVLNKADLADPKK----------T--KKWLKYFESKG   75 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCCh--hhHhH----hcCCCEEEEEehhhcCChHH----------H--HHHHHHHHhcC
Confidence            4457899999999999876543322  12222    23679999999999854311          1  11112223333


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      . .++.+||+++.|++++.+.+...+
T Consensus        76 ~-~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          76 E-KVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHH
Confidence            3 689999999999999999998876

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=98.42  E-value=5.2e-07  Score=66.46  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=22.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ..+++++|.+|+|||||+|+|++..
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.41  E-value=1.1e-06  Score=62.62  Aligned_cols=54  Identities=24%  Similarity=0.243  Sum_probs=36.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G   63 (211)
                      ...+++++|.+|+|||||+|++.+...  .....+++....  .+..+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence            457899999999999999999998652  222233332222  12222   2366999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.41  E-value=1.7e-05  Score=55.75  Aligned_cols=146  Identities=16%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---------------c-
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---------------S-   68 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------------~-   68 (211)
                      ..+||.+-|+||+||||++.++.+.--...  .+.+..+...+.-+++.+-|.+.|+...+..               . 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            468999999999999999988865322111  2334555566677788888888888731111               0 


Q ss_pred             ---c-------cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCcc
Q 028239           69 ---R-------LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNV  137 (211)
Q Consensus        69 ---~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  137 (211)
                         .       .....++.+|.+|  +|=--+-.+..  +.+.+.+.... ...|+|.+..+.+...             
T Consensus        82 ~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr~P-------------  144 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADVII--IDEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSRHP-------------  144 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccCCh-------------
Confidence               0       0122334567554  56444433333  45555565554 4778777776654311             


Q ss_pred             ccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          138 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                          ..+++ +..+. .++.   .+.+|=+.+++.+...+-
T Consensus       145 ----~v~~i-k~~~~-v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         145 ----LVQRI-KKLGG-VYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             ----HHHHh-hhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence                12222 33333 2333   444555588888877664

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=4.6e-07  Score=69.80  Aligned_cols=170  Identities=17%  Similarity=0.154  Sum_probs=100.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ce--eeeeeEEEEE------------------------
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TV--FDNFSANVAV------------------------   49 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~--t~--~~~~~~~~~~------------------------   49 (211)
                      |+++-.++|.-+|+.--||||+++++.+--   |-.+...  |.  +.-..+.+.-                        
T Consensus        33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c  112 (466)
T KOG0466|consen   33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC  112 (466)
T ss_pred             hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence            467778999999999999999999776421   1110000  00  0000011110                        


Q ss_pred             --CC------eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhhCCCCcEEEEe
Q 028239           50 --DG------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----RASYENVLKKWMPELRRFAPNVPIVLVG  117 (211)
Q Consensus        50 --~~------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~  117 (211)
                        .+      ....+.+.|+||++..-...-....-.|+.++.+..+.    +++-+.+  .-.+ +.+   -..++++-
T Consensus       113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL--aave-iM~---LkhiiilQ  186 (466)
T KOG0466|consen  113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL--AAVE-IMK---LKHIIILQ  186 (466)
T ss_pred             ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH--HHHH-Hhh---hceEEEEe
Confidence              00      12456699999998765543333344577777666543    2333332  0111 111   24578888


Q ss_pred             eCCCcccCccccccccCCccccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       118 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      ||.|+..+..        -....++++.|.+...+  .|++.+||.-.+|++.+.+.+++++-.+.+..
T Consensus       187 NKiDli~e~~--------A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf  247 (466)
T KOG0466|consen  187 NKIDLIKESQ--------ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF  247 (466)
T ss_pred             chhhhhhHHH--------HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence            9999976542        00122344555554432  49999999999999999999999997765443

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.37  E-value=1.7e-06  Score=67.55  Aligned_cols=85  Identities=22%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC---------------CeEEEEEEEeCCCCcCc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVD---------------GSIVNLGLWDTAGQEDY   67 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~l~l~D~~G~~~~   67 (211)
                      ...+++.|+|.|++|||||.|.+..... +..++.++.+.....+.+.               .....++++|++|...-
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            3578999999999999999999998763 4556655544443344332               25577899999995433


Q ss_pred             cc----c---ccccccCCcEEEEEEECC
Q 028239           68 SR----L---RPLSYRGADIFVLAFSLI   88 (211)
Q Consensus        68 ~~----~---~~~~~~~~d~~i~v~d~~   88 (211)
                      .+    +   .-..++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence            22    1   122468899999998863

>PRK13796 GTPase YqeH; Provisional

Probab=98.35  E-value=3.4e-06  Score=68.34  Aligned_cols=84  Identities=23%  Similarity=0.439  Sum_probs=57.3

Q ss_pred             cCCc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH----HHHHHh
Q 028239           76 RGAD-IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE----ELRKQI  150 (211)
Q Consensus        76 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  150 (211)
                      ...+ .+++|+|+.+..      ..|...+.+...+.|+++|+||+|+....           ...+...    .+++..
T Consensus        67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence            4445 889999988754      22333444434478999999999996532           2233333    334555


Q ss_pred             CC--ceEEEecCCCCCCHHHHHHHHHHH
Q 028239          151 GA--AAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       151 ~~--~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +.  ..++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            54  257899999999999999999765

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.35  E-value=5.7e-07  Score=63.89  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC------C-CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPT------D-YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~------~-~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      .++++|++|||||||+|.|+......      . ..+...+.....+..++..   .++||||-..+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            68999999999999999999874211      1 1111122223344453332   389999975543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.32  E-value=3.8e-06  Score=65.57  Aligned_cols=88  Identities=18%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ...+..+|++++|+|+.++.+..+  ..+...+    .+.|+++|+||+|+.+..           ........+ +..+
T Consensus        16 ~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~-----------~~~~~~~~~-~~~~   77 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPA-----------VTKQWLKYF-EEKG   77 (276)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHH-----------HHHHHHHHH-HHcC
Confidence            446789999999999987755443  1222222    268999999999985421           111111122 2334


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      . +++.+||+++.|++++.+.+.+.+.
T Consensus        78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        78 I-KALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            3 7899999999999999999888764

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.27  E-value=1.2e-05  Score=60.79  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC--CCCCC--CCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCcccc------ccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN--KFPTD--YIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYSRL------RPL   73 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~--~~~~~--~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~------~~~   73 (211)
                      ...-|.|+|++++|||+|+|.+++.  .|.-.  ..+++.........+. +....+.++||+|.......      .-.
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            3457899999999999999999998  54322  2222222221222221 22356779999996543321      111


Q ss_pred             cccC--CcEEEEEEECCCh
Q 028239           74 SYRG--ADIFVLAFSLISR   90 (211)
Q Consensus        74 ~~~~--~d~~i~v~d~~~~   90 (211)
                      .+..  ++.+|+..+....
T Consensus        86 ~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          86 ALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHhCEEEEeccCccc
Confidence            2223  7777777665543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.25  E-value=4.7e-06  Score=76.89  Aligned_cols=111  Identities=26%  Similarity=0.234  Sum_probs=64.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCC----CCc--eeeeeeEEEEECCeEEEEEEEeCCCCcC--------cccccccc
Q 028239            9 CVTVGDGAVGKTCMLICYTSNKFPTDY----IPT--VFDNFSANVAVDGSIVNLGLWDTAGQED--------YSRLRPLS   74 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~   74 (211)
                      .+|+|++|+||||++..- +-.++-..    ..+  .+....-..++.+.-+   ++|++|..-        ....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEE---EEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999866 33332211    001  1111122333444433   899999321        22234443


Q ss_pred             c---------cCCcEEEEEEECCCh-----hhH----HHHHHHHHHHHhhhC-CCCcEEEEeeCCCccc
Q 028239           75 Y---------RGADIFVLAFSLISR-----ASY----ENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE  124 (211)
Q Consensus        75 ~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~  124 (211)
                      +         +..+++|+++|+.+-     +..    ..+ ...+.++.+.. ...||.|++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            3         458999999997543     211    122 33334444333 6899999999999763

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.23  E-value=2e-06  Score=68.99  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++++|.+|+|||||+|+|++..
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            7899999999999999999764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.19  E-value=8.7e-06  Score=63.92  Aligned_cols=88  Identities=22%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ...+..+|++++|+|+.++.+...  ..+...+    .+.|+++|+||+|+.+..           ..... .++.+..+
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~-----------~~~~~-~~~~~~~~   80 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE-----------VTKKW-IEYFEEQG   80 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH-----------HHHHH-HHHHHHcC
Confidence            446789999999999988765443  2222222    268999999999985421           11111 22223334


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      . +++.+||+++.|++++.+.+.+.+.
T Consensus        81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         81 I-KALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            3 7899999999999999998887763

>PRK01889 GTPase RsgA; Reviewed

Probab=98.19  E-value=1.1e-05  Score=65.25  Aligned_cols=83  Identities=17%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-HhCCc
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-QIGAA  153 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  153 (211)
                      ..++|.+++|+++...-+...+ .+++......  +++.++|+||+||.+..             .+....+.. ..+ .
T Consensus       110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g-~  172 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPG-V  172 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCC-C
Confidence            5789999999999644444444 6666665554  78889999999997531             111122222 234 3


Q ss_pred             eEEEecCCCCCCHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAI  174 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~  174 (211)
                      +++.+|++++.|++++..++.
T Consensus       173 ~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        173 PVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             cEEEEECCCCccHHHHHHHhh
Confidence            889999999999999988874

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=1.4e-05  Score=66.55  Aligned_cols=111  Identities=16%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .++=|+|+||||+|||||++.|+..--...    ..+.......+.++...+.+.+||.  ....+.. ...-+|.+++.
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeEEE
Confidence            456788999999999999998876531111    1111111223556777888999993  2333322 35568999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCc
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDR  126 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  126 (211)
                      +|..-.-..+..  .+++.+...  ..| ++-|+|+.|+....
T Consensus       141 IdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         141 IDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             eccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence            998776656654  444554443  444 56788999997654

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.19  E-value=7.8e-06  Score=58.42  Aligned_cols=64  Identities=11%  Similarity=-0.030  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCCcCcccccc--------ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           54 VNLGLWDTAGQEDYSRLRP--------LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                      ....++|+||-........        ...-..+.+++++|+.+......-...+..++...    . ++|+||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a----d-~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA----D-RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC----C-EEEEecccC
Confidence            4556899999643222111        12335789999999765443221113444555433    2 668999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.17  E-value=7.8e-06  Score=61.82  Aligned_cols=71  Identities=18%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhh-CCCCcEEEEeeCCCc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA----------SYENVLKKWMPELRRF-APNVPIVLVGTKLDL  122 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl  122 (211)
                      +.|..+|.+|+..-+..|...+.++.++|+|...+...          .+++.+..+....... ...+.+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            66889999999999999999999999999998865421          1222211111111111 146889999999997


Q ss_pred             cc
Q 028239          123 RE  124 (211)
Q Consensus       123 ~~  124 (211)
                      ..
T Consensus       282 la  283 (379)
T KOG0099|consen  282 LA  283 (379)
T ss_pred             HH
Confidence            54

>PRK12289 GTPase RsgA; Reviewed

Probab=98.11  E-value=6.3e-06  Score=66.25  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|++|+|||||+|+|+...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            37999999999999999999754

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.07  E-value=6.6e-05  Score=59.68  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCCcCcccc--------c----cccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239           53 IVNLGLWDTAGQEDYSRL--------R----PLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTK  119 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~--------~----~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK  119 (211)
                      .+.+.|+||||.......        .    ...-...+..++|.|++... .+..+ ..    +...  -.+--+|.||
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~----f~~~--~~~~giIlTK  268 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KA----FHEA--VGLTGIILTK  268 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HH----HHhh--CCCCEEEEEC
Confidence            366779999996443221        0    00113467889999998643 23332 22    2211  1234788999


Q ss_pred             CCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239          120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf  170 (211)
                      .|....              ...+..++...+. |+..++  +|++++++-
T Consensus       269 lD~t~~--------------~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        269 LDGTAK--------------GGVVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            996543              2334555666676 888887  688887764

>PRK14974 cell division protein FtsY; Provisional

Probab=98.06  E-value=8.2e-06  Score=65.11  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCCcCccc-cc---ccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           54 VNLGLWDTAGQEDYSR-LR---PLS--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      +.+.|+||+|...... ..   ...  ....|..++|.|+.......+.    ...+...  -..--+|+||.|....- 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCc-
Confidence            4577999999754322 11   111  2357888999998765432222    1222221  12246789999986542 


Q ss_pred             ccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239          128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf  170 (211)
                                   .-+..++...+. |+..++  +|++++++.
T Consensus       296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLI  322 (336)
T ss_pred             -------------cHHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence                         223344445566 777776  688887765

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=1.3e-05  Score=67.09  Aligned_cols=113  Identities=18%  Similarity=0.116  Sum_probs=75.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-----CCC-CCCCce----------eeee-eEEEEECCeEEEEEEEeCCCCcCccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-----FPT-DYIPTV----------FDNF-SANVAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-----~~~-~~~~t~----------~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      -+|.+.-+-.+||||+-++.+-..     +.+ ....+.          +... +.-....-..+.++++|||||-+|.-
T Consensus        40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~  119 (721)
T KOG0465|consen   40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF  119 (721)
T ss_pred             cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence            367788888999999998876422     111 000111          0001 00011112357888999999999999


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ..+..++--|++++|++....-.-+.. ..|.+ ..++  ++|.|..+||.|..
T Consensus       120 EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  120 EVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRM  169 (721)
T ss_pred             EehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhc
Confidence            899999999999999998776555554 45543 3444  89999999999953

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.06  E-value=6.3e-06  Score=64.69  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -.++++|++|+|||||+|.|++..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999999865

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.05  E-value=5.6e-06  Score=67.99  Aligned_cols=57  Identities=18%  Similarity=0.104  Sum_probs=41.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      .+.|.+||.||+||||+||.|.+.+-+........+..-+++.+...   +.+.||||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence            58999999999999999999999985444333333444455555532   4599999963

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.05  E-value=9.7e-06  Score=62.96  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=35.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC------CCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK------FPTDY-IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~------~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      ..+++|++|+|||||+|+|....      +.... .+...+....-+..++..+   |+||||-..+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            56899999999999999998743      11111 1111233333445532222   89999976644

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.02  E-value=1.4e-05  Score=61.27  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|.+|+|||||+|+|.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            68899999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.00  E-value=3e-05  Score=60.33  Aligned_cols=93  Identities=13%  Similarity=0.061  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCCcCcccccc------------ccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239           54 VNLGLWDTAGQEDYSRLRP------------LSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKL  120 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~------------~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  120 (211)
                      +.+.|+||||....+...-            ..-..+|..++|.|++... .+..+     ..+.+..  .+--+|.||.
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-----~~f~~~~--~~~g~IlTKl  227 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-----KVFNEAV--GLTGIILTKL  227 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-----HHHHhhC--CCCEEEEEcc
Confidence            6677999999754332210            1122488999999997542 23322     2222221  2347889999


Q ss_pred             CcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239          121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf  170 (211)
                      |....-              ..+..+....+. |+..++  +|++++++-
T Consensus       228 De~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            986532              334455556666 777777  677777664

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=4.3e-06  Score=67.12  Aligned_cols=114  Identities=18%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--------CCCCCCCce--------e-eeeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--------FPTDYIPTV--------F-DNFSANVAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--------~~~~~~~t~--------~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      -+|.++....+||||.-.|++--.        ..+...-|.        + +..+.-+..+=+.+.++++||||+.+|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            478899999999999999886311        111111111        1 11122233333446777999999999999


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ..+..++-.|+++.|||.+-.-.-+.+ ..|.+.= +  .++|-+..+||+|...
T Consensus       118 everclrvldgavav~dasagve~qtl-tvwrqad-k--~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQAD-K--FKIPAHCFINKMDKLA  168 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCccccee-eeehhcc-c--cCCchhhhhhhhhhhh
Confidence            999999999999999999887777776 6675432 2  3799999999999754

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.98  E-value=6.3e-05  Score=61.80  Aligned_cols=66  Identities=14%  Similarity=0.002  Sum_probs=39.3

Q ss_pred             EEEEEEEeCCCCcCcccc-c---cc--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           53 IVNLGLWDTAGQEDYSRL-R---PL--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~-~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      .+.+.|+||||....+.. .   ..  ...+.+.+++|.|++......+.    ...+.+.  -.+--+|+||.|...
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCC
Confidence            467789999996443311 1   11  12357889999998765433322    1333322  235578899999754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13796 GTPase YqeH; Provisional

Probab=97.96  E-value=1.4e-05  Score=64.76  Aligned_cols=54  Identities=22%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-------PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      .++.++|.+|+|||||+|+|+....       ....++|+...  ..+.+++.   ..++||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999986431       12233333222  22233332   2499999963

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.95  E-value=1.5e-05  Score=64.54  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=35.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-------PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      .++.++|.+|+|||||+|++++...       ...+++|+....  .+..++.   +.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCC
Confidence            4799999999999999999997532       223333332221  2333222   4599999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.94  E-value=1.7e-05  Score=59.04  Aligned_cols=120  Identities=17%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             EEEEEEeCCCCcCccccc----c--ccccCCcEEEEEEEC------CChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCC
Q 028239           54 VNLGLWDTAGQEDYSRLR----P--LSYRGADIFVLAFSL------ISRASYENVLKKWMPELRRFA-PNVPIVLVGTKL  120 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  120 (211)
                      ....++|+|||-++-..+    .  ..++..+.=+.++++      +++..|-..   ++..+.... -..|=|=|..|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence            445599999985543211    1  123445544444443      556666553   112222222 367778889999


Q ss_pred             CcccCcccccc----------------------ccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          121 DLREDRGYLAD----------------------HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       121 Dl~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      |+...-.....                      ...+..-..+.+-.+.+.++.+.|...+-.+.+++-.+...|-++
T Consensus       174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkA  251 (290)
T KOG1533|consen  174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKA  251 (290)
T ss_pred             HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhc
Confidence            97554331100                      011111223445566777788788888888888888887776654

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.93  E-value=8.8e-05  Score=61.76  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             EEEEeCCCCc-------------CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           56 LGLWDTAGQE-------------DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        56 l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                      ..+.|.||.-             ..-++...+..+.+++|+|+--..-+.-......+...+...  +...|+|.+|.|+
T Consensus       414 MVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVDl  491 (980)
T KOG0447|consen  414 MVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVDL  491 (980)
T ss_pred             eEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecch
Confidence            4589999931             111234457789999999986433332222113333333322  7788999999999


Q ss_pred             ccCccccccccCCccccHHHHHHHHH
Q 028239          123 REDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      .+.+.          .++..++++..
T Consensus       492 AEknl----------A~PdRI~kIle  507 (980)
T KOG0447|consen  492 AEKNV----------ASPSRIQQIIE  507 (980)
T ss_pred             hhhcc----------CCHHHHHHHHh
Confidence            87643          55555555543

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=7.4e-05  Score=57.17  Aligned_cols=59  Identities=19%  Similarity=0.307  Sum_probs=44.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-----eEEEEECCeEEEEEEEeCCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----SANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~l~l~D~~G   63 (211)
                      ..++|+-+|..|.|||||++.|++..+.....+.....+     .+...-.+..+.+.+.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            468999999999999999999999987655433332222     22233357889999999998

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.90  E-value=6.1e-05  Score=43.45  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             CCcEEEEEEECCC--hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239           77 GADIFVLAFSLIS--RASYENVLKKWMPELRRFAPNVPIVLVGTKLD  121 (211)
Q Consensus        77 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  121 (211)
                      -.++++|++|++.  +-+.++. ..+++.++...++.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            4689999999964  4667777 678888888889999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=2.5e-05  Score=64.30  Aligned_cols=113  Identities=17%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CC----C--CCCCceeeeeeEEEEE-----------------------CCeEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FP----T--DYIPTVFDNFSANVAV-----------------------DGSIVN   55 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~----~--~~~~t~~~~~~~~~~~-----------------------~~~~~~   55 (211)
                      -++-++.+..-|||||-..|....  +.    .  .+..|-.++....+++                       ++..+.
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            367889999999999999998643  11    1  1122222222221111                       235688


Q ss_pred             EEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ++++|.||+-+|.+.....++-.|+.++|+|--+.--.+.- ..+.+.+.+.   +.-++++||.|..
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA  163 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA  163 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence            89999999999999999999999999999998776555543 3444445443   3336779999953

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.89  E-value=0.00019  Score=55.87  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      +..-...+.|-.++|+.+.+|+--..+..+++-.....  ++.-++++||.||.+...          ...++.......
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~  139 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREYED  139 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHHHh
Confidence            33334556888888889888864444336665554444  787888899999987643          221345556666


Q ss_pred             hCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          150 IGAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      .+. +.+.+|++++.+++++...+...+
T Consensus       140 ~gy-~v~~~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         140 IGY-PVLFVSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             CCe-eEEEecCcCcccHHHHHHHhcCCe
Confidence            776 899999999999999987776543

>PRK00098 GTPase RsgA; Reviewed

Probab=97.88  E-value=2.3e-05  Score=61.84  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||+|.|++..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999998764

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.84  E-value=0.0021  Score=45.99  Aligned_cols=143  Identities=8%  Similarity=0.037  Sum_probs=95.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |+......|+++|..+.++..|..++....-  .                   +.+++.-...-..- ......=...|.
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~-------------------~~l~Vh~a~sLPLp-~e~~~lRprIDl   67 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E-------------------FKLKVHLAKSLPLP-SENNNLRPRIDL   67 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c-------------------eeEEEEEeccCCCc-ccccCCCceeEE
Confidence            3455678999999999999999999986321  0                   11222222211100 001111234799


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|++|....-|++.+ +.-+..+.....-=.+.++.+.....+...          +...++.+++..++. |++.+.-
T Consensus        68 IVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~l  135 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADL  135 (176)
T ss_pred             EEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeec
Confidence            9999999999999998 555455544433334566666665544333          888999999999998 9999988


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028239          161 KTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~  177 (211)
                      .+.++...+-+.|.+.+
T Consensus       136 e~~~~~~~lAqRLL~~l  152 (176)
T PF11111_consen  136 ENEEGRTSLAQRLLRML  152 (176)
T ss_pred             ccchHHHHHHHHHHHHH
Confidence            88877777766666655

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=7e-05  Score=60.05  Aligned_cols=165  Identities=15%  Similarity=0.095  Sum_probs=92.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC-----------------------CCCCCCCceeeeee--EEE-----EECCe
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-----------------------FPTDYIPTVFDNFS--ANV-----AVDGS   52 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-----------------------~~~~~~~t~~~~~~--~~~-----~~~~~   52 (211)
                      +..+++++++|...+||||+-..++...                       +...+..|..+.-.  +++     ...-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3568899999999999999987664211                       01111111111100  111     11112


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---HHHHH-HHHHHHHhhhCCCCcEEEEeeCCCcccCccc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---YENVL-KKWMPELRRFAPNVPIVLVGTKLDLREDRGY  128 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  128 (211)
                      .-.+.+.|.||+..|-...-.-..+||.-++|.++.-.+-   |+.-. .+=...+.....-...|+++||+|-+.-+  
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn--  233 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN--  233 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC--
Confidence            2456699999998887766666788999999998743221   11100 01112233333355678999999976432  


Q ss_pred             cccccCCccccHHHHHHHHHHhCC-----ceEEEecCCCCCCHHHHHH
Q 028239          129 LADHVGSNVITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD  171 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~lf~  171 (211)
                       +...+..+ ..+....+.+..+.     ..|+++|..+|.++.+...
T Consensus       234 -Ws~eRy~E-~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 -WSNERYEE-CKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             -cchhhHHH-HHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             11111111 11222334443332     4689999999999887653

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.78  E-value=0.00023  Score=51.38  Aligned_cols=52  Identities=19%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT   61 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~   61 (211)
                      +|++-|++|+|||||+++++..--...  -.....+...+.-++..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEEC
Confidence            689999999999999998875421110  0112233333344555666666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.76  E-value=0.00012  Score=53.37  Aligned_cols=67  Identities=19%  Similarity=0.154  Sum_probs=39.1

Q ss_pred             EEEEEEeCCCCcCcccc--cccc---ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           54 VNLGLWDTAGQEDYSRL--RPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ....++++.|.......  ....   .-..+.++.|+|+.+..........+..++....     ++++||+|+...
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~  156 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSD  156 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCCh
Confidence            34557788885443333  0000   1246889999999776444444345555555432     788999998765

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00027  Score=57.25  Aligned_cols=138  Identities=15%  Similarity=0.053  Sum_probs=70.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCce-eeee---------------e-EEEEEC-----------CeEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTV-FDNF---------------S-ANVAVD-----------GSIVN   55 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~---~~~~~~t~-~~~~---------------~-~~~~~~-----------~~~~~   55 (211)
                      --++++|++|+||||++..|.....   ........ .+.+               . ......           -....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            4688999999999999988864321   00000000 0000               0 000010           02356


Q ss_pred             EEEEeCCCCcCccccc----cc--cccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCC--CcEEEEeeCCCcccCc
Q 028239           56 LGLWDTAGQEDYSRLR----PL--SYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPN--VPIVLVGTKLDLREDR  126 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~  126 (211)
                      +.++||+|....+...    ..  ......-.++|++++.. +...++...+......-...  .+-=+|.||.|.... 
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~-  296 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN-  296 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence            6799999966443221    11  12234456888898764 45555433333222110000  123577899997653 


Q ss_pred             cccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239          127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                                   .-.+..+....+. |+..++
T Consensus       297 -------------~G~~l~~~~~~~l-Pi~yvt  315 (374)
T PRK14722        297 -------------LGGVLDTVIRYKL-PVHYVS  315 (374)
T ss_pred             -------------ccHHHHHHHHHCc-CeEEEe
Confidence                         2345556666666 544443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.76  E-value=0.00021  Score=50.42  Aligned_cols=58  Identities=16%  Similarity=0.063  Sum_probs=36.4

Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD  121 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  121 (211)
                      .+.+.|+|++|...   ....++..+|.+++|...+-.+.+.-+  ++ ..+.     .-=++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~~-----~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI--KA-GIME-----IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh--hh-hHhh-----hcCEEEEeCCC
Confidence            46777999999542   223478899999999887743433332  11 2222     22378899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.00093  Score=50.54  Aligned_cols=170  Identities=15%  Similarity=0.208  Sum_probs=98.6

Q ss_pred             eEEEEECCCCC--CHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEE--EEEEeCCCCcCccccccccccCCcEEE
Q 028239            7 IKCVTVGDGAV--GKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVN--LGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         7 ~~I~viG~~~~--GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .-++|+|..|+  ||.+|+.+|....|.....+.....+. -.+++++-|.  +.+.=.+--+.+.--.........+++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            45789999998  999999999888776655444433332 1122222111  111111111111111122344567999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc--------------ccc-----------c-------
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR--------------GYL-----------A-------  130 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~-----------~-------  130 (211)
                      +|||++....+..+ +.|+.--....-++ .+.+|||.|...+.              .+.           .       
T Consensus        84 mvfdlse~s~l~al-qdwl~htdinsfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   84 MVFDLSEKSGLDAL-QDWLPHTDINSFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEEeccchhhhHHH-Hhhccccccccchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            99999998888887 88865322221122 35678999954320              000           0       


Q ss_pred             --cccCCccccHHHHHHHHHHhCCceEEEecCCCC------------CCHHHHHHHHHHHHcCC
Q 028239          131 --DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ------------QNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       131 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~------------~~v~~lf~~l~~~~~~~  180 (211)
                        -...........+.+|+.+.+. .|++.+|.+.            .||+.+|..+...+-..
T Consensus       162 llgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg  224 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG  224 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence              0011111333456788888888 9999998542            48999999888776543

>PRK13695 putative NTPase; Provisional

Probab=97.73  E-value=0.0012  Score=47.77  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ++|++.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998654

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.72  E-value=0.001  Score=52.97  Aligned_cols=99  Identities=16%  Similarity=0.040  Sum_probs=54.7

Q ss_pred             EEEEEEeCCCCcCccccccc-----c---ccCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPL-----S---YRGADIFVLAFSLISRASYEN-VLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ....++++.|-..-......     .   .-..|+++-|+|+........ ......+++.-.     =++++||.|+.+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCC
Confidence            33447888885433211111     1   224688999999876544332 223444444322     278899999987


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHH
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf  170 (211)
                      ..            ..+..+...++++. .+++.++.. +....+++
T Consensus       160 ~~------------~l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll  193 (323)
T COG0523         160 AE------------ELEALEARLRKLNPRARIIETSYG-DVDLAELL  193 (323)
T ss_pred             HH------------HHHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence            53            23344555555553 577877773 44444444

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00027  Score=58.08  Aligned_cols=102  Identities=12%  Similarity=0.079  Sum_probs=54.5

Q ss_pred             EEEEEEeCCCCcCcccc----cccc--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           54 VNLGLWDTAGQEDYSRL----RPLS--YRGADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                      ..+.++||+|.......    ...+  .....-.++|+|++. .....++    ...+..   --+-=+|+||.|.... 
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~----~~~f~~---~~~~~~I~TKlDEt~~-  341 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV----ISAYQG---HGIHGCIITKVDEAAS-  341 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH----HHHhcC---CCCCEEEEEeeeCCCC-
Confidence            45669999996543221    1111  123456778889874 4444443    222221   2233578999997653 


Q ss_pred             cccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH-HHHH----HHHHHHHcC
Q 028239          127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV-KAVF----DTAIKVVLQ  179 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v-~~lf----~~l~~~~~~  179 (211)
                                   .-.+..+....+. |+..++.  |.+| +++.    +.|++.++.
T Consensus       342 -------------~G~~l~~~~~~~l-Pi~yvt~--Gq~VP~Dl~~a~~~~lv~~ll~  383 (420)
T PRK14721        342 -------------LGIALDAVIRRKL-VLHYVTN--GQKVPEDLHEANSRYLLHRIFK  383 (420)
T ss_pred             -------------ccHHHHHHHHhCC-CEEEEEC--CCCchhhhhhCCHHHHHHHHhc
Confidence                         2445566667776 5554443  4555 3332    345555554

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.69  E-value=0.00056  Score=55.39  Aligned_cols=65  Identities=26%  Similarity=0.289  Sum_probs=36.7

Q ss_pred             EEEEEEEeCCCCcCccccc----ccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCCccc
Q 028239           53 IVNLGLWDTAGQEDYSRLR----PLSYR--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLRE  124 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~  124 (211)
                      .+.+.++||.|...++...    ..++.  ...-..+|++++...  .++ ...++.+..    .|+ -+++||.|...
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl-kei~~~f~~----~~i~~~I~TKlDET~  352 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL-KEIIKQFSL----FPIDGLIFTKLDETT  352 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH-HHHHHHhcc----CCcceeEEEcccccC
Confidence            3667799999987766422    12222  234556677776532  233 333333332    333 57789999754

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.0003  Score=59.16  Aligned_cols=90  Identities=19%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             EEEEEEEeCCCCcCcccccc------ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           53 IVNLGLWDTAGQEDYSRLRP------LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                      .+.+.|+||+|....+....      .... ....++|++.+.  +..++ ...+..+..   ..+.-+|+||.|...  
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl-~eii~~f~~---~~~~gvILTKlDEt~--  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDL-DEVVRRFAH---AKPQGVVLTKLDETG--  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHH-HHHHHHHHh---hCCeEEEEecCcCcc--
Confidence            36778999999644332100      0011 224566777654  23333 233333333   246679999999744  


Q ss_pred             cccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239          127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                                  ....+..+....+. |+..++.  |..|
T Consensus       499 ------------~lG~aLsv~~~~~L-PI~yvt~--GQ~V  523 (559)
T PRK12727        499 ------------RFGSALSVVVDHQM-PITWVTD--GQRV  523 (559)
T ss_pred             ------------chhHHHHHHHHhCC-CEEEEeC--CCCc
Confidence                        23555666667676 5555543  4444

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.61  E-value=0.0011  Score=52.73  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      =.+|.|.-|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3567899999999999999854

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.60  E-value=2.9e-05  Score=62.07  Aligned_cols=59  Identities=20%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G   63 (211)
                      +..++|.|.++|.|++||||+||+|...+.-...+-..++.+..-+..-...+   ++||||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIf---LIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIF---LIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhcee---EecCCC

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.00014  Score=66.26  Aligned_cols=113  Identities=21%  Similarity=0.105  Sum_probs=60.5

Q ss_pred             EEEECCCCCCHHHHHHHHhc-CCCCCCCCCce--eee-eeEEEEECCeEEEEEEEeCCCCcC--------cccccccc--
Q 028239            9 CVTVGDGAVGKTCMLICYTS-NKFPTDYIPTV--FDN-FSANVAVDGSIVNLGLWDTAGQED--------YSRLRPLS--   74 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~-~~~~~~~~~t~--~~~-~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~--   74 (211)
                      -+|||++|+||||++..--. -++.....-..  ... ..-.....+.   -.++||+|...        -...|..+  
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            37999999999999953211 11211111111  110 1111233333   33899999321        12244433  


Q ss_pred             -------ccCCcEEEEEEECCChh-----hHHHHHHHHH---HHHhhhC-CCCcEEEEeeCCCccc
Q 028239           75 -------YRGADIFVLAFSLISRA-----SYENVLKKWM---PELRRFA-PNVPIVLVGTKLDLRE  124 (211)
Q Consensus        75 -------~~~~d~~i~v~d~~~~~-----s~~~~~~~~~---~~~~~~~-~~~p~ivv~nK~Dl~~  124 (211)
                             .+..+++|+..|+.+--     .-......+.   .++.+.. -..||.|++||.|+..
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                   45689999999974421     1111112222   3333333 5899999999999865

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.57  E-value=8.1e-05  Score=59.56  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=37.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      .+.+++.|+|-|++||||+||+|..... +....+. .+..-+.+..+   -.+.|.|.||-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pG-vT~smqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPG-VTRSMQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCcc-chhhhhheecc---CCceeccCCce
Confidence            4679999999999999999999998774 2221111 11111223333   23569999994

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.00086  Score=58.89  Aligned_cols=105  Identities=18%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             EEEEEEeCCCCcCcccc----ccc--cccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           54 VNLGLWDTAGQEDYSRL----RPL--SYRGADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                      +.+.|+||+|....+..    ...  -....+-.++|.|++. .+.+.++    .+.+.....-.+-=+|+||.|.... 
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i----~~~f~~~~~~~i~glIlTKLDEt~~-  338 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV----VHAYRHGAGEDVDGCIITKLDEATH-  338 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH----HHHHhhcccCCCCEEEEeccCCCCC-
Confidence            45779999994332211    111  1234566788999875 3444444    2333321111233577999997653 


Q ss_pred             cccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH-HHHH----HHHHHHHcC
Q 028239          127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV-KAVF----DTAIKVVLQ  179 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v-~~lf----~~l~~~~~~  179 (211)
                                   .-.+..+....+. |+..++.  |.+| +++.    +.+++.++.
T Consensus       339 -------------~G~iL~i~~~~~l-PI~yit~--GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        339 -------------LGPALDTVIRHRL-PVHYVST--GQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             -------------ccHHHHHHHHHCC-CeEEEec--CCCChhhcccCCHHHHHHHHhc
Confidence                         2344556666666 6555543  5555 3333    445555554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.53  E-value=0.0002  Score=59.28  Aligned_cols=64  Identities=19%  Similarity=0.095  Sum_probs=37.0

Q ss_pred             EEEEEEeCCCCcCccccc----c--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSRLR----P--LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  124 (211)
                      +.+.|+||||........    .  .....+|.+++|+|++...   +. ......+..   ..+ .-+|.||.|...
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~~---~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFHE---AVGIGGIIITKLDGTA  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHHh---cCCCCEEEEecccCCC
Confidence            367799999965433210    0  1134688999999987653   22 112223332   233 357789999754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.49  E-value=0.00036  Score=50.57  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           79 DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      |++++|+|+.++.+..+  ..+.+.+.....+.|+|+|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            78999999988754332  2333332111236899999999999653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.47  E-value=0.00098  Score=49.99  Aligned_cols=47  Identities=15%  Similarity=0.162  Sum_probs=32.3

Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ..+.+|.+|+|.|.+- .++..+ ++..++-++. .-.++.+|.||.|..
T Consensus       152 ~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~  198 (255)
T COG3640         152 TIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence            4678999999999654 345555 4444444443 137899999999954

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.44  E-value=0.00066  Score=47.34  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=59.3

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCCh
Q 028239           11 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR   90 (211)
Q Consensus        11 viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   90 (211)
                      .-|.+|+|||++.-.+...--... ..+.....  ........+.+.++|+|+..  .......+..+|.++++.+.+ .
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~--D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDA--DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-P   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEC--CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-h
Confidence            456789999999755432110000 00000000  00000111667799999853  233345688999999999865 3


Q ss_pred             hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           91 ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        91 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      .++... ...++.+.+.....++.+|.|+.+..
T Consensus        79 ~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            445544 34445554444466788999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.41  E-value=0.00036  Score=54.31  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=35.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCC-------CCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-------DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      ..++.++|+|-||+|||||+|.+.......       ..++.+. .+...+.+..... +.+.||||-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~-~V~~~iri~~rp~-vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTR-RVSERIRISHRPP-VYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCcee-eehhheEeccCCc-eEEecCCCc
Confidence            457899999999999999999876533211       1111111 1122233433222 569999994

>PRK08118 topology modulation protein; Reviewed

Probab=97.40  E-value=0.00014  Score=52.41  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ||+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00014  Score=52.90  Aligned_cols=23  Identities=13%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .||+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PRK10867 signal recognition particle protein; Provisional

Probab=97.39  E-value=0.0011  Score=54.90  Aligned_cols=86  Identities=14%  Similarity=0.065  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCCcCcccc-c---cc--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           54 VNLGLWDTAGQEDYSRL-R---PL--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~-~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      +.+.|+||||....+.. .   ..  ..-..+.+++|.|........    .....+.+.. + ..-+|.||.|..... 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av----~~a~~F~~~~-~-i~giIlTKlD~~~rg-  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAV----NTAKAFNEAL-G-LTGVILTKLDGDARG-  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHH----HHHHHHHhhC-C-CCEEEEeCccCcccc-
Confidence            66779999995433211 0   00  112567789999986543222    2223333321 1 235677999964432 


Q ss_pred             ccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239          128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                                   -.+.......+. |+..++.
T Consensus       257 -------------G~alsi~~~~~~-PI~fig~  275 (433)
T PRK10867        257 -------------GAALSIRAVTGK-PIKFIGT  275 (433)
T ss_pred             -------------cHHHHHHHHHCc-CEEEEeC
Confidence                         235556666666 6655544

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.38  E-value=0.0019  Score=52.78  Aligned_cols=107  Identities=21%  Similarity=0.101  Sum_probs=57.4

Q ss_pred             EEEEEEEeCCCCcCcccc----cccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           53 IVNLGLWDTAGQEDYSRL----RPLSYR---GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~----~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      .+.+.++||+|....+..    ...++.   ...-.++|.|++...  .++ .   +.+..+..-.+-=+|+||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~-~---~~~~~~~~~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDV-K---EIFHQFSPFSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHH-H---HHHHHhcCCCCCEEEEEeccCCCc
Confidence            366779999996543311    111222   123578999987752  222 2   223333222244678999997553


Q ss_pred             ccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH-HHHH----HHHHHHHcCCch
Q 028239          126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV-KAVF----DTAIKVVLQPPR  182 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v-~~lf----~~l~~~~~~~~~  182 (211)
                                    .--+..++...+. |+..++.  |.+| +++.    ..+++.++....
T Consensus       328 --------------~G~~l~~~~~~~~-Pi~yit~--Gq~vPeDl~~~~~~~~~~~l~g~~~  372 (388)
T PRK12723        328 --------------VGNLISLIYEMRK-EVSYVTD--GQIVPHNISIAEPLTFIKKINGYRI  372 (388)
T ss_pred             --------------chHHHHHHHHHCC-CEEEEeC--CCCChhhhhhCCHHHHHHHhcCCCc
Confidence                          2345556666666 5544443  5555 3333    445565554433

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.37  E-value=0.00031  Score=51.74  Aligned_cols=69  Identities=16%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             CCcEEEEeeCCCcccCcccc-------------ccccCCcccc------HHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q 028239          110 NVPIVLVGTKLDLREDRGYL-------------ADHVGSNVIT------TAQGEELRKQIGAAAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       110 ~~p~ivv~nK~Dl~~~~~~~-------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf  170 (211)
                      .+|-|=|.+|.||.....+.             ........-+      ...+.++...++.+.|+.....+.++++.++
T Consensus       164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL  243 (273)
T KOG1534|consen  164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL  243 (273)
T ss_pred             cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence            78889999999987652210             0001111111      1223455667788899999999999999998


Q ss_pred             HHHHHHHc
Q 028239          171 DTAIKVVL  178 (211)
Q Consensus       171 ~~l~~~~~  178 (211)
                      ..|-.++.
T Consensus       244 ~~ID~aiQ  251 (273)
T KOG1534|consen  244 SYIDDAIQ  251 (273)
T ss_pred             HHHHHHHH
Confidence            88776663

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.36  E-value=0.0016  Score=54.49  Aligned_cols=21  Identities=24%  Similarity=0.234  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++++|+.|+||||++..|..
T Consensus       258 Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        258 VFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999987764

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.35  E-value=0.00017  Score=48.84  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>PRK07261 topology modulation protein; Provisional

Probab=97.31  E-value=0.00021  Score=51.74  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ||+|+|++|+|||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999988643

>TIGR00959 ffh signal recognition particle protein

Probab=97.28  E-value=0.0013  Score=54.49  Aligned_cols=86  Identities=15%  Similarity=0.076  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCCcCcccc-cc---c--cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           54 VNLGLWDTAGQEDYSRL-RP---L--SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      +.+.|+||||....+.. ..   .  ..-..+.+++|+|+....   +. ..+...+.... + ..=+|.||.|..... 
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~-~~~a~~f~~~v-~-i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DA-VNTAKTFNERL-G-LTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HH-HHHHHHHHhhC-C-CCEEEEeCccCcccc-
Confidence            56779999996443221 10   0  123578889999987543   32 23334443322 2 235679999964432 


Q ss_pred             ccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239          128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                                   ..+..++...+. |+..+..
T Consensus       256 -------------G~~lsi~~~~~~-PI~fi~~  274 (428)
T TIGR00959       256 -------------GAALSVRSVTGK-PIKFIGV  274 (428)
T ss_pred             -------------cHHHHHHHHHCc-CEEEEeC
Confidence                         235666677776 6665544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.27  E-value=0.00021  Score=49.79  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+++|+||||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998743

...

>TIGR00235 udk uridine kinase

Probab=97.26  E-value=0.00035  Score=52.16  Aligned_cols=29  Identities=24%  Similarity=0.098  Sum_probs=25.6

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |-+.+..-|+|+|++|+|||||++.+.+.
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            66777888999999999999999999764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.24  E-value=0.0014  Score=45.20  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      .--+++.|++|+|||+|++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999887653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.23  E-value=0.00039  Score=41.11  Aligned_cols=21  Identities=19%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -.+|.|+.|+|||||++++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999987754

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.21  E-value=0.00043  Score=50.02  Aligned_cols=29  Identities=17%  Similarity=0.102  Sum_probs=25.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+.....-+.|+|++|+|||||+.++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            66667778999999999999999998765

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.21  E-value=0.00042  Score=51.77  Aligned_cols=29  Identities=24%  Similarity=0.160  Sum_probs=24.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |...+...|+|.|++|||||||.+.|...
T Consensus         1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            33456899999999999999999988764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.19  E-value=0.00033  Score=51.90  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++||+|||||||++++.+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            58999999999999999997654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.17  E-value=0.00023  Score=51.02  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.15  E-value=0.0051  Score=51.00  Aligned_cols=89  Identities=19%  Similarity=0.121  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCCcCccc----ccccccc---CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           54 VNLGLWDTAGQEDYSR----LRPLSYR---GADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~----~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      +.+.|+||||....+.    ....++.   ...-.++|++++-. ..+.++    ...+...  + +--++.||.|....
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~----~~~f~~~--~-~~~vI~TKlDet~~  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI----YKHFSRL--P-LDGLIFTKLDETSS  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH----HHHhCCC--C-CCEEEEeccccccc
Confidence            5677999999754431    1111222   33466778887543 334433    2333321  1 23688999997542


Q ss_pred             ccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239          126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                                    ...+..+....+. |+..++.  |.+|
T Consensus       373 --------------~G~i~~~~~~~~l-Pv~yit~--Gq~V  396 (424)
T PRK05703        373 --------------LGSILSLLIESGL-PISYLTN--GQRV  396 (424)
T ss_pred             --------------ccHHHHHHHHHCC-CEEEEeC--CCCC
Confidence                          2346667777777 5555443  4444

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.15  E-value=0.00047  Score=41.93  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.09  E-value=0.0041  Score=39.80  Aligned_cols=69  Identities=22%  Similarity=0.204  Sum_probs=43.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-ccccccCCcEEEEEEEC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-RPLSYRGADIFVLAFSL   87 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~   87 (211)
                      +++.|.+|+|||++...+...--...+         +...++    .+.++|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999776543211110         112222    4569999986543321 13456678999999886


Q ss_pred             CCh
Q 028239           88 ISR   90 (211)
Q Consensus        88 ~~~   90 (211)
                      +..
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.06  E-value=0.00065  Score=51.51  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=23.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |.-...++|+|+|+|||||||+...|..
T Consensus         1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          1 MKLKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            4445668999999999999999998865

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.05  E-value=0.011  Score=47.69  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+|.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.05  E-value=0.00055  Score=46.81  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            7899999999999999887653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.03  E-value=0.0028  Score=41.63  Aligned_cols=82  Identities=12%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             EEEEC-CCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            9 CVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         9 I~viG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      |++.| ..|+||||+...+...--... .++..      +.. +..+.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~------~d~-d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL------IDL-DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE------EeC-CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56777 569999999865543211000 01110      001 111567799999864322  22567789999999885


Q ss_pred             CChhhHHHHHHHHHH
Q 028239           88 ISRASYENVLKKWMP  102 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~  102 (211)
                      + ..++..+ ..+.+
T Consensus        72 ~-~~s~~~~-~~~~~   84 (104)
T cd02042          72 S-PLDLDGL-EKLLE   84 (104)
T ss_pred             C-HHHHHHH-HHHHH
Confidence            4 4456555 45544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK14530 adenylate kinase; Provisional

Probab=97.03  E-value=0.0007  Score=50.87  Aligned_cols=21  Identities=14%  Similarity=0.185  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.02  E-value=0.0008  Score=49.40  Aligned_cols=24  Identities=8%  Similarity=0.097  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .=|+|+|++|+|||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448999999999999999998753

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.00  E-value=0.00069  Score=51.48  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=22.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.00  E-value=0.00062  Score=51.18  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -|+|+|++|||||||++.+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3789999999999999988553

>PRK06217 hypothetical protein; Validated

Probab=96.99  E-value=0.00068  Score=49.58  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+|+|+|.+|||||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988754

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.98  E-value=0.0011  Score=49.46  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +..-|+|+|++|+|||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4556889999999999999999754

>PRK14527 adenylate kinase; Provisional

Probab=96.97  E-value=0.00089  Score=49.32  Aligned_cols=28  Identities=18%  Similarity=0.156  Sum_probs=23.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |+.++..-|+++|+||+||||+...+..
T Consensus         1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5556677899999999999999998864

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.96  E-value=0.0058  Score=44.38  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=57.5

Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD  131 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  131 (211)
                      ..+.+.|+|+|+...-  .....+..+|.++++...+. .+...+ ..+.+.+...  +.|+.+|+|+.|....      
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------  158 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------  158 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence            3467889999975321  22345688999999999774 355555 6666666654  6778899999986432      


Q ss_pred             ccCCccccHHHHHHHHHHhCCceEE
Q 028239          132 HVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                             ...+..++.+..+. +++
T Consensus       159 -------~~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         159 -------IAEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             -------hHHHHHHHHHHcCC-CeE
Confidence                   23456677777776 544

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.95  E-value=0.00087  Score=45.90  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFP   32 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~   32 (211)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.95  E-value=0.011  Score=45.98  Aligned_cols=85  Identities=16%  Similarity=0.063  Sum_probs=46.7

Q ss_pred             EEEEEEEeCCCCcCcccc----cccc--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           53 IVNLGLWDTAGQEDYSRL----RPLS--YRGADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      .+.+.++||||....+..    +..+  ....+-.++|.|++. .....+.    ...+..   -.+-=++.||.|....
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~----~~~f~~---~~~~~~I~TKlDet~~  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI----ITNFKD---IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH----HHHhCC---CCCCEEEEEeecCCCC
Confidence            356779999997543321    1111  124567899999764 3333332    233332   1233577999997653


Q ss_pred             ccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239          126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      -              -.+..++...+. |+..++
T Consensus       227 ~--------------G~~l~~~~~~~~-Pi~~it  245 (270)
T PRK06731        227 S--------------GELLKIPAVSSA-PIVLMT  245 (270)
T ss_pred             c--------------cHHHHHHHHHCc-CEEEEe
Confidence            2              334455566665 554443

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.93  E-value=0.00079  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999887764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.0008  Score=50.93  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+++|++|+|||||++-+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999988763

>PRK03839 putative kinase; Provisional

Probab=96.91  E-value=0.00084  Score=48.90  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +|+++|.||+||||+.+.+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988654

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.88  E-value=0.00083  Score=45.73  Aligned_cols=21  Identities=19%  Similarity=0.063  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988765

...

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.86  E-value=0.00098  Score=46.57  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|+.++|||||+..|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.85  E-value=0.0011  Score=46.19  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.84  E-value=0.001  Score=48.76  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .|+|+|++|+|||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999996653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.83  E-value=0.0011  Score=48.30  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988665

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.83  E-value=0.0011  Score=48.56  Aligned_cols=22  Identities=18%  Similarity=0.031  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.81  E-value=0.0012  Score=43.71  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 028239            8 KCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~   27 (211)
                      -++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14532 adenylate kinase; Provisional

Probab=96.81  E-value=0.0011  Score=48.56  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +|+++|+|||||||+..+|...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988653

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.81  E-value=0.0015  Score=48.58  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      --|+|+|++|+|||||++.+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999988765

>PRK13949 shikimate kinase; Provisional

Probab=96.79  E-value=0.0013  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +|+|+|++|+||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999977643

>PRK01889 GTPase RsgA; Reviewed

Probab=96.78  E-value=0.0014  Score=53.11  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            378999999999999999998754

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.78  E-value=0.047  Score=43.42  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .-.|++.|+.|+|||||++.+++..
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~  168 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEI  168 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccC
Confidence            3589999999999999999988654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.77  E-value=0.0012  Score=47.12  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 028239            7 IKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~   27 (211)
                      ++|+|.|.||+||||++++|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999987

>PRK14531 adenylate kinase; Provisional

Probab=96.76  E-value=0.0014  Score=48.00  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+|+++|+|||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988553

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.76  E-value=0.0013  Score=47.77  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -|+|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.001  Score=46.35  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...+|+|.|.||+|||||..++..
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHH
Confidence            457999999999999999999874

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.75  E-value=0.0011  Score=45.99  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+++|++|+|||+|+..+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999977653

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.72  E-value=0.0014  Score=48.54  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08233 hypothetical protein; Provisional

Probab=96.71  E-value=0.0018  Score=47.08  Aligned_cols=24  Identities=17%  Similarity=-0.015  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            366888999999999999999764

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.71  E-value=0.0013  Score=48.39  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +|+|+|+|||||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.70  E-value=0.0017  Score=47.48  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+|+|+|+||+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>PHA00729 NTP-binding motif containing protein

Probab=96.70  E-value=0.0017  Score=48.81  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...+|+|.|+||+|||+|..++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999988764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.69  E-value=0.0017  Score=47.65  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -.++++|++|+|||||++.+++-.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01351 adk adenylate kinases

Probab=96.68  E-value=0.0014  Score=49.09  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      ||+|+|+|||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.0016  Score=48.98  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999877

>PLN02200 adenylate kinase family protein

Probab=96.67  E-value=0.0023  Score=48.77  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..+.|+|+|+|||||||+...|...
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~   66 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVET   66 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.67  E-value=0.0017  Score=47.40  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+++|+|||||||+...+...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988653

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.65  E-value=0.0017  Score=49.85  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      ++++||.|+|||||++++.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999873

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.65  E-value=0.002  Score=46.88  Aligned_cols=20  Identities=20%  Similarity=0.155  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 028239            8 KCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~   27 (211)
                      .++++|+.|+|||||++.++
T Consensus        23 ~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.63  E-value=0.0018  Score=48.08  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      |+|.|++|+||||+++.+.+..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06547 hypothetical protein; Provisional

Probab=96.62  E-value=0.0024  Score=46.29  Aligned_cols=27  Identities=19%  Similarity=0.266  Sum_probs=22.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ......|+|.|++|||||||.+.|...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345678899999999999999998754

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.60  E-value=0.011  Score=47.72  Aligned_cols=27  Identities=26%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFP   32 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~   32 (211)
                      ..+|+|.|+.|+|||||++.+++.-.+
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccCC
Confidence            467999999999999999999876543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.60  E-value=0.0015  Score=47.27  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -.=+++.||+|+|||||++.|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3458899999999999999998765

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.59  E-value=0.0026  Score=46.10  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -+|+++|++|+||||+...+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999988754

>PLN02674 adenylate kinase

Probab=96.59  E-value=0.0023  Score=48.94  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...+|+++|+||+||+|+...|..
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998865

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.59  E-value=0.0028  Score=46.12  Aligned_cols=23  Identities=22%  Similarity=0.188  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999988764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.59  E-value=0.0018  Score=48.87  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |.|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            679999999999999988764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.58  E-value=0.0035  Score=49.09  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      +-..++++|++|.|||+++++|...-
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHC
Confidence            44579999999999999999998744

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK00625 shikimate kinase; Provisional

Probab=96.58  E-value=0.0022  Score=46.54  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +|+++|.+|+||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.58  E-value=0.0022  Score=46.45  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||+|-+.+=
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhc
Confidence            6899999999999999987653

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.55  E-value=0.0023  Score=48.03  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.55  E-value=0.0068  Score=48.65  Aligned_cols=28  Identities=14%  Similarity=0.042  Sum_probs=23.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPT   33 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~   33 (211)
                      ..+|+|.|++|+|||||++.++......
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~  187 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAI  187 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            4689999999999999999998755433

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.55  E-value=0.0019  Score=44.20  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|.|++|+|||++++.+....
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=96.54  E-value=0.0045  Score=49.18  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      .+|++.|..|+|||||+|.|..-..
T Consensus       174 ~NILisGGTGSGKTTlLNal~~~i~  198 (355)
T COG4962         174 CNILISGGTGSGKTTLLNALSGFID  198 (355)
T ss_pred             eeEEEeCCCCCCHHHHHHHHHhcCC
Confidence            5899999999999999999987654

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.54  E-value=0.0022  Score=47.89  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-111
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-86
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		7e-86
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-84
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-62
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-62
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-61
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-61
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-61
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		5e-61
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		5e-61
1mh1_A	186	Small G-Protein Length = 186		7e-61
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-61
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-61
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-60
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-60
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-60
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-60
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-60
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-60
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-60
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-60
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-60
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		9e-60
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-59
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-59
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-59
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-59
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		7e-59
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		7e-59
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		7e-59
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-58
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-57
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-54
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-53
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-53
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-53
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		4e-53
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		4e-53
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		4e-53
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-53
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-53
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		4e-53
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-53
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-52
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-52
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		4e-52
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		5e-52
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-51
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		4e-51
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		7e-51
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		8e-51
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-50
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-50
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-50
2kb0_A	178	Cdc42(T35a) Length = 178		3e-50
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-50
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		6e-49
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-48
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-48
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-48
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-48
1s1c_A	183	Crystal Structure Of The Complex Between The Human		7e-48
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		7e-48
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-48
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-47
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-47
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-47
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-47
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-47
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-47
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-47
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		6e-47
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		7e-47
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-46
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-46
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-46
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-43
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-41
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-39
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		7e-39
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-33
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-33
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		8e-33
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		7e-28
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-28
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-23
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-22
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-22
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-21
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-21
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-20
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-20
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-20
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-20
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-20
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		9e-20
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-19
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-19
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-19
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-19
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-19
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-19
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-19
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		5e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-18
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-18
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-18
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-18
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-18
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-18
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-18
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-18
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-18
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-18
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-18
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-18
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-18
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-18
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-18
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-18
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		7e-18
4q21_A	189	Molecular Switch For Signal Transduction: Structura		7e-18
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		8e-18
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		8e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-18
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-17
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-17
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-17
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-17
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-17
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-17
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-17
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-17
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-17
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-17
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		6e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		6e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		6e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		9e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-16
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-16
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-16
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-16
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-16
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-16
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-16
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-16
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-16
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-16
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-16
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-16
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-16
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-16
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-16
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		7e-16
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		7e-16
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		8e-16
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-15
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-15
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-15
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-15
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-15
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-15
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-15
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-15
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-15
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-15
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-15
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-15
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		8e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-14
1byu_A	216	Canine Gdp-Ran Length = 216		2e-14
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-14
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-14
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-14
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-14
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-14
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		7e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-14
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		9e-14
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-13
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-13
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-13
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-13
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-13
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-13
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-13
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-13
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		4e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		5e-13
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		7e-13
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		8e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		8e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-12
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-12
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-12
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-12
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-12
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-12
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-12
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-11
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-09
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-06
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-04
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		6e-04
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-04
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		7e-04

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/211 (91%), Positives = 200/211 (94%), Gaps = 3/211 (1%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MS SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+GYLADH  +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 124 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGCAA 211
           PRRKE+  R+K HRRS CSIA SIVCGGC A
Sbjct: 182 PRRKEVPRRRKNHRRSGCSIA-SIVCGGCTA 211

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  314 bits (804), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/180 (81%), Positives = 162/180 (90%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+ +  DH G+  ITT QGEEL+K IG+  YIECSSKTQQNVKAVFD AIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  312 bits (800), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 162/180 (90%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MS ++FIKCVTVGDGAVGKTCMLI YT N FPTDY+PTVFDNFSANV VDGS VNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYEN+ KKW+PEL+ +AP +PIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+ +L DH G+  ITTAQGEELRK IGA  Y+ECSSKTQQNVKAVFDTAI+V L+P
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 162/180 (90%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G+ VNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPIVLVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+ +  DH G+  ITT QGEEL+K IGA AYIECSSK+Q+NVK VFD AI+VVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 138/191 (72%), Gaps = 8/191 (4%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP   
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
                KKR R+
Sbjct: 181 ---PVKKRKRK 188

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  233 bits (594), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/181 (61%), Positives = 135/181 (74%), Gaps = 2/181 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP  K
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 185 E 185
           +
Sbjct: 184 K 184

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 8/191 (4%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP   
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
                KKR R+
Sbjct: 181 ---PVKKRKRK 188

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 8/191 (4%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP   
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
                KKR R+
Sbjct: 181 ---PVKKRKRK 188

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 8/191 (4%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+ ++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP   
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP--- 180
Query: 185 EMMARKKRHRR 195
                KKR R+
Sbjct: 181 ---PVKKRKRK 188

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  230 bits (586), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+ ++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP  K
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 187
Query: 185 E 185
           +
Sbjct: 188 K 188

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  230 bits (586), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+ ++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP  K
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 185 E 185
           +
Sbjct: 184 K 184

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  229 bits (585), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+ ++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL PP  K
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 185
Query: 185 E 185
           +
Sbjct: 186 K 186

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  229 bits (584), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 134/182 (73%), Gaps = 2/182 (1%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AG EDY RLRPLSY   D+F++ FSL+S AS+ +V  KW PE+R   PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           LR+D+  +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL 
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
Query: 180 PP 181
           PP
Sbjct: 331 PP 332

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  229 bits (584), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 134/182 (73%), Gaps = 2/182 (1%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AG EDY RLRPLSY   D+F++ FSL+S AS+ +V  KW PE+R   PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           LR+D+  +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL 
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
Query: 180 PP 181
           PP
Sbjct: 331 PP 332

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 132/175 (75%), Gaps = 2/175 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 134/182 (73%), Gaps = 2/182 (1%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AG EDY RLRPLSY   D+F++ FSL+S AS+ +V  KW PE+R   PN PI+LVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           LR+D+  +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL 
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
Query: 180 PP 181
           PP
Sbjct: 331 PP 332

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  227 bits (578), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 138/196 (70%), Gaps = 10/196 (5%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VD   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S ASYENV  KW PE+R   P+ PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +       +  IT  QG  L K+I +  Y+ECS+ TQ+ +K VFD AI+ VL P    
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP---- 179
Query: 185 EMMARKKRHRRSSCSI 200
               +  R ++ +CS+
Sbjct: 180 ----QPTRQQKRACSL 191

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  227 bits (578), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDT
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLD
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D+  +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  226 bits (577), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/173 (62%), Positives = 130/173 (75%), Gaps = 2/173 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  226 bits (575), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N  P +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  225 bits (574), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N F  +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 136/196 (69%), Gaps = 21/196 (10%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YSRLRPLSY--------------RG-----ADIFVLAFSLISRASYENVLKKWMPELRRF 107
           Y RLRPLSY              RG     AD+F++ FSL+S AS+ENV  KW PE+R  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APNVPIVLVGTKLDLREDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQN 165
            PN PI+LVGTKLDLR+D+  +       +  IT  QG  + K+IGA  Y+ECS+ TQ+ 
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 166 VKAVFDTAIKVVLQPP 181
           +K VFD AI+ VL PP
Sbjct: 186 LKTVFDEAIRAVLCPP 201

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   P+ PI+LVGTKLDLR+D+
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + ++IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   P+ PI+LVGTKLDLR+D+
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + ++IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   P+ PI+LVGTKLDLR+D+
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  + ++IG+  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 131/180 (72%), Gaps = 2/180 (1%)
Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
            S+ IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV VD   VNLGLWDTA
Sbjct: 6   GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
           GQEDY RLRPLSY   D+F++ FSL+S ASYENV  KW PE+R   P+ PI+LVGTKLDL
Sbjct: 66  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
Query: 123 REDRGYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           R+D+  +       +  IT  QG  L K+I +  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV VD   VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S ASYENV  KW PE+R   P+ PI+LVGTKLDLR+D+
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 127 GYLADHVGSNV--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +       +  IT  QG  L K+I +  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  206 bits (525), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           +SA + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+D
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           DLR+D   + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   
Sbjct: 125 DLRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 178 LQPPRRKE 185
           L+PP  K+
Sbjct: 184 LEPPEPKK 191

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 132/177 (74%), Gaps = 2/177 (1%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V V G    LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           DY RLRPLSY   D+F++ FS+++ AS++NV ++W+PEL+ +APNVP +L+GT++DLR+D
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 126 RGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
              LA  + +    I   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  +L P
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D   + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 179 QPPRRKE 185
           +PP  K+
Sbjct: 181 EPPEPKK 187

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DT
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D   + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 121 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 179 QPPRRKE 185
           +PP  K+
Sbjct: 180 EPPEPKK 186

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D   + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 179 QPPRRKE 185
           +PP  K+
Sbjct: 181 EPPEPKK 187

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 125 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 183
Query: 184 KE 185
           K+
Sbjct: 184 KK 185

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
           K+
Sbjct: 183 KK 184

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
           K+
Sbjct: 183 KK 184

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
           K+
Sbjct: 183 KK 184

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
           K+
Sbjct: 183 KK 184

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 128/181 (70%), Gaps = 4/181 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 134 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 192
Query: 184 K 184
           K
Sbjct: 193 K 193

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 130/187 (69%), Gaps = 4/187 (2%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DT
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LREDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D   + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 126 LRDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 179 QPPRRKE 185
           +PP  K+
Sbjct: 185 EPPEPKK 191

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
           K+
Sbjct: 183 KK 184

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 184 KE 185
           K+
Sbjct: 183 KK 184

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  200 bits (509), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  
Sbjct: 128 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 186
Query: 184 KE 185
           K+
Sbjct: 187 KK 188

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 126/177 (71%), Gaps = 4/177 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+P
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 4/180 (2%)
Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
            S+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTA
Sbjct: 4   GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
           GQEDY RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DL
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 123 REDRGYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R+D   + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 RDDPSTI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 126 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 124/175 (70%), Gaps = 4/175 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+P VFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  194 bits (492), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NK P++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 GYLADHVGSN---VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             + + +  N    IT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STI-EKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 124/175 (70%), Gaps = 2/175 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V+VDG  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           + +LRPL Y   DIF+L FS++S +S++NV +KW+PE+R   P  PI+LVGT+ DLRED 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 GYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             L   D      +     + L ++I AA+YIECS+ TQ+N+K VFD AI   +Q
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ  R K
Sbjct: 129 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 187
Query: 185 E 185
           +
Sbjct: 188 K 188

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ  R K
Sbjct: 129 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 187
Query: 185 E 185
           +
Sbjct: 188 K 188

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ  R K
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 185
Query: 185 E 185
           +
Sbjct: 186 K 186

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ  R K
Sbjct: 130 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 188
Query: 185 E 185
           +
Sbjct: 189 K 189

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  186 bits (473), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 129 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  186 bits (473), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 128 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 122/181 (67%), Gaps = 4/181 (2%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           SA+   K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDT
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K D
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LRED---RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR D   R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 125 LRNDEHTRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183
Query: 179 Q 179
           Q
Sbjct: 184 Q 184

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 4/181 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ  R K
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 185
Query: 185 E 185
           +
Sbjct: 186 K 186

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR+D  
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    + + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 147 TRRELA-KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 4/181 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ  R K
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGK 185
Query: 185 E 185
           +
Sbjct: 186 K 186

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 126/196 (64%), Gaps = 13/196 (6%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR+D  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R  LA  +    + + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +  LQ     
Sbjct: 127 TRRELA-KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ----- 180
Query: 185 EMMARKKRHRRSSCSI 200
                +K  RR  C I
Sbjct: 181 ----VRKNKRRRGCPI 192

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR+D  
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    + + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 147 TRRELA-KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 125 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD A GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 128 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  183 bits (464), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW+PE++ F PNVPI+LV  K DLR D  
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    + T  G  +  +I A  Y+ECS+KT++ V+ VF+TA +  LQ
Sbjct: 147 VRTELA-RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 125 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD A GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
            R RPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 67  DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
              +   +    +  A+G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED-- 125
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D  
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 126 -RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R  LA  +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 130 TRRELA-KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 112/173 (64%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  +  +FP  Y+PTVF+N+ A+V VDG  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
            RLRPLSY  +++ ++ FS+    S ENV +KW+ E+  F   VPI+LVG K+DLR D  
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
            +      G   +T+ +G+ +  QIGA  Y ECS+KT   V+ VF+ A +  L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ+D
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPL Y  A + +L F + S  S++N+  +W PE+  F   VPI++VG K DLR+D+
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 127 GYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +      G   +T  +G+E+ + +GA AY+ECS++   NV AVF  A +V L
Sbjct: 155 SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +  K +K V VGDGAVGKTC+L+ ++  + PT Y+PTVF+NFS  +        L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQE+Y RLRPLSY  +D+ +L F++ +R S++N+  KW PE++ +      VLVG K+D
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D        GS+ +T  +G++L +++G  AYIE SS  +  +  VF+ ++  + 
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +  K +K V VGDGAVGKTC+L+ ++  + PT Y+PTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQE+Y RLRPLSY  +D+ +L F++ +R S++N+  KW PE++ +      VLVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           LR+D        GS+ +T  +G++L +++G  AYIE SS  +  +  VF+ ++  + 
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 1   MSASKFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L L
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGT 118
           WDT+G   Y  +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSS-KTQQNVKAVFDTA 173
           K DLR D   L +  +     ++  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 1   MSASKFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGT 118
           WDT+G   Y  +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSS-KTQQNVKAVFDTA 173
           K DLR D   L +  +     ++  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 3   ASKFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           +++ +KC  V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L LWD
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           T+G   Y  +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG K 
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSS-KTQQNVKAVFDTA 173
           DLR D   L +  +     ++  QG  + KQIGAA YIECS+ +++ +V+ +F  A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
             +RPL Y  +D  +L F +    + ++ LKKW  E+  + P+  ++L+G K DLR D  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQPP 181
            L +  H     I+  QG  + KQ+GA  Y+E S+ T ++++ ++F TA  + L  P
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
             +RPL Y  +D  +L F +    + ++ LKKW  E+  + P+  ++L+G K DLR D  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQPP 181
            L +  H     I+  QG  + KQ+GA  Y+E S+ T ++++ ++F TA  + L  P
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
             +RPL Y  +D  +L F +    + ++ LKKW  E+  + P+  ++L+G K DLR D  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 YLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQPP 181
            L +  H     I+  QG  + KQ+GA  Y+E S+ T ++++ ++F TA  + L  P
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +NKF +    T+   F + ++ VDG  V L +WDTA
Sbjct: 5   SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
           GQE +  LR   YRGAD  +L FS+  R S+EN L  W  E   +A      + P V++G
Sbjct: 65  GQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K+D +EDR           +TT + +    + G   Y+E S+K   NV   F+ A++ V
Sbjct: 124 NKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
Query: 178 LQPPRRKE 185
           L    + E
Sbjct: 173 LAVEEQLE 180

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +NKF T    T+   F + ++ VDG  V + +WDTA
Sbjct: 7   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
           GQE +  LR   YRG+D  +L FS+    S++N L  W  E   +A      + P V++G
Sbjct: 67  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K+D+ E +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 126 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 178 L 178
           L
Sbjct: 175 L 175

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +NKF T    T+   F + ++ VDG  V + +WDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
           GQE +  LR   YRG+D  +L FS+    S++N L  W  E   +A      + P V++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K+D+ E +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 178 L 178
           L
Sbjct: 173 L 173

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +NKF +    T+   F + ++ VDG  V + +WDTA
Sbjct: 9   SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
           GQE +  LR   YRG+D  +L FS+    S++N L  W  E   +A      + P V++G
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K D++E +           ++T + +   K  G   Y E S+K   NV A F+ A++ +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 178 L 178
           L
Sbjct: 177 L 177

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    ++++   V L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  R S++NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDL- 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
                    V   V+T+ +G EL    G   +IE S+K   NV+  F T
Sbjct: 127 ---------VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHT 165

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDT 61
            S  +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L LWDT
Sbjct: 4   GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKL 120
           AGQE +  +    YRGA   +L + +    ++ N+ K+W   +   A +   ++LVG K 
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           D+            + V+T  QGE L K++G   +IE S+K   NV  +F T  K++
Sbjct: 123 DME-----------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWD 60
           S    +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L LWD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTK 119
           TAGQE +  +    YRGA   +L + +    ++ N+ K+W   +   A +   ++LVG K
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            D+            + V+T  QGE L K++G   +IE S+K   NV  +F T  K++ +
Sbjct: 135 SDME-----------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 182
Query: 180 P 180
Sbjct: 183 K 183

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 15/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
            +  +    YRGA   +L + +    ++ N+ K+W   +   A +   ++LVG K D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
                     + V+T  QGE L K++G   +IE S+K   NV  +F T  K++
Sbjct: 122 ----------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRED 125
           +  +    YRGA   +L + +    ++ N+ K+W   +   A +   ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
                    + V+T  QGE L K++G   +IE S+K   NV  +F T  K++
Sbjct: 122 ---------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                    +  + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                    +  + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRED 125
           +  +    YRGA   +L + +    ++ N+ K+W   +   A +   ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
                    + V+T  QGE L K++G   +IE S+K   NV  +F T  K++
Sbjct: 122 ---------TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 19/185 (10%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    +I TV  +F   V  VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
           E +  +    YR A   +L + + ++AS++N+ + W+ E+  +A  +V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
            +R          V+    GE+L K+ G   ++E S+KT  NV    D A   + +  +R
Sbjct: 130 HER----------VVKREDGEKLAKEYG-LPFMETSAKTGLNV----DLAFTAIAKELKR 174
Query: 184 KEMMA 188
           + M A
Sbjct: 175 RSMKA 179

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                    +  + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                       + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 121 --------AGRTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  NKF   +I T+  +F +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
            +  L P+ YR ++  +L + +    S++ V K W+ ELR+   N + + +VG K+DL +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +R     HV     +  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 126 ER-----HV-----SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  NKF   +I T+  +F +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
            +  L P+ YR ++  +L + +    S++ V K W+ ELR+   N + + +VG K+DL +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +R     HV     +  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 126 ER-----HV-----SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  NKF   +I T+  +F +  + + G  VNL +WDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
            +  L P+ YR ++  +L + +    S++ V K W+ ELR+   N + + +VG K+DL +
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +R     HV     +  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 140 ER-----HV-----SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++   +  +++R   + +VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL--- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
                    S  + T Q ++L +  G   +IE S+KT+Q V   F T ++ +
Sbjct: 122 --------PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++   +  +++R   + +VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL--- 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
                    S  + T Q ++L +  G   +IE S+KT+Q V   F T ++ +
Sbjct: 122 --------PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + SY NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 128 TKK----------VVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMT 165

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + SY NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 128 TKK----------VVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMT 165

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
            IK + +GD  VGKT  L  YT NKF   +I TV  +F     V      +GS      V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
           +L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + WM +L+   +  N  
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           IVL+G K DL + R           +   Q  EL  + G   Y E S+ T QNV+   +T
Sbjct: 144 IVLIGNKADLPDQR----------EVNERQARELADKYG-IPYFETSAATGQNVEKAVET 192
Query: 173 AIKVVLQ 179
            + ++++
Sbjct: 193 LLDLIMK 199

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             R           + T +     ++ G  ++IE S+    NV+A F T +
Sbjct: 139 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 178

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 14/186 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y R+    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             R    D   +     A+   L       ++IE S+    NV+  F   +  + +   +
Sbjct: 124 HLRAVPTDEARA----FAEKNNL-------SFIETSALDSTNVEEAFKNILTEIYRIVSQ 172
Query: 184 KEMMAR 189
           K++  R
Sbjct: 173 KQIADR 178

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             R           + T +     ++ G  ++IE S+    NV+A F T +
Sbjct: 148 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 187

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 152 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXT 189

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 120 K----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 155

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           K V +GD   GK+ +++ +  ++F       I   F  FS  +AV+ + V   +WDTAGQ
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQ 71
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLR 123
           E Y  L P+ YRGA   ++ F + ++AS+E   KKW+ EL+ +  PN+ + L G K DL 
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL 130
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           + R             TA+  +   Q     ++E S+KT  NVK +F
Sbjct: 131 DARK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
            IK + +GD  VGKT  L  YT NKF   +I TV  +F     V      DG+      V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + WM +L+   +  N  
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           IVL+G K DL + R           +   Q  EL ++ G   Y E S+ T QNV+   +T
Sbjct: 130 IVLIGNKADLPDQR----------EVNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVVLQ 179
            + ++++
Sbjct: 179 LLDLIMK 185

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
            IK + +GD  VGKT  L  YT NKF   +I TV  +F     V      DG+      V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + WM +L+   +  N  
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           IVL+G K DL + R           +   Q  EL ++ G   Y E S+ T QNV+   +T
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVVLQ 179
            + ++++
Sbjct: 179 LLDLIMK 185

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 135 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 172

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 125 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 162

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 125 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 162

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 144 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 181

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T  KF  D   T+   F   +  V G  + L +WDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
           GQE +  +    YRGA   ++ + +  R++Y N L  W+ + R    PN  I+L+G K D
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           L   R           +T  + ++  ++ G   ++E S+KT +NV+  F  A K + Q
Sbjct: 132 LEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 135 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 172

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
             +          V+     +E    +G   ++E S+K   NV+  F T
Sbjct: 127 TKK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 164

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 1   MSASK--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGS-IVNL 56
           MS+ K   +K + +GD  VGKT ++  Y ++K+   Y  T+  +F +  V VDG  +  +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 57  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNV 111
            +WDTAGQE +  L    YRGAD  VL + + + +S+EN+ K W  E    A        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119
Query: 112 PIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
           P V++G K+D  E +          +++    +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESK---------KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170
Query: 172 TAIKVVLQPPR 182
              +  LQ  +
Sbjct: 171 EIARSALQQNQ 181

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68  SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
           + +R   +R  + F+  FS+    S+       E +L+    E      NVP +LVG K 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 129
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           DL ED+  ++     N          R +     Y+E S+KT+ NV  VF
Sbjct: 130 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68  SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
           + +R   +R  + F+  FS+    S+       E +L+    E      NVP +LVG K 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 133
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           DL ED+  ++     N          R +     Y+E S+KT+ NV  VF
Sbjct: 134 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68  SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
           + +R   +R  + F+  FS+    S+       E +L+    E      NVP +LVG K 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           DL ED+  ++     N          R +     Y+E S+KT+ NV  VF
Sbjct: 122 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R L  +    F L +S+ +++++ N L+    ++ R     +VP++LVG K DL ++
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R          V+   QG+ L +Q    A++E S+K++ NV  +F
Sbjct: 124 R----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           + +R   +R  + F+L FS+    S+      ++ +  ++     +P+++VG K DL E 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R    +   S      + EE   Q     Y+E S+KT+ NV  VF
Sbjct: 129 RQVPVEEARS------KAEEWGVQ-----YVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           + +R   +R  + F+L FS+    S+      ++ +  ++     +P+++VG K DL E 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R    +   S      + EE   Q     Y+E S+KT+ NV  VF
Sbjct: 125 RQVPVEEARS------KAEEWGVQ-----YVETSAKTRANVDKVF 158

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             R           + T +     ++ G  ++IE S+    NV+A F T +
Sbjct: 127 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 12/160 (7%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I +  + F TDY PT+ D+++    +D     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79  DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
           + F+L FS+  R S+E + K     LR +     P++L+G K DL        DH     
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL--------DH--QRQ 127
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           +T  +G++L +Q+    Y+E S+K + NV   F   ++V+
Sbjct: 128 VTQEEGQQLARQL-KVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             R           + T +     ++ G  ++IE S+    NV+A F T +
Sbjct: 148 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 187

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q   RK
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q   RK
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F  +Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R L  +    F L +S+ +++++ N L+    ++ R     +VP++LVG K DL ++
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R          V+   QG+ L +Q    A++E S+K++ NV  +F
Sbjct: 124 R----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68  SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
           + +R   +R  + F+  FS+    S+       E +L+    E      NVP +LVG K 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 119
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           DL ED+  ++     N          R       Y+E S+KT+ NV  VF
Sbjct: 120 DL-EDKRQVSVEEAKN----------RADQWNVNYVETSAKTRANVDKVF 158

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I LVG K DLR
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             R           + T +     ++ G  ++IE S+    NV+A F T +
Sbjct: 124 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q   RK
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I LVG K DLR
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
             R           + T +     ++ G  ++IE S+    NV+A F T +
Sbjct: 130 HLRA----------VPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTIL 169

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG I  L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
            IK + +GD  VGKT  L  YT NKF   +I TV  +F     V      DG+      V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   +  N  
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           IVL+G K DL + R           +   Q  EL ++ G   Y E S+ T QNV+   +T
Sbjct: 130 IVLIGNKADLPDQR----------EVNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVV 177
            + ++
Sbjct: 179 LLDLI 183

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+ +L+ +  N F   YI T+  +F    V ++G  V L +WDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
           E +  +    YRG    ++ + + S  S+ NV K+W+ E+ +   +V  +LVG K D  E
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPE 127
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            +          V+ T    +   Q+G   + E S+K   NV+ +F+   ++VL+   +K
Sbjct: 128 RK----------VVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFNCITELVLRA--KK 174
Query: 185 EMMARKK 191
           + +A+++
Sbjct: 175 DNLAKQQ 181

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 25/185 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
            IK + +GD  VGKT  L  YT NKF   +I TV  +F     V      DG+      V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   +  N  
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           IVL+G K DL + R           +   Q  EL ++ G   Y E S+ T QNV+   +T
Sbjct: 130 IVLIGNKADLPDQR----------EVNERQARELAEKYG-IPYFETSAATGQNVEKSVET 178
Query: 173 AIKVV 177
            + ++
Sbjct: 179 LLDLI 183

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R L  +    F L +S+ +++++ N L+    ++ R     +VP++LVG K DL ++
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R          V+   QG+ L +Q    A++E S+K++ NV  +F
Sbjct: 124 R----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T  KF  D   T+   F   +  V G  + L +WDTA
Sbjct: 28  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
           GQ  +  +    YRGA   ++ + +  R++Y N L  W+ + R    PN  I+L+G K D
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           L   R           +T  + ++  ++ G   ++E S+KT +NV+  F  A K + Q
Sbjct: 147 LEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +T  +F   +  T+   F A  + +DG  + L +WDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + +  R ++ N L  W+ + R+ +  N+ I+L+G K DL 
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
             R           +   +GE   ++ G   ++E S+KT  NV+  F    K + +
Sbjct: 129 SRR----------EVKKEEGEAFAREHG-LIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V +DG  V L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 123
           E +  +    YRG+   ++ + +  + S+ N +K W+ E+ R+A +  + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 EDR 126
           + R
Sbjct: 127 DKR 129

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDT 61
            S   K + +GD  VGK+C+L+ +T  +F   +  T+   F A  V +DG  + L +WDT
Sbjct: 18  GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF-APNVPIVLVGTKL 120
           AGQE +  +    YRGA   +L + +  R ++ N L  W+ + R+  + N+ I+L+G K 
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKS 136
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           DL   R           +   +GE   ++ G   ++E S+KT  NV+  F    K +
Sbjct: 137 DLESRRD----------VKREEGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEI 182

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V +DG  V L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 123
           E +  +    YRG+   ++ + +  + S+ N +K W+ E+ R+A +  + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 EDR 126
           + R
Sbjct: 127 DKR 129

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +  +   + L +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  +    YRGA  F+L + + +  S+ N ++ W  +++ ++  N  ++LVG K D+ +
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           +R          V+++ +G +L   +G   + E S+K   NVK  F+  + V+
Sbjct: 125 ER----------VVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVI 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 83  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 130
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 131 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 172

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 24/170 (14%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68  SRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNVPIVLVGTKL 120
           + +R   +R  + F+  FS+    S+       E +L+    E      NVP +LVG K 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           DL ED+  ++     N          R +     Y+E S+KT+ NV  VF
Sbjct: 122 DL-EDKRQVSVEEAKN----------RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           ++  +    YRGA   VL FS   R S+E  +  W  ++     ++P  LV  K+DL +D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFE-AISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
                     + I   + E L K++    Y   S K   NV  VF
Sbjct: 125 ----------SCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + + +F  +Y PT+   +     +D  +V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGT 118
           TAGQED  + R    R  + FVL + +  R S+E V  LK  + E+++   NV ++LVG 
Sbjct: 83  TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVF 170
           K DL        DH  S  ++T +GE+L  ++ A A+ ECS+ T + N+  +F
Sbjct: 141 KADL--------DH--SRQVSTEEGEKLATEL-ACAFYECSACTGEGNITEIF 182

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 128
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 129 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 128
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 129 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G   VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R L  +    F L +S+ +++++ N L+    ++ R     +VP++LVG K DL ++
Sbjct: 67  TAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R          V+   QG+ L +Q    A++E S+K++ NV  +F
Sbjct: 126 R----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V +DG  V L +WDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 123
           E +  +    YRG+   ++ + +  + S+ N +K W+ E+ R+A +  + +LVG K DL+
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 EDR 126
           + R
Sbjct: 140 DKR 142

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K  + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  +    YRGA  F+L + + +  S+ N ++ W  +++ ++  N  ++LVG K D+ E
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           +R          V+ T +G+ L +Q+G   + E S+K   +V+  F+  +  +
Sbjct: 143 ER----------VVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQ 64
             K V +G+  VGKTC++  +T   FP     T+  D     V ++G  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLR 123
           E +  +    YR A+  +L + +    S+   L +W+ E+ ++A N V  VLVG K+DL 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVV 177
           E R           ++  + EE   +     Y+E S+K   NV+ +F D A +++
Sbjct: 145 ERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG + DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQEDYSRL 70
           +GD  VGK+C+L+ +  + +   YI T+  +F    + +DG  + L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71  RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122
               YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 82  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 129
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 130 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 171

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++   Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREFRQ 165

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DT GQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ +++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DT GQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  ++ PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG+E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTA QE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTA QE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V ++   V   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
            ++ L P  YR A   ++ + +    S+    + W+ EL   A  ++ I LVG K+D  +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +        G   +   +GE+L ++ G   + E S+KT +NV  VF
Sbjct: 123 EG-------GERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVF 160

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++   +  +++R   + +VP+VLVG K DL            S 
Sbjct: 77  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL-----------PSR 124
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            + T Q ++L +  G   +IE S+KT+Q V   F T ++ +
Sbjct: 125 TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++   +  +++R   + +VP+VLVG K DL            S 
Sbjct: 77  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL-----------PSR 124
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            + T Q ++L +  G   +IE S+KT+Q V   F T ++ +
Sbjct: 125 TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T + F  +   T+  +F    ++VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLR 123
            +  L P  YRGA   +L + +  R ++   L  W+ EL  +     IV  LVG K+D +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           E+R      V  N     +G +  ++  +  +IE S+KT   V+  F+  ++ ++Q P
Sbjct: 134 ENR-----EVDRN-----EGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQTP 180

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 14/183 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N+F  D   T+   F+   + ++G  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A  NV + L+G K DL 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLA 131
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             R    +       T AQ  +L        + E S+   +NV   F+  I  + Q   +
Sbjct: 132 HLRAVPTEESK----TFAQENQL-------LFTETSALNSENVDKAFEELINTIYQKVSK 180
Query: 184 KEM 186
            +M
Sbjct: 181 HQM 183

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 14/183 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
             K + +G    GK+C+L  +  NKF  D   T+   F + V  V G  V L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + + SR +Y N L  W+ + R  A PN+ ++L G K DL 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
            +R    +         AQ  EL        ++E S+ T +NV+  F    + +L     
Sbjct: 144 PER----EVTFLEASRFAQENEL-------MFLETSALTGENVEEAFLKCARTILNKIDS 192
Query: 184 KEM 186
            E+
Sbjct: 193 GEL 195

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V VD  +V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
           E +  L    YRGAD  VL F + +  +++  L  W  E       R   N P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           +DL E+R           + T + +          Y E S+K   NV+  F T  +  L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
                E+
Sbjct: 176 QETEVEL 182

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  +    YRGA  F+L + + +  S+ N ++ W  +++ ++  N  ++LVG K D  +
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           +R          V+++ +G +L   +G   + E S+K   NVK  F+  + V+
Sbjct: 128 ER----------VVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVI 169

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ ++  N  ++LVG K DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           +R          V+    G  L   +G   + E S+K   NVK VF+  + V+
Sbjct: 142 ER----------VVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVI 183

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V VD  +V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
           E +  L    YRGAD  VL F + +  +++  L  W  E       R   N P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           +DL E+R           + T + +          Y E S+K   NV+  F T  +  L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
                E+
Sbjct: 176 QETEVEL 182

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 128
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 129 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 127 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+ S +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGKTC+L  ++ + F + +I T+  +F    + +DG  + L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + + +  S++N+ + W+  +   A  +V  +++G K D+ 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           + R           ++  +GE+L    G   ++E S+K   NV+  F T
Sbjct: 125 DKRQ----------VSKERGEKLALDYG-IKFMETSAKANINVENAFFT 162

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+ ++   +  +++R   + +VP+VLVG K DL            + 
Sbjct: 94  EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL-----------PTR 141
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            + T Q  EL K  G   +IE S+KT+Q V+  F T ++ + Q   +K
Sbjct: 142 TVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   V +DG    L + DTAG E+YS +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++   +  +++R   + +VP+VLVG K DL            S 
Sbjct: 94  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL-----------PSR 141
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            + T Q ++L +  G   +IE S+KT+Q V   F T ++ +
Sbjct: 142 TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   V L LWDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R + + V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           IT  +GE+  K++ +  +IE S+KT  NVK +F
Sbjct: 122 KRQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLF 156

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K + +GD  VGKTC+L  ++ + F + +I T+  +F    + +DG  + L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + + +  S++N+ + W+  +   A  +V  +++G K D+ 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           + R           ++  +GE+L    G   ++E S+K   NV+  F T
Sbjct: 127 DKRQ----------VSKERGEKLALDYG-IKFMETSAKANINVENAFFT 164

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T + F      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            ++ +    YR A   +L + +  + ++++ L KWM  + ++A  +  ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           DR           IT  QGE+  +QI    + E S+K   NV  +F   +  +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I    N F  +  PT+ D++   V +DG    L + DTAGQE+YS +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSN 136
           + F+  F++ +  S+E++  ++  +++R   + +VP+VLVG K DL            + 
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-----------AAR 123
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  ++    K W+ EL+R A PN+ I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 125 KRA-----------VEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV------DGSI-----V 54
            IK + +GD  VGKT +L  YT  KF + +I TV  +F     V      DG++     +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVP 112
           +L LWDTAG E +  L    +R A  F+L F L +  S+ NV + W+ +L+   ++ N  
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           IVL G K DL + R           +   +  EL ++ G   Y E S+    N+    + 
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYG-IPYFETSAANGTNISHAIEM 178
Query: 173 AIKVVLQPPRR 183
            + ++++   R
Sbjct: 179 LLDLIMKRMER 189

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V VD  +V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
           E +  L    YRGAD  VL F + +  +++  L  W  E       R   N P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           +D  E+R           + T + +          Y E S+K   NV+  F T  +  L+
Sbjct: 127 IDF-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
                E+
Sbjct: 176 QETEVEL 182

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  ++    K W+ EL+R A PN+ I L G K DL  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 123 KRA-----------VEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +   KF  D   T+   F + +  V G  V L +WDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + + SR +Y N L  W+ + R  A  N+ I+L G K DL 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
            DR           +T  +     ++     ++E S+ T +NV+  F    + +L     
Sbjct: 129 ADR----------EVTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILNKIES 177
Query: 184 KEM 186
            E+
Sbjct: 178 GEL 180

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V VGD +VGKTC++  + +  F      T+  +F+   + + G  V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E +  +    YR A+  +LA+ +  R+S+ +V   W+ ++R++A  N+  +L+G K DL 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           E R           ++ A+ + L +       IE S+K   NV+  F
Sbjct: 148 ELR----------EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV--DGSIVNLGLWDTAG 63
             K V +GD  VGK+ +L  +T ++F  +   T+   F+       +  I+   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122
           QE Y  +    YRGA   +L + +  + S+EN+ +KW+ ELR  A  N+ I+LVG K DL
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 REDRGYLADHVGSNVITT-AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           +  R      +  N  T  A+ E+L       A+IE S+    NV+  F   +  +    
Sbjct: 126 KHLRV-----INDNDATQYAKKEKL-------AFIETSALEATNVELAFHQLLNEIYNVR 173
Query: 182 RRKE 185
           ++K+
Sbjct: 174 QKKQ 177

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 126 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P  YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  + E S+KT  NV  +F
Sbjct: 127 KRA-----------VDFQEAQSYADDNSLLFXETSAKTSXNVNEIF 161

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2   SASKF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGL 58
           SASK    K V +G+ AVGK+ +++ +   +F      T+   F + +V +D + V   +
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVG 117
           WDTAGQE Y  L P+ YRGA   ++ + + ++ ++    K W+ EL+R A P++ I L G
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAG 120
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            K DL   R           +   +  +      +  ++E S+KT  NV  +F
Sbjct: 121 NKADLANKR-----------MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V VD  +V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----RFAPNVPIVLVGTK 119
           E +  L    YRGAD  VL F + +  +++  L  W  E       R   N P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           +DL E+R           + T + +          Y E S+K   NV+  F T  +  L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
Query: 180 PPRRKEM 186
                E+
Sbjct: 176 QETEVEL 182

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 125 KRA-----------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +   KF  D   T+   F + +  V G  V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + + SR +Y N L  W+ + R  A  N+ I+L G K DL 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 EDR 126
            DR
Sbjct: 130 ADR 132

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +   +F      T+   F +  V +D + V   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ + + +  ++    K W+ EL+R A PN+ I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R               Q  +      +  ++E S+KT  NV  +F
Sbjct: 125 KRA-----------VEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   V L LWDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R + + V+ + + +  S+     KW+ ++R     +V I+LVG K DL +
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           ++T +GE   K++    +IE S+K   NVK +F
Sbjct: 134 KRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 13  GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP 72
           G G VGK+ +++ +    F   YIPTV D +   ++ D SI  L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73  LSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA 130
           LS      F+L +S+ SR S E +  + + + E++    ++PI+LVG K           
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK----------C 119
Query: 131 DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV 176
           D   S  + +++ E L +     A++E S+K   NVK +F   + +
Sbjct: 120 DESPSREVQSSEAEALAR-TWKCAFMETSAKLNHNVKELFQELLNL 164

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWD 60
           SA + +K   +GD  VGK+ ++  +  + F  +  PT+  +F +  V     +    +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTK 119
           TAGQE +  L P+ YRG+   V+ + +  + S+   LKKW+ EL+   P N+ + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            DL + R           +     +E  + IGA   +E S+K   N++ +F
Sbjct: 138 CDLSDIRE----------VPLKDAKEYAESIGAIV-VETSAKNAINIEELF 177

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+PT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 R 126
           +
Sbjct: 130 K 130

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+PT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLW 59
            S+ K  K V  GD AVGK+  L+    N+F  +   T+  +F    + VDG    L LW
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 60  DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGT 118
           DTAGQE +  +    +R AD  +L + +    S+ N+ ++W+  +   A   VPI+LVG 
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141
Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKV 176
           K D+R+     A   G   +    GE+L    G A + E S+K   N V+AV   A +V
Sbjct: 142 KADIRD----TAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   V L LWDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R + + V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           ++  +GE   K++    +IE S+K   NVK +F
Sbjct: 121 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 155

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +   KF  D   T+   F + +  V G  V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 123
           E +  +    YRGA   +L + + SR +Y N L  W+ + R  A  N+ I+L G K DL 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 EDR 126
            DR
Sbjct: 127 ADR 129

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +G+ AVGKT ++  +  + F  +Y  T+  D  S  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPE-LRRFAPNVPIVLVGTKLDLRED 125
           +  L P   R +   ++ + + +R S+EN   KW+ + L     +V I LVG K DL + 
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           R           +T  +G + + Q     + E S+K   N+K +F
Sbjct: 122 RK----------VTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWD 60
           S S+  K + +GD  VGKTC+   + + +FP     T+  +F    V +DG  + + LWD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61  TAGQEDYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVPIVLVG 117
           TAGQE + + +    YR     V  + + + AS+ + L  W+ E ++   A ++P +LVG
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLR 123
            K DLR
Sbjct: 135 NKCDLR 140

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   YI T+  +    +   +   +   +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D++E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +      V +  IT  + + L+       Y + S+K+  N +  F
Sbjct: 125 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 156

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   YI T+  +    +   +   +   +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D++E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +      V +  IT  + + L+       Y + S+K+  N +  F
Sbjct: 124 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 155

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSI-VNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N+F  D   T+   FS    + G+  V   +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
            Y  +    YRGA   +L F L    +Y  V+++W+ EL   A   + ++LVG K DL +
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R           + T +     +  G   ++E S+    NV+  F+T +K +     ++
Sbjct: 130 ARE----------VPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSI-VNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N+F  D   T+   FS    + G+  V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRE 124
            Y  +    YRGA   +L F L    +Y  V+++W+ EL   A   + ++LVG K DL +
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
            R           + T +     +  G   ++E S+    NV+  F+T +K + 
Sbjct: 145 ARE----------VPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIF 187

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   YI T+  +    +   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D++E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +      V +  IT  + + L+       Y + S+K+  N +  F
Sbjct: 132 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 163

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            Y  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M  SK  K   +G  +VGK+ + I +   +F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYSRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLV 116
           TAGQ++YS + P +Y   DI  ++L +S+ S  S+E V+K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           G K DL  +R          VI+  +G+ L +    AA++E S+K  Q    VF
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 160

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M  SK  K   +G  +VGK+ + I +   +F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYSRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLV 116
           TAGQ++YS + P +Y   DI  ++L +S+ S  S+E V+K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           G K DL  +R          VI+  +G+ L +    AA++E S+K  Q    VF
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 160

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I +  + F +DY PT+ D+++   +VDG    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79  DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
             F+L F++  R S+  V K +   LR +   + P+VLVG K DL   R        +  
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-- 139
Query: 138 ITTAQGEELRKQIGAA---AYIECSSKTQQNVKAVFDTAIKVV 177
                        GA+   AY E S+K + NV   F+  ++ V
Sbjct: 140 ------------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 R 126
           +
Sbjct: 130 K 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 133

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTA 62
           S+  K + +GD  VGKTC+   + + +FP     T+  +F    V +DG  + + LWDTA
Sbjct: 27  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63  GQEDYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVPIVLVGTK 119
           GQE + + +    YR     V  +   + AS+ + L  W+ E ++   A ++P +LVG K
Sbjct: 87  GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRILVGNK 145
Query: 120 LDLR 123
            DLR
Sbjct: 146 CDLR 149

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 121

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   + L LWDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R +   V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           ++  +GE   K++    +IE S+K   NVK +F
Sbjct: 126 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   V L LWDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R + + V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           ++  +GE   K++    +IE S+K   NVK +F
Sbjct: 126 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++S +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
           D F++ +S+  +AS+E+V +     LR +   + P++LV  K+DL   R           
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
           +T  QG+E+  +     YIE S+K    NV   F   ++V+ Q
Sbjct: 141 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 18/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + I +   +F   Y PT+ + F+  + V+G   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68  SRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLVGTKLDLR 123
           S + P +Y   DI  ++L +S+ S  S+E V+K    +L      V  PI+LVG K DL 
Sbjct: 63  S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            +R          VI+  +G+ L +    AA++E S+K  Q    VF
Sbjct: 120 MER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 155

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++S +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79  DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
           D F++ +S+  +AS+E+V +     LR +   + P++LV  K+DL   R           
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 135
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
           +T  QG+E+  +     YIE S+K    NV   F   ++V+ Q
Sbjct: 136 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 177

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   V L LWDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R + + V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           ++  +GE   K++    +IE S+K   NVK +F
Sbjct: 136 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 170

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T+++F  +   T+   F+   + V+   +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
           E Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A  NV + L+G K DL 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             R    D         A+   +  Q+    + E S+    NV   F   I  + Q   +
Sbjct: 129 HLRAVPTDE--------AKNFAMENQM---LFTETSALNSDNVDKAFRELIVAIFQMVSK 177
Query: 184 KEM 186
            ++
Sbjct: 178 HQV 180

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M   ++ K V +G   VGKT +   +   +F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61  TAGQEDYSRLRPLSY-RGADIFVLAFSLISRASYENVLKKWMPELR--RFAPNVPIVLVG 117
           TAGQ++YS L P S+  G   +VL +S+ S  S++ V++    +L        VP+VLVG
Sbjct: 79  TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVG 136
Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K DL  +R           +   +G++L +  G A ++E S++  Q  + +F   I+ +
Sbjct: 137 NKADLSPERE----------VQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEI 185

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE++S +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
           D F++ +S+  +AS+E+V +     LR +   + P++LV  K+DL   R           
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
           +T  QG+E+  +     YIE S+K    NV   F   ++V+ Q
Sbjct: 141 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  L    Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 126 R 126
           +
Sbjct: 132 K 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 R 126
           +
Sbjct: 126 K 126

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE++S +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLREDRGYLADHVGSNV 137
           D F++ +S+  +AS+E+V +     LR +   + P++LV  K+DL   R           
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
           +T  QG+E+  +     YIE S+K    NV   F   ++V+ Q
Sbjct: 141 VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 128

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGSIVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + + +    Y+ T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 133

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   + L LWDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRE 124
            +  L P   R +   V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           ++  +GE   K++    +IE S+K   NVK +F
Sbjct: 133 KRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 167

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           SK  K   +G  +VGK+ + I +   +F     PT+ + F+  + V+G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAG 61
Query: 64  QEDYSRLRPLSYRGADI--FVLAFSLISRASYENVLKKWMPELRRFAPNV--PIVLVGTK 119
           Q++YS + P +Y   DI  ++L +S+ S  S+E V+K    +L      V  PI+LVG K
Sbjct: 62  QDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNK 118
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            DL  +R          VI+  +G+ L +    AA++E S+K  Q    VF
Sbjct: 119 KDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVF 158

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
           +K   +GD  VGK+ ++  +  + F  +  PT+  +F +  V     +    +WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  L P+ YRG+   ++ + +    ++ + LK W+ ELR+   P++ + + G K DL +
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            R           +     ++    I  A ++E S+K   N+  +F
Sbjct: 125 VRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 159

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWD 60
           SA + +K   +GD  VGK+ ++  +  + F  +  PT+  +F +  V     +    +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTK 119
           TAG E +  L P+ YRG+   ++ + +    ++ + LK W+ ELR+   P++ + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            DL + R           +     ++    I  A ++E S+K   N+  +F
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 160

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ + + + +  F   Y PT+ D +   + VD S   L + DTAG E ++ +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79  DIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDL 122
             F+L +SL+++ S++++  ++  +  ++R+   VP++LVG K+DL
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD--GSIVNLGLWDTAGQE 65
           K   +GDG VGKT  +      +F  +Y  TV         +D  G+++   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLRE 124
             + L+ + Y GA   +L F + SR + +N L +W+ E +    N  PIV+   K+D++ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIK- 130
Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +R  ++  +   V+     E          Y E S+KT  N    F
Sbjct: 131 NRQKISKKLVMEVLKGKNYE----------YFEISAKTAHNFGLPF 166

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 19  KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGA 78
           K+ +++ +    F   YIPT+ D +   ++ D S+  L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79  DIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSN 136
             F+L FS+ S+ S E +  + K + +++    ++P++LVG K D  +            
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE---------- 130
Query: 137 VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
            + T + + +  Q    A++E S+K   NVK +F
Sbjct: 131 -VDTREAQAV-AQEWKCAFMETSAKMNYNVKELF 162

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSI-VNLGLWDTAGQ 64
           +K V +GDGA GKT +  C+    F   Y  T+  D F   + + G++ V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV---PIV-LVGTKL 120
               ++      GA   +L + + +  S+EN L+ W   +++ +      P+V LVG K+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 121 DLREDR 126
           DL   R
Sbjct: 126 DLEHMR 131

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNLGLWD 60
           + + V +G+  VGK+ +   +       D    V   D +   + VDG   +I+ L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR------RFAPNVPIV 114
             G+ ++  L     +  D +++ +S+  RAS+E        ELR      R   ++PI+
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKA-----SELRIQLRRARQTEDIPII 118
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           LVG K DL          V    ++ ++G      +    +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDL----------VRXREVSVSEGR-AXAVVFDCKFIETSAAVQHNVKELFEGIV 167
Query: 175 KVVLQPPRRKEMMARK 190
           + V      KE   R+
Sbjct: 168 RQVRLRRDSKEKNERR 183

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNLGLWD 60
           + + V +G+  VGK+ +   +       D    V   D +   + VDG   +I+ L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR------RFAPNVPIV 114
             G+ ++  L     +  D +++ +S+  RAS+E        ELR      R   ++PI+
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-----SELRIQLRRARQTEDIPII 118
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           LVG K DL          V    ++ ++G      +    +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDL----------VRXREVSVSEGR-AXAVVFDXKFIETSAAVQHNVKELFEGIV 167
Query: 175 KVVLQPPRRKEMMARK 190
           + V      KE   R+
Sbjct: 168 RQVRLRRDSKEKNERR 183

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNL 56
           S + + + V +G+  VGK+ +   +       D    V   D +   + VDG   +I+ L
Sbjct: 2   SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIV 114
            +W+  G+ ++  L     +  D +++ +S+  RAS+E    +   +LRR     ++PI+
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           LVG K DL          V    ++ ++G      +    +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDL----------VRCREVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEGIV 167
Query: 175 KVV 177
           + V
Sbjct: 168 RQV 170

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 54  VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI 113
           +   +WDTAGQE Y+ + PL YRGA   ++ F  IS ++  +  K W+ +L + + N  I
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 114 VLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
           +LV  K+D  + +  + +     V   AQ   L        +I+ S+KT  N+K +F
Sbjct: 151 ILVANKIDKNKFQVDILE-----VQKYAQDNNL-------LFIQTSAKTGTNIKNIF 195

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVAVDG---SIVNL 56
           S + + + V +G+  VGK+ +   +       D    V   D +   + VDG   +I+ L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIV 114
            +W+  G+ ++  L     +  D +++ +S+  RAS+E    +   +LRR     ++PI+
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 149
Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           LVG K DL          V    ++ ++G      +    +IE S+  Q NVK +F+  +
Sbjct: 150 LVGNKSDL----------VRCREVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEGIV 198
Query: 175 KVV 177
           + V
Sbjct: 199 RQV 201

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + VG+  VGK+ +   +   +  + + P    D +   + VD   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 66  DYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL 122
           D    LR    +  D F++ FS+  R S+  V +  +  LR   P  ++P++LVG K DL
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 142
Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
              R           ++  +G  L   + +  +IE S+    N + +F+ A++ +
Sbjct: 143 ARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVAVDGSIVNLGLWDTAG 63
            K + VG+  VGK+ +    T      D+   +    D +   + VD   V L ++D   
Sbjct: 3   FKVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 64  QEDYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKL 120
           Q D    L+    +  D F++ FS+  R S+  V +  +  LR   P  ++P++LVG K 
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKS 119
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           DL   R           ++  +G  L   + +  +IE S+    N + +F+ A++ +
Sbjct: 120 DLARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT--AGQE 65
           + V +GD  VGKT +   +   +    +     D +   + VDG    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLR 123
           D S  +    +G   +V+ +S+  R S+E+   +   +LRR   A +VPI+LVG K DL 
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADL- 123
Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAA-------AYIECSSKTQQNVKAVFD 171
                            A+  E+  + G A        +IE S+  Q NV  +F+
Sbjct: 124 -----------------ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +G+  VGK+ +   +   +    + +    D +   + VD   V L ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 66  DYSR-LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL 122
           D    L+    +  D F++ FS+  R S+  V +  +  LR   P  ++P++LVG K DL
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 131
Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
              R           ++  +G  L   + +  +IE S+    N + +F+ A++ +
Sbjct: 132 ARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +    +G    GK+ + + + + +F ++Y P + D +S+   VD   V+L + DTA   D
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL-D 80
Query: 67  YSRLRPLSYRGADIFVLAFSL------ISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
             R        A  F++ +S+       S +SY  +L     E +R   ++P +L+G KL
Sbjct: 81  TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR---SIPALLLGNKL 137
Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           D+ + R           +T A+G  L  + G   +   +    ++V+ VF  A++
Sbjct: 138 DMAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MS     K + +G   VGK+ +   +   +   +        +  ++ VDG   +L ++D
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYD 60
Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGT 118
              Q+    L        D +V+ +S+  + S+E    +   +LRR     +VPI+LVG 
Sbjct: 61  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGN 119
Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
           K DL          V S  ++  +G      +    +IE S+    NV+A+F+  ++ +
Sbjct: 120 KSDL----------VRSREVSVDEGRAC-AVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 8   KCVTVGDGAVGKTCMLICYTS--NKFPTDYIPTV-FDNFSANVAVDGSIVNLGLW--DTA 62
           K   VG+  VGK+ ++  +TS  +KF  DY  T   +   A V +  + V++ L+  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN----VPIVLVGT 118
           G + Y       + G    +L F + S  S+E+  K W   L+   P+    +  VLV  
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 119 KLDLREDR 126
           K DL   R
Sbjct: 141 KTDLPPQR 148

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           ++   VG    GKT  +    S +F  D IPTV   F+      G+ V + +WD  GQ  
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPR 79
Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYE-------NVLKKWMPELRRFAPNVPIVLVGTK 119
           +  +     RG +  V       R   E       N+L K  P+L+     +P++++G K
Sbjct: 80  FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNK 133
Query: 120 LDL 122
            DL
Sbjct: 134 RDL 136

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 56  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVL 115
           L +WD AG+E++    P       +++  + L    +  +  K W+  ++  A + P++L
Sbjct: 56  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 116 VGTKLDLREDR 126
           VGT LD+ +++
Sbjct: 116 VGTHLDVSDEK 126

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 56  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVL 115
           L +WD AG+E++    P       +++  + L    +  +  K W+  ++  A + P++L
Sbjct: 58  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 116 VGTKLDLREDR 126
           VGT LD+ +++
Sbjct: 118 VGTHLDVSDEK 128

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 42  NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWM 101
            +  ++ VDG   +L ++D   Q+    L        D +V+ +S+  + S+E    +  
Sbjct: 37  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELR 95
Query: 102 PELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159
            +LRR     +VPI+LVG K DL          V S  ++  +G      +    +IE S
Sbjct: 96  VQLRRARQTDDVPIILVGNKSDL----------VRSREVSVDEGRAC-AVVFDCKFIETS 144
Query: 160 SKTQQNVKAVFDTAIKVV 177
           +    NV+A+F+  ++ +
Sbjct: 145 AALHHNVQALFEGVVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 42  NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWM 101
            +  ++ VDG   +L ++D   Q+    L        D +V+ +S+  + S+E    +  
Sbjct: 42  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELR 100
Query: 102 PELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS 159
            +LRR     +VPI+LVG K DL          V S  ++  +G      +    +IE S
Sbjct: 101 VQLRRARQTDDVPIILVGNKSDL----------VRSREVSVDEGRAC-AVVFDCKFIETS 149
Query: 160 SKTQQNVKAVFDTAIKVV 177
           +    NV+A+F+  ++ +
Sbjct: 150 AALHHNVQALFEGVVRQI 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-123
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-110
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-109
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-107
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-105
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-104
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-102
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-101
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-101
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-100
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-99
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-55
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-55
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	6e-53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-53
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-52
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-52
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-51
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-51
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-51
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-51
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-51
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-51
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-50
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-49
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-48
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-47
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-47
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	9e-47
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-46
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-46
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-46
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-44
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	9e-44
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-43
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-43
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-43
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-43
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-42
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-42
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-42
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	5e-42
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	5e-42
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-42
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	6e-42
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-42
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	7e-42
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-42
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-41
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-41
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-41
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-41
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	4e-41
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-41
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-41
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	9e-41
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-40
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-40
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-40
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-40
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-40
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-40
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	8e-40
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-39
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-39
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-39
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-34
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  346 bits (889), Expect = e-123
 Identities = 192/209 (91%), Positives = 199/209 (95%), Gaps = 3/209 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MS SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG IVNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDYSRLRPLSYRGADIFVLAFSLIS+ASYENVLKKWMPELRRFAPNVPIVLVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+GYLADH  +NVIT+ QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP
Sbjct: 124 DLRDDKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PRRKEMMARKKRHRRSSCSIARSIVCGGC 209
           PRRKE+  R+K HRRS CSIA SIVCGGC
Sbjct: 182 PRRKEVPRRRKNHRRSGCSIA-SIVCGGC 209

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  311 bits (799), Expect = e-110
 Identities = 142/180 (78%), Positives = 162/180 (90%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G+ VNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPIVLVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DLR+D+ +  DH G+  ITT QGEEL+K IGA AYIECSSK+Q+NVK VFD AI+VVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  310 bits (797), Expect = e-109
 Identities = 74/184 (40%), Positives = 114/184 (61%), Gaps = 8/184 (4%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +  K +K V VGDGAVGKTC+L+ ++  + PT Y+PTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQE+Y RLRPLSY  +D+ +L F++ +R S++N+  KW PE++ +      VLVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           LR+D        GS+ +T  +G++L +++G  AYIE SS  +  +  VF+ ++  +    
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

Query: 182 RRKE 185
              +
Sbjct: 191 PVPK 194

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  304 bits (780), Expect = e-107
 Identities = 92/187 (49%), Positives = 128/187 (68%), Gaps = 2/187 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
            +  + +KCV VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V+VDG  V L L D
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQ+++ +LRPL Y   DIF+L FS++S +S++NV +KW+PE+R   P  PI+LVGT+ 
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134

Query: 121 DLREDRGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           DLRED   L   D      +     + L ++I AA+YIECS+ TQ+N+K VFD AI   +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 179 QPPRRKE 185
           Q    ++
Sbjct: 195 QYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  299 bits (768), Expect = e-105
 Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 2/181 (1%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           + +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
           +DY RLRPL Y  A + +L F + S  S++N+  +W PE+  F   VPI++VG K DLR+
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 125 DRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 182
           D+  +      G   +T  +G+E+ + +GA AY+ECS++   NV AVF  A +V L    
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212

Query: 183 R 183
           R
Sbjct: 213 R 213

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  297 bits (763), Expect = e-104
 Identities = 85/180 (47%), Positives = 117/180 (65%), Gaps = 2/180 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+ ++ FS+ S  S EN+ +KW+PE++ F PNVPI+LV  K DLR D 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 127 GYLADH--VGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
               +   +    + T  G  +  +I A  Y+ECS+KT++ V+ VF+TA +  LQ     
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  293 bits (751), Expect = e-102
 Identities = 109/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDLR+D+
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150

Query: 127 GYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
             +          IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  291 bits (746), Expect = e-101
 Identities = 86/181 (47%), Positives = 123/181 (67%), Gaps = 3/181 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M+A +  K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VDG  V L LWD
Sbjct: 21  MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAGQEDY RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K 
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139

Query: 121 DLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           DLR+D     +   +    + + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 179 Q 179
           Q
Sbjct: 200 Q 200

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  289 bits (741), Expect = e-101
 Identities = 92/180 (51%), Positives = 133/180 (73%), Gaps = 2/180 (1%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
            +  +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V V G    LGL+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
           GQEDY RLRPLSY   D+F++ FS+++ AS++NV ++W+PEL+ +APNVP +L+GT++DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 123 REDRGYLA--DHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           R+D   LA  + +    I   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  +L P
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  286 bits (734), Expect = e-100
 Identities = 111/184 (60%), Positives = 134/184 (72%), Gaps = 2/184 (1%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
           GQEDY RLRPLSY   D+ ++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 REDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           R+D+  +          IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 PRRK 184
           P  K
Sbjct: 182 PPVK 185

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  285 bits (731), Expect = 3e-99
 Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y  +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG K DLR D 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 127 GYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKVVLQ 179
             L +  +     ++  QG  + KQIGAA YIECS+   +N V+ +F  A    + 
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  280 bits (717), Expect = 2e-97
 Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y  +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG K DLR D 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 127 GYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKVVLQ 179
             L +  +     ++  QG  + KQIGAA YIECS+   +N V+ +F  A    + 
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  274 bits (703), Expect = 6e-95
 Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 3/186 (1%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
                 K V VGD   GKT ML     + +P  Y+PTVF+N++A +  +   V L LWDT
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           +G   Y  +RPL Y  +D  +L F +    + ++ LKKW  E+  + P+  ++L+G K D
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

Query: 122 LREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVL 178
           LR D   L +  H     I+  QG  + KQ+GA  Y+E S+ T + ++ ++F TA  + L
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

Query: 179 QPPRRK 184
             P   
Sbjct: 203 NKPSPL 208

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  257 bits (659), Expect = 1e-86
 Identities = 109/183 (59%), Positives = 133/183 (72%), Gaps = 2/183 (1%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
            +A + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
           TAG EDY RLRPLSY   D+F++ FSL+S AS+ +V  KW PE+R   PN PI+LVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

Query: 121 DLREDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           DLR+D+  +          IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

Query: 179 QPP 181
            PP
Sbjct: 330 CPP 332

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  173 bits (442), Expect = 2e-55
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 22/202 (10%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M   ++ K V +G   VGKT +   +   +F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGT 118
           TAGQ++YS L      G   +VL +S+ S  S++ + +    +L        VP+VLVG 
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           K DL  +R           +   +G++L +  G A ++E S++  Q  + +F   I+ + 
Sbjct: 138 KADLSPER----------EVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEI- 185

Query: 179 QPPRRKEMMARKKRHRRSSCSI 200
               R E    ++R     C +
Sbjct: 186 ---ARVENSYGQER----RCHL 200

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  172 bits (438), Expect = 5e-55
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 18/194 (9%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M  SK  K   +G  +VGK+ + I +   +F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGT 118
           TAGQ++YS          + ++L +S+ S  S+E + K    +L        +PI+LVG 
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           K DL  +R          VI+  +G+ L +    AA++E S+K  Q    VF   I    
Sbjct: 120 KKDLHMER----------VISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEA- 167

Query: 179 QPPRRKEMMARKKR 192
               + +    + +
Sbjct: 168 ---EKMDGACSQGK 178

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  167 bits (425), Expect = 6e-53
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 16/201 (7%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
            S   K V VG   VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKL 120
           GQE+YS +R    R  + F+  F++ +  S+E++   +  +++R     +VP+VLVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ- 179
           DL   R           + T Q ++L +  G   +IE S+KT+Q V   F T ++ + + 
Sbjct: 120 DL-PSR----------TVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 180 PPRRKEMMARKKRHRRSSCSI 200
             +  +   +KK+  ++ C I
Sbjct: 168 KEKMSKDGKKKKKKSKTKCVI 188

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  166 bits (424), Expect = 6e-53
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 19/186 (10%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           S   +    G G VGK+ +++ +    F   YIPTV D +   ++ D SI  L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKL 120
              +  ++ LS      F+L +S+ SR S E + K    ++        ++PI+LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           D    R           + +++ E L +     A++E S+K   NVK +F   + +    
Sbjct: 120 DESPSR----------EVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLE--- 165

Query: 181 PRRKEM 186
            +R+ +
Sbjct: 166 -KRRTV 170

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  166 bits (422), Expect = 2e-52
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 22/206 (10%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           S   + V  G G VGK+ +++ +    F   YIPT+ D +   ++ D S+  L + DT G
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF---APNVPIVLVGTKL 120
              +  ++ LS      F+L FS+ S+ S E +       + +      ++P++LVG K 
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV--- 177
           D    R           + T + + + ++    A++E S+K   NVK +F   + +    
Sbjct: 125 DE-TQR----------EVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLETRR 172

Query: 178 ---LQPPRRKEMMARKKRHRRSSCSI 200
              L    ++    ++    +  C++
Sbjct: 173 NMSLNIDGKRSGKQKRTDRVKGKCTL 198

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  163 bits (416), Expect = 7e-52
 Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + +  F   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R L  +    F+L +SL+++ S++++ K    ++ R      VP++LVG K+DL  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R           +++++G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 124 R----------EVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVR 162

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  163 bits (416), Expect = 8e-52
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R L  +    F L +S+ +++++ ++ +    ++ R     +VP++LVG K DL ++
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R          V+   QG+ L +Q    A++E S+K++ NV  +F   ++ + +
Sbjct: 124 R----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  164 bits (418), Expect = 1e-51
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 21/202 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRED 125
           + +R   +R  + F+  FS+    S+      +  ++ R     NVP +LVG K DL + 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 134

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL--QPPRR 183
           R           ++  + +   +Q     Y+E S+KT+ NV  VF   ++ +   +    
Sbjct: 135 R----------QVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183

Query: 184 KEMMARKKR-----HRRSSCSI 200
           KE   +KKR       R  C I
Sbjct: 184 KEKNGKKKRKSLAKRIRERCCI 205

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  162 bits (413), Expect = 2e-51
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +  PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++  ++  +++R     +VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R           + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 123 R----------TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  162 bits (412), Expect = 3e-51
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R   +R  + F+  FS+    S+      +  ++ R     NVP +LVG K DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
           R           ++  + +    Q     Y+E S+KT+ NV  VF   ++ +    R +
Sbjct: 125 R----------QVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREI----RAR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  162 bits (412), Expect = 4e-51
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           S+  K V VG G VGK+ + I +  + F +DY PT+ D+++   +VDG    L + DTAG
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLD 121
           QE++  +R    R    F+L F++  R S+  V  K   ++ R     + P+VLVG K D
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           L   R           +  ++           AY E S+K + NV   F+  ++ V    
Sbjct: 126 LESQR----------QVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAV---- 170

Query: 182 RRKEM 186
           R+ + 
Sbjct: 171 RKYQE 175

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  162 bits (413), Expect = 5e-51
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 15/180 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+ ++   +  +++R     +VP+VLVG K DL   
Sbjct: 83  SAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL-PT 140

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           + T Q  EL K  G   +IE S+KT+Q V+  F T ++ + Q   +K 
Sbjct: 141 R----------TVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  162 bits (412), Expect = 5e-51
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 18/181 (9%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
           + +R   +R  + F+  FS+    S+      +  ++ R     NVP +LVG K DL + 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 138

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           ++  + +   +Q     Y+E S+KT+ NV  VF   ++ +    R ++
Sbjct: 139 R----------QVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI----RARK 183

Query: 186 M 186
           M
Sbjct: 184 M 184

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  159 bits (405), Expect = 5e-50
 Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDLRED 125
           S +R    R  D F++ +S+  +AS+E+V  ++   + R     + P++LV  K+DL   
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT-QQNVKAVFDTAIKVVLQ 179
           R           +T  QG+E+  +     YIE S+K    NV   F   ++V+ Q
Sbjct: 139 R----------KVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  158 bits (402), Expect = 2e-49
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + + +F  +Y PT+   +     +D  +V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGT 118
           TAGQED    R    R  + FVL + +  R S+E V       L       NV ++LVG 
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140

Query: 119 KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVV 177
           K DL   R           ++T +GE+L  ++   A+ ECS+ T + N+  +F    + V
Sbjct: 141 KADLDHSR----------QVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREV 189

Query: 178 LQPPRRKEM 186
               RR+ M
Sbjct: 190 ----RRRRM 194

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  153 bits (390), Expect = 7e-48
 Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++ VDG   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRED 125
             L        D +V+ +S+  + S+E    +   +LRR     +VPI+LVG K DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R           ++  +G           +IE S+    NV+A+F+  ++ +  
Sbjct: 122 R----------EVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL 164

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  153 bits (388), Expect = 2e-47
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +K   VG+ + GK+ ++  Y +  +  +  P     F   + VDG    L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRE 124
                       D  V  FSL    S++ V   +   L  F     VP+VLVGT+  +  
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
                       VI  ++  +L   +    Y E  +    NV+ VF    + V+    RK
Sbjct: 134 AN--------PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA--LRK 183

Query: 185 E 185
           +
Sbjct: 184 K 184

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  151 bits (385), Expect = 9e-47
 Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQED 66
           K + VG+  VGK+ +   +   +  + + P    D +   + VD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 67  Y-SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLR 123
               LR    +  D F++ FS+  R S+  V  + +  LR      ++P++LVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             R           ++  +G  L   +    +IE S+    N + +F+ A++ +     R
Sbjct: 144 RSR----------EVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRLRRGR 192

Query: 184 KE 185
             
Sbjct: 193 NH 194

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  151 bits (383), Expect = 9e-47
 Identities = 35/194 (18%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 60
           M +   ++   +GD   GK+ ++  + +  +      T  + +   + VDG    + + +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP----NVPIVLV 116
            AG  D           AD  +  FSL    S++  + +   +L          + + LV
Sbjct: 61  EAGAPDA-----KFSGWADAVIFVFSLEDENSFQA-VSRLHGQLSSLRGEGRGGLALALV 114

Query: 117 GT--KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           GT  ++     R          V+  A+   L   +   +Y E  +    NV  VF    
Sbjct: 115 GTQDRISASSPR----------VVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

Query: 175 KVVLQPPRRKEMMA 188
           + V+   ++++++A
Sbjct: 165 QKVVTLRKQQQLLA 178

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  150 bits (382), Expect = 2e-46
 Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 22/188 (11%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
                +    +G    GK+ + + + + +F ++Y P + D +S+   VD   V+L + DT
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVG 117
           A  +            A  F++ +S+ SR S+++    ++  L   A     ++P +L+G
Sbjct: 77  ADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134

Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ-QNVKAVFDTAIKV 176
            KLD+ + R           +T A+G  L  + G   + E S+    ++V+ VF  A++ 
Sbjct: 135 NKLDMAQYR----------QVTKAEGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAVRE 183

Query: 177 VLQPPRRK 184
                RR+
Sbjct: 184 A----RRE 187

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  149 bits (379), Expect = 4e-46
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 18/185 (9%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
              + V +GD  VGKT +   +   +    +     D +   + VDG    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 65  E--DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKL 120
           E  D S  +    +G   +V+ +S+  R S+E+   +   +LRR   A +VPI+LVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DL   R           ++  +G           +IE S+  Q NV  +F+  ++ +   
Sbjct: 122 DLARCR----------EVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQLRL- 169

Query: 181 PRRKE 185
            RR++
Sbjct: 170 -RRRD 173

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  148 bits (376), Expect = 8e-46
 Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 19/181 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED 66
           K + VG+  VGK+ +   +   +    +     ++     + VD   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 67  YS-RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLR 123
               L+    +  D F++ FS+  R S+  V  + +  LR      ++P++LVG K DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
             R           ++  +G  L   +    +IE S+    N + +F+ A++ +     R
Sbjct: 123 RSR----------EVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIR---LR 168

Query: 184 K 184
           +
Sbjct: 169 R 169

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  148 bits (375), Expect = 1e-45
 Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           ++  +    YRGA   VL FS   R S+E +   W  ++     ++P  LV  K+DL +D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                       I   + E L K++    +   S K   NV  VF    +  LQ
Sbjct: 125 S----------CIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  145 bits (369), Expect = 1e-44
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 19/186 (10%)

Query: 1   MSASKFI-KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGL 58
           M+    + K + +GDG VGK+ ++  Y +NKF T    T+  +  + ++ VDG  V + +
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 59  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPI 113
           WDTAGQE +  LR   YRG+D  +L FS+    S++N+   W  E   +A      + P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPF 119

Query: 114 VLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 173
           V++G K+D+  +R           ++T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 120 VILGNKIDI-SER----------QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

Query: 174 IKVVLQ 179
           ++ VL 
Sbjct: 169 VRRVLA 174

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  145 bits (368), Expect = 6e-44
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 15/177 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--VFDNFSANVAVDGSIVNLGLWDTAGQE 65
           K   +GDG VGKT  +      +F  +Y  T    ++    +   G+++   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
             + L+ + Y GA   +L F + SR + +N+  +W+ E +       PIV+   K+D++ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
            +           I+     E+ K      Y E S+KT  N    F    ++    P
Sbjct: 132 RQ----------KISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRP 177

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  143 bits (363), Expect = 9e-44
 Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 15/186 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+ +L+ +  N F   YI T+  D     V ++G  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YRG    ++ + + S  S+ NV K+W+ E+ +   +V  +LVG K D  E 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           +          V+ T    +   Q+G     E S+K   NV+ +F+   ++VL+   +K+
Sbjct: 129 K----------VVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLR--AKKD 175

Query: 186 MMARKK 191
            +A+++
Sbjct: 176 NLAKQQ 181

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  144 bits (365), Expect = 1e-43
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 26/191 (13%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGL---WDTA 62
           + V +G+  VGK+ +   +        +D      D +   + VDG    + L   W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKL 120
           G+ ++  L     +  D +++ +S+  RAS+E    +   +LRR     ++PI+LVG K 
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 155

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DL   R           ++ ++G           +IE S+  Q NVK +F+  ++ V   
Sbjct: 156 DLVRCR----------EVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIVRQV--- 201

Query: 181 PRRKEMMARKK 191
             R    +++K
Sbjct: 202 --RLRRDSKEK 210

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  143 bits (362), Expect = 2e-43
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 19/188 (10%)

Query: 1   MSASK--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGS-IVNL 56
           MS+ K   +K + +GD  VGKT ++  Y ++K+   Y  T+  D  +  V VDG  +  +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 57  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNV 111
            +WDTAGQE +  L    YRGAD  VL + + + +S+EN+ K W  E    A        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119

Query: 112 PIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
           P V++G K+D  E +          +++    +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESK---------KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 172 TAIKVVLQ 179
              +  LQ
Sbjct: 171 EIARSALQ 178

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  143 bits (363), Expect = 2e-43
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 19/178 (10%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V VGD +VGKTC++  + +  F      T+  D     + + G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R R ++   YR A+  +LA+ +  R+S+ +V   W+ ++R++A  N+  +L+G K D
Sbjct: 90  ---RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSD 145

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           L E R           ++ A+ + L +       IE S+K   NV+  F      ++ 
Sbjct: 146 LSELR----------EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  143 bits (364), Expect = 2e-43
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + + +F   Y+ T+  +        +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++ +
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM 186
                         A+     ++     Y + S+K+  N +  F    + ++  P  + +
Sbjct: 136 ------------VKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  141 bits (357), Expect = 1e-42
 Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 26/199 (13%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVAVDG---SIVNLGLWDTA 62
           + V +G+  VGK+ +   +       D        D +   + VDG   +I+ L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKL 120
           G+ ++  L     +  D +++ +S+  RAS+E    +   +LRR     ++PI+LVG K 
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DL   R           ++ ++G           +IE S+  Q NVK +F+  ++ V   
Sbjct: 125 DLVRXR----------EVSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQV--- 170

Query: 181 PRRKEMMARKKRHRRSSCS 199
             R    +++K  RR +  
Sbjct: 171 --RLRRDSKEKNERRLAYQ 187

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  139 bits (354), Expect = 2e-42
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  NKF   +I T+     +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  L P+ YR ++  +L + +    S++ V K W+ ELR+     + + +VG K+DL +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           +R           ++  + E   + +G A +   S+K  + ++ +F    K +++
Sbjct: 126 ER----------HVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  140 bits (354), Expect = 3e-42
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +   KF  D   T+  +  S  + V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   +L + + SR +Y  +   W+ + R  A  N+ I+L G K DL  D
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           +T  +     ++     ++E S+ T +NV+  F    + +L      E
Sbjct: 131 R----------EVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQCARKILNKIESGE 179

Query: 186 M 186
           +
Sbjct: 180 L 180

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  139 bits (353), Expect = 4e-42
 Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T  KF  D   T+  +  +  + V G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   ++ + +  R++Y ++   W+ + R    PN  I+L+G K DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R           +T  + ++  ++ G   ++E S+KT +NV+  F  A K + Q
Sbjct: 136 R----------DVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  140 bits (354), Expect = 4e-42
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  D     V ++G  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YR A+  +L + +    S+  +  +W+ E+ ++A   V  VLVG K+DL E
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R           ++  + EE  +      Y+E S+K   NV+ +F      ++   R+ 
Sbjct: 146 RR----------EVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 185 EM 186
            +
Sbjct: 195 TL 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  139 bits (353), Expect = 5e-42
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N+F  D   T+  +  +  V +  + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  +    YRGA   +L F L    +Y  V ++W+ EL   A   + ++LVG K DL +
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R           + T +     +  G   ++E S+    NV+  F+T +K +  
Sbjct: 145 AR----------EVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIFA 188

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  139 bits (353), Expect = 5e-42
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 14/181 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N+F  +   T+  +  + ++ VDG  +   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y R+    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           + T +     ++    ++IE S+    NV+  F   +  + +   +K+
Sbjct: 126 R----------AVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

Query: 186 M 186
           +
Sbjct: 175 I 175

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  139 bits (353), Expect = 5e-42
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  NKF  D   T+  +  S  V V G  V L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           +  +    YRGA   +L + + SR +Y ++   W+ + R  A PN+ ++L G K DL  +
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           +T  +     ++     ++E S+ T +NV+  F    + +L      E
Sbjct: 146 R----------EVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILNKIDSGE 194

Query: 186 M 186
           +
Sbjct: 195 L 195

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  138 bits (351), Expect = 6e-42
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +   +F      T+     +  V +D + V   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y  L P+ YRGA   ++ + + +  S+    K W+ EL+R A PN+ I L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R           +   + +          ++E S+KT  NV  +F    K + +
Sbjct: 127 R----------AVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLPK 169

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  140 bits (354), Expect = 6e-42
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 14/205 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   V L LWDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  L P   R + + V+ + + +  S++    KW+ ++R     +V I+LVG K DL +
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 135

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R           ++  +GE   K++    +IE S+K   NVK +F      +      +
Sbjct: 136 KR----------QVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGMESTQ 184

Query: 185 EMMARKKRHRRSSCSIARSIVCGGC 209
           +         +      + +  GGC
Sbjct: 185 DRSREDMIDIKLEKPQEQPVSEGGC 209

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  139 bits (352), Expect = 7e-42
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V  GD AVGK+  L+    N+F  +   T+  D     + VDG    L LWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    +R AD  +L + +    S+ N+ ++W+  +   A   VPI+LVG K D+R+
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRD 147

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                        +    GE+L    G A + E S+K   N+        + V +
Sbjct: 148 TAATEGQK----CVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKK 197

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  139 bits (352), Expect = 7e-42
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +T  +F   +  T+  +  +  V +DG  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YRGA   +L + +  R ++ ++   W+ + R+ +  N+ I+L+G K DL  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R           +   +GE   ++ G   ++E S+KT  NV+  F    K + +
Sbjct: 141 RR----------DVKREEGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEIYR 184

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  138 bits (351), Expect = 8e-42
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 20/178 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R R ++   YRGA  F+L + + ++ S+  V + W  +++ ++  N  ++LVG K D
Sbjct: 83  ---RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCD 138

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           L ++R          V+    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 139 LEDER----------VVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICE 185

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  138 bits (351), Expect = 1e-41
 Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 14/182 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  +    YRGA  F+L + + +  S+  V + W  +++ ++  N  ++LVG K D+ +
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
           +R          V+++ +G +L   +G   + E S+K   NVK  F+  + V+ +     
Sbjct: 128 ER----------VVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICEKMSES 176

Query: 185 EM 186
             
Sbjct: 177 LD 178

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  138 bits (351), Expect = 1e-41
 Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 20/218 (9%)

Query: 1   MSASK--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLG 57
           M++ K   +K + +GD  VGKT ++  Y + KF   Y  T+  D  +  V VD  +V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 58  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVP 112
           +WDTAGQE +  L    YRGAD  VL F + +  +++ +   W  E    A      N P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119

Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
            V++G K+DL   +           + T + +          Y E S+K   NV+  F T
Sbjct: 120 FVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168

Query: 173 AIKVVLQPPRRKEMMARKKRHRRSSCSIARSIVCGGCA 210
             +  L+     E+        +   +         C+
Sbjct: 169 IARNALKQETEVELYNEFPEPIKLDKNERAKASAESCS 206

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  138 bits (350), Expect = 1e-41
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 19/178 (10%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T + F      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R   ++   YR A   +L + +  + +++++  KWM  + ++A  +  ++LVG KLD
Sbjct: 87  ---RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLD 142

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
              DR           IT  QGE+  +QI    + E S+K   NV  +F   +  +L+
Sbjct: 143 CETDR----------EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  137 bits (348), Expect = 2e-41
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 20/180 (11%)

Query: 1   MSASKF------IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSI 53
           MS+  F       K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 54  VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVP 112
           V L LWDTAGQE +  L P   R + + V+ + + +  S+     KW+ ++R     +V 
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVI 121

Query: 113 IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           I+LVG K DL + R           ++T +GE   K++    +IE S+K   NVK +F  
Sbjct: 122 IMLVGNKTDLSDKR----------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 170

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  137 bits (348), Expect = 2e-41
 Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 14/180 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K V +GD   GK+ +++ +  ++F      T+    FS  +AV+ + V   +WDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            Y  L P+ YRGA   ++ F + ++AS+E   KKW+ EL+    PN+ + L G K DL +
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R           +T    +   ++ G   ++E S+KT  NVK +F    + + +    +
Sbjct: 132 AR----------KVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  137 bits (347), Expect = 3e-41
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 20/178 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R R ++   YRGA  F+L + + +  S+  V + W  +++ ++  N  ++LVG K D
Sbjct: 84  ---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCD 139

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           + E+R          V+ T +G+ L +Q+G   + E S+K   +V+  F+  +  +  
Sbjct: 140 MEEER----------VVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAICD 186

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  137 bits (347), Expect = 4e-41
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N+F  +   T+  +  + ++ VDG  +   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR  
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R           + T +     ++ G  ++IE S+    NV+A F T + 
Sbjct: 150 R----------AVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILT 188

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  137 bits (347), Expect = 4e-41
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  + +   YI T+  D     + +DG  + L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL  
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            +          V+     +E    +G   ++E S+K   NV+  F T    + +
Sbjct: 153 KK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 196

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  138 bits (349), Expect = 4e-41
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N+F  D   T+  +  +  + ++G  +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A  NV + L+G K DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           + T + +   ++     + E S+   +NV   F+  I  + Q   + +
Sbjct: 134 R----------AVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIYQKVSKHQ 182

Query: 186 M 186
           M
Sbjct: 183 M 183

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  136 bits (345), Expect = 6e-41
 Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 20/178 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + +I T+  +F    + +DG  + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R R ++   YRGA   +L + + +  S++N+ + W+  +   A  +V  +++G K D
Sbjct: 69  ---RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCD 124

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           + + R           ++  +GE+L    G   ++E S+K   NV+  F T  + +  
Sbjct: 125 VNDKR----------QVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKA 171

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  136 bits (344), Expect = 9e-41
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 14/168 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           +K   +GD  VGK+ ++  +  + F  +  PT+     +  V     +    +WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  L P+ YRG+   V+ + +  + S+  + KKW+ EL+     N+ + + G K DL +
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSD 142

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
            R           +     +E  + IG A  +E S+K   N++ +F  
Sbjct: 143 IR----------EVPLKDAKEYAESIG-AIVVETSAKNAINIEELFQG 179

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  136 bits (344), Expect = 1e-40
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  + +   YI T+  D     + +DG  + L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG K DL  
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            +          V+     +E    +G   ++E S+K   NV+  F T    + +     
Sbjct: 136 KK----------VVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

Query: 185 EM 186
             
Sbjct: 185 AT 186

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  136 bits (345), Expect = 1e-40
 Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V +DG  V L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YRG+   ++ + +  + S+  V K W+ E+ R+A   V  +LVG K DL++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R          V+     +E         ++E S+    NV+  F T  + + +   ++
Sbjct: 128 KR----------VVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 185 EM 186
            +
Sbjct: 177 NL 178

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  135 bits (342), Expect = 2e-40
 Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 34/198 (17%)

Query: 1   MSASKF---IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----------FDNFSAN 46
           MS   +   IK + +GD  VGKT +L  YT  KF + +I TV             N    
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 47  VAVDGSIVNLGLWDTAGQEDYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPE 103
               G  ++L LWDTAG E   R R L+   +R A  F+L F L +  S+ NV + W+ +
Sbjct: 63  AVGRGQRIHLQLWDTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQ 118

Query: 104 LRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK 161
           L+  A   N  IVL G K DL + R           +   +  EL ++ G   Y E S+ 
Sbjct: 119 LQMHAYSENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYG-IPYFETSAA 167

Query: 162 TQQNVKAVFDTAIKVVLQ 179
              N+    +  + ++++
Sbjct: 168 NGTNISHAIEMLLDLIMK 185

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  134 bits (340), Expect = 2e-40
 Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           +K   +GD  VGK+ ++  +  + F  +  PT+     +  V     +    +WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  L P+ YRG+   ++ + +    ++  + K W+ ELR+   P++ + + G K DL +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTD 125

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            R           +     ++    I  A ++E S+K   N+  +F    + +  
Sbjct: 126 VR----------EVMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIPS 169

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  135 bits (342), Expect = 4e-40
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 15/184 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            +  +    YRGA   +L + +    ++ N+ K+W   +   A     ++LVG K D+ E
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
            R          V+T  QGE L K++G   +IE S+K   NV  +F T  K++ +     
Sbjct: 139 TR----------VVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

Query: 185 EMMA 188
           +++ 
Sbjct: 188 KLVG 191

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  133 bits (338), Expect = 4e-40
 Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 21/178 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 66  DYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 121
              R R ++   YRGA   +L + +    ++ N+ K+W   +   A     ++LVG K D
Sbjct: 64  ---RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           + E R          V+T  QGE L K++G   +IE S+K   NV  +F T  K++ +
Sbjct: 120 M-ETR----------VVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 165

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  133 bits (338), Expect = 8e-40
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 16/182 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T + F  +   T+  D     ++VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLR 123
            +  L P  YRGA   +L + +  R ++  +   W+ EL  +    ++  +LVG K+D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 183
           E+R           +   +G +  ++     +IE S+KT   V+  F+  ++ ++Q P  
Sbjct: 134 ENR----------EVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 184 KE 185
            E
Sbjct: 183 WE 184

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  133 bits (336), Expect = 1e-39
 Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 21/179 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTV-FDNFSANVAVDGSIVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    +I TV  D  +  + VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 65  EDYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKL 120
           E   R R ++   YR A   +L + + ++AS++N+ + W+ E+  +A  +V ++L+G K+
Sbjct: 71  E---RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKV 126

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           D   +R          V+    GE+L K+ G   ++E S+KT  NV   F    K + +
Sbjct: 127 DSAHER----------VVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKR 174

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  132 bits (335), Expect = 2e-39
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 18/184 (9%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSI-VNLGLWDTAGQ 64
           +K V +GDGA GKT +  C+    F   Y  T+  D F   + + G++ V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKL 120
               ++      GA   +L + + +  S+EN+ + W   +++ +        + LVG K+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           DL   R           I   +     ++ G  +    S+KT  +V   F      +L  
Sbjct: 126 DLEHMR----------TIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGI 174

Query: 181 PRRK 184
              K
Sbjct: 175 KLNK 178

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  133 bits (337), Expect = 2e-39
 Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSI----------VN 55
           IK + +GD  VGKT  L  YT NKF   +I TV  D     V  +             V+
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 56  LGLWDTAGQEDYSRLRPLS---YRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PN 110
           L LWDTAGQE   R R L+   +R A  F+L F L S+ S+ NV + WM +L+  A   N
Sbjct: 86  LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141

Query: 111 VPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 170
             IVL+G K DL + R           +   Q  EL  + G   Y E S+ T QNV+   
Sbjct: 142 PDIVLIGNKADLPDQR----------EVNERQARELADKYG-IPYFETSAATGQNVEKAV 190

Query: 171 DTAIKVVLQ 179
           +T + ++++
Sbjct: 191 ETLLDLIMK 199

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  132 bits (334), Expect = 2e-39
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 17/183 (9%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSA-NVAVDGS---IVNLGLWD 60
           +K + VG+   GKT +L      K         TV  +     + +       + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 61  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 120
            AG+E++    P       +++  + L    +  + +K W+  ++  A + P++LVGT L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIG----AAAYIECSSKTQQNVKAVFDTAIKV 176
           D+ +++             +   +EL  + G       +   +++    +  +  T I  
Sbjct: 123 DVSDEK-------QRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

Query: 177 VLQ 179
            L 
Sbjct: 176 SLN 178

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  130 bits (329), Expect = 3e-38
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 21/196 (10%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLI--CYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLG 57
           ++A+   K   VG+  VGK+ ++       +KF  DY  T   +   A V +  + V++ 
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 58  LW--DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA----PNV 111
           L+  DTAG + Y       + G    +L F + S  S+E+  K W   L+         +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133

Query: 112 PIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK-TQQNVKAVF 170
             VLV  K DL   R         + +     ++         + + S+    ++  A F
Sbjct: 134 RAVLVANKTDLPPQR---------HQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPF 183

Query: 171 DTAIKVVLQPPRRKEM 186
            +      +    K  
Sbjct: 184 LSIATTFYRNYEDKVA 199

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  126 bits (318), Expect = 9e-37
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 25/183 (13%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGKTC+   + + +FP     T+  D     V +DG  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 66  DYSRLR----PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTK 119
              R R       YR     V  + + + AS+ ++   W+ E ++     ++P +LVG K
Sbjct: 81  ---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNK 136

Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ---QNVKAVFDTAIKV 176
            DLR              + T   ++           E S+K      +V+A+F T    
Sbjct: 137 CDLRSAI----------QVPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHK 185

Query: 177 VLQ 179
           +  
Sbjct: 186 LKS 188

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  119 bits (301), Expect = 1e-34
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V ++   V   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRE 124
            ++ L P  YR A   ++ + +    S+    + W+ EL   A  ++ I LVG K+D  +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
           +        G   +   +GE+L ++ G   + E S+KT +NV  VF  
Sbjct: 123 EG-------GERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLG 162

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  124 bits (312), Expect = 2e-33
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 24/185 (12%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---------ANVAVDGSIVNLG 57
           IK   +GDG  GKT +L       F      T   N                +       
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 58  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVG 117
            WD  GQE            + +++L        +  N    W+  + ++    P+++V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSN-KHYWLRHIEKYGGKSPVIVVM 157

Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K+D                I   +  E    I    +   S K    V+++  +    V
Sbjct: 158 NKIDENPSY----------NIEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAV 206

Query: 178 LQPPR 182
           L P  
Sbjct: 207 LHPDS 211

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  116 bits (292), Expect = 1e-32
 Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 52/217 (23%)

Query: 1   MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDG-------- 51
           M      K V +G+ +VGK+ +++  T + F  +   T+     +  V ++         
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 52  -----------------------------SIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82
                                          +   +WDTAGQE Y+ + PL YRGA   +
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 83  LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ 142
           + F + +  + +   K W+ +L+    N  I+LV  K+D                +   +
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKF----------QVDILE 168

Query: 143 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            ++  +      +I+ S+KT  N+K +F    + + +
Sbjct: 169 VQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 74.3 bits (182), Expect = 2e-16
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 28/175 (16%)

Query: 18  GKTCMLICYTSNKFPTD-----YIPTVFDNFSANVAVD----GSIVNLGLWDTAGQEDYS 68
              C +      +F  D     +  T    +    A         +     D  G E   
Sbjct: 92  CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDF 151

Query: 69  R--LRPLSYRGADIFVLAF--SLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL 122
                P      D F+L    S     ++++   K++  L         PIV+V TK D 
Sbjct: 152 EQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
             +R           I  A    L K+      +E S+++  NV   F T ++++
Sbjct: 211 GVER----------YIRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQLI 253

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 60.4 bits (146), Expect = 3e-11
 Identities = 28/195 (14%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           K + +G    GK+ M     SN    D      T+  +   +       + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 65  EDY-----SRLRPLSYRGADIFVLAFSLISRASYENV--LKKWMPELRRFAPNVPIVLVG 117
           + +     ++ +   ++   + +  F + S    +++    K + +LR+++P+  I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 118 TKLDLREDRGYLADHVGSN--VITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI- 174
            K+DL +      D       ++     E   +          +S   +++   +   + 
Sbjct: 123 HKMDLVQL-----DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVC 177

Query: 175 KVVLQPPRRKEMMAR 189
            ++      +  + +
Sbjct: 178 SLIPNMSNHQSNLKK 192

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 35/195 (17%)

Query: 5   KFIKCVTVGDGAVGKTCML----------ICYTSNKFPTDYIPTVFDNFSANV--AVDGS 52
              K V  G G  GKT  L                   T+   T+F +F       V G 
Sbjct: 13  INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72

Query: 53  IVNLGLWDTAGQEDYSRLRPLSYRGAD--IFVL---AFSLISRASYENVLKKWMPELRRF 107
                L+   GQ  Y+  R L  RG D  +FV       L + A     +++ + E    
Sbjct: 73  KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 108 APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA---YIECSSKTQQ 164
             +VPIV+   K DL             + +     E +R  +        +E  +   +
Sbjct: 133 LDDVPIVIQVNKRDLP------------DALPV---EMVRAVVDPEGKFPVLEAVATEGK 177

Query: 165 NVKAVFDTAIKVVLQ 179
            V        ++VL 
Sbjct: 178 GVFETLKEVSRLVLA 192

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
            + + +G    GK+ +         P +      T       +   + S VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLI----SRASYENV---LKKWMPELRRFAPNVPIVLV 116
           Q D+      ++    IF    +LI    ++  Y      L   + +  +  P++   + 
Sbjct: 79  QMDF---FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135

Query: 117 GTKLDL 122
             K+D 
Sbjct: 136 IHKVDG 141

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 12  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVD--GSIVNLGLWDTAGQEDYSR 69
           +G    GK+ +      N  P D   T++   ++N +++   ++++L + +  GQ +Y  
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD---TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFE 61

Query: 70  L-----RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
                 R     GA ++V+        +  N L   +    +  P++ I ++  K+D 
Sbjct: 62  PSYDSERLFKSVGALVYVIDSQDEYINAITN-LAMIIEYAYKVNPSINIEVLIHKVDG 118

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 28/124 (22%)

Query: 12  VG-DGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVA-VDGSIVNLGLWDTAGQEDYS 68
           VG   + GKT  +    S +F  D IPTV F     N+  +    V + LWD  GQ    
Sbjct: 28  VGLQYS-GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQP--- 78

Query: 69  RLRPL---SYRGAD--IFVLAFS-----LISRASYENVLKKWMPELRRFAPNVPIVLVGT 118
           R R +     RG    ++++  +       S+    N+L K  P+L+     +P++++G 
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGN 132

Query: 119 KLDL 122
           K DL
Sbjct: 133 KRDL 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 72/239 (30%)

Query: 10  VTV-GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSI--VNLGLWDTAG--- 63
           V + G    GKT + +              V  ++     +D  I  +NL   ++     
Sbjct: 153 VLIDGVLGSGKTWVAL-------------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 64  ---QEDYSRLRPLSYRGADIFVLAFS-----------LISRASYEN---VLKK-WMPE-L 104
              Q+   ++ P     +D                  L+    YEN   VL      +  
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 105 RRFAPNVPIVLVGTKLDLREDRGYLADHVGSNV------------ITTAQGEELRKQIGA 152
             F  +  I L+ T+      +  + D + +              +T  + + L      
Sbjct: 260 NAFNLSCKI-LLTTR-----FKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSL-----L 307

Query: 153 AAYIECSSKT--QQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCS-----IARSI 204
             Y++C  +   ++ V       + ++      ++ +A     +  +C      I  S+
Sbjct: 308 LKYLDCRPQDLPRE-VLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.75
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.71
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.71
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.68
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.64
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.63
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.62
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.6
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.56
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.51
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.5
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.5
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.47
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.34
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.25
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.17
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.15
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.86
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.86
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.79
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.78
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.71
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.66
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.53
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.48
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.35
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.17
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.89
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.86
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.79
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.77
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.6
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.29
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.23
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.17
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.15
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.14
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.11
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.09
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.09
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.08
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.07
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.06
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.05
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.05
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.01
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.0
2xxa_A	433	Signal recognition particle protein; protein trans	96.99
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.98
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.98
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.97
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.96
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.9
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.86
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.85
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.85
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.83
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.83
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.81
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.8
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.79
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.77
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.77
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.76
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.75
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.74
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.72
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.71
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.71
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.7
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.69
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.68
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.68
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.67
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.67
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.67
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.66
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.65
1g6h_A	257	High-affinity branched-chain amino acid transport	96.64
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.64
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.63
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.62
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.61
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.61
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.61
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.6
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.6
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.59
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.59
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.58
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.58
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.58
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.57
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.57
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.57
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.56
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.56
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.56
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.55
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.55
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.54
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.54
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.54
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.53
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.53
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.53
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.53
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.53
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.52
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.51
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.49
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.49
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.49
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.48
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.48
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.47
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.47
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.46
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.45
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.44
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.43
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.42
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.42
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.41
1via_A	175	Shikimate kinase; structural genomics, transferase	96.41
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.39
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.38
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.38
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.37
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.37
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.37
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.36
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.35
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.34
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.34
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.33
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.32
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.31
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.3
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.28
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.26
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.25
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.25
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.24
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.24
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.24
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.23
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.23
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.22
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.21
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.2
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.2
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.19
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.19
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.18
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.18
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.17
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.17
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.16
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.15
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.15
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.12
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.11
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.11
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.11
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.11
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.11
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.11
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.1
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.1
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.1
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.1
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.09
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.09
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.04
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.04
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.02
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.01
3bos_A	242	Putative DNA replication factor; P-loop containing	96.0
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.99
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.99
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.98
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.98
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.93
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.93
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.92
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.87
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.86
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.84
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.84
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.84
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.83
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.81
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.8
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.76
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.76
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.73
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.72
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.71
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.7
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.69
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.69
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.68
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.66
2og2_A	359	Putative signal recognition particle receptor; nuc	95.65
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.64
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.63
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.59
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.55
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.54
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.52
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.48
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.48
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.45
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.43
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.39
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.36
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.35
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.34
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.33
3co5_A	143	Putative two-component system transcriptional RES	95.33
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.32
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.29
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.28
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.28
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.26
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.25
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.25
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.23
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.23
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.23
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.2
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.2
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.2
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.2
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.18
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.16
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.14
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.03
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.99
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.99
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.97
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.97
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.97
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.96
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.92
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.92
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.92
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.92
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.89
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.87
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.85
2qgz_A	308	Helicase loader, putative primosome component; str	94.84
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.82
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.82
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.78
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.77
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.76
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.75
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.74
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.74
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.74
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.73
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.72
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.69
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.69
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.67
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.66
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.64
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.61
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.59
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.58

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.1e-41  Score=253.33  Aligned_cols=166  Identities=28%  Similarity=0.484  Sum_probs=141.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+.+||+|+|++|||||||+++|..+.|...+.+|.+. ...+.+.+++..+.++||||+|+++|.++++.+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            46789999999999999999999999999999999874 45667788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++++|+.+ ..|+..+.... +++|++|||||+|+.+.+.          ++.++++++++.+++ +|+++||+
T Consensus        91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk  158 (216)
T 4dkx_A           91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK  158 (216)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence            99999999999999 88888887655 7899999999999987665          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 028239          162 TQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +|.||+++|+.|++.+....
T Consensus       159 tg~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          159 AGYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             TTBSHHHHHHHHHHHC----
T ss_pred             CCcCHHHHHHHHHHHHHhhh
Confidence            99999999999999986543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-40  Score=247.65  Aligned_cols=209  Identities=89%  Similarity=1.348  Sum_probs=155.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |+..+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++++|+
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            67778999999999999999999999999998888888888777777888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +++|||+++++++..+...|+..+....++.|+++|+||+|+...+.....  ..+.+..+++.++++.++..+|+++||
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999845899999888789999999999999765421000  112357888899999998669999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhhHHHHhhhcccCCcccccccccccccCC
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRRSSCSIARSIVCGGCAA  211 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  211 (211)
                      ++|.|++++|+++++.+.+...+++....+++++.+.|+++.+-+-|+|+|
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  212 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIASIVCGGCTAA  212 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-------------------------------
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEehHhhcccccC
Confidence            999999999999999999988777766666677788999996666677664

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=3.3e-36  Score=220.33  Aligned_cols=185  Identities=32%  Similarity=0.558  Sum_probs=152.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ++.+||+++|++|+|||||+++|.++.+...+.++..+.+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999998888899888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+ ..|...+....  ++.|+++|+||+|+....           +..+++..+++..+. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999998 78888887754  589999999999997543           678888999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhHHHHhhh-cccCCccccc
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKEMMARKK-RHRRSSCSIA  201 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~-~~~~~~c~~~  201 (211)
                      +|.|++++|+++.+.+.....+......++ ++++.+|.++
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            999999999999999987655554433333 3334556553

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.8e-35  Score=215.30  Aligned_cols=170  Identities=31%  Similarity=0.441  Sum_probs=152.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |.+.+.+||+++|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            77888999999999999999999999999998999999888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      +++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+...+.          +..+++.++++..+. +|+++
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES  148 (181)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence            9999999999999999 78888876654  5899999999999976654          888999999999998 99999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCCch
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ||++|.|++++|+++++.+.....
T Consensus       149 Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          149 SAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999977543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=3.3e-35  Score=216.39  Aligned_cols=172  Identities=42%  Similarity=0.809  Sum_probs=155.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+.+||+++|.+|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            45679999999999999999999999999889999998888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      +|||++++.++..+...|...+....++.|+++|+||+|+....        .+.+..+++.++++.++...|+++||++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999997678999998888899999999999997532        1237889999999999984499999999


Q ss_pred             CCCHHHHHHHHHHHHcCCch
Q 028239          163 QQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~~~  182 (211)
                      |.|++++|+++++.+...+.
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=220.17  Aligned_cols=170  Identities=30%  Similarity=0.476  Sum_probs=145.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |...+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            55667899999999999999999999999998888888888777777777888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      +++|||+++++++..+ ..|+..+....  +++|+++|+||+|+...+.          +...++..+++..+. +|+++
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  166 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES  166 (201)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999999 78888887654  5899999999999987654          788899999999998 99999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCCch
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ||++|.|++++|++|.+.+.+...
T Consensus       167 Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          167 SARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             eCCCCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999999976543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=220.01  Aligned_cols=165  Identities=32%  Similarity=0.554  Sum_probs=150.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+|+|++|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            45789999999999999999999999998888899888887888889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+...+.          +..+++.++++..+. +++++||+
T Consensus        92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (206)
T 2bov_A           92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  159 (206)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence            9999999999998 88888887765  4899999999999977554          778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|++|++.+.+.
T Consensus       160 ~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-35  Score=214.75  Aligned_cols=177  Identities=51%  Similarity=0.970  Sum_probs=153.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            34679999999999999999999999999888888888777777888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++.++++..+..+|+++||
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  174 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence            99999999999998448999998877899999999999997642110  1111223478889999999998768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|+++++.++.
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          175 LTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=5.8e-36  Score=217.87  Aligned_cols=179  Identities=79%  Similarity=1.273  Sum_probs=135.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |++.+.+||+++|++|+|||||++++.++.+...+.+|.+..+...+.+++..+.+++||+||++++...+..+++++|+
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            67788999999999999999999999999988888888877666566677778889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+...........+..+++.++++.++..+|+++||
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999984479999988777899999999999976543111111223357788899999998669999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|+++++.+++
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=5.7e-35  Score=216.20  Aligned_cols=178  Identities=52%  Similarity=0.870  Sum_probs=144.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..+++++|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            45689999999999999999999999998888888888888788888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++.++..+|+++||
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            99999999999998448999998887899999999999997632100  0001123477888999999998779999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 028239          161 KTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++|.|++++|+++++.+.+.
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999988643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=4.3e-35  Score=219.20  Aligned_cols=180  Identities=36%  Similarity=0.627  Sum_probs=152.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ...+||+|+|.+|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            45799999999999999999999999999999999988888788888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||+++++++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++.++++..+..+|+++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            9999999999994489999999888899999999999997631100  00111234888999999999997789999999


Q ss_pred             CCCC-HHHHHHHHHHHHcCCchh
Q 028239          162 TQQN-VKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       162 ~~~~-v~~lf~~l~~~~~~~~~~  183 (211)
                      +|.| |+++|+++++.+......
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC----
T ss_pred             CCcccHHHHHHHHHHHHhccCcC
Confidence            9998 999999999999876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.6e-35  Score=213.11  Aligned_cols=177  Identities=38%  Similarity=0.711  Sum_probs=151.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+.+||+++|++|+|||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.|...+..+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            46789999999999999999999999999888888888777777788888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+.......  ......+.++.+++.++++.++..+|+++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999998678988888877899999999999997532100  0011123478889999999998669999999


Q ss_pred             C-CCCCHHHHHHHHHHHHcC
Q 028239          161 K-TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~-~~~~v~~lf~~l~~~~~~  179 (211)
                      + ++.|++++|+.+++.++.
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=7.8e-35  Score=213.39  Aligned_cols=165  Identities=25%  Similarity=0.425  Sum_probs=143.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ++.+.+||+|+|.+|+|||||+++|+++.+...+.+|.+..+...+.+++..+.+++||+||++.+... ..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            456789999999999999999999999999888999988887777888999999999999999988875 5688999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      ++|||++++++++.+ ..|+..+....    ++.|+++|+||+|+...+.          ++.+++.++++..+. +|++
T Consensus        96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e  163 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE  163 (187)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence            999999999999998 78888887653    5899999999999976554          788899999999998 9999


Q ss_pred             ecC-CCCCCHHHHHHHHHHHHcC
Q 028239          158 CSS-KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       158 ~sa-~~~~~v~~lf~~l~~~~~~  179 (211)
                      +|| ++|.|++++|+.+++.+.+
T Consensus       164 ~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             EeecCccccHHHHHHHHHHHHhh
Confidence            999 8999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.9e-34  Score=213.24  Aligned_cols=171  Identities=29%  Similarity=0.581  Sum_probs=150.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .++.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45679999999999999999999999998887777775444 45677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||
T Consensus        85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  152 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSA  152 (206)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 78988887765 6899999999999987554          778888899999887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhhH
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      ++|.|++++|++|.+.+.+......
T Consensus       153 ~~g~gi~~l~~~l~~~i~~~~~~~~  177 (206)
T 2bcg_Y          153 LDSTNVEDAFLTMARQIKESMSQQN  177 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999977655443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.8e-34  Score=210.54  Aligned_cols=180  Identities=61%  Similarity=1.019  Sum_probs=154.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            35799999999999999999999999998888888887777778889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++..+..+++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            9999999999998447999998877899999999999997642110  11112234778888999999886699999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchh
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~  183 (211)
                      +|.|++++|+++.+.+.+...+
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~  184 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPPPV  184 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCCC-
T ss_pred             CccCHHHHHHHHHHHHhccccc
Confidence            9999999999999999876544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.4e-34  Score=210.04  Aligned_cols=166  Identities=20%  Similarity=0.316  Sum_probs=141.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |+..+.+||+++|++|+|||||+++|.++.+.. +.+|.++.+...+.+++..+.+++||+||+++     ..+++++|+
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            677789999999999999999999999999876 67787777778888899999999999999987     457888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      +++|||+++++++..+ ..|+..+....    +++|+++|+||+|+....        .+.+..+++.++++..+..+|+
T Consensus        76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence            9999999999999998 77765555432    589999999999995311        1237888899999888555999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++||++|.|++++|+++++.+....
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.2e-34  Score=209.84  Aligned_cols=165  Identities=34%  Similarity=0.553  Sum_probs=149.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+.+||+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            34679999999999999999999999999999999988888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++.++++.++. +|+++||
T Consensus        95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  162 (183)
T 3kkq_A           95 IVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSA  162 (183)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEecc
Confidence            99999999999998 78887776532  6899999999999987554          888999999999996 9999999


Q ss_pred             C-CCCCHHHHHHHHHHHHcC
Q 028239          161 K-TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~-~~~~v~~lf~~l~~~~~~  179 (211)
                      + ++.|++++|+++.+.+.+
T Consensus       163 ~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          163 KDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SSSCBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            9 999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2.6e-34  Score=210.13  Aligned_cols=164  Identities=24%  Similarity=0.364  Sum_probs=142.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .+.+.+||+|+|++|+|||||+++|+++.+...+.+| ...+...+.+++..+.+++||++|++.+.     +++.+|++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            4567899999999999999999999999988888887 44556788899999999999999998876     77889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      ++|||++++.+|+.+ ..|+..+....  ++.|+++|+||+|+....        .+.+..+++.++++.++..+|+++|
T Consensus        90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S  160 (184)
T 3ihw_A           90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC  160 (184)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence            999999999999998 78999888764  589999999999995321        1237889999999999855999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~  180 (211)
                      |++|.|++++|+++++.+.+.
T Consensus       161 a~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          161 ATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.6e-34  Score=205.52  Aligned_cols=166  Identities=31%  Similarity=0.611  Sum_probs=139.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +.++.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            356789999999999999999999999998877777775444 4567778888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++|
T Consensus        82 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  149 (170)
T 1z08_A           82 AILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTS  149 (170)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEec
Confidence            9999999999999998 78888877654 5899999999999977544          778889999999987 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|.|++++|+++.+.+.+
T Consensus       150 a~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          150 AKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=215.04  Aligned_cols=178  Identities=42%  Similarity=0.835  Sum_probs=133.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++|+|||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            35799999999999999999999999988888888887777788889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.++.+++.++++..+..+|+++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            9999999999998458999998877899999999999997653210  01112234778889999999987699999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 028239          162 TQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +|.|++++|+++++.+.+.+
T Consensus       192 ~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=207.02  Aligned_cols=168  Identities=31%  Similarity=0.554  Sum_probs=147.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .+..+||+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999988777777765 44456778899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||+|+...+.          +...++..++...+. +++++||+
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (181)
T 3tw8_B           86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK  153 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            999999999999998 889999988878999999999999987654          778889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +|.|++++|+++.+.+.....
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999865433

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=4.6e-34  Score=204.84  Aligned_cols=163  Identities=29%  Similarity=0.548  Sum_probs=145.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999988888888877777778888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||++++.++..+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++.++++.++..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999998 77877776642  5899999999999977554          7788889999988445999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 028239          163 QQNVKAVFDTAIKVVL  178 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~  178 (211)
                      |.|++++|+++.+.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-34  Score=213.35  Aligned_cols=176  Identities=38%  Similarity=0.715  Sum_probs=150.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ...+||+++|++|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++.+|++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            56799999999999999999999999998888888887777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.++.+++.++++.++..+|+++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            9999999999998668988888877899999999999997532100  00111234788889999999885599999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 028239          162 -TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 -~~~~v~~lf~~l~~~~~~  179 (211)
                       ++.|++++|+.+++.++.
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=210.51  Aligned_cols=180  Identities=47%  Similarity=0.836  Sum_probs=148.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ....+||+++|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            34578999999999999999999999998888888887777667788998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++..+++..+..+++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA  181 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence            99999999999998668888888877899999999999997642110  1111223477888899999988778999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCch
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ++|.|++++|++|.+.+..+..
T Consensus       182 ~~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          182 KTKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             TTCTTHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=5e-34  Score=204.61  Aligned_cols=163  Identities=32%  Similarity=0.566  Sum_probs=144.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999999888888888888777788899989999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||+++++++..+ ..|+..+....  .+.|+++|+||+|+...+.          +..+++.++++..+. +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 78888777665  3899999999999977554          778889999999987 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      |.|++++|+++.+.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-34  Score=213.15  Aligned_cols=167  Identities=26%  Similarity=0.480  Sum_probs=146.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ....++|+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            45679999999999999999999999998888888887777777788888899999999999999998888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +|||++++.++..+ ..|+..+....   ++.|+++|+||+|+....           +..+++..+++.++. +++++|
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S  151 (199)
T 2gf0_A           85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETS  151 (199)
T ss_dssp             EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEe
Confidence            99999999999988 66766665542   478999999999997632           677888889999887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCch
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      |++|.|++++|++|++.+.....
T Consensus       152 a~~~~gi~~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          152 AKMNYNVKELFQELLTLETRRNM  174 (199)
T ss_dssp             TTTTBSHHHHHHHHHHHCSSSCE
T ss_pred             cCCCCCHHHHHHHHHHHHhhhhc
Confidence            99999999999999998877643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=4.3e-34  Score=207.57  Aligned_cols=166  Identities=33%  Similarity=0.537  Sum_probs=148.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+.++|+++|.+|+|||||+++|++..+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45679999999999999999999999999889999988888788888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-hC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRR-FA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.++..+ ..|+..+.. .. .+.|+++|+||+|+...+.          +..+++..++...+. +++++||
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  153 (181)
T 2fn4_A           86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  153 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            99999999999998 777777643 33 5899999999999977554          778888899988887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 028239          161 KTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++|.|++++|++|.+.+.+.
T Consensus       154 ~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.6e-33  Score=208.66  Aligned_cols=176  Identities=48%  Similarity=0.874  Sum_probs=152.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ...+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            45789999999999999999999999988888888877776777889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+...|...+....++.|+++|+||+|+.......  ......+.+..+++.++++..+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            9999999999998678888888877899999999999997652211  11112234778889999999987789999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.|++++|++|.+.+++
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.8e-34  Score=209.29  Aligned_cols=164  Identities=29%  Similarity=0.614  Sum_probs=117.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4679999999999999999999999888777667765444 456778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++..+. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  153 (183)
T 2fu5_C           86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  153 (183)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999998 78988887764 6899999999999976543          778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.|++++|++|.+.+.+
T Consensus       154 ~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKA  171 (183)
T ss_dssp             --CCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999999865

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=211.98  Aligned_cols=173  Identities=31%  Similarity=0.533  Sum_probs=141.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      ..+..+||+|+|++++|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            345679999999999999999999999998877777765444 4567788888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +|+|||++++.+++.+ ..|+..+.... ++.|++||+||+|+...+.          +..+++.++++..+. +|+++|
T Consensus        89 vilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  156 (223)
T 3cpj_B           89 ALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETS  156 (223)
T ss_dssp             EEEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999998 88988887765 5899999999999976543          778888999999887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      |+++.|++++|++|++.+.+.....+.
T Consensus       157 a~~~~gi~~l~~~l~~~i~~~~~~~~~  183 (223)
T 3cpj_B          157 ALNSENVDKAFEELINTIYQKVSKHQM  183 (223)
T ss_dssp             CC-CCCHHHHHHHHHHHHTTCC-----
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhccc
Confidence            999999999999999999887666554

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=4.7e-34  Score=212.04  Aligned_cols=175  Identities=61%  Similarity=1.032  Sum_probs=150.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+.+||+++|.+|+|||||+++|.++.+...+.++..+.+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            34679999999999999999999999999989999988888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.++..+...|+..+....++.|+++|+||+|+.......  ..+...+.+..+++..+++..+..+++++||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  186 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence            99999999999998448999998888899999999999997653211  1122233477888999999999878999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028239          161 KTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~  177 (211)
                      ++|.|++++|+++++.+
T Consensus       187 ~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          187 LTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCTTHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.8e-34  Score=211.12  Aligned_cols=165  Identities=30%  Similarity=0.554  Sum_probs=146.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+++|++|+|||||+++|+++.+...+.+|.+. .....+.+++..+.+++||+||++++...+..+++.+|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            46799999999999999999999999988777777654 44567788998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++.++++..+. +|+++||+
T Consensus       104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  171 (201)
T 2ew1_A          104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK  171 (201)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 88988888765 5899999999999976543          778888899998887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|+++++.+.+.
T Consensus       172 ~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.4e-33  Score=202.72  Aligned_cols=165  Identities=31%  Similarity=0.553  Sum_probs=144.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      +.+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35679999999999999999999999988877777765444 55677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1r2q_A           83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 78888877664 6899999999999976543          677888899988887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|++|.+.+.+
T Consensus       151 ~~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          151 KTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCTTHHHHHHHHHHTSCC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999987643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.4e-33  Score=202.57  Aligned_cols=165  Identities=36%  Similarity=0.551  Sum_probs=145.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .++.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35689999999999999999999999998888777765 44456777888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ++|||++++.+++.+ ..|+..+....++.|+++|+||+|+...+.          +..+++.++++..+. +++++||+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence            999999999999998 778888876667899999999999976543          678888999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      ++.|++++|++|.+.+.+
T Consensus       150 ~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=207.21  Aligned_cols=168  Identities=30%  Similarity=0.599  Sum_probs=148.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+|+|++|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            4568999999999999999999999998887777765 444567788998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +...++.++++..+. +++++||+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  161 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  161 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence            99999999999998 78988887775 5899999999999987654          788889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchh
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~  183 (211)
                      +|.|++++|++|.+.+.+....
T Consensus       162 ~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999765443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.6e-33  Score=203.65  Aligned_cols=167  Identities=33%  Similarity=0.557  Sum_probs=144.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      +.+.+||+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            34679999999999999999999999998877777765443 55677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  156 (181)
T 2efe_B           89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSA  156 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCS
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999999998 78888887765 6899999999999976554          778889999999887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCc
Q 028239          161 KTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++|.|++++|++|.+.+...+
T Consensus       157 ~~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          157 KTATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SSCTTHHHHHHHHHHTCC---
T ss_pred             CCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999886543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.2e-33  Score=207.65  Aligned_cols=165  Identities=31%  Similarity=0.601  Sum_probs=142.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ..+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999998777777765443 45677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||
T Consensus        98 i~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  165 (191)
T 2a5j_A           98 LLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSA  165 (191)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887764 6899999999999976543          778889999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++.|++++|++|++.+.+
T Consensus       166 ~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          166 KTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2e-33  Score=203.66  Aligned_cols=165  Identities=33%  Similarity=0.608  Sum_probs=146.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .++.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            45679999999999999999999999998888777776444 55677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  159 (179)
T 1z0f_A           92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA  159 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 88888887766 6899999999999976543          778888999999887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|+++++.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=204.54  Aligned_cols=164  Identities=26%  Similarity=0.380  Sum_probs=131.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC--ccccccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED--YSRLRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~--~~~~~~~~~~~~d~~   81 (211)
                      .+.+||+++|++|+|||||+++|.+..+...+..+..+.+...+.+++..+.+.+||+||++.  +...+..+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            357999999999999999999999988766555444455566778899889999999999987  555667788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      ++|||++++.++..+ ..|...+....  ++.|+++|+||+|+...+.          +..+++..++...+. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999998 78888777653  5899999999999987554          777888889988887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|.|++++|++|.+.+..
T Consensus       150 a~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=211.77  Aligned_cols=166  Identities=31%  Similarity=0.535  Sum_probs=140.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .++.+||+|+|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35679999999999999999999999998877777765444 56777888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+..+++++||
T Consensus       106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA  174 (201)
T 2hup_A          106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSA  174 (201)
T ss_dssp             EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeC
Confidence            999999999999998 78988888765 6899999999999977543          77888999999988768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|++|++.+.+
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          175 KDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.9e-33  Score=204.48  Aligned_cols=165  Identities=31%  Similarity=0.624  Sum_probs=146.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .+..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34679999999999999999999999998877777775444 45667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..++++++++..+. +++++||
T Consensus        99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  166 (189)
T 2gf9_A           99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA  166 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence            999999999999998 78988888765 6899999999999976543          677888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|++|.+.+.+
T Consensus       167 ~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          167 KENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.2e-34  Score=206.80  Aligned_cols=168  Identities=27%  Similarity=0.440  Sum_probs=144.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDG-SIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +.+.+||+++|++|+|||||+++|.++.+...+.+|.+ +.....+.+++ ..+.+++||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            46789999999999999999999999888766666664 44556677776 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC---CCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA---PNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      +++|||++++.+++.+ ..|+..+....   .+.| +++|+||+|+.+.+.          +..+++.++++..+. +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence            9999999999999998 78888887643   2455 899999999976543          778888999999987 999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCch
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ++||++|.|++++|++|.+.+.+...
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999977643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=208.37  Aligned_cols=166  Identities=31%  Similarity=0.525  Sum_probs=145.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      |.+.+.+||+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            456678999999999999999999999999988888888887877788899999999999999988 6777888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      +++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+...+.          +..+++.++++..+. +++++
T Consensus       102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  169 (196)
T 2atv_A          102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC  169 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999998 77887777643  5899999999999977543          788889999999987 99999


Q ss_pred             cCCCCC-CHHHHHHHHHHHHcC
Q 028239          159 SSKTQQ-NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       159 sa~~~~-~v~~lf~~l~~~~~~  179 (211)
                      ||++|. |++++|++|++.+.+
T Consensus       170 Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          170 SACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             CTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCcCHHHHHHHHHHHHHh
Confidence            999999 999999999998854

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7e-33  Score=201.18  Aligned_cols=167  Identities=34%  Similarity=0.623  Sum_probs=137.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      .++.+||+++|++|+|||||+++|.+..+. ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999998874 45556665444 4456788888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++.++++..+. +++++|
T Consensus        87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  154 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS  154 (180)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999998 88888888766 5899999999999987553          778888899999987 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCc
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      |+++.|++++|+++.+.+.+..
T Consensus       155 a~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          155 AKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.5e-33  Score=202.24  Aligned_cols=161  Identities=24%  Similarity=0.378  Sum_probs=121.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||+++|.+..+. ...++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            589999999999999999999876654 2334455556677788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++++++.+ ..|+..+....  ++.|+++|+||+|+...+.          +..+++..++...+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T 3q72_A           81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  148 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence            99999999998 77877776653  6899999999999987654          788889999999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .|++++|+++.+.+..
T Consensus       149 ~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          149 HNVQALFEGVVRQIRL  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.3e-33  Score=206.15  Aligned_cols=165  Identities=30%  Similarity=0.525  Sum_probs=145.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+|+|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999988877777654 44566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +...++.++++..+. +++++||+
T Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  155 (186)
T 2bme_A           88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  155 (186)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999998 78888877664 6899999999999976543          777888899999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|+++.+.+.++
T Consensus       156 ~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.8e-33  Score=199.62  Aligned_cols=165  Identities=25%  Similarity=0.537  Sum_probs=146.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ..+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998887777776544 45677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++..+++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z0j_A           83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 88988888764 7899999999999986543          778888999999887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|+++.+.+.+
T Consensus       151 ~~~~~i~~l~~~i~~~i~~  169 (170)
T 1z0j_A          151 KNAININELFIEISRRIPS  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHCCC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1e-33  Score=206.61  Aligned_cols=163  Identities=32%  Similarity=0.567  Sum_probs=147.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+|+|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   96 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence            56899999999999999999999999988888888888877888899889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||++++.++..+ ..|+..+....  .+.|+++|+||+|+...+.          +..+++.++++..+. +++++||++
T Consensus        97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  164 (187)
T 2a9k_A           97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKT  164 (187)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 78888777665  3899999999999977543          778888999999987 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      +.|++++|++|.+.+.+
T Consensus       165 ~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          165 RANVDKVFFDLMREIRA  181 (187)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998853

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.5e-33  Score=201.90  Aligned_cols=162  Identities=29%  Similarity=0.582  Sum_probs=145.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888777778888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||++++.+++.+ ..|...+....  ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999998 77777776654  5899999999999976543          778888899999887 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 028239          163 QQNVKAVFDTAIKVVL  178 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~  178 (211)
                      |.|++++|+++.+.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-33  Score=200.26  Aligned_cols=166  Identities=31%  Similarity=0.565  Sum_probs=144.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999998877777765444 5667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....       .+.+..+++.++++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78888887765 6899999999999976421       123778888899999887 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      |.|++++|+++.+.+.+
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CTTHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999887643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.5e-34  Score=209.99  Aligned_cols=165  Identities=31%  Similarity=0.545  Sum_probs=136.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .++.+||+|+|++|+|||||+++|+++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            356799999999999999999999999887777777653 3456677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +...++.++++..+. +++++||
T Consensus       102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA  169 (200)
T 2o52_A          102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA  169 (200)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887655 6899999999999976543          777888899999887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|++|++.+..
T Consensus       170 ~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999865

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3.5e-33  Score=200.83  Aligned_cols=163  Identities=25%  Similarity=0.392  Sum_probs=130.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCCcCccc-cccccccCCcEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQEDYSR-LRPLSYRGADIFVL   83 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~   83 (211)
                      .+||+++|++|+|||||+++|.+..+...+.++. .+.+...+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999999876554443333 455667778899999999999999998876 77778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCC--CCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAP--NVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||+++++++..+ ..|+..+....+  +.|+++|+||+|+.+.+.          +..+++.++++..+. +|+++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence            9999999999999 788888877653  899999999999986554          888999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|+++++.+..+
T Consensus       150 ~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          150 LHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhc
Confidence            9999999999999987543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=204.33  Aligned_cols=165  Identities=32%  Similarity=0.530  Sum_probs=145.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      .++.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999998877777765444 45677788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++..+++..+. +++++||
T Consensus       102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  169 (193)
T 2oil_A          102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA  169 (193)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887654 6899999999999976543          677888899998887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|++|.+.+.+
T Consensus       170 ~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=8.3e-33  Score=200.27  Aligned_cols=166  Identities=36%  Similarity=0.662  Sum_probs=140.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ..+.++|+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45689999999999999999999999998877777775444 56778889889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      ++|||++++.++..+ ..|+..+....     ++.|+++|+||+|+....           +..+++.++++.....+++
T Consensus        84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~  151 (177)
T 1wms_A           84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYF  151 (177)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEE
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-----------cCHHHHHHHHHhcCCceEE
Confidence            999999999999998 78888776543     578999999999997322           6778888888855555999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++||++|.|++++|+++++.+.+.
T Consensus       152 ~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          152 ETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-33  Score=201.74  Aligned_cols=163  Identities=29%  Similarity=0.525  Sum_probs=143.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            56999999999999999999999999888888887777777778888889999999999999999888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ||++++.+++.+ ..|+..+....   ++.|+++|+||+|+...+.          +...++..+++..+. +++++||+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  149 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  149 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence            999999999988 77777666543   5899999999999976554          677788888888887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.|++++|++|.+.+..
T Consensus       150 ~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          150 LNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             TTBSHHHHHHHHHHTCCS
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999987654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-33  Score=208.16  Aligned_cols=164  Identities=25%  Similarity=0.423  Sum_probs=136.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-ccccccccccCCc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLRPLSYRGAD   79 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d   79 (211)
                      ....+||+|+|.+|+|||||+++|.+..  +...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+|
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            3466999999999999999999999643  455555554555667788899999999999999876 4556677889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      ++++|||+++..+|+.+ ..|...+....  +++|+++|+||+|+...+.          +..++++.++...+. +|++
T Consensus       114 ~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e  181 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  181 (211)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             EEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEE
Confidence            99999999999999998 78887776532  5899999999999976543          777888888888887 9999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHc
Q 028239          158 CSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +||++|.||+++|+++++.+.
T Consensus       182 ~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          182 TSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=206.86  Aligned_cols=172  Identities=32%  Similarity=0.499  Sum_probs=136.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      ...+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            345679999999999999999999999998777777766444 4667788988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....    ....+.+..+++..+++..+. +|+++|
T Consensus       104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~S  177 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETS  177 (199)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEee
Confidence            9999999999999998 78988887765 5899999999999963210    001224778888999999987 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|.|++++|++|++.+.+
T Consensus       178 A~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          178 AKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-33  Score=204.58  Aligned_cols=165  Identities=27%  Similarity=0.539  Sum_probs=144.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            4679999999999999999999999998777777776544 455667778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||+
T Consensus       101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  168 (192)
T 2fg5_A          101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK  168 (192)
T ss_dssp             EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 88988888765 5899999999999976443          778889999999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++.|++++|++|.+.+.+.
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC--
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999987543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.2e-32  Score=201.85  Aligned_cols=163  Identities=36%  Similarity=0.572  Sum_probs=136.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.++|+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   99 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence            56899999999999999999999999888888888877777888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||+++..++.++ ..|+..+....  .+.|+++|+||+|+....           +..+++.++++..+. +++++||++
T Consensus       100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  166 (190)
T 3con_A          100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAKT  166 (190)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            999999999998 88888877654  489999999999997632           677888999999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      +.|++++|++|.+.+.+.
T Consensus       167 ~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          167 RQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=4.6e-33  Score=200.16  Aligned_cols=163  Identities=33%  Similarity=0.661  Sum_probs=138.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999998777777765444 4566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+....           +..+++.++++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKN  148 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999998 88888887765 689999999999994322           677888899999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.|++++|+++.+.+.++
T Consensus       149 ~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=8.5e-33  Score=205.22  Aligned_cols=169  Identities=31%  Similarity=0.555  Sum_probs=143.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            35679999999999999999999999998888777764 44456677788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      |+|||++++.++..+ ..|+..+....     ++.|+++|+||+|+....           +..+++..++......+++
T Consensus        85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~  152 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYF  152 (207)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCCceEE
Confidence            999999999999998 78887776543     478999999999997432           6677888888844445999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCchh
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~~~  183 (211)
                      ++||++|.|++++|++|.+.+.+....
T Consensus       153 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~  179 (207)
T 1vg8_A          153 ETSAKEAINVEQAFQTIARNALKQETE  179 (207)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999765543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=206.55  Aligned_cols=166  Identities=25%  Similarity=0.401  Sum_probs=139.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-cccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-LRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~   81 (211)
                      ...+||+|+|++|+|||||+++|.+......+.+ +..+.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            4679999999999999999999976443222222 33455566778899999999999999988765 777788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      ++|||++++.+|..+ ..|+..+....  ++.|+++|+||+|+...+.          ++.++++++++..+. +|+++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999998 78888887655  4899999999999976554          788889999999887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCc
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      |++|.|++++|+++++.+....
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999986543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=5.1e-33  Score=204.04  Aligned_cols=164  Identities=34%  Similarity=0.578  Sum_probs=143.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee--EEEEECCe---------EEEEEEEeCCCCcCcccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVAVDGS---------IVNLGLWDTAGQEDYSRLRP   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~l~D~~G~~~~~~~~~   72 (211)
                      ++.+||+|+|++|+|||||+++|.++.+...+.++.+..+.  ..+.+++.         .+.+.+||+||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            45799999999999999999999999988877777765543  45555654         78899999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI  150 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (211)
                      .+++.+|++++|||++++.++..+ ..|+..+....  ++.|+++|+||+|+...+.          +..+++.++++..
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~  157 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY  157 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence            999999999999999999999998 78888887765  5899999999999976543          7778889999999


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +. +++++||+++.|++++|++|.+.+.+
T Consensus       158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          158 GI-PYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            87 99999999999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=206.34  Aligned_cols=166  Identities=31%  Similarity=0.555  Sum_probs=138.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ....+||+|+|.+|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34678999999999999999999999988777777764 44456677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..++++++++.+...+++++||
T Consensus       103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA  171 (192)
T 2il1_A          103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASA  171 (192)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeC
Confidence            999999999999998 88988888766 5899999999999976554          77888888988864459999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.|++++|++|.+.+.+
T Consensus       172 ~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          172 KDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=6.1e-34  Score=211.35  Aligned_cols=171  Identities=26%  Similarity=0.364  Sum_probs=112.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEECCe--EEEEEEEeCCCCcCcccccccccc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVF-DNFSANVAVDGS--IVNLGLWDTAGQEDYSRLRPLSYR   76 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~   76 (211)
                      .....++|+|+|++|+|||||+++|.+.  .+...+.+|.+ +.....+.+++.  .+.+.+||+||++.+...+..+++
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3456789999999999999999999998  78778888876 555667778876  889999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC----CCcEEEEeeCCCccc-CccccccccCCccccHHHHHHHHHHhC
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRE-DRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      .+|++++|||++++.++..+ ..|+..+....+    +.|+++|+||+|+.. .+.          +..+++.++++.++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~  164 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT  164 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred             hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence            99999999999999999998 789988887654    899999999999977 443          77889999999999


Q ss_pred             CceEEEecCCC-CCCHHHHHHHHHHHHcCCchhh
Q 028239          152 AAAYIECSSKT-QQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       152 ~~~~~~~sa~~-~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      . +++++||++ +.|++++|++|.+.+.+...+.
T Consensus       165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          165 L-DFFDVSANPPGKDADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             C-EEEECCC-------CHHHHHHHHHHHHHHHHH
T ss_pred             C-EEEEeccCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence            7 999999999 9999999999999987644433

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=5.7e-33  Score=201.26  Aligned_cols=164  Identities=31%  Similarity=0.539  Sum_probs=143.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+.+||+|+|++|+|||||+++|++..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            3569999999999999999999999988877777765 445667788898899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||+
T Consensus        92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (179)
T 2y8e_A           92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK  159 (179)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999998 78887776654 5899999999999976554          778888889999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.|++++|++|.+.+.+
T Consensus       160 ~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          160 AGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TTBSHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=203.25  Aligned_cols=165  Identities=28%  Similarity=0.615  Sum_probs=146.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4679999999999999999999999998877777775444 456777888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++.++. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
T 1zbd_A           86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK  153 (203)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence            99999999999998 78988887765 6899999999999977554          778889999999997 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|++|.+.+.+.
T Consensus       154 ~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          154 DNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             TTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=201.68  Aligned_cols=165  Identities=28%  Similarity=0.613  Sum_probs=145.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            568999999999999999999999998888777775444 5667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+ ..|+..+....  ++.|+++|+||+|+....           +..+++.++++..+. +++++||+
T Consensus        94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (195)
T 1x3s_A           94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  160 (195)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            9999999999998 78988887754  589999999999995432           677888899999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ++.|++++|++|.+.+.+...
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999987543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=4.5e-33  Score=202.32  Aligned_cols=167  Identities=32%  Similarity=0.597  Sum_probs=128.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEEC-CeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVD-GSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +.+.++|+++|++|+|||||+++|++..+...+.++.+. .....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            456899999999999999999999999988777777643 344555665 566889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      +++|||++++.+++.+ ..|+..+....     ++.|+++|+||+|+.....         .+..+++.++++.....++
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~  154 (182)
T 1ky3_A           85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPL  154 (182)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCE
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeE
Confidence            9999999999999998 78887776543     5899999999999964322         2677888888885555599


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++|.|++++|++|.+.+.+
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          155 FLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.5e-32  Score=201.86  Aligned_cols=165  Identities=26%  Similarity=0.486  Sum_probs=141.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeE--------------------------
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSI--------------------------   53 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~--------------------------   53 (211)
                      |.+.+.+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            7788899999999999999999999999998888777775443 4455555544                          


Q ss_pred             -----------EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           54 -----------VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        54 -----------~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                                 +.+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+.... +.|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISS-NYIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHS-CCEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhC-CCcEEEEEECCC-
Confidence                       8899999999999999999999999999999999999999998 78888887655 499999999999 


Q ss_pred             ccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ...+.          +..+++.++++..+. +++++||++|.|++++|++|.+.+.+
T Consensus       159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33322          678889999999987 99999999999999999999988753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=2.3e-32  Score=195.41  Aligned_cols=161  Identities=35%  Similarity=0.585  Sum_probs=144.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence            58999999999999999999999998888888887777778888998999999999999999999998999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++.++..+ ..|+..+....  .+.|+++|+||+|+....           +..+++.++++..+. +++++||++|
T Consensus        83 d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T 2ce2_X           83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKTR  149 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCCC
Confidence            99999999998 88888877664  389999999999987632           677888899999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .|++++|+++.+.+.+
T Consensus       150 ~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          150 QGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.5e-32  Score=201.33  Aligned_cols=164  Identities=28%  Similarity=0.528  Sum_probs=140.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCcc-ccccccccCCcE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYS-RLRPLSYRGADI   80 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~   80 (211)
                      ..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.. ....+.+++..+.+.+||+||++.+. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3467999999999999999999999999888777776543 45667788888999999999999988 788889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      +++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+...+.          +..++++++++..+. +++++
T Consensus        97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  164 (189)
T 1z06_A           97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFET  164 (189)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 78888887764  6899999999999976543          778888999999887 99999


Q ss_pred             cCCCC---CCHHHHHHHHHHHHc
Q 028239          159 SSKTQ---QNVKAVFDTAIKVVL  178 (211)
Q Consensus       159 sa~~~---~~v~~lf~~l~~~~~  178 (211)
                      ||+++   .|++++|++|++.+.
T Consensus       165 Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          165 SAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CSSSGGGGSCHHHHHHHHC----
T ss_pred             eCCcCCcccCHHHHHHHHHHHHh
Confidence            99999   999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=207.87  Aligned_cols=164  Identities=30%  Similarity=0.611  Sum_probs=145.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4678999999999999999999999988777777765333 456667777788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++..+++..+. +++++||+
T Consensus       101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  168 (191)
T 3dz8_A          101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK  168 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 78999988866 6899999999999977654          788889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.|++++|+++++.+.+
T Consensus       169 ~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          169 ENISVRQAFERLVDAICD  186 (191)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=6e-32  Score=198.86  Aligned_cols=164  Identities=25%  Similarity=0.422  Sum_probs=133.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-ccccccccccCCcE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-YSRLRPLSYRGADI   80 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~   80 (211)
                      ...+||+++|.+|+|||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||++|.+. +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            45699999999999999999999963  3555555555555667788899999999999999876 55567778889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      +++|||+++.++|+.+ ..|...+....  ++.|+++|+||+|+...+.          +..+++..++...+. +|+++
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~  151 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET  151 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence            9999999999999998 78877776643  5899999999999976443          677788888888886 99999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcC
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ||++|.||+++|+++++.+..
T Consensus       152 SA~~g~~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          152 SAAVQHNVKELFEGIVRQVRL  172 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHh
Confidence            999999999999999998854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.7e-33  Score=208.87  Aligned_cols=165  Identities=39%  Similarity=0.626  Sum_probs=142.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCe----------EEEEEEEeCCCCcCccccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGS----------IVNLGLWDTAGQEDYSRLR   71 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~l~D~~G~~~~~~~~   71 (211)
                      .++.+||+|+|++|+|||||+++|++..+...+.+|.+..+ ...+.+++.          .+.+.|||+||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            45679999999999999999999999988777766665444 345566655          7889999999999999999


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      ..+++.+|++|+|||++++.++..+ ..|+..+....  .+.|+++|+||+|+...+.          +..+++.++++.
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~  170 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK  170 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence            9999999999999999999999998 78887776554  5899999999999976543          778889999999


Q ss_pred             hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          150 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       150 ~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .+. +++++||+++.|++++|++|.+.+.+
T Consensus       171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          171 YGI-PYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            987 99999999999999999999999865

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2e-31  Score=198.69  Aligned_cols=163  Identities=33%  Similarity=0.640  Sum_probs=141.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            456899999999999999999999998877777776543 4566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+... .          +..+++.++++..+. +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------VTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSC-C----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc-c----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887765 47999999999999432 2          677888889999887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      ++.|++++|++|.+.+.+
T Consensus       165 ~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=1.2e-32  Score=202.64  Aligned_cols=165  Identities=25%  Similarity=0.297  Sum_probs=133.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------Cceeeee-eEEE-EECCeEEEEEEEeCCCCcCcc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----------PTVFDNF-SANV-AVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----------~t~~~~~-~~~~-~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      .+++.+||+++|++|+|||||++.+.+ .+...+.           +|.+..+ ...+ .+++..+.+++||+||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            345789999999999999999965554 4444432           3333222 2223 456778899999999999999


Q ss_pred             ccccccccCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239           69 RLRPLSYRGADIFVLAFSLI------SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ  142 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (211)
                      ..+..+++++|++|+|||++      +.+++..+ ..|+..+....++.|+++|+||+|+...            +..++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~  155 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM  155 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence            99999999999999999999      55677777 6777777544579999999999999764            67788


Q ss_pred             HHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          143 GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       143 ~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      +.++++..+..+++++||++|.|++++|++|.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            89999888876899999999999999999999988653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.98  E-value=4.6e-31  Score=209.16  Aligned_cols=176  Identities=61%  Similarity=1.040  Sum_probs=153.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ..++|+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            46899999999999999999999999988999998888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++.++++..+..+|+++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            999999999998448988888877899999999999996542110  111122347888999999999876899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.|++++|+.+.+.++.+
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=5.7e-32  Score=202.50  Aligned_cols=170  Identities=28%  Similarity=0.430  Sum_probs=141.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE-CCeEEEEEEEeCCCCcCccccccccccCCcE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADI   80 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   80 (211)
                      +...+||+|+|.+|+|||||+++|+++.+...+.++.+..... .+.. ++..+.+.+||+||++.+...+..+++.+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4567999999999999999999999988877766776544433 3333 3455889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           81 FVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      +++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++..++...+. +++++|
T Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  155 (218)
T 4djt_A           88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEIS  155 (218)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEB
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence            9999999999999998 78988887765 4699999999999987544          778888888888887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      |++|.|++++|++|.+.+.......
T Consensus       156 a~~g~gv~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          156 AKTAHNFGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             TTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHhcccccc
Confidence            9999999999999999998765443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.7e-33  Score=207.05  Aligned_cols=165  Identities=31%  Similarity=0.618  Sum_probs=134.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+|+|.+|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            4679999999999999999999999888777666654 344567778898899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++.++++.++. +++++||+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~  178 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  178 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999999 88988887765 5899999999999976553          555667788888887 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|++|.+.+.+.
T Consensus       179 ~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             --HHHHHHHHHHTTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999998877553

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=7.3e-32  Score=202.43  Aligned_cols=166  Identities=28%  Similarity=0.491  Sum_probs=142.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ....+||+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            34679999999999999999999887777666666664 44455677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+...           . .+...+++..+. +|+++||+
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~  157 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------K-AKSIVFHRKKNL-QYYDISAK  157 (221)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------C-GGGCCHHHHHTC-EEEECBGG
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------c-HHHHHHHHHcCC-EEEEEeCC
Confidence            999999999999999 889999988888999999999999976432           1 244556777787 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +|.|++++|++|.+.+.....
T Consensus       158 ~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          158 SNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             GTBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999977643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.6e-34  Score=212.49  Aligned_cols=174  Identities=62%  Similarity=1.046  Sum_probs=147.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+++||+||++++...+..+++.+|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            57899999999999999999999999988888888887777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.......  ......+.+..+++.++++..+..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            9999999999998448888888766789999999999997643211  01111124667778888888886689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028239          162 TQQNVKAVFDTAIKVV  177 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~  177 (211)
                      +|.|++++|+++++.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=3.8e-31  Score=195.04  Aligned_cols=167  Identities=13%  Similarity=0.143  Sum_probs=125.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ....+||+|+|.+|+|||||+++|++..+.. .+.+|.+... ..+...+  +.+.+||+||++.+...+..+++.+|++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            4567899999999999999999999999877 6777776333 2333344  7788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC---------CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-HHhC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA---------PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-KQIG  151 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  151 (211)
                      |+|||++++++|..+ ..|+..+....         +++|+++|+||+|+.....       ...+......... +..+
T Consensus        91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred             EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence            999999999999998 66666654431         2899999999999976531       0001111111111 3344


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                       .+++++||++|.||+++|++|.+.+.+..
T Consensus       163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          163 -FVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             -EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             -eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence             48999999999999999999999886543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.1e-30  Score=193.08  Aligned_cols=157  Identities=20%  Similarity=0.257  Sum_probs=121.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||+++|.++.+. .+.+|.+.. ...+.+++  +.+.+|||||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999988764 345555443 35666777  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-----------  150 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (211)
                      |||+++++++..+ ..|+..+...  .++.|+++|+||+|+...            ++.+++.+++...           
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence            9999999999998 6777766543  258999999999999752            5666666665532           


Q ss_pred             -----CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          151 -----GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       151 -----~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                           ...+++++||++|.|++++|++|.+.+
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                 234899999999999999999998643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=2.9e-30  Score=189.55  Aligned_cols=156  Identities=17%  Similarity=0.261  Sum_probs=124.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999998875 344555443 45666777  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-----------  150 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (211)
                      |||+++++++..+ ..|+..+...  .++.|+++|+||+|+...            ++.++..+.....           
T Consensus        97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T 1m2o_B           97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ  163 (190)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred             EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence            9999999999998 6777666543  268999999999999762            4555555544321           


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          151 GAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      ...+|+++||++|.|++++|+++.+.
T Consensus       164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          164 RPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            23489999999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3e-30  Score=188.75  Aligned_cols=163  Identities=15%  Similarity=0.224  Sum_probs=124.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||+++|.++.+. .+.+|.+ .....+.+++  +.+.+||+||++++...+..+++.+|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            56799999999999999999999988876 4455544 2234555666  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-----HhCCceEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-----QIGAAAYI  156 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (211)
                      |||+++++++..+ ..|+..+...  ..+.|+++|+||+|+...            ...++..+...     ..+ .+++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~  155 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ  155 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSC-EEEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCC-cEEE
Confidence            9999999999998 6777766654  268999999999999753            23344433332     223 3899


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      ++||++|.|++++|++|++.+.......
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred             EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999987655443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=5.8e-30  Score=186.93  Aligned_cols=159  Identities=16%  Similarity=0.214  Sum_probs=126.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||++++.++. ...+.+|.+.. ...+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            567999999999999999999999888 56666666533 34455565  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-----HhCCceEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-----QIGAAAYI  156 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (211)
                      |||++++.++..+ ..|+..+...  .++.|+++|+||+|+....            ..++..+...     ..+ .+++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHH-WRIQ  157 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence            9999999999998 6666665543  2689999999999997642            2223222221     223 3899


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++||++|.|++++|+++.+.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=188.37  Aligned_cols=160  Identities=17%  Similarity=0.246  Sum_probs=126.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+.+||+|+|.+|+|||||+++|.+.. +...+.+|.+ .....+.+++  +.+.+||+||++.+...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            467999999999999999999999887 5666666655 3344555665  67789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH--Hh--CCce
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK--QI--GAAA  154 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~  154 (211)
                      +|||++++.++..+ ..|+..+....    .+.|+++|+||+|+...            ...++..++..  .+  ...+
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPWH  162 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCceE
Confidence            99999999999998 66666665432    48999999999999754            34455555443  21  1248


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++++||++|.|++++|++|.+.+.+
T Consensus       163 ~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          163 ICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999987743

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=4.6e-30  Score=184.71  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=124.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||+++|.++.+.. +.+|.+. ....+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            456999999999999999999999988754 4445432 234455565  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+ ..|+..+....  ++.|+++|+||+|+.....       ...+........++..+. +++++||+
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  151 (171)
T 1upt_A           81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT  151 (171)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence            9999999999988 55655554332  6899999999999976521       000111111112222343 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.|++++|+++.+.+.++
T Consensus       152 ~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          152 KGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhc
Confidence            9999999999999988653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.9e-31  Score=189.15  Aligned_cols=155  Identities=15%  Similarity=0.200  Sum_probs=118.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||+++|.++.+.. +.+|.+ .....+..++  +.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999888764 345544 2223344444  678899999999999998889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-H----HHHhCCceEEEec
Q 028239           87 LISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-L----RKQIGAAAYIECS  159 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~s  159 (211)
                      +++++++..+ ..|+..+...  .++.|+++|+||+|+....            ...+... +    ++..+ .+++++|
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~S  142 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRN-WYIQATC  142 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEEEECB
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCcc-EEEEEcc
Confidence            9999999998 6676666543  2689999999999997642            1122111 1    11122 3799999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|.|++++|+++.+.+.+
T Consensus       143 a~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             cCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=5.4e-31  Score=193.74  Aligned_cols=159  Identities=14%  Similarity=0.177  Sum_probs=117.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+.+||+++|++|+|||||+++|.++.+.. +.+|.+ .....+..++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4568999999999999999999999887753 333433 2233445555  77889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-H----HHHhCCceE
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-L----RKQIGAAAY  155 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  155 (211)
                      +|||+++++++..+ ..|+..+....  ++.|+++|+||+|+....            ...+..+ +    +...+ .++
T Consensus       102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~  167 (192)
T 2b6h_A          102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRT-WYV  167 (192)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCc-eEE
Confidence            99999999999998 67766665432  589999999999996642            1122111 1    11122 379


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++||++|.|++++|++|++.+.+
T Consensus       168 ~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          168 QATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             EECcCCCcCCHHHHHHHHHHHHhc
Confidence            999999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=4.8e-30  Score=187.91  Aligned_cols=159  Identities=22%  Similarity=0.281  Sum_probs=125.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+|+|++|+|||||+++|.++.+...+.+|.+..+. .+...+  +.+.+||+||++.+...+..+++.+|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            46799999999999999999999999988777777765543 234444  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----HHhCCceEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----KQIGAAAYI  156 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (211)
                      |||+++++++..+ ..|+..+...  ..+.|+++|+||+|+....            ...+..+..     ...+ .+++
T Consensus        97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  162 (188)
T 1zd9_A           97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDRE-ICCY  162 (188)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCC-eeEE
Confidence            9999999999998 6666655443  2689999999999997642            222211111     1122 3799


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++||++|.|++++|++|.+.+.+
T Consensus       163 ~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          163 SISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1.4e-30  Score=192.12  Aligned_cols=170  Identities=14%  Similarity=0.203  Sum_probs=123.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCCcCccccc---cccccCC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQEDYSRLR---PLSYRGA   78 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~---~~~~~~~   78 (211)
                      +.+.+||+++|.+|+|||||++++.+........+...........+ ++..+.+++||+||++.|....   ..+++++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   96 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT   96 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence            45679999999999999999998877543321111111111222233 3566889999999999988765   7899999


Q ss_pred             cEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH----HhCC
Q 028239           79 DIFVLAFSLISR--ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK----QIGA  152 (211)
Q Consensus        79 d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  152 (211)
                      |++|+|||+++.  +++..+ ..|+..+....++.|+++|+||+|+......   ....+.+...++.++++    ..+.
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHK---IETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHH---HHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             CEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhh---hHHHhHHHHHHHHHHHHhhhhcCCc
Confidence            999999999997  666666 6677766555679999999999998653210   00012366677778888    5565


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                       +|+++||++ .||+++|+.+++.++
T Consensus       173 -~~~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          173 -SFYLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             -EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred             -ceEEEEech-hhHHHHHHHHHHHhC
Confidence             999999999 999999999998763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=4.6e-30  Score=186.87  Aligned_cols=156  Identities=17%  Similarity=0.266  Sum_probs=121.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+.+||+++|.+|+|||||+++|.++.+ ..+.+|.+.. ...+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            34679999999999999999999999887 4444444432 34555666  77889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH-----HhCCceE
Q 028239           83 LAFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK-----QIGAAAY  155 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  155 (211)
                      +|||+++++++..+ ..|+..+...  ..+.|+++|+||+|+...            ...++..+...     ..+ .++
T Consensus        94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~  159 (181)
T 2h17_A           94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHI  159 (181)
T ss_dssp             EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSC-EEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCc-eEE
Confidence            99999999999998 6666655543  268999999999999764            22333333221     122 389


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++||++|.|++++|++|.+.
T Consensus       160 ~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          160 QACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EECBTTTTBTHHHHHHHHHTC
T ss_pred             EEccCCCCcCHHHHHHHHHhh
Confidence            999999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=3e-30  Score=189.00  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=123.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|++|+|||||++++.++.+.. +.+|.+ .....+..++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            568999999999999999999999887654 344443 2233455555  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-----HHHHhCCceEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-----LRKQIGAAAYI  156 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  156 (211)
                      |||+++++++..+ ..|+..+....  ++.|+++|+||+|+....            ...+..+     .+...+. +++
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  161 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIV  161 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence            9999999999998 56655554432  589999999999997642            1122111     1122233 799


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             EccCCCccCHHHHHHHHHHHHHhc
Confidence            999999999999999999988543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=3.3e-29  Score=185.10  Aligned_cols=164  Identities=34%  Similarity=0.577  Sum_probs=140.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..++|+++|++|+|||||+++|.+..+...+.++.+. .....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999887777777643 34567888999999999999999999988888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||+++..++..+ ..|+..+.... .+.|+++|+||+|+...+.          +...+++.++...+. .++++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal  150 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  150 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999988 77877776554 5789999999999976543          667788899998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      ++.|++++|+++.+.+.+
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=6.5e-31  Score=191.97  Aligned_cols=167  Identities=22%  Similarity=0.320  Sum_probs=122.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeee-eEEEEE---CCeEEEEEEEeCCCCcCccccccccccCCc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVAV---DGSIVNLGLWDTAGQEDYSRLRPLSYRGAD   79 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d   79 (211)
                      .+||+++|++|+|||||+++|.+.  .+...+.+|.+..+ ...+.+   ++..+.+.+||++|++.|...++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  46666666765443 223222   345678899999999999999998999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc---HHHHHHHHHHhCCc--
Q 028239           80 IFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT---TAQGEELRKQIGAA--  153 (211)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--  153 (211)
                      ++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+...+.          +.   ..++..+++..+..  
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence            99999999997 578888 889888877667899999999999976432          22   34455666666662  


Q ss_pred             -eEEEecCCCCC-CHHHHHHHHHHHHcCCchh
Q 028239          154 -AYIECSSKTQQ-NVKAVFDTAIKVVLQPPRR  183 (211)
Q Consensus       154 -~~~~~sa~~~~-~v~~lf~~l~~~~~~~~~~  183 (211)
                       +|+++||+++. +++++++.+.+.+.....+
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~  182 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINESLNFKIR  182 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred             hheEEEecccCchhHHHHHHHHHHHHhccccC
Confidence             29999999997 9999999999988776544

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=4e-30  Score=187.34  Aligned_cols=158  Identities=21%  Similarity=0.260  Sum_probs=120.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||+++|.+..+. .+.+|.+. ....+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            57899999999999999999999987642 33344332 233455665  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----HHhCCceEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----KQIGAAAYI  156 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (211)
                      |||+++++++..+ ..|+..+...  .++.|+++|+||+|+....            ..++..+..     ...+ .+++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  155 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRV-WQIQ  155 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCc-eEEE
Confidence            9999999999998 6666655433  2589999999999997643            122222211     1122 3799


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++||++|.|++++|+++.+.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=9.4e-30  Score=185.18  Aligned_cols=158  Identities=13%  Similarity=0.194  Sum_probs=120.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.++|+++|++|+|||||++++.++.+ ..+.+|.+. ....+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF-NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC-CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998776 344444442 234455565  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYIE  157 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  157 (211)
                      |||++++.+++.+ ..|+..+...  .++.|+++|+||+|+...            ...++..+.....    ...++++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~  158 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSWSIVA  158 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCceEEEE
Confidence            9999999999998 6776666654  268999999999999764            2233333322211    1137999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHc
Q 028239          158 CSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +||++|.|++++|+++.+.+.
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          159 SSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EBGGGTBTHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=6.2e-28  Score=177.24  Aligned_cols=162  Identities=35%  Similarity=0.612  Sum_probs=141.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..++|+++|++|||||||++++.+..++..+.+|.+..+ ...+.+++..+.+++||++|.+++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            3568999999999999999999999998877777775444 567888999999999999999999999998999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||+++..+++.+ ..|+..+.... .+.|+++++||+|+.+.+.          +...+++.++...+. .++++||+
T Consensus       107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal  174 (191)
T 1oix_A          107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL  174 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999887 77877776544 5789999999999976543          567888999999887 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028239          162 TQQNVKAVFDTAIKVV  177 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~  177 (211)
                      ++.+++++|+.+.+.+
T Consensus       175 d~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          175 DSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998876

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=2.6e-29  Score=187.53  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=117.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCCcCccc-cccccccCCc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGS-IVNLGLWDTAGQEDYSR-LRPLSYRGAD   79 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~-~~~~~~~~~d   79 (211)
                      .+.+.+||+++|++|+|||||+++|+++.+...+.++......  +.+++. .+.+++|||||++.+.. ++..+++.+|
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            3456899999999999999999999999988887765543333  555543 57888999999999987 7888899999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccCccccc------------cccCC--------
Q 028239           80 IFVLAFSLISRA-SYENVLKKWMPELRRF---APNVPIVLVGTKLDLREDRGYLA------------DHVGS--------  135 (211)
Q Consensus        80 ~~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~------------~~~~~--------  135 (211)
                      ++++|||+++.. ++......|...+...   .++.|+++|+||+|+........            .....        
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999864 4666646666666542   25799999999999976532000            00000        


Q ss_pred             ----ccccHHHHHHHHHHhC--CceEEEecCCCC------CCHHHHHHHHHHH
Q 028239          136 ----NVITTAQGEELRKQIG--AAAYIECSSKTQ------QNVKAVFDTAIKV  176 (211)
Q Consensus       136 ----~~~~~~~~~~~~~~~~--~~~~~~~sa~~~------~~v~~lf~~l~~~  176 (211)
                          +.+..+++..++.+..  .++|+++||++|      .||+++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                0000001111111111  358999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=8.7e-28  Score=173.91  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=118.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.. +.....+.+++.  .+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35678999999999999999999999887766555443 333456677775  456999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC--------Cc
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG--------AA  153 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  153 (211)
                      ++|||++++......  .++..+..  .+.|+++|+||+|+....             .++.....+..+        ..
T Consensus        83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT  145 (178)
T ss_dssp             EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred             EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence            999999884333322  12223333  379999999999997632             122222222222        14


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +++++||++|.|++++|++|++.+...+
T Consensus       146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          146 IFCKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             EEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence            8999999999999999999998875543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=7.8e-29  Score=189.90  Aligned_cols=163  Identities=20%  Similarity=0.273  Sum_probs=123.7

Q ss_pred             CCceeEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCCCce-eeee-eEE--------------EEECCeEE
Q 028239            3 ASKFIKCVTVGDG---------AVGKTCMLICYTS---NKFPTDYIPTV-FDNF-SAN--------------VAVDGSIV   54 (211)
Q Consensus         3 ~~~~~~I~viG~~---------~~GKSsli~~l~~---~~~~~~~~~t~-~~~~-~~~--------------~~~~~~~~   54 (211)
                      ..+.+||+|+|.+         |+|||||+++|.+   ..+...+.++. +..+ ...              ..+++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            3467999999999         9999999999999   55666666664 2221 111              12466778


Q ss_pred             EEEEEe-----------------------CCCCcCcccccccccc---------------------CCcEEEEEEECCCh
Q 028239           55 NLGLWD-----------------------TAGQEDYSRLRPLSYR---------------------GADIFVLAFSLISR   90 (211)
Q Consensus        55 ~l~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~   90 (211)
                      .++|||                       ++|+++|..++..+++                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            999999                       7788888888888887                     79999999999998


Q ss_pred             --hhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239           91 --ASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus        91 --~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                        .+++.+ ..|+..+...  .+++|+++|+||+|+...+.          +  +++.++++.....+|+++||++|.|+
T Consensus       176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~~~~e~SAk~g~gv  242 (255)
T 3c5h_A          176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNLQVVETSARSNVNV  242 (255)
T ss_dssp             ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred             chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCCeEEEEECCCCCCH
Confidence              999998 7888887765  26899999999999965432          3  56777777643349999999999999


Q ss_pred             HHHHHHHHHHHc
Q 028239          167 KAVFDTAIKVVL  178 (211)
Q Consensus       167 ~~lf~~l~~~~~  178 (211)
                      +++|++|++.+.
T Consensus       243 ~elf~~l~~~l~  254 (255)
T 3c5h_A          243 DLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998763

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=4.4e-28  Score=190.35  Aligned_cols=172  Identities=17%  Similarity=0.236  Sum_probs=131.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc-----ccccccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY-----SRLRPLSYR   76 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----~~~~~~~~~   76 (211)
                      ..+||+++|.+|+|||||+++++++.  +.. .+.+|.+..+ ..+.+++ .+.+.+||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~-~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH-SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE-EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE-EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            46899999999999999999999873  332 3333433333 3444444 478899999999988     778888899


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHh---hhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELR---RFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-  152 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (211)
                      ++|++++|||++++++++++ ..|...+.   ...+++|+++|+||+|+......    .....+..+++.++++.++. 
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999998 66655444   44578999999999999762210    00001455778899999873 


Q ss_pred             -ceEEEecCCCCCCHHHHHHHHHHHHcCCchhh
Q 028239          153 -AAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       153 -~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                       .+++++||++ .++.++|..+++.+......-
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~~~l  186 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNMSNH  186 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCSCHHHH
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcCCHHHH
Confidence             5999999999 899999999999887755433

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=2.7e-29  Score=196.23  Aligned_cols=169  Identities=14%  Similarity=0.156  Sum_probs=124.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---cccccccCCcEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---LRPLSYRGADIF   81 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~~   81 (211)
                      ||+++|..|+|||||++++.++.++.   .+.+|.+..+..   ++ ..+.+++|||||+++|..   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            69999999999999999988765433   244555544432   23 348899999999999975   357889999999


Q ss_pred             EEEEECCCh--hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH----hCCceE
Q 028239           82 VLAFSLISR--ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ----IGAAAY  155 (211)
Q Consensus        82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (211)
                      |+|||+++.  +++... ..|+..+....+++|++++|||+|+......   ....+.+..++++++++.    .+. +|
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~~~R~V~~~~~~~la~~~~~~~~i-~f  151 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VDAQRDIMQRTGEELLELGLDGVQV-SF  151 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HHHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hhHHHHhhHHHHHHHHhhcccccCc-eE
Confidence            999999997  233333 3345555555689999999999999764210   000123677777888875    455 99


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHcCCchhhHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVLQPPRRKEM  186 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~~~~~~~~~  186 (211)
                      ++|||++ .+|.++|..+++.++.+...-+.
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~le~  181 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPELSFLEN  181 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTTHHHHHH
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhhHHHHHH
Confidence            9999998 58999999999999875544443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=9.2e-29  Score=195.89  Aligned_cols=160  Identities=16%  Similarity=0.185  Sum_probs=116.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+|+|.+|+|||||+++|.++.+...+ +|.... ...+...+  +.++||||||++.+..++..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35689999999999999999999988875443 333222 22334444  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-H----HhCCceEEE
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-K----QIGAAAYIE  157 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  157 (211)
                      |||++++.++..+...|...+.... +++|++||+||+|+.....            ..+..... .    ..+ .+|++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~-~~~~~  305 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRN-WYIQA  305 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSC-EEEEE
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCC-CEEEE
Confidence            9999999999998444444444333 6899999999999976531            22221111 1    112 37999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcCC
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      +||++|.||+++|++|++.+.++
T Consensus       306 vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          306 TCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EECCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999988653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=9.4e-28  Score=172.19  Aligned_cols=152  Identities=15%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------cccccc--
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-VFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------RPLSYR--   76 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~~--   76 (211)
                      .++|+++|++|+|||||+++|.+..+.....++ ..+.....+.+++  ..+.+|||||++.+...      ...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            589999999999999999999987653333232 3334444556666  56789999999887532      244454  


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      ++|++++|+|+++.+..    ..|+..+.+.  +.|+++|+||+|+...+.          +.. ++.++++.++. +++
T Consensus        81 ~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~~  142 (165)
T 2wji_A           81 KPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KVV  142 (165)
T ss_dssp             CCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CEE
T ss_pred             CCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CEE
Confidence            89999999999886533    3455555543  799999999999865432          222 35677888886 999


Q ss_pred             EecCCCCCCHHHHHHHHHHHH
Q 028239          157 ECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ++||++|.|++++|+++.+.+
T Consensus       143 ~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          143 PLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999998875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.4e-27  Score=179.99  Aligned_cols=166  Identities=12%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc---------ccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS---------RLRPL   73 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~   73 (211)
                      .+.++|+|+|.+|+|||||+++|++..+.. .+..+........+..++  +.+.+|||||+....         ..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            467999999999999999999999987642 222223333333444455  567899999984321         11123


Q ss_pred             cccCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHH---HHHHHHHH
Q 028239           74 SYRGADIFVLAFSLISRASYENV-LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTA---QGEELRKQ  149 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~  149 (211)
                      ++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+...+.          +...   +..+++..
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  174 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN  174 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence            46788999999999998876521 1456666665556899999999999976543          4433   45666666


Q ss_pred             hC-CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          150 IG-AAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       150 ~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .+ ..+++++||++|.|++++|++|.+.+.+.+
T Consensus       175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          175 VKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            65 138999999999999999999999986544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=6.3e-27  Score=166.61  Aligned_cols=150  Identities=21%  Similarity=0.180  Sum_probs=107.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-------ccccccccC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-------RLRPLSYRG   77 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~   77 (211)
                      .||+++|++|+|||||++++.+..+  ...+.++..+.....+..++.  .+.+||+||++.+.       ..+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            6899999999999999999998874  334444444555566667774  56799999988742       334556889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      +|++++|+|++++.+...  ..+...+...  +.|+++|+||+|+...+.              ++.+++ ..+..++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~  140 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP  140 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence            999999999998655443  2333444443  799999999999976421              122333 455547999


Q ss_pred             ecCCCCCCHHHHHHHHHHHH
Q 028239          158 CSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~  177 (211)
                      +||++|.|++++|+++.+.+
T Consensus       141 ~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          141 TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CBTTTTBSHHHHHHHHHHHC
T ss_pred             EecccCCChHHHHHHHHHhC
Confidence            99999999999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3.9e-27  Score=173.04  Aligned_cols=159  Identities=16%  Similarity=0.166  Sum_probs=107.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCC----------CcCcccc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAG----------QEDYSRL   70 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G----------~~~~~~~   70 (211)
                      .....++|+|+|++|+|||||+++|++..+...+.++.+.... .....++   .+.+|||||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            4556799999999999999999999998765555555443332 2233443   477999999          5556666


Q ss_pred             ccccccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccH--HHHHH
Q 028239           71 RPLSYRGA---DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITT--AQGEE  145 (211)
Q Consensus        71 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~  145 (211)
                      +..+++.+   |++++|+|++++.++.+.  .+...+..  .+.|+++|+||+|+...+.          +..  ++..+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~  161 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQ  161 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence            66666666   999999999998887764  33344443  3799999999999976542          221  22222


Q ss_pred             -HHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          146 -LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       146 -~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                       +....+ .+++++||++|.|++++|+++.+.+.
T Consensus       162 ~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          162 TLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence             221223 48999999999999999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=3.7e-27  Score=197.99  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=124.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE-------EE--CCeEEEEEEEeCCCCcCcccccc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-------AV--DGSIVNLGLWDTAGQEDYSRLRP   72 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-------~~--~~~~~~l~l~D~~G~~~~~~~~~   72 (211)
                      .....+||+++|.+|+|||||++++.+..+...+.+|.+..+....       .+  ++..+.+.+||+||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3556799999999999999999999999988888788765554321       11  23357788999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      .+++.+|++++|||+++.+   .. ..|...+....++.|+++|+||+|+...+.          +..++..+++...+.
T Consensus       117 ~~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~  182 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN  182 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred             HHccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence            9999999999999998753   34 678888888777899999999999987554          677888888888887


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCCch
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                       +++++||++|.|++++|+.+.+.+.....
T Consensus       183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          183 -RFHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             -ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence             89999999999999999999999877543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.6e-26  Score=168.84  Aligned_cols=159  Identities=15%  Similarity=0.180  Sum_probs=119.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc------cccccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR------LRPLSY   75 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~   75 (211)
                      +-+.++|+++|++|+|||||+++|.+..+.. .++++........+..++  +.+.+|||||++.+..      ++..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            4467899999999999999999999876332 233333344455566666  6677999999988753      344455


Q ss_pred             c--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           76 R--GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        76 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      +  .+|++++|+|.++   ++.. ..|...+..  .+.|+++|+||+|+...+.          +. .+..++++..+. 
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-  143 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-  143 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred             hccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence            3  5999999999876   3444 556666655  3899999999999876432          22 345677888887 


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +++++||+++.|++++|+++.+.+....
T Consensus       144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          144 KVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.6e-25  Score=175.77  Aligned_cols=164  Identities=16%  Similarity=0.143  Sum_probs=129.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcCcc----------
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQEDYS----------   68 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~----------   68 (211)
                      ++...-.|+++|.+|+|||||+|+|++..+.  .....++..........+ +  +.+.||||||+..+.          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            4556779999999999999999999998864  344444444444555555 5  567799999986654          


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      ..+..+++.+|++++|+|++++.++.+. ..|...+...  +.|+++|+||+|+.....          ........+.+
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~  150 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHK  150 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHH
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHH
Confidence            3445578899999999999999888887 6777777764  899999999999973332          55667777888


Q ss_pred             HhC-CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          149 QIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       149 ~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ..+ ..+++++||++|.|++++|+++.+.+...
T Consensus       151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          151 KHPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            874 45899999999999999999999998654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=3.9e-26  Score=164.92  Aligned_cols=153  Identities=22%  Similarity=0.222  Sum_probs=114.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~   74 (211)
                      ..++|+++|.+|+|||||+++|.+..+  ...+.++..+.....+.+++..  +.+|||||++.+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998763  3455566666666777888754  6799999987653211        124


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      ++.+|++++|||++++.++..  ..|+..+.... .++|+++|+||+|+......         .        ++..+ .
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---------~--------~~~~~-~  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG---------M--------SEVNG-H  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE---------E--------EEETT-E
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh---------h--------hhccC-C
Confidence            789999999999999888764  46666666654 47999999999998643210         0        01123 3


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +++++||++|.|++++|+++.+.+..
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999999987643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=2.5e-26  Score=168.42  Aligned_cols=162  Identities=17%  Similarity=0.165  Sum_probs=113.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCC----------CcCcccc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGSIVNLGLWDTAG----------QEDYSRL   70 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~D~~G----------~~~~~~~   70 (211)
                      +....++|+++|++|+|||||+++|++..+. .+.++.+...... ...+.   .+.+||+||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            3456789999999999999999999998733 2233333222222 22332   366999999          4555555


Q ss_pred             ccccccCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH
Q 028239           71 RPLSYRGA---DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR  147 (211)
Q Consensus        71 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (211)
                      +..+++.+   |++++|+|+++..+....  .+...+...  +.|+++|+||+|+.....        .....++..+++
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~  162 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVF  162 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHH
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHH
Confidence            66665554   999999999876554442  223333333  799999999999975421        124445666777


Q ss_pred             HHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          148 KQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       148 ~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ...+..+++++||++|.|++++|+++.+.+.+
T Consensus       163 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          163 SKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             hhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            77665699999999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=9.4e-26  Score=172.89  Aligned_cols=155  Identities=17%  Similarity=0.223  Sum_probs=119.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc------cccc-
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR------PLSY-   75 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~------~~~~-   75 (211)
                      .+.++|+++|++|+|||||+++|.+..+ ...+++++.+.....+...+  +.+.+||+||...+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999998764 33444444444455555555  667799999998887643      3444 


Q ss_pred             -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           76 -RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                       ..+|++++|+|+++.++..    .|...+...  +.|+++|+||+|+...+.          +. .+..++++.++. +
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~  142 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P  142 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred             hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence             5899999999999876543    344455544  899999999999876443          22 236778888887 9


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ++++||++|.|++++|+++.+.+.
T Consensus       143 vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          143 VVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCcCHHHHHHHHHHHhh
Confidence            999999999999999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=8.9e-27  Score=170.29  Aligned_cols=158  Identities=17%  Similarity=0.228  Sum_probs=115.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------CcCccccccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG-----------QEDYSRLRPLSY   75 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~~~~   75 (211)
                      +||+++|++|+|||||+++|.+..+...+.++.. .....+..+    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT-TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc-ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999887666555432 112223333    477999999           455666666667


Q ss_pred             cC-CcEEEEEEECCChhhHHHHHHHHHHH--------H-hhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHH
Q 028239           76 RG-ADIFVLAFSLISRASYENVLKKWMPE--------L-RRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE  144 (211)
Q Consensus        76 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (211)
                      +. ++++++||++.+..++..+...|...        + .... .+.|+++|+||+|+....             .++..
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~  143 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN  143 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence            66 77777777777777877764566542        1 1111 489999999999987642             45677


Q ss_pred             HHHHHhCCc------eEEEecCCCCCCHHHHHHHHHHHHcCCch
Q 028239          145 ELRKQIGAA------AYIECSSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       145 ~~~~~~~~~------~~~~~sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      ++++.++..      +++++||++|.|++++|+++.+.+.+...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            788888862      37999999999999999999998865443

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=1.2e-25  Score=173.31  Aligned_cols=153  Identities=16%  Similarity=0.171  Sum_probs=114.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc------ccccccc-
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR------LRPLSYR-   76 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~~-   76 (211)
                      ..++|+++|++|+|||||+++|.+.. +...+++++.+....  .++. .+.+.+||+||+..+..      ++..++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            45899999999999999999999875 555555444333222  2333 45688999999988763      3344554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           77 -GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        77 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                       .+|++++|+|+++.++..    .|...+...  +.|+++|+||+|+...+.          +. .+...+++.++. ++
T Consensus        79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v  140 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV  140 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence             699999999999866543    444445443  899999999999875432          22 345677888887 99


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHc
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +++||++|.|++++|+++.+.+.
T Consensus       141 i~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          141 VATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             EECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEEccCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=1.5e-24  Score=169.53  Aligned_cols=158  Identities=18%  Similarity=0.132  Sum_probs=113.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc--------ccccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY--------SRLRPLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~   74 (211)
                      +..+|+++|.+|+|||||+|+|++..+..  ..+.|+.......+..++  ..+.||||||....        ......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            45689999999999999999999988642  333444443333444444  66779999998763        3344557


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++++|+|++++.+..+  ..+...+....++.|+++|+||+|+.....          ...+...++   .+..+
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~~~~~~~~~---~~~~~  148 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------EAMKAYHEL---LPEAE  148 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------HHHHHHHHT---STTSE
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------HHHHHHHHh---cCcCc
Confidence            899999999999998765554  344456665556899999999999875421          011222222   34457


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++++||++|.|++++|+.+.+.+.+
T Consensus       149 ~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          149 PRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             EEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhccc
Confidence            9999999999999999999987643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=3.2e-24  Score=176.83  Aligned_cols=156  Identities=16%  Similarity=0.150  Sum_probs=100.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~   74 (211)
                      ..++|+++|.+|+|||||+|+|++..  +...+.+++.+.....+.+++  +.+.+|||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            35899999999999999999999875  556677777777777788888  457799999987766443        336


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++++|+|++++.+++.+ ..+...+... .+.|+++|+||+|+.....          .   ...++.+... .+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~~~-~~  373 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADGTG-TE  373 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHHHT-SC
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhcCC-Cc
Confidence            7899999999999998887533 3333333322 3799999999999976542          2   1133444322 48


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ++++||++|.|++++|++|.+.+.
T Consensus       374 ~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          374 VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999986

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=3.3e-25  Score=169.64  Aligned_cols=150  Identities=15%  Similarity=0.222  Sum_probs=114.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----------cccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----------LRPLSY   75 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------~~~~~~   75 (211)
                      .+|+++|.+|+|||||+++|.+... ...+++++.+.....+..++.  .+.+||+||...+..          ++..++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998863 334455555666667777775  667999999987764          334455


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           76 --RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                        +.+|++++|+|+++.++...+    ...+...  +.|+++|+||+|+...+.          +. .....+.+.++. 
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-  141 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC-  141 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence              899999999999997655443    3334433  799999999999876442          11 123457777886 


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHH
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++++||++|.|++++|+++.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          142 SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999999886

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=6.3e-25  Score=164.61  Aligned_cols=165  Identities=11%  Similarity=0.019  Sum_probs=109.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCCcC----------cc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIPTVFDNFSANVAVD-GSIVNLGLWDTAGQED----------YS   68 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~D~~G~~~----------~~   68 (211)
                      ....++|+|+|.+|+|||||+++|++..   ......++.....  ...+. .....+.||||||...          +.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            4567899999999999999999999986   2333333332222  22222 2235577999999533          23


Q ss_pred             ccccccccC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           69 RLRPLSYRG---ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        69 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      ..+..+++.   +|++++|+|+++..+..+  ..|+..+...  +.|+++|+||+|+......        .....+..+
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~  171 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQK  171 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHH
Confidence            333344443   888999999988655443  4566666654  7999999999999764320        001122223


Q ss_pred             HHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          146 LRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       146 ~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .....      ...+++++||++|.|++++|++|.+.+....
T Consensus       172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            33332      4458999999999999999999999986543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=3.2e-25  Score=171.39  Aligned_cols=156  Identities=14%  Similarity=0.177  Sum_probs=115.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----------cc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----------PL   73 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----------~~   73 (211)
                      +.++|+++|.+|+|||||+|+|++..+. ..+.+++.+.....+...+.  .+.+|||||+..+....          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            3589999999999999999999987742 33444445555566666664  45699999998876321          11


Q ss_pred             c--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           74 S--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        74 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      +  .+.+|++++|+|+++.+....+    ...+...  ++|+++|+||+|+...+.          +. .....+.+.++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg  142 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLG  142 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcC
Confidence            2  2799999999999986654443    3344444  799999999999876432          11 22456777888


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      . +++++||++|.|++++|+++.+.+...
T Consensus       143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          143 C-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            7 999999999999999999998877644

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=6.3e-24  Score=163.99  Aligned_cols=156  Identities=17%  Similarity=0.158  Sum_probs=116.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc------cccccc--c
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR------LRPLSY--R   76 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~--~   76 (211)
                      .++|+++|++|+|||||+++|.+..+.. .+.+++.+.....+..++..  +.+||+||...+..      .+..++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            5899999999999999999999887532 33333445555566677744  67999999988776      344444  6


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|++++|+|+++.+..    ..|...+... ...|+++|+||+|+...+.          +.. ....+.+.++. +++
T Consensus        81 ~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~~  143 (271)
T 3k53_A           81 NADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PVI  143 (271)
T ss_dssp             CCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CEE
T ss_pred             CCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cEE
Confidence            89999999999986432    2333333333 1399999999999875432          222 26677888887 999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++||++|.|++++|+.+.+.+...
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999987543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.9e-24  Score=177.23  Aligned_cols=159  Identities=17%  Similarity=0.200  Sum_probs=115.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC----------cccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED----------YSRLRP   72 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~   72 (211)
                      ..++|+++|.+|+|||||+++|++...  ...+.+++.+.....+..++..  ++||||||+.+          |...+.
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence            568999999999999999999998874  4566677777777777788854  66999999843          222222


Q ss_pred             -ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHHHh
Q 028239           73 -LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRKQI  150 (211)
Q Consensus        73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  150 (211)
                       .+++.+|++++|+|++++.++++.  .|...+...  +.|+++|+||+|+.+.+.          ...++. .++.+.+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l  317 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF  317 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence             367889999999999999988885  566666543  899999999999976542          333332 2222322


Q ss_pred             ---CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          151 ---GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       151 ---~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                         ...+++++||++|.|++++|+.+.+.+..
T Consensus       318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence               23499999999999999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=4.5e-25  Score=164.92  Aligned_cols=143  Identities=12%  Similarity=0.134  Sum_probs=102.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccC--
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRG--   77 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~--   77 (211)
                      ..+.++|+++|++|+|||||+++|.+..+...   +.++....+        ..+.+.+||+||++.++..+..+++.  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            34678999999999999999999999886542   333332222        33567799999999998888888776  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCcEEEEeeCCCcccCccccccccCCcccc------HHHH
Q 028239           78 --ADIFVLAFSLI-SRASYENVLKKWMPELRRF-----APNVPIVLVGTKLDLREDRGYLADHVGSNVIT------TAQG  143 (211)
Q Consensus        78 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  143 (211)
                        +|++++|||++ +++++..+ ..|+..+...     .+++|+++|+||+|+.....          +.      .+++
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~  149 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEI  149 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHH
Confidence              89999999999 88888888 5555554432     25899999999999977543          22      4556


Q ss_pred             HHHHHHhCCceEEEecCCCCCC
Q 028239          144 EELRKQIGAAAYIECSSKTQQN  165 (211)
Q Consensus       144 ~~~~~~~~~~~~~~~sa~~~~~  165 (211)
                      ..++...+. +|+++||++|.+
T Consensus       150 ~~~~~~~~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          150 QKVIERRKK-SLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHHH-HHHC--------
T ss_pred             HHHHHHHhc-cccccccccccc
Confidence            677777665 899999998875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=4.2e-24  Score=176.17  Aligned_cols=161  Identities=19%  Similarity=0.219  Sum_probs=121.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------CcCccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG----------QEDYSRLR   71 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~   71 (211)
                      ...++|+++|.+++|||||+++|++..  ....+.+++.+.....+..++.  .+++|||||          ++.|...+
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            356899999999999999999999765  4556667777777777778885  567999999          55555554


Q ss_pred             cc-cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239           72 PL-SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI  150 (211)
Q Consensus        72 ~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (211)
                      .. +++.+|++++|+|+++..+..+  ..|...+...  +.|+++|+||+|+...+.          +..++..+.++..
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  336 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence            43 6788999999999988665444  4566666554  799999999999986543          5566666666555


Q ss_pred             ----CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          151 ----GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       151 ----~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                          +..+++++||++|.|++++|+.+.+.+...
T Consensus       337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence                235999999999999999999999887543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=3e-23  Score=170.28  Aligned_cols=152  Identities=22%  Similarity=0.237  Sum_probs=106.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---------cccccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---------SRLRPLSY   75 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------~~~~~~~~   75 (211)
                      .+|+++|.+|+|||||+|+|++..  +...+++++.+.....+.+++..  +.+|||||.+..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            479999999999999999999876  35666677777777778888854  569999997653         22345578


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHH-HHHHHHhCCce
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQG-EELRKQIGAAA  154 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  154 (211)
                      +++|++++|+|++++.+..+  ..+...++..  +.|+++|+||+|+...            . ..+. .++. ..+..+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~  141 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE  141 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence            99999999999988766554  2333344443  7999999999997532            1 1122 3333 455446


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ++++||++|.|++++|+++.+.+.
T Consensus       142 ~~~iSA~~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          142 PIPVSAEHNINLDTMLETIIKKLE  165 (439)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCHHHHHHHHHHhcc
Confidence            899999999999999999998885

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=1.6e-22  Score=161.85  Aligned_cols=160  Identities=18%  Similarity=0.167  Sum_probs=117.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc---------ccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL---------RPL   73 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~---------~~~   73 (211)
                      ...++|+++|++|+|||||+++|.+..+. ..+..++.......+..++  ..+.+|||||.......         ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            35689999999999999999999987642 1222333222223333444  56779999998553211         112


Q ss_pred             cccCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC
Q 028239           74 SYRGADIFVLAFSLISRA--SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG  151 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (211)
                      ....+|++++|+|+++..  ++... ..|+..+....++.|+++|+||+|+.....            .++...++...+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~  309 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG  309 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence            345799999999998876  67776 678777777555899999999999976432            244556666666


Q ss_pred             CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          152 AAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       152 ~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      . +++++||++|+|++++|+++.+.+..
T Consensus       310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          310 L-NPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             C-CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             C-CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            6 89999999999999999999999854

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=2.8e-24  Score=174.51  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=115.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc-------c
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL-------S   74 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------~   74 (211)
                      ...++|+|+|.+++|||||+++|++..+  ...+.+++.+.....+.+.+. ..+.+|||||++.+......       +
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            4578999999999999999999998875  344555555555566666654 26779999999888765333       6


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++++|+|++..+.   . ..|+..+...  +.|+++|+||+|+.....          .  +...++.+.++. +
T Consensus       111 l~~aD~vllVvD~~~~~~---~-~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY---E-DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH---H-HHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHH---H-HHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-C
Confidence            889999999999833222   1 5666667666  899999999999987643          2  556666667776 9


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++++||++|.|++++|++|.+.+.+.
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999998543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=4.8e-23  Score=163.86  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=99.7

Q ss_pred             EEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCcEE
Q 028239           47 VAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RASYENVLKKWMPELRRF--APNVPIV  114 (211)
Q Consensus        47 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~i  114 (211)
                      +.+++  +.+++||++|++.++..|..++++++++|+|||+++          ..++.+. ..|+..+...  .+++|+|
T Consensus       188 ~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~pii  264 (353)
T 1cip_A          188 FTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSII  264 (353)
T ss_dssp             EEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEE
T ss_pred             EeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEE
Confidence            34444  778899999999999999999999999999999999          4568888 6666666543  2689999


Q ss_pred             EEeeCCCcccCcccc-----ccccCCccccHHHHHHHHHH----------hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          115 LVGTKLDLREDRGYL-----ADHVGSNVITTAQGEELRKQ----------IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       115 vv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++||+|+...+...     ....-...++.+++.+++..          .....+++|||+++.||.++|+++.+.+..
T Consensus       265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            999999986432110     00001123677888888873          233489999999999999999999998864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=1.8e-23  Score=172.48  Aligned_cols=151  Identities=21%  Similarity=0.226  Sum_probs=117.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc-Cccccc--------ccc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE-DYSRLR--------PLS   74 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~-~~~~~~--------~~~   74 (211)
                      .++|+++|.+|+|||||+|+|.+..  +...+.+|+.+.....+.+++.  .+.+|||||.. .+....        ..+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999875  5677778887777788888884  56799999987 655322        235


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++|+|+|++++.++++. . +++.+    .+.|+++|+||+|+...            +..++..++.. .+ .+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~-~~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TD-RH  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CS-TT
T ss_pred             hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CC-Cc
Confidence            7889999999999998887764 3 33333    37899999999999653            23344444332 22 38


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ++++||++|.|++++|++|.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=6.2e-23  Score=161.08  Aligned_cols=132  Identities=15%  Similarity=0.152  Sum_probs=99.3

Q ss_pred             EEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC--CCCcEE
Q 028239           47 VAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SRASYENVLKKWMPELRRFA--PNVPIV  114 (211)
Q Consensus        47 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~--~~~p~i  114 (211)
                      +.+++  +.+++||++|++++++.|..++++++++|+|||++          +..++.+. ..|+..+....  +++|++
T Consensus       162 ~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~ii  238 (327)
T 3ohm_A          162 FDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVI  238 (327)
T ss_dssp             EEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEE
T ss_pred             EEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEE
Confidence            34444  77889999999999999999999999999999665          66778887 45555554332  689999


Q ss_pred             EEeeCCCcccCcccc------ccccCCccccHHHHHHHHH----------HhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          115 LVGTKLDLREDRGYL------ADHVGSNVITTAQGEELRK----------QIGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       115 vv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      |++||+|+...+...      .++..-..++.+++.++..          ..+ ..+++|||+++.||..+|..+.+.++
T Consensus       239 L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          239 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTIL  317 (327)
T ss_dssp             EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHH
Confidence            999999987644211      1112222467788887743          233 47899999999999999999999987


Q ss_pred             CCch
Q 028239          179 QPPR  182 (211)
Q Consensus       179 ~~~~  182 (211)
                      +...
T Consensus       318 ~~~l  321 (327)
T 3ohm_A          318 QLNL  321 (327)
T ss_dssp             HTTC
T ss_pred             HHhH
Confidence            6543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=4.3e-22  Score=161.76  Aligned_cols=169  Identities=12%  Similarity=0.053  Sum_probs=115.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-------eEEE---------EE---CCeEEEEEEEeCC
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-------SANV---------AV---DGSIVNLGLWDTA   62 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-------~~~~---------~~---~~~~~~l~l~D~~   62 (211)
                      .....++|+++|++++|||||+++|++...............       ...+         ..   ......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            456789999999999999999999998543221100000000       0000         00   1123678899999


Q ss_pred             CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239           63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ  142 (211)
Q Consensus        63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (211)
                      |++.|...+...+..+|++++|+|++++.++... ..++..+.... ..|+++|+||+|+.+....        ....++
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~--------~~~~~~  153 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEA--------LSQYRQ  153 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------HHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHH--------HHHHHH
Confidence            9999999888889999999999999988755555 55555555442 3589999999999764310        011122


Q ss_pred             HHHHHHHhC--CceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          143 GEELRKQIG--AAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       143 ~~~~~~~~~--~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ..++....+  ..+++++||++|.|++++++.|.+.+...
T Consensus       154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            233332221  24899999999999999999999877554

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=1.9e-23  Score=166.09  Aligned_cols=127  Identities=15%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeC
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SRASYENVLKKWMPELRRF--APNVPIVLVGTK  119 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK  119 (211)
                      ..+.+++||++|++.+++.|..++++++++|+|||++          +..++.+. ..|+..+...  .+++|++||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          78899998 6666666543  268999999999


Q ss_pred             CCcccCccccc--------cccC---CccccHHHHHHHHHHh---------------CCceEEEecCCCCCCHHHHHHHH
Q 028239          120 LDLREDRGYLA--------DHVG---SNVITTAQGEELRKQI---------------GAAAYIECSSKTQQNVKAVFDTA  173 (211)
Q Consensus       120 ~Dl~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~---------------~~~~~~~~sa~~~~~v~~lf~~l  173 (211)
                      +|+..++....        ++..   ....+.+++.+++...               ....+++|||+++.||.++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            99865432110        0000   0122456777764431               22356899999999999999999


Q ss_pred             HHHHcC
Q 028239          174 IKVVLQ  179 (211)
Q Consensus       174 ~~~~~~  179 (211)
                      .+.+.+
T Consensus       340 ~~~I~~  345 (354)
T 2xtz_A          340 DETLRR  345 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998853

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=9.4e-22  Score=153.85  Aligned_cols=159  Identities=16%  Similarity=0.129  Sum_probs=113.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc---------Ccccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE---------DYSRLRP   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~   72 (211)
                      .+..+|+++|++|+|||||+++|++..+.  .....++.......+..++  ..+.+|||||..         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            45568999999999999999999998742  2233343333333344455  567799999987         3445566


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      ..++.+|++++|+|+++ -+-.+  ..+...+..  .+.|+++++||+|+...+.          .......++.+..+.
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~  148 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF  148 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence            78899999999999977 33222  233333433  3799999999999876221          234455566666665


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ..++++||+++.|++++++.+.+.+..
T Consensus       149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          149 LDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            579999999999999999999987643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=8.9e-23  Score=161.74  Aligned_cols=158  Identities=20%  Similarity=0.238  Sum_probs=118.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc----Ccccccccccc---CCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE----DYSRLRPLSYR---GAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~----~~~~~~~~~~~---~~d   79 (211)
                      +|+|+|.++||||||+++|.+..+ ...+..++.......+.+++. ..+.+||+||..    .+..+...+++   .+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            689999999999999999998753 234444443333344555541 357799999953    34445455554   499


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-
Q 028239           80 IFVLAFSLIS---RASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-  152 (211)
Q Consensus        80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (211)
                      ++|+|+|+++   .++++++ ..|...+..+.   .+.|+++|+||+|+....              +...++.+.+.. 
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~~  303 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  303 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhcC
Confidence            9999999998   7888888 78888888764   489999999999986531              334566666652 


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      .+++++||+++.|++++|++|.+.+.+..
T Consensus       304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          304 YPVFPISAVTREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence            38999999999999999999999986644

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=1.3e-22  Score=166.68  Aligned_cols=154  Identities=21%  Similarity=0.287  Sum_probs=108.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccc--------cc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRP--------LS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~--------~~   74 (211)
                      ..++|+++|++|+|||||+|+|++..  +.....+++.+.....+.+++.  .+.+|||||...+...++        ..
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35799999999999999999999864  4556666776666677778884  467999999866554332        35


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++.+|++++|+|++++.+...  ..|+..+.    +.|+++|+||+|+.....          +.  ...++.   ...+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~---~~~~  359 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE---NITQ  359 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT---TCCC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc---cCCc
Confidence            788999999999999877665  45555553    479999999999976543          11  000111   2248


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ++++||++|.|++++|++|.+.+....
T Consensus       360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          360 IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999886543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=3.7e-22  Score=168.03  Aligned_cols=165  Identities=15%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC--CCCC-----CCCCce------eeee---eEEEEE---CCeEEEEEEEeC
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIPTV------FDNF---SANVAV---DGSIVNLGLWDT   61 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~-----~~~~t~------~~~~---~~~~~~---~~~~~~l~l~D~   61 (211)
                      |..++..+|+++|+.++|||||+++|+..  .+..     ....+.      +..+   ...+.+   ++..+.++||||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            55567789999999999999999999862  2211     111110      1111   112222   456788999999


Q ss_pred             CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHH
Q 028239           62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTA  141 (211)
Q Consensus        62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  141 (211)
                      ||+.+|...+...++.+|++++|+|++++.+.+.. ..|.....   .+.|+++|+||+|+...+            ...
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~  144 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDR  144 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHH
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHH
Confidence            99999998888889999999999999999888877 66765543   278999999999997642            223


Q ss_pred             HHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          142 QGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       142 ~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      ...++.+.++.  .+++++||++|.|++++|+++++.+....
T Consensus       145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            34555565554  24899999999999999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=2.1e-21  Score=159.38  Aligned_cols=159  Identities=21%  Similarity=0.192  Sum_probs=109.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-----------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR-----------   71 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-----------   71 (211)
                      ..++|+++|++|+|||||+++|++...  ...+.+++.+.....+.+++..  +.+|||||..+.....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence            458999999999999999999998763  5566666666667778888864  5699999975443221           


Q ss_pred             -cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH-HHHHH
Q 028239           72 -PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE-ELRKQ  149 (211)
Q Consensus        72 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (211)
                       ...++.+|++++|+|+++..+.++.  .+...+...  +.|+++|+||+|+.+.+.          ...++.. .+.+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence             1245678999999999987776653  344444443  899999999999976432          2233222 22232


Q ss_pred             h---CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          150 I---GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       150 ~---~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +   ...+++++||++|.|++++|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2   23489999999999999999999887744

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=7.1e-22  Score=151.56  Aligned_cols=163  Identities=15%  Similarity=0.130  Sum_probs=107.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCc--eeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc-------
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPT--VFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL-------   73 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------   73 (211)
                      ...++|+|+|.+|+|||||+++|++.. +...+.++  +.......+..++  ..+.||||||+..+......       
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            356899999999999999999999877 44444333  3344444556666  45679999998766543222       


Q ss_pred             ----cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEee-CCCcccCccccccccCCccccH-------H
Q 028239           74 ----SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGT-KLDLREDRGYLADHVGSNVITT-------A  141 (211)
Q Consensus        74 ----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~~~~~~~~~~~-------~  141 (211)
                          .++.+|++++|+|+++..........++..+.......|.++++| |+|+....           +..       .
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~  166 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNK  166 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchH
Confidence                568899999999998633222111222222211111356666666 99997432           222       3


Q ss_pred             HHHHHHHHhCCc--eE--EEecCCCCCCHHHHHHHHHHHHcC
Q 028239          142 QGEELRKQIGAA--AY--IECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       142 ~~~~~~~~~~~~--~~--~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +...+.+..+..  ++  +++||+++.|++++|+++.+.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            345566666541  13  789999999999999999998865

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=2.3e-21  Score=157.68  Aligned_cols=166  Identities=16%  Similarity=0.149  Sum_probs=105.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeeeee-EEEEE-------------C--C----eEEE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFS-ANVAV-------------D--G----SIVN   55 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~   55 (211)
                      |++...++|+++|++++|||||+++|.+..   +.....+  |....+. ..+..             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            466778999999999999999999998543   2222222  2221111 11111             1  1    1377


Q ss_pred             EEEEeCCCCcCccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239           56 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD  131 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  131 (211)
                      +.+||+||++.|...+...+..+|++++|+|++++    ++.+.+ .    .+.. ....|+++|+||+|+.....    
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~-l~~~~iivv~NK~Dl~~~~~----  152 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEI-LGIDKIIIVQNKIDLVDEKQ----  152 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHH-TTCCCEEEEEECTTSSCTTT----
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHH-cCCCeEEEEEEccCCCCHHH----
Confidence            88999999999888777778899999999999864    444433 2    2222 22358999999999976431    


Q ss_pred             ccCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          132 HVGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                          .....+++.++++.+  ...+++++||++|.|+++++++|.+.+...
T Consensus       153 ----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          153 ----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             ----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             ----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence                012345556666543  234899999999999999999999877654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=6.6e-22  Score=166.74  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=114.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCC-----CCCCce------eeee---eEEEEE---CCeEEEEEEEeCCCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DYIPTV------FDNF---SANVAV---DGSIVNLGLWDTAGQE   65 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~-----~~~~t~------~~~~---~~~~~~---~~~~~~l~l~D~~G~~   65 (211)
                      +..+|+|+|++++|||||+++|+...  +..     ....+.      +..+   ...+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632  211     111110      1111   112222   4567899999999999


Q ss_pred             CccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           66 DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      +|...+...++.+|++|+|+|+++..+.+.. ..|......   ++|+++|+||+|+...+            ......+
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------~~~v~~e  146 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------PERVAEE  146 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------HHHHHHH
Confidence            9998888899999999999999998887776 666655432   78999999999997642            2233455


Q ss_pred             HHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          146 LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       146 ~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +.+.++.  .+++++||++|.|++++|+++.+.+....
T Consensus       147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            6666654  24899999999999999999999887654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=2.5e-21  Score=154.49  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=88.1

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCC
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RASYENVLKKWMPELRRF--APNVPIVLVGTKLD  121 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D  121 (211)
                      +.+++||++|++.++..|..++++++++|+|||+++          ..++.+. ..|+..+...  .+++|+||++||+|
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChh
Confidence            778899999999999999999999999999999999          6789988 5565655543  26899999999999


Q ss_pred             cccCcccc------ccccCCccccHHHHHHHHH-----------HhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          122 LREDRGYL------ADHVGSNVITTAQGEELRK-----------QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       122 l~~~~~~~------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +...+...      .++..-..++.+++..++.           ..+ ..+++|||+++.||.++|+++.+.+.+
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            96533110      0011011256777777662           223 478999999999999999999998864

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=1e-23  Score=175.44  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEE-CCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAV-DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ++.++|+++|++++|||||+++|.+..+.....++. .......+.. ++  ..+.||||||++.|..++..+++.+|++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~v   79 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIV   79 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEE
Confidence            356899999999999999999999766433333332 2222222333 23  3567999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH---HHHh-CCceEEE
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL---RKQI-GAAAYIE  157 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~  157 (211)
                      ++|+|+++....+.. ..| ..+...  ++|+++|+||+|+......        .+.. +...+   +..+ +..++++
T Consensus        80 ILVVDa~dg~~~qt~-e~l-~~~~~~--~vPiIVViNKiDl~~~~~~--------~v~~-~l~~~~~~~e~~~~~~~iv~  146 (537)
T 3izy_P           80 ILVVAADDGVMKQTV-ESI-QHAKDA--HVPIVLAINKCDKAEADPE--------KVKK-ELLAYDVVCEDYGGDVQAVH  146 (537)
T ss_dssp             EEECBSSSCCCHHHH-HHH-HHHHTT--TCCEEECCBSGGGTTTSCC--------SSSS-HHHHTTSCCCCSSSSEEECC
T ss_pred             EEEEECCCCccHHHH-HHH-HHHHHc--CCcEEEEEecccccccchH--------HHHH-HHHhhhhhHHhcCCCceEEE
Confidence            999999997766664 333 333333  7899999999999754320        0111 11111   1111 1248999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcC
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +||++|.|++++|+++...+..
T Consensus       147 vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          147 VSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             CCSSSSCSSHHHHHHHHHHHTT
T ss_pred             EECCCCCCchhHHHHHHHhhhc
Confidence            9999999999999999988753

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.87  E-value=6.3e-22  Score=155.92  Aligned_cols=125  Identities=15%  Similarity=0.144  Sum_probs=94.7

Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-hC-CCCcEEEEeeCC
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SRASYENVLKKWMPELRR-FA-PNVPIVLVGTKL  120 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~  120 (211)
                      .+.+++||++|++++++.|..++++++++|+|||++          +..++.+. ..|+..+.. .. +++|++|++||+
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECc
Confidence            377889999999999999999999999999999998          67888888 455554443 22 689999999999


Q ss_pred             CcccCcccc------ccccCCccccHHHHHHHHHH-h-------------------------CCceEEEecCCCCCCHHH
Q 028239          121 DLREDRGYL------ADHVGSNVITTAQGEELRKQ-I-------------------------GAAAYIECSSKTQQNVKA  168 (211)
Q Consensus       121 Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~sa~~~~~v~~  168 (211)
                      |+...+...      .++. ....+.+++.++... +                         ..+.+++|||++..||..
T Consensus       239 DL~~eki~~~~l~~~fp~y-~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEY-TGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTC-CCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhh-cCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            987543211      1111 112356666554433 2                         124789999999999999


Q ss_pred             HHHHHHHHHcC
Q 028239          169 VFDTAIKVVLQ  179 (211)
Q Consensus       169 lf~~l~~~~~~  179 (211)
                      +|+.+.+.+++
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999976

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.87  E-value=1.3e-21  Score=162.02  Aligned_cols=157  Identities=20%  Similarity=0.153  Sum_probs=110.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC----C---CCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK----F---PTDY-IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR   76 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~----~---~~~~-~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~   76 (211)
                      +.++|+++|++++|||||+++|.+..    .   .... .+.+.+.....+.+++  +.+.+|||||+++|...+...+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            57899999999999999999999765    1   1111 1111111222344566  56779999999998888888899


Q ss_pred             CCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-C-
Q 028239           77 GADIFVLAFSLISR---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-G-  151 (211)
Q Consensus        77 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  151 (211)
                      .+|++++|+|+++.   ++.+.+     ..+...  ++|+++|+||+|+.+...        .....++..+++... + 
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l-----~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~  160 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHM-----LILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNL  160 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH-----HHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSG
T ss_pred             hCCEEEEEEecCCCccHHHHHHH-----HHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccc
Confidence            99999999999884   444433     233333  788899999999975321        012234455555554 2 


Q ss_pred             -CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          152 -AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       152 -~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                       ..+++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          161 KNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             248999999999999999999999774

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=3.9e-23  Score=169.47  Aligned_cols=152  Identities=17%  Similarity=0.185  Sum_probs=101.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc--------Ccccccccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE--------DYSRLRPLSYR   76 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~~~~   76 (211)
                      ++|+++|.+|+|||||+|+|.+..+  ...+.+++.+.....+..++  ..+.+|||||++        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            6899999999999999999998764  34444554444444444555  457799999986        34455666789


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|++++|+|++++.+..+  ..+...+..  .+.|+++|+||+|+......              ..++. ..+..+++
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~--------------~~~~~-~lg~~~~~  142 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN--------------IYDFY-SLGFGEPY  142 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C--------------CCSSG-GGSSCCCE
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh--------------HHHHH-HcCCCCeE
Confidence            9999999999998877665  345455544  38999999999998754210              01111 23444789


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++||++|.|+.++++++.+.+.+
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EEeCcCCCChHHHHHHHHHhcCc
Confidence            99999999999999999988853

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=143.43  Aligned_cols=168  Identities=16%  Similarity=0.112  Sum_probs=106.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEeCCCCcC-----------cc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---TVFDNFSANVAVDGSIVNLGLWDTAGQED-----------YS   68 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~   68 (211)
                      ....++|+|+|.+|+|||||+++|++..+.....+   ++.......+.+++.  .+.||||||...           +.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence            34679999999999999999999999886444333   223334455666774  566999999532           33


Q ss_pred             ccccccccCCcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASY--ENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      ..+...++.+|++|+|+|++.....  ..+ ..+...+... ...|+++|+||+|+......  .+...  ...+..+++
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~--~~~i~--~~~~~l~~l  177 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLGDTNL--HDYLR--EAPEDIQDL  177 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCCcccH--HHHHH--hchHHHHHH
Confidence            3344456789999999998764432  222 2333222221 24699999999998654320  00000  012456778


Q ss_pred             HHHhCCceEEEecCCCC-----CCHHHHHHHHHHHHcC
Q 028239          147 RKQIGAAAYIECSSKTQ-----QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       147 ~~~~~~~~~~~~sa~~~-----~~v~~lf~~l~~~~~~  179 (211)
                      .+..+. .|+.+++..+     .++.++|+.+.+.+.+
T Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          178 MDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            888887 7888877654     6899999988887754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=1.7e-20  Score=150.01  Aligned_cols=160  Identities=18%  Similarity=0.156  Sum_probs=109.6

Q ss_pred             eE-EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC---------ccccccccc
Q 028239            7 IK-CVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED---------YSRLRPLSY   75 (211)
Q Consensus         7 ~~-I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~~   75 (211)
                      ++ |+++|++|+|||||+++|.+..+ ...+..++.+.....+.+++.  .+.+|||+|...         +...++ .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 99999999999999999998764 233444555566677788884  567999999632         222222 46


Q ss_pred             cCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-C
Q 028239           76 RGADIFVLAFSLISRA--SYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-G  151 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (211)
                      ..+|++++|+|++++.  ..... ..|...+.... .+.|+++|+||+|+.....         ......+..++..+ .
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence            8899999999998876  45554 66666666544 5789999999999865321         00112333344554 2


Q ss_pred             -CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          152 -AAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       152 -~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                       ..+++++||+++.|++++++.|.+.+..
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence             2368999999999999999999987754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.9e-21  Score=142.34  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccC---
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRG---   77 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~---   77 (211)
                      .+.++|+++|++|+|||||+++|.+..+...   +.++..        .+...+.+.+||+||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            4578999999999999999999999876441   111111        11133567799999999998888777765   


Q ss_pred             -CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCcEEEEeeCCCcccCc
Q 028239           78 -ADIFVLAFSLI-SRASYENVLKKWMPELRRF-----APNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        78 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~  126 (211)
                       +|++++|||++ +..++..+ ..|+..+...     .++.|+++|+||+|+....
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence             89999999999 89999888 5555444332     2589999999999997654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.85  E-value=1.7e-20  Score=153.81  Aligned_cols=160  Identities=15%  Similarity=0.121  Sum_probs=103.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------------CCceeeeeeEEEEEC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY------------------------------IPTVFDNFSANVAVD   50 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~   50 (211)
                      ....++|+++|++++|||||+++|+...  +....                              .+.+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            3467899999999999999999996532  11111                              111122222233344


Q ss_pred             CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239           51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---YE---NVLKKWMPELRRFAPNVP-IVLVGTKLDLR  123 (211)
Q Consensus        51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  123 (211)
                      +  ..+.||||||+++|...+...++.+|++++|+|+++...   |.   .. ......+...  ++| +|+|+||+|+.
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDP  168 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCc
Confidence            4  577899999999999888888999999999999988642   11   11 1222222222  566 99999999985


Q ss_pred             cCccccccccCCccccHHHHHHHHHHhCC-----ceEEEecCCCCCCHHHHHH
Q 028239          124 EDRGYLADHVGSNVITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD  171 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~lf~  171 (211)
                      .....   + .......++...+++..+.     .+++++||++|.|+.++++
T Consensus       169 ~~~~~---~-~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWS---N-ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchH---H-HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            42100   0 0000123344555555553     4799999999999999655

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=2.3e-21  Score=158.88  Aligned_cols=163  Identities=13%  Similarity=0.135  Sum_probs=105.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------------CCceeeeeeEEEE
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY------------------------------IPTVFDNFSANVA   48 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~   48 (211)
                      |+....++|+++|++++|||||+++|+..  .+....                              .+.+.+.....+.
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            56678899999999999999999999864  332111                              0111111111222


Q ss_pred             ECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHH------HHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           49 VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVL------KKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        49 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                      ..+  +.+.||||||+++|...+..+++.+|++|+|+|+++ .+|+...      ......+... ...|+++++||+|+
T Consensus        81 ~~~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl  156 (435)
T 1jny_A           81 TKK--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDL  156 (435)
T ss_dssp             CSS--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGG
T ss_pred             cCC--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccC
Confidence            333  567899999999999888889999999999999998 5666430      1222222222 22468999999999


Q ss_pred             ccCccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHHHH
Q 028239          123 REDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVFD  171 (211)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~lf~  171 (211)
                      .+....   + .......++..+++..++.    .+++++||++|.|+.+++.
T Consensus       157 ~~~~~~---~-~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          157 TEPPYD---E-KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             SSSTTC---H-HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CCcccc---H-HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            762100   0 0001234566777777762    4899999999999986543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=4.7e-21  Score=155.81  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=114.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCCcC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSN--------KFPTD--YIP-----TVFDNF-SANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~--------~~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      +...++|+++|++++|||||+++|.+.        .+...  ...     +.+..+ .....++.....+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456789999999999999999999873        11110  000     001111 12222332335677999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |...+...++.+|++|+|+|+++....+.  ..++..+...  ++| +++++||+|+.....       ......++..+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~  156 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD  156 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence            98888888999999999999998765544  3454555544  778 899999999974221       00012345666


Q ss_pred             HHHHhCC----ceEEEecCCCCCC------------------HHHHHHHHHHHHcCC
Q 028239          146 LRKQIGA----AAYIECSSKTQQN------------------VKAVFDTAIKVVLQP  180 (211)
Q Consensus       146 ~~~~~~~----~~~~~~sa~~~~~------------------v~~lf~~l~~~~~~~  180 (211)
                      +++.++.    .+++++||++|.|                  +.++++.|.+.+...
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            7777663    5899999999987                  788888888776543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.84  E-value=2.3e-20  Score=151.97  Aligned_cols=165  Identities=17%  Similarity=0.158  Sum_probs=110.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCC---CCCCCCC--ceeeeee-EEEEE-------------C--C----eEEEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFS-ANVAV-------------D--G----SIVNL   56 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~l   56 (211)
                      ++...++|+++|++++|||||+++|.+..   +.....+  |....+. ..+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            45677999999999999999999998543   2222222  2221111 11110             1  1    13678


Q ss_pred             EEEeCCCCcCccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239           57 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISR----ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH  132 (211)
Q Consensus        57 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  132 (211)
                      .||||||++.|...+...+..+|++++|+|+++.    ++.+.+ .    .+... ...|+++|+||+|+.....     
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~~~~-----  154 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVDKEK-----  154 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSCHHH-----
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCCHHH-----
Confidence            8999999999887777778889999999999864    344433 2    22222 2358999999999976431     


Q ss_pred             cCCccccHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          133 VGSNVITTAQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                         .....+++.+++...  ...+++++||++|.|+++++++|.+.+...
T Consensus       155 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          155 ---ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             ---HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ---HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence               001233444555432  234899999999999999999999877654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=1.8e-20  Score=158.16  Aligned_cols=168  Identities=15%  Similarity=0.124  Sum_probs=107.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeeeeEEE-------------EECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANV-------------AVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~l~l~D~~G~~~   66 (211)
                      .+.++|+++|++++|||||+++|++..+....    ..+.+..+....             .++.....++||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            46789999999999999999999876543321    112111111000             0000112478999999999


Q ss_pred             ccccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-----ccc--cCCc
Q 028239           67 YSRLRPLSYRGADIFVLAFSLIS---RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-----ADH--VGSN  136 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~--~~~~  136 (211)
                      |..++...++.+|++|+|+|+++   +++++.+ .    .+..  .++|+++++||+|+.......     ...  ....
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999999   5555544 2    2333  379999999999996432100     000  0000


Q ss_pred             cccH---H---HHHHHHHHh--------------CCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          137 VITT---A---QGEELRKQI--------------GAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       137 ~~~~---~---~~~~~~~~~--------------~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      .+..   +   +........              ...+++++||++|.|++++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0000   0   111111111              1248999999999999999999998764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.84  E-value=2.5e-21  Score=149.61  Aligned_cols=162  Identities=13%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCC-CCCCC-------CCcee-eeeeEEEEECCeEEEEEEEeCCCCcCcc----
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDY-------IPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYS----   68 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~----   68 (211)
                      .+...++|+|+|.+|+|||||+|+|++.. +...+       .+|.. ......+..++..+.+.+|||||.....    
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            45567999999999999999999988765 33333       23332 2233344445666789999999974321    


Q ss_pred             ---ccc-------cccc-------------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           69 ---RLR-------PLSY-------------RGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        69 ---~~~-------~~~~-------------~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                         .+.       ..++             ..+|+++++++.+.. ..-.+  ..++..+..   +.|+++|+||+|+..
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLT  158 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSC
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCC
Confidence               111       1111             237799999876652 22222  345555544   799999999999864


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ...        .........+.....+. +++.+||.+++|+++++++|.+.+
T Consensus       159 ~~e--------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          159 PEE--------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHH--------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             HHH--------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence            321        00111234445555666 899999999999999999998865

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=2.6e-20  Score=155.41  Aligned_cols=115  Identities=13%  Similarity=0.048  Sum_probs=83.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC------------------CCCC-----CCCceeeeeeEEEEECCeEEEEEEEeC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK------------------FPTD-----YIPTVFDNFSANVAVDGSIVNLGLWDT   61 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~------------------~~~~-----~~~t~~~~~~~~~~~~~~~~~l~l~D~   61 (211)
                      +..+|+|+|++++|||||+++|+...                  ..+.     ..+.........+...+  +.++||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            46799999999999999999997211                  0000     00111111123344455  66789999


Q ss_pred             CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ||+.+|...+..+++.+|++|+|+|+++..+.+.. ..| ..+...  ++|+++|+||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence            99999999999999999999999999998877775 444 344443  7999999999998643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=7.2e-22  Score=158.06  Aligned_cols=161  Identities=13%  Similarity=0.143  Sum_probs=89.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCC--------Cceeee-eeEEEEECCeEEEEEEEeCCCC-------cC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYI--------PTVFDN-FSANVAVDGSIVNLGLWDTAGQ-------ED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~--------~t~~~~-~~~~~~~~~~~~~l~l~D~~G~-------~~   66 (211)
                      ...++|+|+|++|+|||||+++|++.. +...+.        +|.... ....+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987654 333332        222222 2223344566788999999998       66


Q ss_pred             cccccc-------ccccC-----------CcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           67 YSRLRP-------LSYRG-----------ADIFVLAFSLIS-RASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        67 ~~~~~~-------~~~~~-----------~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      +..++.       .+++.           +++.+++|++++ ..++..+...|+..+   ..++|+|+|+||+|+...+.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence            666654       33333           223345666554 455555533444444   35799999999999976543


Q ss_pred             ccccccCCccccH--HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          128 YLADHVGSNVITT--AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                                +..  .++.++++..+. +++++||+++.+ ++.|.++.+.+.+
T Consensus       192 ----------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          192 ----------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             ----------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence                      333  466667777776 999999999998 8888888877754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.84  E-value=9.8e-21  Score=157.06  Aligned_cols=153  Identities=13%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEEECC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVAVDG   51 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~   51 (211)
                      ...+||+++|.+++|||||+++|+...  +...                              ..+...+.....+... 
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence            457999999999999999999997651  1110                              0011111111222333 


Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYEN-----VLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                       .+.+.||||||+++|...+...++.+|++|+|+|++++.++..     ........+.. ....|+|||+||+|+.+.+
T Consensus       110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTC
T ss_pred             -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccch
Confidence             3667899999999999988889999999999999998754321     10222222222 2245799999999997632


Q ss_pred             cccccccCCccccH----HHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239          127 GYLADHVGSNVITT----AQGEELRKQIGA----AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       127 ~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l  169 (211)
                      .          ...    ++...+...++.    .+|+++||++|.|++++
T Consensus       188 ~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          188 Q----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             H----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             H----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            2          222    233344444442    48999999999999753

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=2.1e-20  Score=151.50  Aligned_cols=165  Identities=18%  Similarity=0.124  Sum_probs=112.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC-------CCCC--CCCce-----eeee-eEEEEECCeEEEEEEEeCCCCcCccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK-------FPTD--YIPTV-----FDNF-SANVAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~-------~~~~--~~~t~-----~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      ..++|+++|++++|||||+++|.+..       +...  ...+.     +... .....++...+.+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998731       1110  00000     0011 11122322335677999999999888


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      .+...++.+|++|+|+|+++....+.. ..| ..+...  ++| +++++||+|+.....       ......++..++++
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT  150 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence            777889999999999999987655543 344 444443  788 689999999975221       00012345667777


Q ss_pred             HhCC----ceEEEecCCCCCC----------HHHHHHHHHHHHcCC
Q 028239          149 QIGA----AAYIECSSKTQQN----------VKAVFDTAIKVVLQP  180 (211)
Q Consensus       149 ~~~~----~~~~~~sa~~~~~----------v~~lf~~l~~~~~~~  180 (211)
                      .++.    .+++++||++|.|          +.++++.|.+.+..+
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            7763    4899999999764          899999998877543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.83  E-value=2.1e-21  Score=160.37  Aligned_cols=160  Identities=18%  Similarity=0.240  Sum_probs=106.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+..+|+++|++++|||||+++|.+..+.....+ .+.......+..++  ..+.||||||++.|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4678999999999999999999987654332221 11111112233344  35679999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc-ccccCCccccHHHHHHHHHHhC-CceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL-ADHVGSNVITTAQGEELRKQIG-AAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa  160 (211)
                      +|+|+++....+.. ..| ..+..  .+.|+++++||+|+....... .........       +++.++ ..+++++||
T Consensus        80 LVVda~~g~~~qT~-e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~-------~~~~~~~~~~~v~vSA  148 (501)
T 1zo1_I           80 LVVAADDGVMPQTI-EAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGI-------LPEEWGGESQFVHVSA  148 (501)
T ss_dssp             EEEETTTBSCTTTH-HHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCC-------CTTCCSSSCEEEECCT
T ss_pred             EEeecccCccHHHH-HHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhh-------hHHHhCCCccEEEEee
Confidence            99999884332222 222 22222  378999999999997532111 011000000       111222 248999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 028239          161 KTQQNVKAVFDTAIKV  176 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~  176 (211)
                      ++|.|++++|+++...
T Consensus       149 ktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          149 KAGTGIDELLDAILLQ  164 (501)
T ss_dssp             TTCTTCTTHHHHTTTT
T ss_pred             eeccCcchhhhhhhhh
Confidence            9999999999998754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=8.8e-20  Score=149.48  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=102.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CCCceeeee----------------------eEEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTVFDNF----------------------SANVAV   49 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~----------~~~t~~~~~----------------------~~~~~~   49 (211)
                      ...++|+++|++++|||||+++|+...  +...          ..++.+..+                      ...+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            346899999999999999999998653  1111          112211100                      011222


Q ss_pred             CCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-cEEEEeeCCCcccCccc
Q 028239           50 DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV-PIVLVGTKLDLREDRGY  128 (211)
Q Consensus        50 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~  128 (211)
                      ++  ..+.+|||||+++|...+...+..+|++|+|+|++++...+.  ..++..+...  +. |+++|+||+|+.+....
T Consensus       102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence            33  567899999999998888888999999999999998754443  3333444333  44 69999999999763210


Q ss_pred             cccccCCccccHHHHHHHHHHhC--C--ceEEEecCCCCCCHHHH
Q 028239          129 LADHVGSNVITTAQGEELRKQIG--A--AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~sa~~~~~v~~l  169 (211)
                            ......++..++++.++  .  .+++++||++|.|++++
T Consensus       176 ------~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          176 ------VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ------HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ------HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence                  00012345666777776  1  48999999999999884

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=2.9e-21  Score=159.27  Aligned_cols=152  Identities=17%  Similarity=0.179  Sum_probs=100.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC--------CcCccccccccc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAG--------QEDYSRLRPLSY   75 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G--------~~~~~~~~~~~~   75 (211)
                      ..+|+++|.+|+|||||+|+|.+..+.  ..+++++.+.....+...+  ..+.+|||||        ++.+...+..++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            469999999999999999999987642  3334444443333333344  4677999999        455556667778


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      +.+|++|+|+|..+..+..+  ..+...+..  .+.|+++|+||+|+.....              ...++ ...+....
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~  161 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP  161 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence            89999999999887655444  344455554  3899999999999864321              01111 12233356


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHc
Q 028239          156 IECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      +++||++|.|+.++++.+.+.+.
T Consensus       162 ~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          162 YPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             EECCTTTCTTHHHHHHHHHTTGG
T ss_pred             EEeecccccchHHHHHHHHhhcc
Confidence            79999999999999999988764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.82  E-value=2.9e-20  Score=149.05  Aligned_cols=147  Identities=14%  Similarity=0.056  Sum_probs=104.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      +|+++|++++|||||+++|+..       +.+.+.....+..++  +.+.+|||||+++|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~-------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK-------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE-------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC-------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            8999999999999999999811       111111112233334  457899999999998777777899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhhCCCCcE-EEEee-CCCcccCccccccccCCcccc--HHHHHHHHHHhC--CceEEE--ec
Q 028239           88 ISRASYENVLKKWMPELRRFAPNVPI-VLVGT-KLDLREDRGYLADHVGSNVIT--TAQGEELRKQIG--AAAYIE--CS  159 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~--~s  159 (211)
                      +... +... ..+...+...  ++|. ++++| |+|+ +.+.          +.  .++..++++..+  ..++++  +|
T Consensus        93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----------~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA----------IDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH----------HHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH----------HHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            5433 3333 4455555544  6777 88999 9999 4321          22  244555555443  258999  99


Q ss_pred             CCC---CCCHHHHHHHHHHHHcC
Q 028239          160 SKT---QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~---~~~v~~lf~~l~~~~~~  179 (211)
                      |++   +.|++++++.|.+.+..
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhccc
Confidence            999   99999999999988744

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.82  E-value=7.1e-21  Score=157.11  Aligned_cols=159  Identities=19%  Similarity=0.144  Sum_probs=91.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------C------CCCceeeeeeEEEEEC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS--NKFPT------------------------D------YIPTVFDNFSANVAVD   50 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~------------------------~------~~~t~~~~~~~~~~~~   50 (211)
                      ....++|+++|++++|||||+++|+.  +.+..                        +      ..+.+.......+..+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            45678999999999999999999975  22211                        0      0000101111123334


Q ss_pred             CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh---hHHH---HHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239           51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA---SYEN---VLKKWMPELRRFAPNVP-IVLVGTKLDLR  123 (211)
Q Consensus        51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  123 (211)
                      +  ..+.||||||+++|...+...+..+|++|+|+|+++..   +|+.   ....+ .....  .++| +|||+||+|+.
T Consensus       120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDEP  194 (467)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTST
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH--cCCCEEEEEEECccCC
Confidence            4  56779999999999998888899999999999999863   2221   10222 22222  2677 99999999996


Q ss_pred             cCccccccccCCccccHHHHHHHHHHh-CC-----ceEEEecCCCCCCHHHHH
Q 028239          124 EDRGYLADHVGSNVITTAQGEELRKQI-GA-----AAYIECSSKTQQNVKAVF  170 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~sa~~~~~v~~lf  170 (211)
                      ....   .. ........+...+++.. +.     .+++++||++|.|+.++|
T Consensus       195 ~~~~---~~-~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQW---SE-ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSS---CH-HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             Cccc---cH-HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            4210   00 00002234556666665 32     379999999999998765

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=4.1e-20  Score=152.27  Aligned_cols=157  Identities=13%  Similarity=0.073  Sum_probs=103.8

Q ss_pred             CC-CCceeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEE
Q 028239            1 MS-ASKFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------------------YIPTVFDNFSANV   47 (211)
Q Consensus         1 m~-~~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~   47 (211)
                      |. ....++|+++|++++|||||+++|+..  .+...                              ..+.+.+.....+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            54 346789999999999999999999864  22210                              0111111111223


Q ss_pred             EECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh---hH----HHHHHHHHHHHhhhCCCCc-EEEEeeC
Q 028239           48 AVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA---SY----ENVLKKWMPELRRFAPNVP-IVLVGTK  119 (211)
Q Consensus        48 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~ivv~nK  119 (211)
                      ..++  +.+.||||||+++|...+...+..+|++|+|+|+++..   +|    +.. ..+ ..+...  ++| +|+|+||
T Consensus        81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~-~~~~~~--~v~~iivviNK  154 (458)
T 1f60_A           81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHA-LLAFTL--GVRQLIVAVNK  154 (458)
T ss_dssp             ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHH-HHHHHT--TCCEEEEEEEC
T ss_pred             ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHH-HHHHHc--CCCeEEEEEEc
Confidence            3344  56889999999999988888899999999999998763   22    332 222 233332  565 8999999


Q ss_pred             CCcccCccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239          120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l  169 (211)
                      +|+......      ......++...+++.++.    .+++++||++|.|+.++
T Consensus       155 ~Dl~~~~~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHH------HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999742110      000123455666677763    48999999999998744

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.2e-19  Score=153.79  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=101.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC--CCC------------------------------CCCceeeeeeEEEEECC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTD------------------------------YIPTVFDNFSANVAVDG   51 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~------------------------------~~~t~~~~~~~~~~~~~   51 (211)
                      ...++|+++|++++|||||+++|+....  ...                              ..+++.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            4578999999999999999999986531  110                              01222222222333444


Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS---Y---ENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                        +.+.||||||+++|...+...++.+|++|+|+|++++..   +   ... ......+... ...|+|||+||+|+...
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccch
Confidence              567799999999999988889999999999999987531   1   111 1112222222 23459999999999763


Q ss_pred             ccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHHH
Q 028239          126 RGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV  169 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~l  169 (211)
                      ...      .......+...+....+.    .+++++||++|.|+.++
T Consensus       321 ~~~------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHH------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHH------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            210      000112334445555543    48999999999999876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.80  E-value=8e-20  Score=161.33  Aligned_cols=167  Identities=16%  Similarity=0.118  Sum_probs=112.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC-------CCC--CCC-----Cceeeee-eEEEEECCeEEEEEEEeCCCCcCc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK-------FPT--DYI-----PTVFDNF-SANVAVDGSIVNLGLWDTAGQEDY   67 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~-------~~~--~~~-----~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~   67 (211)
                      ....++|+++|++++|||||+++|.+..       +..  ...     .+.+.++ ...+.++...+.+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3457899999999999999999998631       100  000     0111111 011223333356789999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHHH
Q 028239           68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL  146 (211)
Q Consensus        68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (211)
                      ...+...++.+|++|+|+|+++....+..  .++..+...  ++| +|+|+||+|+.....       ......+++.++
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~el  441 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVREL  441 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHH
Confidence            88888889999999999999987554443  333444444  788 789999999975321       000123556677


Q ss_pred             HHHhCC----ceEEEecCCCC--------CCHHHHHHHHHHHHcCC
Q 028239          147 RKQIGA----AAYIECSSKTQ--------QNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       147 ~~~~~~----~~~~~~sa~~~--------~~v~~lf~~l~~~~~~~  180 (211)
                      ++.++.    .+++++||++|        .|+.++++.|.+.+..+
T Consensus       442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            777763    58999999999        46899999988876543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=2.6e-20  Score=145.50  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=100.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC------CCc-----------------------eeee-------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IPT-----------------------VFDN-------------   42 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~------~~t-----------------------~~~~-------------   42 (211)
                      ..++|+|+|.+|+|||||+++|++..+.+..      .++                       ..+.             
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4679999999999999999999998863211      121                       0000             


Q ss_pred             --------eeEEEEEC-CeEEEEEEEeCCCCcC-------------ccccccccccCCcEEE-EEEECCChhhHHHHHHH
Q 028239           43 --------FSANVAVD-GSIVNLGLWDTAGQED-------------YSRLRPLSYRGADIFV-LAFSLISRASYENVLKK   99 (211)
Q Consensus        43 --------~~~~~~~~-~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~   99 (211)
                              ....+.+. .....+.||||||...             +...+..+++.++.++ +|+|+++..+..+. ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                    00000000 0025678999999643             2334455777888666 79999876554443 34


Q ss_pred             HHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH--HHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239          100 WMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL--RKQIGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       100 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +...+...  +.|+++|+||+|+.....          ...+.....  ....+..+++++||++|.|++++|+.+.+
T Consensus       184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          184 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            55555433  789999999999976432          111111110  00112247889999999999999999877

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=3.3e-19  Score=132.14  Aligned_cols=162  Identities=14%  Similarity=0.001  Sum_probs=100.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCc----------cccc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDY----------SRLR   71 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~   71 (211)
                      -....+|+++|++|+|||||++++.+..+.....++.+... ...+.+++   .+.+||+||....          ....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998764433344443322 22333333   3569999997432          1111


Q ss_pred             cccc---cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHH
Q 028239           72 PLSY---RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRK  148 (211)
Q Consensus        72 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (211)
                      ..++   ..++++++|+|++++.+..+.  .+...+...  +.|+++++||+|+.....        +......+..++.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~  167 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL  167 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence            2233   578999999999887665431  222233332  789999999999865321        0012345555665


Q ss_pred             HhC-CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          149 QIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       149 ~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +.. ...++++||+++.|++++++.|.+.+.+
T Consensus       168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            554 2478899999999999999999887654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=5.2e-19  Score=135.78  Aligned_cols=118  Identities=14%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccccc------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYR------   76 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------   76 (211)
                      +.++|+++|.+|+|||||+++|++..+  ...+.++........+..++.  .+.||||||+..+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            579999999999999999999999873  445555554445555666774  6779999999888765544443      


Q ss_pred             ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-C--CCcEEEEeeCCCcccC
Q 028239           77 ---GADIFVLAFSLISRASYENVLKKWMPELRRFA-P--NVPIVLVGTKLDLRED  125 (211)
Q Consensus        77 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~  125 (211)
                         .+|++++|++++... +......|+..+.... .  ..|+++|+||+|+...
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence               789999999987654 3333246666666543 2  2499999999998643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.79  E-value=7.1e-20  Score=143.20  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=109.9

Q ss_pred             HHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHH
Q 028239           21 CMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLK   98 (211)
Q Consensus        21 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~   98 (211)
                      +|+.++..+.|. ..+.+|.++.+...+..++   .+++||+  +++++.++..+++++|++|+|||+++++ ++..+ .
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            678888888888 8888998877664433333   5789999  9999999999999999999999999997 67777 8


Q ss_pred             HHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHH
Q 028239           99 KWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus        99 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      .|+..+..  .++|+++|+||+|+.+.+.          +  +++.++++.++. .+++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            89887765  3899999999999976432          2  456677777762 38999999999999999987654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=1.1e-18  Score=149.58  Aligned_cols=116  Identities=18%  Similarity=0.084  Sum_probs=81.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----------------e-eeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----------------F-DNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      .+..+|+|+|+.|+|||||+++|++........++.                + ........+....+.+++|||||+++
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            456799999999999999999998533211111100                0 11112222222236788999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      |...+..+++.+|++++|+|+++....+..  .++..+...  ++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            988888889999999999999887665553  444444443  79999999999986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.77  E-value=2.6e-19  Score=151.41  Aligned_cols=162  Identities=18%  Similarity=0.159  Sum_probs=88.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCceeeeeeEEEEECC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------------YIPTVFDNFSANVAVDG   51 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~   51 (211)
                      ...++|+++|++++|||||+++|+...  +...                              ..+++.......+..+ 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            457899999999999999999996421  1100                              0011111111122223 


Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh---hH----HHHHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA---SY----ENVLKKWMPELRRFAPNVP-IVLVGTKLDLR  123 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  123 (211)
                       .+.+.||||||+++|...+...+..+|++|+|+|++++.   .+    +.  ......+...  ++| +|||+||+|+.
T Consensus       254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt--~e~l~~~~~l--gip~iIvviNKiDl~  328 (592)
T 3mca_A          254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT--REHAYLLRAL--GISEIVVSVNKLDLM  328 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSH--HHHHHHHHHS--SCCCEEEEEECGGGG
T ss_pred             -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHH--HHHHHHHHHc--CCCeEEEEEeccccc
Confidence             366789999999999998888999999999999998642   11    11  1112222222  565 99999999997


Q ss_pred             cCccccccccCCccccHHHHHHHH-HHhCC----ceEEEecCCCCCCHH--------------HHHHHHHHHH
Q 028239          124 EDRGYLADHVGSNVITTAQGEELR-KQIGA----AAYIECSSKTQQNVK--------------AVFDTAIKVV  177 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~sa~~~~~v~--------------~lf~~l~~~~  177 (211)
                      .....      .......+...+. ...+.    .+++++||++|.|+.              .|++.|...+
T Consensus       329 ~~~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          329 SWSED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             TTCHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             cccHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            52210      0001122333333 33343    379999999999998              6777766543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=1.5e-17  Score=138.90  Aligned_cols=115  Identities=18%  Similarity=0.124  Sum_probs=79.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------C--CCCc----------eeeee---eEEEEECCeEEEEEEEeC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT------D--YIPT----------VFDNF---SANVAVDGSIVNLGLWDT   61 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~------~--~~~t----------~~~~~---~~~~~~~~~~~~l~l~D~   61 (211)
                      +..+|+++|++++|||||+++|+...  +..      .  ...+          .+...   ...+...+  +.+.||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            56899999999999999999998632  100      0  0000          01111   12233444  67789999


Q ss_pred             CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ||+.+|...+..+++.+|++|+|+|+++......  ..+...+..  .++|+++++||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence            9999999888888999999999999988754433  333333333  37999999999998654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=2.3e-19  Score=140.20  Aligned_cols=162  Identities=13%  Similarity=0.119  Sum_probs=87.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC-CCCCCCC--------Ccee-eeeeEEEEECCeEEEEEEEeCCCC-------cCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN-KFPTDYI--------PTVF-DNFSANVAVDGSIVNLGLWDTAGQ-------EDY   67 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~-~~~~~~~--------~t~~-~~~~~~~~~~~~~~~l~l~D~~G~-------~~~   67 (211)
                      ..++|+|+|++|+|||||+++|++. .++....        ++.. ......+..++....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999998875 4433321        1111 111222233455578899999998       555


Q ss_pred             ccccc-------ccccC-------------CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           68 SRLRP-------LSYRG-------------ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        68 ~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      .....       .+++.             +++++++.+.+. .++.....   +.+....++.|+++|+||.|+...+.
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            54433       22221             233444443322 23333312   33333345789999999999875432


Q ss_pred             ccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                              .....+++.++++..+. +|+++||+++ +++++|..+.+.+...
T Consensus       173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred             --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence                    01234677888899887 9999999999 9999999999988653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.76  E-value=6.1e-18  Score=136.04  Aligned_cols=147  Identities=14%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             CCCCCCceeeee----------eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCC----------hh
Q 028239           32 PTDYIPTVFDNF----------SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------RA   91 (211)
Q Consensus        32 ~~~~~~t~~~~~----------~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~   91 (211)
                      .+.|.||..+.+          ...+.+++  +.+++||++|++.+++.|..++++++++|+|||+++          ..
T Consensus       187 ~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n  264 (402)
T 1azs_C          187 QDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN  264 (402)
T ss_dssp             CTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB
T ss_pred             ccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccc
Confidence            456777653222          12345555  788899999999999999999999999999999999          88


Q ss_pred             hHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCcc---ccc-----cccC-----------Ccc-ccHHHHHHHH--
Q 028239           92 SYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRG---YLA-----DHVG-----------SNV-ITTAQGEELR--  147 (211)
Q Consensus        92 s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~---~~~-----~~~~-----------~~~-~~~~~~~~~~--  147 (211)
                      +|.++ ..|+..+...  .+++|++||+||+|+...+.   ...     ++..           ... .+.+++..++  
T Consensus       265 s~~e~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~  343 (402)
T 1azs_C          265 RLQEA-LNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD  343 (402)
T ss_dssp             HHHHH-HHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHH
T ss_pred             hHHHH-HHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHH
Confidence            99998 7777777654  36899999999999865432   100     0000           000 1245555553  


Q ss_pred             ---HHh-------CCceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          148 ---KQI-------GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       148 ---~~~-------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                         +..       ..+.+++|||+++.||.++|.++.+.+....
T Consensus       344 kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          344 EFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             HHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence               221       2346789999999999999999988886543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=2.3e-18  Score=148.10  Aligned_cols=173  Identities=10%  Similarity=0.106  Sum_probs=108.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcee--------eeeeEEEEE--------------------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVF--------DNFSANVAV--------------------------   49 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~~~t~~--------~~~~~~~~~--------------------------   49 (211)
                      ..++|+|+|.+|+|||||+|+|++..+.. ...+++.        .....+..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999876322 2222220        000001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCCcC---ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 028239           50 --------------------DGSI--VNLGLWDTAGQED---YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPEL  104 (211)
Q Consensus        50 --------------------~~~~--~~l~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  104 (211)
                                          +...  ..+.||||||...   ....+..+++.+|++++|+|++++.+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                0000  2477999999644   233455678899999999999998888776 6665555


Q ss_pred             hhhCCCCcEEEEeeCCCcccCccccccccCCccc--cHHHHHH-----HHHHhC-------CceEEEecCC---------
Q 028239          105 RRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVI--TTAQGEE-----LRKQIG-------AAAYIECSSK---------  161 (211)
Q Consensus       105 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~sa~---------  161 (211)
                      ...  +.|+++|+||+|+......  ........  .......     +....+       ..+++++||+         
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            433  6789999999998654310  00000000  0001111     111111       1368999999         


Q ss_pred             -----CCCCHHHHHHHHHHHHcCCch
Q 028239          162 -----TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 -----~~~~v~~lf~~l~~~~~~~~~  182 (211)
                           ++.|++++++.+.+.+.....
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~~~~~  328 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLTRERA  328 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred             chhhhhccCHHHHHHHHHHHHHHhHH
Confidence                 999999999999998865443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=1.5e-17  Score=143.11  Aligned_cols=116  Identities=15%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC--CC------CC-----C------CCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN--KF------PT-----D------YIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~--~~------~~-----~------~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      .+..+|+|+|++|+|||||+++|+..  .+      .+     +      ....+.......+...+  +.++||||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence            46789999999999999999999842  11      00     0      00011111112333444  67889999999


Q ss_pred             cCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           65 EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      .+|...+..+++.+|++|+|+|+++..+.+.. ..|.. +...  +.|+++|+||+|+...
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence            99998888899999999999999998888776 55554 3333  8999999999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=6.4e-18  Score=130.24  Aligned_cols=119  Identities=13%  Similarity=0.136  Sum_probs=82.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccc---------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPL---------   73 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~---------   73 (211)
                      ..++|+++|.+|+|||||+++|++..+.  ..+.++........+..++  +.+.||||||...+......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            5799999999999999999999988752  3334443333333444455  56779999999776543321         


Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC-C--CcEEEEeeCCCcccCc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLREDR  126 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ivv~nK~Dl~~~~  126 (211)
                      ..+.+|++++|+|++.. ++......|+..+..... +  .|+++|+||+|+...+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            13479999999998653 343332466666665432 2  6999999999986543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=3.3e-17  Score=140.92  Aligned_cols=117  Identities=18%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEeCCC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS--NKFPT-----------DY------IPTVFDNFSANVAVDGSIVNLGLWDTAG   63 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~l~D~~G   63 (211)
                      ..+..+|+|+|++|+|||||+++|+.  +.+..           ++      ..++.......+..++  +.++||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            35678999999999999999999985  22210           00      0111111122344455  6678999999


Q ss_pred             CcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      +.+|...+..+++.+|++++|+|+++..+.+.. ..|.. +...  +.|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~~--~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATTY--GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHHc--CCCEEEEEECCCcccc
Confidence            999998888889999999999999998887775 55543 4443  7999999999998653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.75  E-value=1.7e-17  Score=134.49  Aligned_cols=159  Identities=17%  Similarity=0.144  Sum_probs=107.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc----ccccccc---ccCCc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY----SRLRPLS---YRGAD   79 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~~~~~---~~~~d   79 (211)
                      .|+|+|++|+|||||++++.+... ...+..++.......+..++ ...+.+||+||....    ..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            589999999999999999988642 12233333222223344443 234679999997432    2222222   35699


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .++.|+|++ ...+.++ ..|...+....   ...|.++|+||+|+... .           ...+..+..+..+. +++
T Consensus       238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi  302 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL  302 (416)
T ss_dssp             EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred             hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence            999999998 5556665 56655555543   36899999999998653 1           22333444444455 899


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCCch
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      .+||++++|++++++++.+.+.+...
T Consensus       303 ~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          303 PVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEECCCccCHHHHHHHHHHHHHhccc
Confidence            99999999999999999999976543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=8.9e-17  Score=138.43  Aligned_cols=118  Identities=14%  Similarity=0.118  Sum_probs=83.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCC-----------C------CCceeeeeeEEEEEC-----CeEEEEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD-----------Y------IPTVFDNFSANVAVD-----GSIVNLGLW   59 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~-----------~------~~t~~~~~~~~~~~~-----~~~~~l~l~   59 (211)
                      .+..+|+|+|+.++|||||+++|+...  +...           +      .+.+.......+.++     +..+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            456899999999999999999997531  1110           0      000000001122222     344788999


Q ss_pred             eCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           60 DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ||||+.+|...+...++.+|++|+|+|+++....+.. ..|. .....  ++|+++|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~~--~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANKY--KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEeCCCcccc
Confidence            9999999998888899999999999999988766664 4443 33333  7999999999998653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=1.4e-17  Score=134.93  Aligned_cols=160  Identities=13%  Similarity=0.114  Sum_probs=84.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCC-------CCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccc------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDY-------IPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSR------   69 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------   69 (211)
                      -.++|+|+|++|+|||||+++|++..++ ..+       .++.. ......+...+....+++||++|...+..      
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4578999999999999999999987653 211       11111 11111222234446788999999765311      


Q ss_pred             -------------------cccccccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239           70 -------------------LRPLSYRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL  129 (211)
Q Consensus        70 -------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  129 (211)
                                         +...++.++++.+++|..... .++......|+..+.   .+.|+|+|+||+|+...+.  
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--  184 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--  184 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH--
Confidence                               122345666665666665443 344444235666554   3799999999999876443  


Q ss_pred             ccccCCccccH--HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          130 ADHVGSNVITT--AQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       130 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                              +..  .++.+++...+. +++++|++++.++.++|..+...+.
T Consensus       185 --------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          185 --------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             --------HHHHHHHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred             --------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence                    443  667778888887 8999999999999999988877653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.71  E-value=3.3e-18  Score=134.53  Aligned_cols=113  Identities=15%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCCcC-------------ccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeC
Q 028239           54 VNLGLWDTAGQED-------------YSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTK  119 (211)
Q Consensus        54 ~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK  119 (211)
                      ..+.||||||...             +...+..+++.+|++++|+|..+.. ...+. ..+...+..  .+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence            4578999999754             2234455778999999999974332 11111 233344433  37899999999


Q ss_pred             CCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC---C---CCCHHHHHHHHHHHHcCC
Q 028239          120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK---T---QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~v~~lf~~l~~~~~~~  180 (211)
                      +|+.....          ...+.........+ ..|+++++.   +   +.|+.++++.+.+.+...
T Consensus       208 ~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          208 LDLMDKGT----------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TTSSCSSC----------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCcch----------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99876432          11122111000111 256665554   4   789999999998888654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=1.9e-17  Score=133.72  Aligned_cols=84  Identities=18%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEE---------------------EECC-eEEEEEEEeCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANV---------------------AVDG-SIVNLGLWDTAG   63 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~---------------------~~~~-~~~~l~l~D~~G   63 (211)
                      ++|+++|.+|+|||||+|+|++... ...++.++........                     .+++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998762 2344444422222211                     1232 247799999999


Q ss_pred             CcC----cccccc---ccccCCcEEEEEEECCCh
Q 028239           64 QED----YSRLRP---LSYRGADIFVLAFSLISR   90 (211)
Q Consensus        64 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   90 (211)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            754    222322   357899999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.71  E-value=6.9e-18  Score=135.15  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-e--e------------e---------------------------
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-D--N------------F---------------------------   43 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~--~------------~---------------------------   43 (211)
                      ..+|+|+|++|+|||||+++|.+..+.+...++.. .  .            +                           
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            35999999999999999999999875332222110 0  0            0                           


Q ss_pred             -----------eEEEEE-CCeEEEEEEEeCCCCcCc-------------cccccccccCCcEEEEEEECCChhhHHHHHH
Q 028239           44 -----------SANVAV-DGSIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISRASYENVLK   98 (211)
Q Consensus        44 -----------~~~~~~-~~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~   98 (211)
                                 ...+.+ ......+.+|||||...+             ......+++.+|++|+|+|..+.+...   .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~  190 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S  190 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence                       000000 011134789999998776             334556789999999999876543322   2


Q ss_pred             HHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHH
Q 028239           99 KWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA  173 (211)
Q Consensus        99 ~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l  173 (211)
                      .|...+.... .+.|+++|+||+|+.....          ...+....+....+. +|+++++..+.++++.+...
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence            2333333333 3789999999999976543          333333333344454 89999999988877665543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.68  E-value=1.4e-16  Score=118.99  Aligned_cols=156  Identities=18%  Similarity=0.080  Sum_probs=95.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-------------eEEEEECC------------------eE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-------------SANVAVDG------------------SI   53 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~   53 (211)
                      +..+|+++|.+|+|||||+++|...........+.....             .....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999986521111000000000             00011111                  12


Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.+|||+|+......   +....+.+++|+|+++.....   ..+...+     +.|+++|+||+|+.....      
T Consensus       109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~------  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVG------  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred             CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchh------
Confidence            45679999995211111   112568899999987764321   1121221     578899999999865321      


Q ss_pred             CCccccHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHHHHcCCc
Q 028239          134 GSNVITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~~~~  181 (211)
                          ...++..+.++..+ ..+++++||++|.|++++|+++.+.+....
T Consensus       172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence                34555556665554 248999999999999999999999886543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=6e-15  Score=117.20  Aligned_cols=83  Identities=19%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCcc--
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYS--   68 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~--   68 (211)
                      ++|+++|.+|+|||||+++|.+..+ ...++.++.......+.+++.               ...+++||+||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            7899999999999999999998763 334444443323334444442               1468899999988753  


Q ss_pred             --ccccc---cccCCcEEEEEEECCC
Q 028239           69 --RLRPL---SYRGADIFVLAFSLIS   89 (211)
Q Consensus        69 --~~~~~---~~~~~d~~i~v~d~~~   89 (211)
                        .+...   .++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence              23333   3689999999999975

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.65  E-value=2.4e-17  Score=123.54  Aligned_cols=153  Identities=18%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-------------EEEEEC-CeE-----------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------------ANVAVD-GSI-----------------   53 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~-----------------   53 (211)
                      +.++|+|+|.+|+|||||+++|....+...+.++....+.             ..+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987655444444432221             222221 111                 


Q ss_pred             --EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccc
Q 028239           54 --VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLAD  131 (211)
Q Consensus        54 --~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  131 (211)
                        ..+.++|++|.-...   ..+-...+..+.+.|..........   +...+     ..|.++|+||+|+.....    
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-----~~~~iiv~NK~Dl~~~~~----  181 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGIM-----KTADLIVINKIDLADAVG----  181 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhHh-----hcCCEEEEeccccCchhH----
Confidence              134466666631111   0111233455677775332221110   01111     578899999999875432    


Q ss_pred             ccCCccccHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          132 HVGSNVITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                            ...++..++++..+ ..+++++||++|.|++++|+++.+.+.
T Consensus       182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence                  45566666766653 348999999999999999999988764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.64  E-value=4.6e-15  Score=124.41  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--C---------------CCCCCCce---eeee---eEEEEECCeEEEEEEEeC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--F---------------PTDYIPTV---FDNF---SANVAVDGSIVNLGLWDT   61 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~---------------~~~~~~t~---~~~~---~~~~~~~~~~~~l~l~D~   61 (211)
                      +.=+|+|+|+.++|||||..+|+...  +               ..++.+..   +...   ...+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            34589999999999999999996211  0               00111111   1111   22344555  66789999


Q ss_pred             CCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           62 AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ||+.+|.......++-+|++|+|+|+...-.-+.. ..|. .....  ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~-~a~~~--~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMD-VCRMR--ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHH-HHHHh--CCceEEEEecccchh
Confidence            99999999999999999999999999998777765 5554 34444  899999999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.63  E-value=3.4e-16  Score=125.02  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.||||||...   ........+|++++|+|....+..+.+ .       ......|+++|+||+|+.....      
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------  234 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------  234 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence            5677999999432   222345889999999998776655433 1       1112468999999999865321      


Q ss_pred             CCccccHHHHHHHHHH---hC------CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          134 GSNVITTAQGEELRKQ---IG------AAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~------~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                          . .....++...   .+      ..+++.+||++|.|+++++++|.+.+..
T Consensus       235 ----~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 ----A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ----H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                1 1111222222   21      2489999999999999999999988754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.62  E-value=6.8e-17  Score=129.03  Aligned_cols=158  Identities=20%  Similarity=0.183  Sum_probs=92.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC------Ccee--------------------eee---------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVF--------------------DNF---------------   43 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~------~t~~--------------------~~~---------------   43 (211)
                      ..++|+|+|.+++|||||+++|++..+.+...      ++..                    ..+               
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987642211      1100                    000               


Q ss_pred             ---------eEEEEEC-CeEEEEEEEeCCCCcC-------------ccccccccccCCc-EEEEEEECCChhhHHHHHHH
Q 028239           44 ---------SANVAVD-GSIVNLGLWDTAGQED-------------YSRLRPLSYRGAD-IFVLAFSLISRASYENVLKK   99 (211)
Q Consensus        44 ---------~~~~~~~-~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~   99 (211)
                               ...+.+. .....+.||||||...             +..+...++..++ ++++|.|++....-.+. ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                     0001111 0124578999999643             2234444555555 55556666543222222 23


Q ss_pred             HHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHH--HHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239          100 WMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGE--ELRKQIGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       100 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +...+..  .+.|+++|+||+|+.+...          .......  .+....+..+++.+||+++.|++++++.+.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            4444433  3789999999999976432          0111111  0011123346788999999999999998876

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.62  E-value=7.4e-16  Score=135.09  Aligned_cols=118  Identities=16%  Similarity=0.160  Sum_probs=86.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------C---------C-Cceeee-eeEEEE------------ECC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------Y---------I-PTVFDN-FSANVA------------VDG   51 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~------~---------~-~t~~~~-~~~~~~------------~~~   51 (211)
                      ..+..+|+|+|++++|||||+++|+...  +...      .         . .|.... ....+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3456799999999999999999998641  1110      0         0 011100 111121            234


Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ..+.++||||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.....   .++|+++|+||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence            578899999999999999999999999999999999999888886 55654433   2789999999999863

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.60  E-value=9.6e-16  Score=128.64  Aligned_cols=118  Identities=16%  Similarity=0.141  Sum_probs=77.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeee-eE----EEEECCe-----------------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP----TDYIPTVFDNF-SA----NVAVDGS-----------------------   52 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~-~~----~~~~~~~-----------------------   52 (211)
                      ..++|+|+|.+|+|||||+|+|++..+.    .....|..... ..    .+..+..                       
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            5689999999999999999999998763    22222211000 00    0000000                       


Q ss_pred             E---------EEEEEEeCCCCcC-----------ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc
Q 028239           53 I---------VNLGLWDTAGQED-----------YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP  112 (211)
Q Consensus        53 ~---------~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  112 (211)
                      .         ..+.||||||...           +...+..++..+|++++|+|+++....... ..|+..+...  +.|
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~p  220 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDK  220 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGG
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCC
Confidence            0         2477999999764           223444567889999999999885444444 5566655543  689


Q ss_pred             EEEEeeCCCcccC
Q 028239          113 IVLVGTKLDLRED  125 (211)
Q Consensus       113 ~ivv~nK~Dl~~~  125 (211)
                      +++|+||+|+...
T Consensus       221 vilVlNK~Dl~~~  233 (550)
T 2qpt_A          221 IRVVLNKADMVET  233 (550)
T ss_dssp             EEEEEECGGGSCH
T ss_pred             EEEEEECCCccCH
Confidence            9999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.56  E-value=7e-14  Score=111.63  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=55.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECC-------------------eEEEEEEEeCCCCcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDG-------------------SIVNLGLWDTAGQED   66 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~l~D~~G~~~   66 (211)
                      ++|+++|.+|+|||||+++|.+.. ....++.++.........+.+                   ....+++||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            689999999999999999998764 223333332211111222221                   235688999999876


Q ss_pred             ccc----ccc---ccccCCcEEEEEEECCC
Q 028239           67 YSR----LRP---LSYRGADIFVLAFSLIS   89 (211)
Q Consensus        67 ~~~----~~~---~~~~~~d~~i~v~d~~~   89 (211)
                      +.+    +..   ..++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            542    222   23689999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.55  E-value=2.7e-15  Score=119.45  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.++||||....   .......+|.+++|+|++.+...+.+ ..   .+    -..|.++|+||+|+.....      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence            45679999995321   23346789999999999876543322 11   11    1457899999999864211      


Q ss_pred             CCccccHHHHHHHHHH---------hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          134 GSNVITTAQGEELRKQ---------IGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~---------~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                          . ......+...         ....+++.+||++|.|+++++++|.+.+.
T Consensus       230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                0 1111222211         11237899999999999999999988763

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=2.7e-13  Score=117.20  Aligned_cols=114  Identities=16%  Similarity=0.074  Sum_probs=79.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CCCceeeeee---------EEEEEC-----CeEEEEEEEeCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN--------KFPTD--YIPTVFDNFS---------ANVAVD-----GSIVNLGLWDTA   62 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~--------~~~~~--~~~t~~~~~~---------~~~~~~-----~~~~~l~l~D~~   62 (211)
                      =+|+|+|+.++|||||..+|+..        .....  +..+...+..         ..+.+.     ...+.++|+|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            48999999999999999999731        11111  1111111111         122222     135889999999


Q ss_pred             CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ||.+|.......++-+|++|+|+|+...-..+.. ..|......   ++|.++++||+|...
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence            9999999999999999999999999988777765 555544433   799999999999743

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.51  E-value=2.2e-14  Score=109.76  Aligned_cols=118  Identities=12%  Similarity=-0.002  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCCcCcccccc------ccccCCcEEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCcEEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSRLRP------LSYRGADIFVLAFSLISRASYENVLKKW---MPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +.+.||||||.........      ..+.. +++++++|.....+..+....+   ......  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            4677999999865433221      13455 8888898875443333221111   111112  2789999999999865


Q ss_pred             CccccccccCCccc-cHHH-HHH-----------------HHHHhCC-ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          125 DRGYLADHVGSNVI-TTAQ-GEE-----------------LRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       125 ~~~~~~~~~~~~~~-~~~~-~~~-----------------~~~~~~~-~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ....  .... ..+ .... ...                 +++.++. .+++++||+++.|++++++++.+.+
T Consensus       186 ~~~~--~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          186 EEEK--ERHR-KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHHH--HHHH-HHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccH--HHHH-HHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            4210  0000 000 0000 000                 1234443 3799999999999999999998876

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.50  E-value=5.6e-15  Score=117.34  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.||||||......   .....+|++++|+|.+..+.++.+ ..  ..     .+.|.++|+||+|+.....      
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~--~~-----~~~p~ivv~NK~Dl~~~~~------  211 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK--GL-----MEVADLIVINKDDGDNHTN------  211 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH--HH-----HHHCSEEEECCCCTTCHHH------
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH--hh-----hcccCEEEEECCCCCChHH------
Confidence            5677999999654332   246899999999998765443222 11  01     1467899999999865321      


Q ss_pred             CCccccH--HHHHHHHHHhC------CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          134 GSNVITT--AQGEELRKQIG------AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~~------~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                          +..  .+........+      ..+++++||++|.|++++++.|.+.+.
T Consensus       212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                111  12222222222      247899999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.50  E-value=1.1e-14  Score=124.27  Aligned_cols=170  Identities=13%  Similarity=0.092  Sum_probs=108.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc--CCC------CCC-----CCCce---eeee-e--EEEEECCeEEEEEEEeCCCCcCc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS--NKF------PTD-----YIPTV---FDNF-S--ANVAVDGSIVNLGLWDTAGQEDY   67 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~--~~~------~~~-----~~~t~---~~~~-~--~~~~~~~~~~~l~l~D~~G~~~~   67 (211)
                      -+|+|+|+.++|||||..+|+.  +.+      ...     +.+..   +.+. .  ..+.+++  +.++|+|||||.+|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence            4799999999999999999973  111      111     01000   1111 1  1223344  66789999999999


Q ss_pred             cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc-----c-----------
Q 028239           68 SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA-----D-----------  131 (211)
Q Consensus        68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~-----------  131 (211)
                      .......++-+|++++|+|+...-.-+.. ..|.. ....  ++|.++++||+|....+-...     .           
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~-a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~  156 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHA-LRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK  156 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHH-HHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHH-HHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence            99999999999999999999988666654 44543 4444  789999999999754321100     0           


Q ss_pred             -----ccC-CccccHHH-----------------------------HHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          132 -----HVG-SNVITTAQ-----------------------------GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       132 -----~~~-~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                           ... ......+.                             ...........|.+..||.++.|++.+++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~  236 (638)
T 3j25_A          157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK  236 (638)
T ss_dssp             CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred             eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence                 000 00000000                             0001112234588899999999999999999998


Q ss_pred             HcCCch
Q 028239          177 VLQPPR  182 (211)
Q Consensus       177 ~~~~~~  182 (211)
                      +..+..
T Consensus       237 ~p~p~~  242 (638)
T 3j25_A          237 FYSSTH  242 (638)
T ss_dssp             CCCSGG
T ss_pred             ccCccc
Confidence            766543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=6e-13  Score=106.27  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=94.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-------ccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-------RPLSY   75 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~~~~~   75 (211)
                      +...+|+++|.|++|||||+|+|.+.. ....++.|+.+.....+.+++.  .++++|+||-....+.       .-..+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            345689999999999999999999865 4567888888888888889885  4669999996432211       11235


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      +.+|++++|+|++++..-.   ..+...+....   .+.|.+++.||.|...-..  .........+.++...+...+..
T Consensus       148 ~~ad~il~vvD~~~p~~~~---~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHK---QIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHH---HHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC
T ss_pred             HhcCccccccccCccHHHH---HHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc
Confidence            7899999999999874322   22233333322   4678889999999643211  11111223556666666666544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.47  E-value=2.6e-13  Score=105.95  Aligned_cols=98  Identities=16%  Similarity=0.147  Sum_probs=79.7

Q ss_pred             CcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc-HH
Q 028239           64 QEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT-TA  141 (211)
Q Consensus        64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~  141 (211)
                      ++++..+...+++++|++++|+|+++++ ++..+ ..|+..+...  ++|+++|+||+|+.+...          +. .+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~  132 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE  132 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence            6788888888999999999999999986 88877 8888777653  899999999999975431          22 34


Q ss_pred             HHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239          142 QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       142 ~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +..++.+..+. +++++||++|.|++++|+.+..
T Consensus       133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred             HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence            55666677776 9999999999999999977643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.47  E-value=3.9e-14  Score=121.82  Aligned_cols=157  Identities=18%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceee------------------------------------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFD------------------------------------------   41 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~------------------------------------------   41 (211)
                      ...+|+|+|.+++|||||+|+|++..+ +.....++..                                          
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            346999999999999999999999875 2221111100                                          


Q ss_pred             ---------eeeEEEEECCeEEEEEEEeCCCCcCcc-------------ccccccc-cCCcEEEEEEECCChhhHHHHHH
Q 028239           42 ---------NFSANVAVDGSIVNLGLWDTAGQEDYS-------------RLRPLSY-RGADIFVLAFSLISRASYENVLK   98 (211)
Q Consensus        42 ---------~~~~~~~~~~~~~~l~l~D~~G~~~~~-------------~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~   98 (211)
                               .....+...+ ...+.|+||||-....             .+...++ ..+|++++|+|++....-.+. .
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l  207 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  207 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence                     0000111111 1246799999954311             1122233 578999999999875443332 2


Q ss_pred             HHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH--HHHHhCCceEEEecCCCCCCHHHHHHHHHH
Q 028239           99 KWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE--LRKQIGAAAYIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus        99 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      .+...+...  +.|+++|+||+|+.....          ........  +....+..+++.+||++|.|++++++.+.+
T Consensus       208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          208 KIAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            444555543  789999999999976432          11111100  000113346778999999999999999886

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.34  E-value=1.3e-12  Score=103.39  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=63.0

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.|+||||...-.   ......+|.+++|+|....+..+.+ ...   +.    ..+.++++||+|+.....      
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~------  210 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGER------  210 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHH------
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchh------
Confidence            456799999964321   1235689999999998655432221 111   11    235577789999754221      


Q ss_pred             CCccccHHHHHHHHHHh---C------CceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          134 GSNVITTAQGEELRKQI---G------AAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                          ......+.+....   .      ..+++.+||+++.|++++++.|.+...
T Consensus       211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                2223333333321   1      237889999999999999999988763

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.27  E-value=3.6e-12  Score=92.88  Aligned_cols=104  Identities=7%  Similarity=-0.070  Sum_probs=69.1

Q ss_pred             CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHH---HHHHhhh--CCCCcEEEEeeCC-CcccCccccccccCCc
Q 028239           63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKW---MPELRRF--APNVPIVLVGTKL-DLREDRGYLADHVGSN  136 (211)
Q Consensus        63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~  136 (211)
                      |++.++.+|..|+.++|++|||+|.+|.+.++ ....+   ...+.+.  ..+.|++|++||. |++..           
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-----------  178 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-----------  178 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-----------
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-----------
Confidence            78999999999999999999999999875433 22333   3334332  2588999999995 67543           


Q ss_pred             cccHHHHHHHHHH---hCCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          137 VITTAQGEELRKQ---IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       137 ~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                       .+..++.+....   .+.-.+..|||.+|+|+.+-++||.+.+..
T Consensus       179 -ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          179 -MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             -CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             -CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence             444444332211   122368889999999999999999877744

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.25  E-value=3.6e-12  Score=102.26  Aligned_cols=88  Identities=17%  Similarity=0.094  Sum_probs=50.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCcc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYS   68 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~   68 (211)
                      ..++|+++|.+|+|||||+++|.+..+. ..++.++.......+.+++.               ...+++||+||...+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4579999999999999999999987642 23333333333344444432               2358899999987655


Q ss_pred             c-------cccccccCCcEEEEEEECCChhh
Q 028239           69 R-------LRPLSYRGADIFVLAFSLISRAS   92 (211)
Q Consensus        69 ~-------~~~~~~~~~d~~i~v~d~~~~~s   92 (211)
                      +       .+...++.+|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            4       23345789999999999876444

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.17  E-value=5.9e-10  Score=89.58  Aligned_cols=85  Identities=24%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDY   67 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~   67 (211)
                      ...+|+++|++|+|||||+|.|.+...  ...++.++.......+.+++.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999999653  344555554555555666541               135779999996443


Q ss_pred             cc-------cccccccCCcEEEEEEECCC
Q 028239           68 SR-------LRPLSYRGADIFVLAFSLIS   89 (211)
Q Consensus        68 ~~-------~~~~~~~~~d~~i~v~d~~~   89 (211)
                      .+       .+...++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22       22224588999999999853

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.15  E-value=5.5e-11  Score=90.71  Aligned_cols=107  Identities=7%  Similarity=-0.070  Sum_probs=74.5

Q ss_pred             CCCCcCccccccccccCCcEEEEEEECCChhhHH---HHHHHHHHHHhhh--CCCCcEEEEeeC-CCcccCccccccccC
Q 028239           61 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYE---NVLKKWMPELRRF--APNVPIVLVGTK-LDLREDRGYLADHVG  134 (211)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~--~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  134 (211)
                      .+||+.++..|..++.++|++|||+|.+|.+.++   ++ ..+...+.+.  ..+.|++|++|| .|++..         
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---------  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence            3578999999999999999999999999886543   22 2233444332  368999999996 588653         


Q ss_pred             CccccHHHHHHHHHH---hCCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          135 SNVITTAQGEELRKQ---IGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                         .+..++.+....   .+.-.+..|||.+|+|+.+-++||.+.+...
T Consensus       264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence               444443332211   1223678899999999999999999887543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=5e-10  Score=89.63  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239           63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ  142 (211)
Q Consensus        63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (211)
                      ..++|++.+..+.+.++++++|+|+++++      ..|...+.+...+.|+++|+||+|+....           ...++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence            45778888888889999999999999864      45555666656689999999999997543           23333


Q ss_pred             HHH----HHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          143 GEE----LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       143 ~~~----~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ..+    +++..+.  .+++++||++|.|++++++.+.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            333    3555554  2789999999999999999997754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.86  E-value=1.6e-09  Score=86.78  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=72.4

Q ss_pred             CCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239           63 GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ  142 (211)
Q Consensus        63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (211)
                      .+++|++....+++.++++++|+|++++++      .|...+.+...+.|+++|+||+|+....           ...+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~  119 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK  119 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence            478888888888889999999999999874      2333344445588999999999997643           22333


Q ss_pred             HHH----HHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          143 GEE----LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       143 ~~~----~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ..+    +++..+.  .+++.+||++|.|++++++.+.+..
T Consensus       120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            333    3455554  3689999999999999999997765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.86  E-value=5.8e-08  Score=78.62  Aligned_cols=115  Identities=16%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----CceeeeeeEEEEECCeEEEEEEEeCCCCcCccc-----------
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR-----------   69 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------   69 (211)
                      .++++|+|++|+|||||++.|.+..+.+...     ..............+....+.++|++|-.....           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            3679999999999999999999875432211     111111112222223334678999998532200           


Q ss_pred             ---c-----------cc--ccccCC--c-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           70 ---L-----------RP--LSYRGA--D-IFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        70 ---~-----------~~--~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                         .           ..  .....+  | +++++.|...+.+-.++  .++..+.   .+.|+|+|.||+|....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence               0           00  011223  3 35556666544444443  3333333   48999999999997543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.79  E-value=4.1e-10  Score=90.22  Aligned_cols=139  Identities=12%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC-----C-C-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc----ccc--
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN-----K-F-PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL----RPL--   73 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~-----~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~----~~~--   73 (211)
                      .+|+++|.+|+|||||+|+|++.     . . ....++++...  ..+.++..   +.++||||-......    ...  
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999976     1 1 22233333222  12333322   569999996432211    111  


Q ss_pred             --cc--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           74 --SY--RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        74 --~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                        .+  ...+.++++++......+..+ .. ++.+..  .+.|+++++||.|..+...           .......+.+.
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~  302 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYANQ  302 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHH
T ss_pred             HHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHHh
Confidence              11  678899999987432111121 11 111222  3789999999999876432           22333445566


Q ss_pred             hCCceEEEecCCCCCCH
Q 028239          150 IGAAAYIECSSKTQQNV  166 (211)
Q Consensus       150 ~~~~~~~~~sa~~~~~v  166 (211)
                      .+. .+...++.+..++
T Consensus       303 ~g~-~l~p~~~~~~~~~  318 (369)
T 3ec1_A          303 LGE-LLSPPSKRYAAEF  318 (369)
T ss_dssp             BTT-TBCSSCGGGTTTC
T ss_pred             cCC-ccCCCCchhhhhc
Confidence            664 5555555544433

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.78  E-value=4.9e-08  Score=74.84  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=62.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccc---c--
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTD---------YIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSR---L--   70 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~---------~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~--   70 (211)
                      .++++++|+.|+|||||++.+++...+..         ...+.. ..........+....+.++|++|-.....   .  
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            58999999999999999999987432211         001100 00111111122223577999998321100   0  


Q ss_pred             -----------------------ccccccCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           71 -----------------------RPLSYRGADIFVLAFSLI-SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        71 -----------------------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                                             ....+..+++.++++|.. .+-+-.+  ..++..+..   ..++|+|.+|.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence                                   011233468888888854 3333333  233444443   3899999999997543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.77  E-value=6.4e-09  Score=86.14  Aligned_cols=150  Identities=16%  Similarity=0.085  Sum_probs=84.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCcee-----------eeeeEE----------------
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYT------SNKF----PTDYIPTVF-----------DNFSAN----------------   46 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~------~~~~----~~~~~~t~~-----------~~~~~~----------------   46 (211)
                      .+...|+++|.+|+||||+++.|.      +.+.    .+.+.+...           ..+...                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      3321    111111100           000000                


Q ss_pred             EEECCeEEEEEEEeCCCCcCccc-cccc---c--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeC
Q 028239           47 VAVDGSIVNLGLWDTAGQEDYSR-LRPL---S--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTK  119 (211)
Q Consensus        47 ~~~~~~~~~l~l~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK  119 (211)
                      ....+  +.+.|+||||...... .+..   .  +..+|.+++|+|+........    ....+...   .|+ ++|+||
T Consensus       179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~~---~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKDK---VDVASVIVTK  249 (504)
T ss_dssp             HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHHH---HCCCCEEEEC
T ss_pred             HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHhh---cCceEEEEeC
Confidence            00022  5577999999754321 1111   1  227899999999987644222    22333332   564 899999


Q ss_pred             CCcccCccccccccCCccccHHHHHHHHHHhCC-----------------ceEEEecCCCCCC-HHHHHHHHHHH
Q 028239          120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGA-----------------AAYIECSSKTQQN-VKAVFDTAIKV  176 (211)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~sa~~~~~-v~~lf~~l~~~  176 (211)
                      .|......          .    +.......+.                 .+.+.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g----------~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGG----------G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCT----------H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchH----------H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99864321          1    1122223332                 1224479999999 99999888765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.71  E-value=1.2e-08  Score=78.67  Aligned_cols=100  Identities=16%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             EEeCCCCcC-ccccccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccC
Q 028239           58 LWDTAGQED-YSRLRPLSYRGADIFVLAFSLISRASYEN--VLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVG  134 (211)
Q Consensus        58 l~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  134 (211)
                      +-..|||.. ........+..+|+++.|+|+.++.+...  + ..|       ..+.|.++|+||+|+.+..        
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~-------l~~kp~ilVlNK~DL~~~~--------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDI-------LKNKPRIMLLNKADKADAA--------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHH-------CSSSCEEEEEECGGGSCHH--------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHH-------HCCCCEEEEEECcccCCHH--------
Confidence            456888753 33344556889999999999999877653  2 333       2479999999999997531        


Q ss_pred             CccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          135 SNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                          ..+...++.+..+. +++.+||+++.|++++++.+.+.+.
T Consensus        67 ----~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           67 ----VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ----HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence                11222333344455 8999999999999999998877664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.66  E-value=9e-10  Score=88.15  Aligned_cols=111  Identities=12%  Similarity=0.096  Sum_probs=63.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--------CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc----cc-
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFP--------TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR----PL-   73 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~----~~-   73 (211)
                      .+|+++|.+|+|||||+|+|++....        ...++++..  ...+.+++.   +.++||||-.....+.    .. 
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999985311        122222211  122333332   6699999964332111    11 


Q ss_pred             -----cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           74 -----SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        74 -----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                           .....+.++++++.........+ . .++.+..  .+.|+++++||.|..+..
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcce-E-EEEEecC--CCceEEEEecCccccccc
Confidence                 13567888888886332111121 0 0111222  378999999999987653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.66  E-value=3.9e-07  Score=73.69  Aligned_cols=170  Identities=12%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeee--eEEEEECCeEEEEEEEeCCCCcCcccc-----ccccccC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNF--SANVAVDGSIVNLGLWDTAGQEDYSRL-----RPLSYRG   77 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~l~l~D~~G~~~~~~~-----~~~~~~~   77 (211)
                      ...++|+|++|+|||||+|.+.+-..+..- ....+...  ...+.-....-.+.+||++|-......     ....+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            357999999999999999999984322110 00001000  011111111113679999985321111     1112334


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccc-cccCCccccHHHHHHHH----HHhC-
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLA-DHVGSNVITTAQGEELR----KQIG-  151 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~-  151 (211)
                      .+.+++ ++..... -+.  ..+...+...  +.|+++|.||.|+.--.+++. .....+....+...++.    .+.+ 
T Consensus       149 ~~~~~~-lS~G~~~-kqr--v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFK-KND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCC-HHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCcc-HHH--HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455554 6765211 112  2233333333  789999999999642111110 00000111122233333    1222 


Q ss_pred             -CceEEEecC--CCCCCHHHHHHHHHHHHcCCc
Q 028239          152 -AAAYIECSS--KTQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       152 -~~~~~~~sa--~~~~~v~~lf~~l~~~~~~~~  181 (211)
                       ....+.+|+  .++.|++++.+.+.+.+.+.+
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             235788999  566679999999998886544

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.53  E-value=8.8e-08  Score=73.87  Aligned_cols=57  Identities=23%  Similarity=0.271  Sum_probs=35.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQE   65 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~   65 (211)
                      ...++|+++|.||+|||||+|+|.+....  ...++++...  ..+..+.   .+.+|||||-.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence            35689999999999999999999987632  2222222221  1223332   36699999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.48  E-value=6.9e-08  Score=73.68  Aligned_cols=56  Identities=13%  Similarity=0.074  Sum_probs=34.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+. ...+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5999999999999999999998764321 11112111 12222332   367999999754

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.35  E-value=4e-07  Score=76.72  Aligned_cols=63  Identities=21%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEE----E-CCeEEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA----V-DGSIVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~l~l~D~~G~~~   66 (211)
                      ...++|+|+|.+|+|||||+|+|++....-...++....+.....    . ......+.|+||||-..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            356899999999999999999999876321333333222221111    1 11123466999999654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.24  E-value=4.1e-06  Score=68.17  Aligned_cols=135  Identities=16%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCCce-------eeeeeE-EEEE---CC------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS------NKF----PTDYIPTV-------FDNFSA-NVAV---DG------------   51 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~------~~~----~~~~~~t~-------~~~~~~-~~~~---~~------------   51 (211)
                      ++.-|+++|++|+||||++..|..      .+.    .+.+.+..       ...... .+..   .+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            357899999999999999988763      110    11111100       000000 0000   00            


Q ss_pred             --eEEEEEEEeCCCCcCcccc-cc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           52 --SIVNLGLWDTAGQEDYSRL-RP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        52 --~~~~l~l~D~~G~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                        ..+.+.|+||||....... ..     .....+|.+++|+|+.........    ...+.+.  -.+..||+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence              1155779999995432211 00     112357899999998876543332    2344433  24557899999986


Q ss_pred             cCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239          124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ...              ..+..+....+. |+..++.
T Consensus       253 ~~g--------------G~~ls~~~~~g~-PI~fig~  274 (443)
T 3dm5_A          253 AKG--------------GGALSAVAATGA-PIKFIGT  274 (443)
T ss_dssp             SSH--------------HHHHHHHHTTCC-CEEEEEC
T ss_pred             ccc--------------cHHHHHHHHHCC-CEEEEEc
Confidence            532              223444555665 7766665

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=4.8e-07  Score=68.96  Aligned_cols=94  Identities=13%  Similarity=0.068  Sum_probs=60.9

Q ss_pred             CCCCcC-ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCcccc
Q 028239           61 TAGQED-YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVIT  139 (211)
Q Consensus        61 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  139 (211)
                      .|||.. ........+.++|+++.|+|+.++.+....  .+    . .. +.|.++|+||+|+.+..           . 
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l----~-ll-~k~~iivlNK~DL~~~~-----------~-   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GV----D-FS-RKETIILLNKVDIADEK-----------T-   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TS----C-CT-TSEEEEEEECGGGSCHH-----------H-
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HH----H-hc-CCCcEEEEECccCCCHH-----------H-
Confidence            577643 223344567899999999999998776532  11    1 11 78999999999997632           1 


Q ss_pred             HHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHH
Q 028239          140 TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      .+...++.+..+. ++ .+||+++.|++++++.+...
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            1222334445565 67 99999999999998776543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.17  E-value=1.8e-06  Score=67.16  Aligned_cols=89  Identities=24%  Similarity=0.250  Sum_probs=59.4

Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccc--cHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVI--TTAQGEELR  147 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~  147 (211)
                      +....+.++|.+++|+|+.++..-......++......  ++|.++|+||+|+.+...          .  ......++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~y  146 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAEDY  146 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHHHH
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHHHH
Confidence            34446789999999999998764433435555444333  789999999999976421          0  012223333


Q ss_pred             HHhCCceEEEecCCCCCCHHHHHH
Q 028239          148 KQIGAAAYIECSSKTQQNVKAVFD  171 (211)
Q Consensus       148 ~~~~~~~~~~~sa~~~~~v~~lf~  171 (211)
                      +..+. +.+.+||.++.|+++++.
T Consensus       147 ~~~g~-~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          147 RNIGY-DVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             HHHTC-CEEECCHHHHTTCTTTGG
T ss_pred             HhCCC-eEEEEecCCCCCHHHHHh
Confidence            44566 889999998888776653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.14  E-value=8.3e-06  Score=66.46  Aligned_cols=64  Identities=19%  Similarity=0.138  Sum_probs=39.0

Q ss_pred             EEEEEEeCCCCcCccc-cc-----cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-c-EEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSR-LR-----PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNV-P-IVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~  124 (211)
                      +.+.|+||||...... ..     ...+..+|.+++|+|+.......    .....+..   .. | ..+|+||.|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFKE---AVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHHT---TSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHhh---cccCCeEEEEeCCCCcc
Confidence            4567999999654321 10     11233689999999987654221    22233332   34 5 789999999754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.89  E-value=8.3e-06  Score=69.38  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .|+|+|+.|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            59999999999999999999864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.86  E-value=5.2e-06  Score=67.52  Aligned_cols=90  Identities=13%  Similarity=0.065  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCCcC--ccc-cccc-----cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           54 VNLGLWDTAGQED--YSR-LRPL-----SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        54 ~~l~l~D~~G~~~--~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      +.+.|+||||...  .+. ....     .....+.+++|+|+.......+.    ...+.+.  -.+..||+||.|....
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence            4566999999543  111 1000     12256899999999876443332    2334433  2457899999997643


Q ss_pred             ccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCH
Q 028239          126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNV  166 (211)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v  166 (211)
                                    ...+.......+. |+..++.  |+++
T Consensus       254 --------------~G~als~~~~~g~-Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 --------------GGGALSAVVATGA-TIKFIGT--GEKI  277 (433)
T ss_dssp             --------------HHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred             --------------chHHHHHHHHHCC-CEEEEEC--CCCh
Confidence                          1234445556676 8777775  5544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.79  E-value=4.6e-07  Score=74.83  Aligned_cols=109  Identities=15%  Similarity=-0.041  Sum_probs=62.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCCcC--ccccc--------c
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGSIVNLGLWDTAGQED--YSRLR--------P   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~D~~G~~~--~~~~~--------~   72 (211)
                      ...+.|+++|.+|+||||+.++|...... ...++...... ......+......+||..|.+.  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999998754210 11111110000 0000011112235788888732  23333        3


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEe
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVG  117 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~  117 (211)
                      .++...++.++|+|.++. +.... ..|...+.+.  ..+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence            455567888999999987 45554 6777777665  44554444

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.78  E-value=9.9e-06  Score=62.81  Aligned_cols=91  Identities=14%  Similarity=0.073  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCCcC--ccc-ccc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQED--YSR-LRP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  124 (211)
                      +.+.|+||||...  ... ...     .....+|.+++|+|........    .....+..   ..| ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            4567999999765  211 111     1234789999999987543222    12233333   355 678899999753


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKA  168 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  168 (211)
                      .              ...+..+....+. |+..++  .|+++++
T Consensus       254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence            2              2234456666776 776665  4666654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.77  E-value=0.00017  Score=57.26  Aligned_cols=83  Identities=20%  Similarity=0.250  Sum_probs=54.5

Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH---HHh
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR---KQI  150 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  150 (211)
                      ...++|.+++|.+. ++.........++-.....  ++|.++|+||+|+.+..            ......++.   ...
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~------------~~~~~~~~~~~y~~~  191 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDE------------GMDFVNEQMDIYRNI  191 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHH------------HHHHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCch------------hHHHHHHHHHHHHhC
Confidence            36789999988665 4543333335555444334  78889999999997642            111122333   345


Q ss_pred             CCceEEEecCCCCCCHHHHHHH
Q 028239          151 GAAAYIECSSKTQQNVKAVFDT  172 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~  172 (211)
                      +. +.+.+||.++.|++++...
T Consensus       192 G~-~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          192 GY-RVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             TC-CEEECBTTTTBTHHHHHHH
T ss_pred             CC-cEEEEecCCCcCHHHHHHh
Confidence            65 8899999999999987654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.60  E-value=6.7e-05  Score=61.22  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +..=|.|+|++++|||+|+|+|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3456889999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.33  E-value=0.00012  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.29  E-value=0.00014  Score=53.08  Aligned_cols=28  Identities=32%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |.......|+|+|+.|||||||++.+.+
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            6556667899999999999999998866

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.23  E-value=0.00017  Score=51.46  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.17  E-value=0.00021  Score=51.86  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      -.++|+|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.15  E-value=0.00027  Score=51.30  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=20.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ....--|+|+|++|||||||++.|.+
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            33445799999999999999998865

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.14  E-value=0.00032  Score=50.17  Aligned_cols=28  Identities=21%  Similarity=0.120  Sum_probs=24.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |+......|+|.|.+||||||+.+.|..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            7777777899999999999999998864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.11  E-value=0.00036  Score=51.00  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      --|+|+|++|+|||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.10  E-value=0.00032  Score=50.84  Aligned_cols=30  Identities=23%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      |+-.....|+|+|++||||||+++.|.+..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            333445579999999999999999997754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.09  E-value=0.00037  Score=50.58  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .--|+|+|++|+|||||++.|...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.09  E-value=0.00037  Score=49.82  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+..+...|+++|.+||||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45556678999999999999999988654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.08  E-value=0.00021  Score=55.48  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.07  E-value=0.0003  Score=50.43  Aligned_cols=23  Identities=13%  Similarity=0.095  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|+++|++|||||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.07  E-value=0.0017  Score=50.29  Aligned_cols=20  Identities=35%  Similarity=0.632  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 028239            8 KCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~   27 (211)
                      .++++|++|+|||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.06  E-value=0.00031  Score=50.87  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.05  E-value=0.00031  Score=49.72  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 028239            8 KCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~   27 (211)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.01  E-value=0.00038  Score=50.76  Aligned_cols=28  Identities=21%  Similarity=0.089  Sum_probs=22.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |+..+...|+|.|.+||||||+.+.|..
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4445567899999999999999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.00  E-value=0.00038  Score=51.41  Aligned_cols=23  Identities=9%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|+.|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999998743

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.99  E-value=0.001  Score=54.24  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=37.6

Q ss_pred             EEEEEEeCCCCcCccc-ccc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSR-LRP-----LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  124 (211)
                      +.+.|+||||...... ...     ..+..++.+++|+|+.........    ...+..   ..+ .-+|.||.|...
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~---~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE---ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH---HSCCCCEEEECTTSSS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc---cCCCeEEEEecCCCCc
Confidence            5567999999644321 111     123468899999998765433222    233332   234 346899999753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.98  E-value=0.00039  Score=50.69  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|+.|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.98  E-value=0.00044  Score=49.71  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|+|||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.97  E-value=0.00067  Score=47.87  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-.|+++|++|+||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.96  E-value=0.00041  Score=51.11  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999998743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.90  E-value=0.00059  Score=49.78  Aligned_cols=25  Identities=12%  Similarity=0.012  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ....|+|+|++|+|||||++.+.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999988653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.86  E-value=0.00061  Score=47.75  Aligned_cols=20  Identities=15%  Similarity=0.051  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHH
Q 028239            7 IKCVTVGDGAVGKTCMLICY   26 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l   26 (211)
                      .-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.85  E-value=0.00064  Score=47.82  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.85  E-value=0.00066  Score=49.35  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.83  E-value=0.00066  Score=47.44  Aligned_cols=23  Identities=22%  Similarity=0.109  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.83  E-value=0.00063  Score=50.79  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999887653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.81  E-value=0.00067  Score=48.55  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++++|++|+|||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.80  E-value=0.00074  Score=49.39  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.80  E-value=0.0007  Score=47.46  Aligned_cols=22  Identities=9%  Similarity=0.025  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.79  E-value=0.00094  Score=47.15  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.78  E-value=0.00078  Score=49.29  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.77  E-value=0.00075  Score=53.50  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999999754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.77  E-value=0.001  Score=48.06  Aligned_cols=25  Identities=12%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .....|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.76  E-value=0.00089  Score=48.92  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +.|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.76  E-value=0.0009  Score=50.10  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 028239            6 FIKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~   27 (211)
                      .-.|+|+|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.75  E-value=0.0025  Score=43.63  Aligned_cols=25  Identities=12%  Similarity=-0.056  Sum_probs=21.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3469999999999999999987654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.74  E-value=0.0013  Score=47.56  Aligned_cols=26  Identities=12%  Similarity=0.075  Sum_probs=21.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..+...|+|.|++||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999998864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.73  E-value=0.00077  Score=49.92  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.72  E-value=0.00091  Score=50.09  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.71  E-value=0.0012  Score=47.73  Aligned_cols=24  Identities=21%  Similarity=0.019  Sum_probs=21.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|.|++||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.71  E-value=0.0013  Score=49.30  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=21.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+.++|+|.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.70  E-value=0.0011  Score=48.80  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.69  E-value=0.0011  Score=47.93  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.68  E-value=0.00093  Score=48.12  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4899999999999999988753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.68  E-value=0.00099  Score=48.98  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.68  E-value=0.00095  Score=51.03  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999997753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.67  E-value=0.00097  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.67  E-value=0.00099  Score=48.22  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..|+|+|++||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.67  E-value=0.00097  Score=49.82  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.66  E-value=0.0011  Score=47.13  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.65  E-value=0.0011  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.64  E-value=0.001  Score=50.28  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999997754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.64  E-value=0.0015  Score=46.47  Aligned_cols=23  Identities=13%  Similarity=0.044  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.64  E-value=0.0011  Score=46.77  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.63  E-value=0.0011  Score=49.23  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999997753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.63  E-value=0.00092  Score=48.39  Aligned_cols=25  Identities=16%  Similarity=0.060  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..--|+|+|++|+||||+.+.+.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999887653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.62  E-value=0.0011  Score=51.31  Aligned_cols=22  Identities=14%  Similarity=0.090  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999988754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.61  E-value=0.0011  Score=49.82  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.61  E-value=0.0013  Score=47.43  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.61  E-value=0.0011  Score=50.22  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999988763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.60  E-value=0.0013  Score=49.33  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.60  E-value=0.0013  Score=46.78  Aligned_cols=23  Identities=17%  Similarity=0.020  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.60  E-value=0.0012  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999987653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.59  E-value=0.0012  Score=47.84  Aligned_cols=22  Identities=14%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.59  E-value=0.0011  Score=47.27  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.58  E-value=0.0012  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999997753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.58  E-value=0.0015  Score=49.17  Aligned_cols=27  Identities=15%  Similarity=0.090  Sum_probs=21.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +..+.+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999998865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.58  E-value=0.0015  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..-|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.57  E-value=0.0013  Score=49.82  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.57  E-value=0.0015  Score=46.61  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.57  E-value=0.0013  Score=49.53  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.56  E-value=0.0013  Score=49.55  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.56  E-value=0.0013  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.55  E-value=0.0012  Score=48.20  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.55  E-value=0.0017  Score=46.43  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.54  E-value=0.0016  Score=46.12  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|++.|++|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34699999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.54  E-value=0.0015  Score=47.89  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.54  E-value=0.0017  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999976

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.53  E-value=0.0013  Score=50.10  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.53  E-value=0.00098  Score=48.78  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.53  E-value=0.0014  Score=49.81  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.53  E-value=0.0018  Score=49.80  Aligned_cols=25  Identities=16%  Similarity=0.086  Sum_probs=21.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ....-|++.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999965

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.53  E-value=0.0017  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||||++.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.52  E-value=0.0018  Score=46.96  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999998865

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.51  E-value=0.0014  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999997753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.49  E-value=0.0015  Score=49.30  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.49  E-value=0.0013  Score=48.32  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.49  E-value=0.0017  Score=46.13  Aligned_cols=22  Identities=18%  Similarity=0.087  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.48  E-value=0.0015  Score=48.18  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +...|+|.|++||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998863

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.48  E-value=0.0015  Score=49.83  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||+|++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.47  E-value=0.0019  Score=46.91  Aligned_cols=24  Identities=21%  Similarity=-0.050  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.47  E-value=0.0022  Score=46.99  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.46  E-value=0.0022  Score=49.88  Aligned_cols=25  Identities=20%  Similarity=0.048  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...-|+|+|++|||||||++.+.+-
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            4567999999999999999988763

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.45  E-value=0.0016  Score=49.52  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.44  E-value=0.0017  Score=47.68  Aligned_cols=24  Identities=17%  Similarity=0.110  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +.+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.44  E-value=0.0021  Score=48.11  Aligned_cols=24  Identities=17%  Similarity=0.054  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...-|+|+|+.|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998866

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.43  E-value=0.0021  Score=44.88  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.42  E-value=0.0015  Score=48.01  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +...|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.42  E-value=0.0025  Score=49.11  Aligned_cols=25  Identities=16%  Similarity=0.014  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+..-|+|.|++|+|||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999987753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.41  E-value=0.0025  Score=46.19  Aligned_cols=25  Identities=16%  Similarity=0.015  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ....-|+|+|++|+|||||++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.41  E-value=0.0018  Score=45.69  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988854

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.39  E-value=0.0021  Score=47.38  Aligned_cols=22  Identities=14%  Similarity=0.113  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.38  E-value=0.0013  Score=48.79  Aligned_cols=22  Identities=18%  Similarity=0.066  Sum_probs=14.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh-cC
Q 028239            8 KCVTVGDGAVGKTCMLICYT-SN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~-~~   29 (211)
                      -++|+|+.|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.38  E-value=0.0021  Score=48.75  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.37  E-value=0.0021  Score=45.49  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999888654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.37  E-value=0.0019  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||+|++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.37  E-value=0.0027  Score=49.57  Aligned_cols=25  Identities=20%  Similarity=0.048  Sum_probs=21.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...+=|+|+|++|||||||++.|.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999988754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.36  E-value=0.0028  Score=45.99  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=21.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...|+|+|++|+||||+++.|...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.35  E-value=0.0016  Score=51.81  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-+++|+|++|+|||||++.|.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999998775

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.34  E-value=0.0022  Score=45.89  Aligned_cols=23  Identities=17%  Similarity=-0.003  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.34  E-value=0.0024  Score=47.05  Aligned_cols=20  Identities=15%  Similarity=0.099  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.33  E-value=0.0014  Score=45.18  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.32  E-value=0.0027  Score=45.72  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=22.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +...|+|.|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.31  E-value=0.0017  Score=46.04  Aligned_cols=24  Identities=21%  Similarity=-0.002  Sum_probs=16.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.30  E-value=0.00095  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.28  E-value=0.0022  Score=50.86  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|+.|+|||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999988763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.26  E-value=0.0015  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.25  E-value=0.003  Score=46.84  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.25  E-value=0.002  Score=48.44  Aligned_cols=24  Identities=21%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ....|+++|++||||||+.+.|..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.24  E-value=0.0026  Score=50.57  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999988753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.24  E-value=0.0039  Score=44.35  Aligned_cols=24  Identities=25%  Similarity=0.117  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +..-|+++|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.24  E-value=0.0023  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.23  E-value=0.0028  Score=44.72  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-+.++|++|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.23  E-value=0.0022  Score=49.35  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.22  E-value=0.003  Score=45.06  Aligned_cols=21  Identities=19%  Similarity=-0.026  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.21  E-value=0.0026  Score=47.88  Aligned_cols=21  Identities=29%  Similarity=0.238  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.20  E-value=0.0027  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.20  E-value=0.0025  Score=45.71  Aligned_cols=23  Identities=13%  Similarity=0.024  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.19  E-value=0.0036  Score=47.04  Aligned_cols=21  Identities=14%  Similarity=0.115  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 028239            7 IKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~   27 (211)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.18  E-value=0.0028  Score=48.32  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.18  E-value=0.0027  Score=49.23  Aligned_cols=23  Identities=26%  Similarity=0.190  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .--|+++|+.|+||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999998863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.17  E-value=0.0029  Score=50.56  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.17  E-value=0.0029  Score=50.23  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            37899999999999999998753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.003  Score=50.19  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.15  E-value=0.0032  Score=44.08  Aligned_cols=21  Identities=19%  Similarity=0.104  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.15  E-value=0.0028  Score=49.71  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.12  E-value=0.004  Score=47.67  Aligned_cols=25  Identities=16%  Similarity=0.082  Sum_probs=21.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+.+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.11  E-value=0.0028  Score=49.73  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.11  E-value=0.0032  Score=48.78  Aligned_cols=22  Identities=27%  Similarity=0.148  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      --++++|+.|+||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.11  E-value=0.0037  Score=48.47  Aligned_cols=25  Identities=20%  Similarity=0.042  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...-|+|+|+.|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988763

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.11  E-value=0.0033  Score=44.60  Aligned_cols=21  Identities=29%  Similarity=0.235  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.11  E-value=0.0033  Score=47.25  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999988753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.11  E-value=0.004  Score=47.04  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..-|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.10  E-value=0.0033  Score=50.14  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.10  E-value=0.0029  Score=50.47  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+|+|+.|+|||||++.+.+-
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988763

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.10  E-value=0.0032  Score=50.21  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999998754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.10  E-value=0.0029  Score=50.31  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.09  E-value=0.0033  Score=46.16  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999988743

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.09  E-value=0.0048  Score=44.49  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=22.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..++.|.+.|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999988654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.04  E-value=0.0042  Score=46.23  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +.+.|+|.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.04  E-value=0.0012  Score=48.08  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.02  E-value=0.0031  Score=44.46  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||+|+..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.01  E-value=0.0058  Score=45.29  Aligned_cols=25  Identities=16%  Similarity=-0.016  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +..-|++.|++|+||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467999999999999999988653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.00  E-value=0.0038  Score=45.95  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||+|+..+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.99  E-value=0.0037  Score=50.67  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -|+|+|+.|+|||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.99  E-value=0.0031  Score=46.71  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..-|+|.|+.||||||+++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457999999999999999988765

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.98  E-value=0.0042  Score=43.89  Aligned_cols=23  Identities=17%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...|+++|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.98  E-value=0.0041  Score=44.85  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999888754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.93  E-value=0.0053  Score=42.88  Aligned_cols=21  Identities=19%  Similarity=0.118  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.93  E-value=0.0059  Score=47.84  Aligned_cols=91  Identities=14%  Similarity=0.077  Sum_probs=51.1

Q ss_pred             EEEEeCCCCcCccccccc------cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc
Q 028239           56 LGLWDTAGQEDYSRLRPL------SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL  129 (211)
Q Consensus        56 l~l~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  129 (211)
                      +.++|++|..........      ..-..|-.+++.|........+    ....+.+.  --..++++||.|....    
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~----~~~~~~~~--~~it~iilTKlD~~a~----  283 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVE----QARQFNEA--VKIDGIILTKLDADAR----  283 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH----HHHHHHHH--SCCCEEEEECGGGCSC----
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHH----HHHHHHHh--cCCCEEEEeCcCCccc----
Confidence            457999996443321100      1124788899999766543332    22333332  1233778899997432    


Q ss_pred             ccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q 028239          130 ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAV  169 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  169 (211)
                                ...+.......+. |+..++  +|++++++
T Consensus       284 ----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          284 ----------GGAALSISYVIDA-PILFVG--VGQGYDDL  310 (328)
T ss_dssp             ----------CHHHHHHHHHHTC-CEEEEE--CSSSTTCE
T ss_pred             ----------hhHHHHHHHHHCC-CEEEEe--CCCCcccc
Confidence                      1334556666776 777666  56666543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.92  E-value=0.0054  Score=45.48  Aligned_cols=26  Identities=12%  Similarity=0.183  Sum_probs=20.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...++++.|+|+|||||||+...|..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHHH
Confidence            34578999999999999999988854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.90  E-value=0.0027  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.87  E-value=0.0042  Score=51.69  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.||||||+++.+.+-.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.86  E-value=0.0043  Score=49.79  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999998763

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.84  E-value=0.005  Score=44.81  Aligned_cols=21  Identities=24%  Similarity=0.110  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.84  E-value=0.0051  Score=44.82  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..-|+++|.+|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.84  E-value=0.0028  Score=48.82  Aligned_cols=27  Identities=15%  Similarity=0.214  Sum_probs=18.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |+.. .+-|+|.|++||||||+.+.|..
T Consensus         1 Ms~~-~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence            6654 45699999999999999988754

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.83  E-value=0.0038  Score=45.47  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999887765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.82  E-value=0.0052  Score=45.49  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.81  E-value=0.0044  Score=47.61  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.004  Score=51.13  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999988753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.76  E-value=0.0055  Score=43.34  Aligned_cols=21  Identities=19%  Similarity=0.079  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999998854

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.76  E-value=0.0054  Score=47.01  Aligned_cols=24  Identities=17%  Similarity=0.121  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.73  E-value=0.0059  Score=45.75  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      -.|++.|++|+|||++++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.72  E-value=0.006  Score=44.68  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.72  E-value=0.0067  Score=46.65  Aligned_cols=24  Identities=13%  Similarity=-0.072  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.-+++.|+||+|||+|++.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356788899999999999988654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.71  E-value=0.006  Score=44.10  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||+|+..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999888653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.70  E-value=0.0058  Score=46.53  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.70  E-value=0.0027  Score=50.29  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.69  E-value=0.0058  Score=45.99  Aligned_cols=22  Identities=23%  Similarity=0.054  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      -.|+++|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.69  E-value=0.0061  Score=46.86  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.68  E-value=0.0059  Score=48.22  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.66  E-value=0.006  Score=47.08  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35999999999999999988764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.65  E-value=0.0098  Score=47.16  Aligned_cols=22  Identities=27%  Similarity=0.148  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      --|+++|+.|+||||+++.+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999998864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.64  E-value=0.022  Score=46.51  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=17.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 028239            7 IKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~   27 (211)
                      .=|.|+|+.++|||+|+|.++
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCchhHHHHHHH
Confidence            445699999999999999654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.63  E-value=0.0063  Score=48.62  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      --++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.59  E-value=0.032  Score=44.28  Aligned_cols=19  Identities=21%  Similarity=0.399  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 028239            9 CVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~   27 (211)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.55  E-value=0.01  Score=42.77  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|.|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.54  E-value=0.01  Score=48.98  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      --|+|+|+.|+|||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4689999999999999998864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.52  E-value=0.0088  Score=46.03  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999976543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.48  E-value=0.0049  Score=48.03  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      --++|+|+.|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999999653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.48  E-value=0.0076  Score=46.89  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.48  E-value=0.013  Score=44.40  Aligned_cols=26  Identities=15%  Similarity=0.245  Sum_probs=22.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .....+++.|++|+|||+|+..+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999988764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.45  E-value=0.011  Score=46.06  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..|+|+|++|+|||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.43  E-value=0.01  Score=40.82  Aligned_cols=19  Identities=21%  Similarity=0.401  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 028239            9 CVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~   27 (211)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999998875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.39  E-value=0.012  Score=47.56  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...-|+++|.+||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.36  E-value=0.0093  Score=45.77  Aligned_cols=24  Identities=21%  Similarity=0.148  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999988653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.35  E-value=0.009  Score=49.24  Aligned_cols=21  Identities=14%  Similarity=0.319  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.0095  Score=48.36  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.33  E-value=0.009  Score=48.71  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      +++|+|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.33  E-value=0.0049  Score=42.00  Aligned_cols=23  Identities=9%  Similarity=0.095  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999877654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.32  E-value=0.0085  Score=45.62  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.29  E-value=0.01  Score=42.91  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999997664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.29  E-value=0.0099  Score=46.38  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.28  E-value=0.0096  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+--
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.28  E-value=0.0093  Score=50.43  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999987653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.26  E-value=0.01  Score=45.67  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||++++.+...
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            6999999999999999988764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.25  E-value=0.012  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHH
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICY   26 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l   26 (211)
                      .+.+|++++|...|||||+++.+
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHH
Confidence            46799999999999999999755

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.25  E-value=0.011  Score=47.98  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +-.|++.||||+|||.|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            347999999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.25  E-value=0.011  Score=50.02  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.23  E-value=0.015  Score=48.62  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.23  E-value=0.013  Score=43.40  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ....|+|+|++|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999988864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.23  E-value=0.015  Score=42.92  Aligned_cols=28  Identities=14%  Similarity=-0.012  Sum_probs=21.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |...+..-|++.|.+|+||||+++.+..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445567899999999999999988754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.20  E-value=0.017  Score=45.65  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=20.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...+|+++|++|+||||+.+.+..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999986653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.20  E-value=0.011  Score=43.80  Aligned_cols=21  Identities=19%  Similarity=0.165  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++++|++|+|||+|+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999877654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.20  E-value=0.0097  Score=47.02  Aligned_cols=24  Identities=21%  Similarity=0.105  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.20  E-value=0.0087  Score=47.00  Aligned_cols=20  Identities=15%  Similarity=0.215  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.18  E-value=0.011  Score=48.07  Aligned_cols=24  Identities=17%  Similarity=0.128  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.17  E-value=0.011  Score=46.84  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|.|++|+|||+|++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999887643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.16  E-value=0.011  Score=46.35  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.15  E-value=0.013  Score=45.70  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999988654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.012  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999998743

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.03  E-value=0.013  Score=47.09  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||||+|||.|++++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            46999999999999999998764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.00  E-value=0.0059  Score=46.07  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.99  E-value=0.013  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999888654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.99  E-value=0.012  Score=46.50  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.97  E-value=0.016  Score=41.28  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      ++|+|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            799999999999999999855

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.97  E-value=0.011  Score=50.27  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+--
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999887643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.96  E-value=0.013  Score=45.26  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 028239            7 IKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~   27 (211)
                      -.|+++|+.|+||||++..|.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999998775

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.92  E-value=0.017  Score=40.78  Aligned_cols=24  Identities=13%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999998754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.92  E-value=0.016  Score=43.67  Aligned_cols=24  Identities=13%  Similarity=0.152  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ..|++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            468999999999999999987654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.92  E-value=0.009  Score=50.49  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999877654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.92  E-value=0.014  Score=48.82  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.92  E-value=0.015  Score=46.05  Aligned_cols=22  Identities=14%  Similarity=0.225  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|++.|++|+|||+|++.+...
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5999999999999999988764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.89  E-value=0.012  Score=44.37  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +...|+|.|.+|+||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999877653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.87  E-value=0.013  Score=46.41  Aligned_cols=24  Identities=17%  Similarity=0.059  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999988753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.85  E-value=0.025  Score=43.79  Aligned_cols=22  Identities=23%  Similarity=0.155  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      --|+++|++|+||||++..+..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            4688999999999999987753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.84  E-value=0.017  Score=44.71  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999887653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.84  E-value=0.045  Score=42.41  Aligned_cols=21  Identities=14%  Similarity=0.150  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.82  E-value=0.018  Score=48.27  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.82  E-value=0.014  Score=46.07  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+|||+|++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.80  E-value=0.012  Score=49.83  Aligned_cols=22  Identities=14%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.78  E-value=0.023  Score=48.25  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.77  E-value=0.02  Score=42.51  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..-|++.|..|+||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999988653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.77  E-value=0.017  Score=49.10  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.76  E-value=0.017  Score=45.10  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999998654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.75  E-value=0.021  Score=44.87  Aligned_cols=23  Identities=35%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999888653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.74  E-value=0.018  Score=46.69  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||||+|||.|++++.+.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            46999999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.74  E-value=0.016  Score=48.01  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.74  E-value=0.017  Score=47.59  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|+++|++|+|||+|++.+.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998763

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.73  E-value=0.017  Score=45.64  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.|++.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.72  E-value=0.016  Score=48.54  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -++++|++|+|||||++.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.69  E-value=0.016  Score=47.63  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.++++|+||+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999887653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.69  E-value=0.018  Score=41.93  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+.|++.|++|+||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.67  E-value=0.018  Score=45.50  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...|++.|++|+|||++.+.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.66  E-value=0.019  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+|||++++.+...
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.64  E-value=0.018  Score=46.99  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      --+++.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.02  Score=48.70  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++|+|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.59  E-value=0.02  Score=44.56  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++|.|++|+|||+|++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            4889999999999999998765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.58  E-value=0.029  Score=43.43  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-|+|+|++|||||+|...+...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45789999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-45
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-44
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-43
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-41
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-40
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-39
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-38
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-38
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-36
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-34
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-33
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-33
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-33
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-33
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-33
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-33
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-32
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-32
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-29
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-28
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-28
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-28
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-28
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-27
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-27
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-26
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-26
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-25
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-24
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-24
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-24
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	7e-23
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-22
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-21
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-21
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-21
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-20
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-20
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-18
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-17
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	7e-17
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-16
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-16
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-16
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-14
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-13
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-13
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-12
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-08
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.001

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (373), Expect = 1e-45
 Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 11/196 (5%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+F++ FS++S +S+ENV +KW+PE+    P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 127 GYLADHVGSNVIT--TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
             +     +          E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP  K
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183

Query: 185 EMMARKKRHRRSSCSI 200
                    +   C +
Sbjct: 184 ---------KSRRCVL 190

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 1e-44
 Identities = 110/181 (60%), Positives = 133/181 (73%), Gaps = 2/181 (1%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 122
           GQEDY RLRPLSY   D+ ++ FSL+S AS+ENV  KW PE+R   PN PI+LVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 REDRGYLAD--HVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180
           R+D+  +          IT  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 P 181
           P
Sbjct: 182 P 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 5e-43
 Identities = 91/181 (50%), Positives = 132/181 (72%), Gaps = 2/181 (1%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
             +  +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V V G    LGL+DT
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDT 64

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AGQEDY RLRPLSY   D+F++ FS+++ AS++NV ++W+PEL+ +APNVP +L+GT++D
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124

Query: 122 LREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           LR+D   L   + +    I   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  +L 
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

Query: 180 P 180
           P
Sbjct: 185 P 185

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (340), Expect = 4e-41
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V ++G  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YRGA   +L + +    ++ N+ + +            ++LVG K D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                       +T  QGE L K++G   +IE S+K   NV  +F T  K++ +
Sbjct: 123 V-----------VTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 4e-40
 Identities = 84/175 (48%), Positives = 115/175 (65%), Gaps = 2/175 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++ VDG  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR D 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 127 GYLADH--VGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
               +   +    +   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (333), Expect = 1e-39
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V +DG  V L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YRG+   ++ + +  + S+  V        R     V  +LVG K      
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK------ 120

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
                  +    +      +         ++E S+    NV+  F T  + + +   ++ 
Sbjct: 121 -----CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 186 MM-ARKKRHRRSSCSI 200
           +    +K+  + + ++
Sbjct: 176 LNETTQKKEDKGNVNL 191

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-38
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 12/177 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YR A+  +L + +    S+  + +      +  +  V  VLVG K+DL E 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 182
           R                      +     Y+E S+K   NV+ +F      ++   R
Sbjct: 126 REVSQQRAEEF-----------SEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 5e-38
 Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+  +D   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y  +RPLSY  +D  ++ F +    + ++VLKKW  E++ F PN  ++LVG K DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 127 GYLADHVGSN--VITTAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKVVLQ 179
             L +        ++  QG  + KQIGAA YIECS+   +N V+ +F  A    + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 6e-38
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + +I T+  +F    + +DG  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YRGA   +L + + +  S++N+           + +V  +++G K D+ + 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           R            +  +GE+L    G   ++E S+K   NV+  F T  + +  
Sbjct: 127 RQV----------SKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKA 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-36
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VDG  +   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y R+    YRGA   +L + +    +YENV +           N+ I+LVG K DLR  R
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEM 186
               D   +             +    ++IE S+    NV+  F   +  + +   +K++
Sbjct: 126 AVPTDEARAF-----------AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQE 65
            K + +GD  VGK+C+L  +T  KF  D   T+  +  +  + V G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YRGA   ++ + +  R++Y ++            PN  I+L+G K DL   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R            T  + ++  ++ G   ++E S+KT +NV+  F  A K
Sbjct: 125 RDV----------TYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAK 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 3e-34
 Identities = 60/185 (32%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-----------DGSIVN 55
           IK + +GD  VGKT  L  YT NKF   +I TV  +F     V               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 56  LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIV 114
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV                 IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 115 LVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 174
           L+G K DL + R               Q  EL  + G   Y E S+ T QNV+   +T +
Sbjct: 126 LIGNKADLPDQREV----------NERQARELADKYG-IPYFETSAATGQNVEKAVETLL 174

Query: 175 KVVLQ 179
            ++++
Sbjct: 175 DLIMK 179

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +   KF  D   T+   F S  + V G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  +    YRGA   +L + + SR +Y  +           + N+ I+L G K DL  DR
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
                                 Q     ++E S+ T +NV+  F    + +L      E
Sbjct: 127 EVTFLEASRFA-----------QENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +  +   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y  +    YRGA  F+L + + +  S+  V             N  ++LVG K D+ ++R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
              ++                  +G   + E S+K   NVK  F+  + V+ +
Sbjct: 127 VVSSERGRQLA----------DHLG-FEFFEASAKDNINVKQTFERLVDVICE 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    +I TV  +F +  + VDG  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  +    YR A   +L + + ++AS++N+             +V ++L+G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                      V+    GE+L K+ G   ++E S+KT  NV   F    K + +
Sbjct: 128 ----------RVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 4e-33
 Identities = 46/170 (27%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V +G G VGK+ + + + +  F   Y PT+ D +   + VD S   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           ++ +R L  +    F+L +SL+++ S++++       +R      VP++LVG K+DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           R            ++++G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 124 REV----------SSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVR 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 4e-33
 Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 12/180 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T + F  +   T+  D     ++VDG+   L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            +  L P  YRGA   +L + +  R ++  +             N  + ++      +E+
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 185
           R           +   +G +  ++     +IE S+KT   V+  F+  ++ ++Q P   E
Sbjct: 128 R----------EVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 176

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 5e-33
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T  +F   +  T+   F A +  +DG  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  +    YRGA   +L + +  R ++ ++        +  + N+ I+L+G K DL   R
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
               +           GE   ++ G   ++E S+KT  NV+  F    K + +
Sbjct: 125 DVKREE----------GEAFAREHG-LIFMETSAKTACNVEEAFINTAKEIYR 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 7e-32
 Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 18/182 (9%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGSIVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +NKF T    T+   F      VDG  V + +WDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 63  GQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+   W  E   +A      + P V++G
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 122

Query: 118 TKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 177
            K+D+ E +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 123 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

Query: 178 LQ 179
           L 
Sbjct: 172 LA 173

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 8e-32
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  + F   Y  T+  D  S  + ++   + L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  L P   R +   V+ + + +  S++   K           +V I+LVG K DL + R
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
               +            E   K++    +IE S+K   NVK +F     
Sbjct: 122 QVSIEEG----------ERKAKELN-VMFIETSAKAGYNVKQLFRRVAA 159

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 9e-29
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +   +F      T+     +  V +D + V   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           Y  L P+ YRGA   ++ + + +  S+           R+ +PN+ I L G K DL   R
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                          Q  +      +  ++E S+KT  NV  +F    K + +
Sbjct: 128 AV-----------DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 3e-28
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           S+  K V VG G VGK+ + I +  + F +DY PT+ D+++   +VDG    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLDL 122
           QE++  +R    R    F+L F++  R S+  V K +   LR +   + P+VLVG K DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                          +  ++           AY E S+K + NV   F+  ++ V +
Sbjct: 124 ESQ----------RQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  102 bits (254), Expect = 3e-28
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  ++F  DY PT  D++   V +DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRED 125
           + +R   +R  + F+  FS I+          +  ++ R     NVP +LVG K DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 178
           R            +  + +    Q     Y+E S+KT+ NV  VF   ++ + 
Sbjct: 125 RQV----------SVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIR 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-28
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   V +DG    L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRED 125
           S +R    R  + F+  F++ +  S+E++  ++  +++R     +VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                       + + Q ++L +  G   YIE S+KT+Q V+  F T ++ + Q
Sbjct: 124 T-----------VESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 6e-28
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
           ++ +R L  +    F L +S+ +++++ ++       LR     +VP++LV         
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILV--------- 114

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
            G   D     V+   QG+ L +Q    A++E S+K++ NV  +F   ++
Sbjct: 115 -GNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 3e-27
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGSIVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  NKF   +I T+  +F    + + G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  L P+ YR ++  +L + +    S++ V        +     + + +VG K+DL ++R
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                       +  + E   + +G A +   S+K  + ++ +F    K +++
Sbjct: 125 HV----------SIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (248), Expect = 3e-27
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN--VAVDGSIVNLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++K+   Y  T+  +F           +  + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN----VPIVLVGTKL 120
           E +  L    YRGAD  VL + + + +S+EN+       L     N     P V++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
           D  E +  +++            +EL K +G       S+K   NV   F+   +  LQ
Sbjct: 123 DAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.8 bits (242), Expect = 3e-26
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 16/185 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQE 65
           +K + +GD  VGKT ++  Y + KF   Y  T+  +F     + D  +V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP----NVPIVLVGTKLD 121
            +  L    YRGAD  VL F + +  +++ +       L + +P    N P V++G K+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
           L   +           + T + +          Y E S+K   NV+  F T  +  L+  
Sbjct: 123 LENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

Query: 182 RRKEM 186
              E+
Sbjct: 172 TEVEL 176

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 3e-26
 Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 14/180 (7%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           S  +  + V VG G VGK+ + I +  + F TDY PT+ D+++    +D     L + DT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR--FAPNVPIVLVGTK 119
           AGQE++  +R    R  + F+L FS+  R S+E +  K+  ++ R       P++L+G K
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNK 119

Query: 120 LDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
            DL   R            T  +G++L +Q+    Y+E S+K + NV   F   ++V+ +
Sbjct: 120 ADLDHQRQV----------TQEEGQQLARQLK-VTYMEASAKIRMNVDQAFHELVRVIRK 168

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.3 bits (233), Expect = 4e-25
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDG-SIVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F           V   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
            ++ L P+ YR A   ++ + +    S+            + + ++ I LVG K+D+ ++
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
                   G   +   +GE+L ++ G   + E S+KT +NV  VF    +
Sbjct: 124 -------GGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGE 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.1 bits (230), Expect = 1e-24
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 12/174 (6%)

Query: 3   ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLG-LWDT 61
           A + +K   +GD  VGK+ ++  +  + F  +  PT+  +F        + ++   +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLD 121
           AG E +  L P+ YRG+   ++ + +    ++  +        +   P++ + + G K D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           L + R                 ++    I  A ++E S+K   N+  +F    +
Sbjct: 121 LTDVREV----------MERDAKDYADSIH-AIFVETSAKNAININELFIEISR 163

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.8 bits (229), Expect = 1e-24
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDR 126
           S +R    R  D F++ +S+  +AS+E+V +     LR     + P++LV  K+DL   R
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
                      +T  QG+E+  +     YIE S+K    NV   F   ++V+ Q
Sbjct: 126 ----------KVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 9e-24
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
            +    G G VGK+ +++ +    F   YIPTV D +   ++ D SI  L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYEN--VLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
           +  ++ LS      F+L +S+ SR S E    + + + E++    ++PI+LVG K     
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC---- 118

Query: 125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                 D   S  + +++ E L +     A++E S+K   NVK +F   + +  +
Sbjct: 119 ------DESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLW-DTAGQED 66
           K V VGDG  GKT  +  + + +F   Y+ T+       V             DTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDR 126
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L R   N+PIVL G K+D+++ +
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
                 V               +     Y + S+K+  N +  F    + ++  P
Sbjct: 124 VKAKSIV-------------FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           +K    G   VGK+ +++ + + +F  +Y PT+   +     +D  +V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
             + R    R  + FVL + +  R S+E VL             NV ++LVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQ 179
           R            +T +GE+L  ++   A+ ECS+ T + N+  +F    + V +
Sbjct: 122 RQV----------STEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRR 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 1e-21
 Identities = 33/185 (17%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           ++   +GD   GK+ ++  + +  +      T  + +   + VDG    + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP----NVPIVLVGTKLDL 122
                      AD  +  FSL    S++ V  +   +L          + + LVGT+  +
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 182
                         V+  A+   L   +   +Y E  +    NV  VF    + V+   +
Sbjct: 119 SASS--------PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 170

Query: 183 RKEMM 187
           +++++
Sbjct: 171 QQQLL 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (207), Expect = 2e-21
 Identities = 54/174 (31%), Positives = 76/174 (43%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGSIVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 66  DYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED 125
           ++  +    YRGA   VL FS   R S+E +   W  ++     ++P             
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPT----------AL 111

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                D +  + I   + E L K++    +   S K   NV  VF    +  LQ
Sbjct: 112 VQNKIDLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.5 bits (205), Expect = 5e-21
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 17/174 (9%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAG 63
           +  K + +GD  VGKTC+   + + +FP     T+  +     V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 64  QEDYSRL-RPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-RFAPNVPIVLVGTKLD 121
           QE + +      YR     V  + + + AS+ ++        +   A ++P +LVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ---NVKAVFDT 172
           LR                T   ++           E S+K      +V+A+F T
Sbjct: 121 LRSAIQV----------PTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMT 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 13/167 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           ++ + VG  A GKT +L      +  T      F+  +    V+   ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRED 125
              L    ++     +       R       ++ M  L      +  +++   K      
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK------ 110

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 172
              L + + +  IT   G    +           + +   +    D 
Sbjct: 111 -QDLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDW 155

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           SK  K   +G  +VGK+ + I +   +F   Y PT+ + F+  + V+G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 123
           Q++YS          + ++L +S+ S  S+E +       L         +++       
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML------- 114

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
              G   D     VI+  +G+ L +    AA++E S+K  Q    VF   I 
Sbjct: 115 --VGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIIL 163

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 7e-18
 Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 13/169 (7%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           +K ++ + +G  A GKT +L      +  T      F+  +         V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 65

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122
           Q+    L    Y G    +       R   +   ++    +      +  I++   K   
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK--- 122

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
                 L D +  + I    G    +           + +   +     
Sbjct: 123 ----QDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLT 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 1e-17
 Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 16/177 (9%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
            +  K + VG    GKT +L  ++ N+          +       +  +     +WD  G
Sbjct: 13  HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGG 68

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKLDL 122
           QE         Y   +  ++      R       ++    L         +++   K D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD---TAIKV 176
           +E             I+        K         C + T + +    +   + +K+
Sbjct: 129 KECM-------TVAEISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRLKI 177

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           K ++ + +G    GKT +L      +  T   PT+  N      +    + L +WD  GQ
Sbjct: 16  KELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV---ETLSYKNLKLNVWDLGGQ 71

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 123
                     Y      +       +       K+    L+     +  +++   K D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD-- 129

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 179
                    + ++ ++        K     + +  S+   + +    D  I V+ +
Sbjct: 130 -----QPGALSASEVSKELNLVELKDRS-WSIVASSAIKGEGITEGLDWLIDVIKE 179

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 7e-17
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 6   FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           + + V +G+  VGK+ +   +        +D      D +   + VDG    + L D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPE--LRRFAPNVPIVLVGTKLD 121
            +  +              L    I+  +      +   +    R   ++PI+LVG K  
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK-- 120

Query: 122 LREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 181
                   +D V    ++ ++G           +IE S+  Q NVK +F+  ++ V    
Sbjct: 121 --------SDLVRCREVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVR--- 168

Query: 182 RRKE 185
            R++
Sbjct: 169 LRRD 172

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 71.5 bits (174), Expect = 2e-16
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 13/175 (7%)

Query: 2   SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDT 61
           +  + ++ + +G    GKT +L    S           F+  S           L +WD 
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDI 67

Query: 62  AGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAP-NVPIVLVGTKL 120
            GQ          +   DI +       R  +E   ++    L       VP+++   K 
Sbjct: 68  GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127

Query: 121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
           DL            ++ I         +         CS+ T + V+   +   K
Sbjct: 128 DLL-------TAAPASEIAEGLNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCK 174

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.5 bits (174), Expect = 3e-16
 Identities = 25/201 (12%), Positives = 56/201 (27%), Gaps = 34/201 (16%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           + +K + +G G  GK+ ++            I                 ++  ++D  GQ
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQ 52

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENV----------LKKWMPELR-RFAPNVPI 113
               +     + G    +   +L                   +K +      ++  +  I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 114 VLVGT-------KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA--------YIEC 158
           +L          K+          ++ GSN    A      +                  
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 159 SSKTQQNVKAVFDTAIKVVLQ 179
            +   +NV+ VFD    V+++
Sbjct: 173 CATDTKNVQFVFDAVTDVIIK 193

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 3e-16
 Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED 66
           ++   VG    GKT  +    S +F  D IPTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 67  YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR-FAPNVPIVLVGTKLDLRED 125
           +  +     RG    V       +   E    +    L +     +P++++G K D    
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD---- 115

Query: 126 RGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
              L   +    +         +          S K + N+       I+
Sbjct: 116 ---LPGALDEKELIEKMNLSAIQDRE-ICCYSISCKEKDNIDITLQWLIQ 161

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.5 bits (174), Expect = 4e-16
 Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           + +K + +G G  GK+  +            +PT           D   V   + D  GQ
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQ 55

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENV----------LKKWMPELRRFA-PNVPI 113
               R     +      +   +L                      +   +      N  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 114 VLVGTKLDLREDR-------GYLADHVGSNVITTA-------QGEELRKQIGAAAYI-EC 158
           +L   K DL E++        Y  ++ G      A          +L        Y    
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 159 SSKTQQNVKAVFDTAIKVVLQ 179
            +   +N++ VF      +LQ
Sbjct: 176 CATDTENIRFVFAAVKDTILQ 196

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 71.3 bits (173), Expect = 4e-16
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 9/172 (5%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           K  K V +G    GKT +L     ++           +      +  + +    +D  G 
Sbjct: 12  KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGH 67

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWM-PELRRFAPNVPIVLVGTKLDLR 123
               R+        +  V               ++           NVPI+++G K+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 124 EDRGY--LADHVGSNVITTAQGEELRKQIGAAA--YIECSSKTQQNVKAVFD 171
           E      L +  G    TT +G    K++ A       CS   +Q     F 
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 4/164 (2%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + +G    GKT +L    +++  T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
            RL    +   +  V          ++    +               ++        +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 128 YLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFD 171
             A+   +  +    G +  +         CS   +      F 
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 7e-14
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 13/172 (7%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           + ++ + +G    GKT +L  +      T   PT+  N          +    +WD  GQ
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQ 56

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRR-FAPNVPIVLVGTKLDLR 123
           +         +   D  +       R   ++  ++    L         +++   K DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 124 EDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
                      S        E    +        CS+ T +++    D  + 
Sbjct: 117 GAL--------SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 1e-13
 Identities = 22/173 (12%), Positives = 49/173 (28%), Gaps = 13/173 (7%)

Query: 4   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG 63
           ++ ++ + +G    GKT +L      +  T    T+         V    +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 64  QEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 122
                      Y   D  +       R        + +  L         +V+   K D+
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 123 REDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175
            +          S+ +  + G    K        + S+     +    +  ++
Sbjct: 119 EQAM-------TSSEMANSLGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVE 163

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 1e-13
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 13/178 (7%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +   +            +  ++ VDG   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLREDR 126
             L        D +V+ +S+  + S+E   +  +   R    + VPI+LVG K DL   R
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 127 GYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 184
                       +  +G           +IE S+    NV+A+F+  ++ +      K
Sbjct: 122 EV----------SVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (146), Expect = 4e-12
 Identities = 26/202 (12%), Positives = 54/202 (26%), Gaps = 33/202 (16%)

Query: 5   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ 64
           + +K + +G G  GK+  L      +      PT   +       +   V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 65  EDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELR-----------RFAPNVPI 113
               +     +      +   S           ++                 R   NV I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 114 VLVGT-------KLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA---------YIE 157
           +L          K+ +   + Y  +  G         + L +               +  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 158 CSSKTQQNVKAVFDTAIKVVLQ 179
            ++   +N++ VF      +L 
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 10  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR 69
           + VG    GKT + +   + ++  D   ++ D+ +     +    +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  LRPLSY-RGADIFVLAFSLISRASY----ENVLKKWMPELRRFAPNVPIVLVGTKLDLRE 124
                +   A   V      +           L + + +      +  +++   K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 125 DRG 127
            + 
Sbjct: 123 AKS 125

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 20/131 (15%)

Query: 8   KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
           + + +G G  GK+ ++            + T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENV------------LKKWMPELRRFAPNVPIVL 115
            R     +      +   +  S                   L K +   R     + ++L
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR-TISVIL 119

Query: 116 VGTKLDLREDR 126
              K DL  ++
Sbjct: 120 FLNKQDLLAEK 130

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 15/169 (8%)

Query: 12  VGDGAVGKTCMLICYTSNKF----PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY 67
            G    GKT +L   T++       +    +  D   + V +     ++ L         
Sbjct: 9   AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLK 68

Query: 68  SRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG 127
           +R + +      +           + E ++             + I++   K +L   R 
Sbjct: 69  TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR- 127

Query: 128 YLADHVGSNVITTAQGEELRKQI----GAAAYIECSSKTQQNVKAVFDT 172
                   + I  A   E++K I     +   +E     +   +   D 
Sbjct: 128 ------PPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDV 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.81
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.38
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.28
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.01
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.96
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.55
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.29
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.09
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.01
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.85
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.81
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.65
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.61
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.57
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.57
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.56
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.52
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.48
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.45
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.41
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.37
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.36
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.32
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.24
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.22
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.2
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.19
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.16
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.12
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.05
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.04
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.98
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.96
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.95
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.95
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.93
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.91
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.91
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.89
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.88
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.88
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.87
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.84
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.82
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.81
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.81
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.81
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.81
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.78
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.78
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.75
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.75
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.74
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.74
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.71
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.69
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.68
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.68
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.68
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.65
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.65
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.64
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.57
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.56
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.55
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.5
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.5
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.5
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.49
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.46
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.43
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.4
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.37
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.36
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.35
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.32
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.29
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.27
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.25
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.24
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.22
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.2
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.13
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.05
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.04
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.98
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.98
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.94
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.94
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.93
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.93
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.82
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.79
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.73
d1okkd2	207	GTPase domain of the signal recognition particle r	95.6
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.57
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.55
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.49
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.42
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.32
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.26
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.21
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.15
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.15
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.15
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.08
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.08
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.97
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.94
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.91
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.91
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.74
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.71
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.62
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.53
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.47
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.3
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.28
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.22
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.06
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.99
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.96
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.85
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.82
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.79
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.73
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.7
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.69
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.49
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.31
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.22
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.18
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.03
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.02
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.0
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.91
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.83
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.63
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.62
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.55
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.23
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.55
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.5
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.43
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.3
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.92
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.66
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	89.43
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.22
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.02
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.44
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.36
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.34
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.26
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	88.02
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.75
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.58
d1okkd2	207	GTPase domain of the signal recognition particle r	86.91
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.76
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.92
d1j8yf2	211	GTPase domain of the signal sequence recognition p	84.76
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	83.95
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.95
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.4
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.76
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.48
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.47
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.32
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.26
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.94
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.53
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.49
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.46
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	80.4

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-39  Score=235.65  Aligned_cols=177  Identities=52%  Similarity=0.955  Sum_probs=157.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||+++|..+.++..+.+|.+........+++..+.+.+||++|+++|...+..+++++|++++||
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   82 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   82 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence            69999999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++++||+.+...|...+....++.|+++|+||+|+.+.....  ......+.++.+++++++++++..+|+++||++|
T Consensus        83 d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  162 (191)
T d2ngra_          83 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ  162 (191)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTC
T ss_pred             ccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            99999999999566777787777899999999999997643211  1122344589999999999988779999999999


Q ss_pred             CCHHHHHHHHHHHHcCCch
Q 028239          164 QNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~~~~  182 (211)
                      .||+++|+.+++.++++..
T Consensus       163 ~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         163 KGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             TTHHHHHHHHHHHHTSCCS
T ss_pred             cCHHHHHHHHHHHHhcCcC
Confidence            9999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=233.59  Aligned_cols=177  Identities=51%  Similarity=0.970  Sum_probs=157.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +...+||+|+|++|+|||||+++|+.+.+...+.+|.++.....+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            35678999999999999999999999999999999998888888888899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||+++++||+.+...|...++...+++|+++|+||+|+.+.....  ......+.++.+++.+++++++..+|+||||
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA  165 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  165 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence            99999999999988678888888777899999999999997643321  1222345689999999999999779999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.||+++|+.++++++.
T Consensus       166 k~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         166 LTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=229.92  Aligned_cols=174  Identities=48%  Similarity=0.880  Sum_probs=155.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      ..||+|+|++|+|||||+++|..+.+++.+.+|.++.......+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999999999988888888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++++||+.+...|...+....+++|++|||||+|+...+...  ......+.++.++++++++.++..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999998677788888777899999999999997654321  1123345688999999999999879999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .||+++|+.+++.+++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=229.40  Aligned_cols=165  Identities=33%  Similarity=0.553  Sum_probs=151.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +.+.+||+|+|++|||||||+++|.++.+...+.++..+.....+.+++..+.+.+||++|++++...+..+++++|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            56789999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++.+|..+ ..|...+....  ++.|++|||||+|+.+.+.          +..++++.+++..+. +|++|||
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  150 (173)
T d2fn4a1          83 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  150 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             eecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc----------cchhhhhHHHHhcCC-EEEEEeC
Confidence            99999999999998 78887776542  6899999999999987654          788999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 028239          161 KTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++|.||+++|+.+++.+.+
T Consensus       151 k~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999998854

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=226.02  Aligned_cols=163  Identities=32%  Similarity=0.456  Sum_probs=150.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ++.+||+|+|++|+|||||+++|.++.+.+.+.+|.+..+...+.+++..+.+.+||++|.+.+..++..+++.+|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            57799999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++++|..+ ..|+..+.+..  +++|+++||||+|+...+.          ++.+++++++++++. +|+++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~Sak  149 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            9999999999999 88887776543  5899999999999987654          889999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 028239          162 TQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~  178 (211)
                      +|.||+++|+.|++.+.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-38  Score=223.99  Aligned_cols=162  Identities=36%  Similarity=0.562  Sum_probs=150.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|++|+|||||+++|.++.+...+.+|.+ +........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999999988886 45567788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ||++++++++.+ ..|++.+.+..+++|++|||||+|+.+.+.          ++.++++++++..+. +|+++||++|.
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g~  149 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDL  149 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------eeehhhHHHHHHcCC-EEEEeccCCCc
Confidence            999999999998 899999988778999999999999987654          888999999999998 99999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 028239          165 NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~  179 (211)
                      ||+++|++|++.+++
T Consensus       150 ~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         150 NVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             SSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-38  Score=226.61  Aligned_cols=178  Identities=62%  Similarity=1.036  Sum_probs=158.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ++.+||+|+|.+|||||||+++|+.+.|...+.+|.++.....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            56899999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++++|+.+...|...+....++.|++||+||+|+..++...  ........+...++..++++++.++|+||||+
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            9999999999998566888887777899999999999987654321  22233445778899999999997799999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCc
Q 028239          162 TQQNVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~  181 (211)
                      +|.||+++|+++++.++.++
T Consensus       163 ~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TCTTHHHHHHHHHHHHSCCC
T ss_pred             CCcCHHHHHHHHHHHHcCCC
Confidence            99999999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.4e-38  Score=224.44  Aligned_cols=162  Identities=32%  Similarity=0.570  Sum_probs=147.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+|+|++++|||||+++|..+.+...+.+|.++.+...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   83 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence            57999999999999999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++++++.+ ..|++.+.+..  +++|+++||||+|+.+.+.          ++.++++++++..+. +|+++||++|
T Consensus        84 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g  151 (168)
T d1u8za_          84 SITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKTR  151 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTTC
T ss_pred             eccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCCC
Confidence            99999999999 88988887653  6899999999999977654          889999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .||+++|++|++.+..
T Consensus       152 ~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         152 ANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHC
Confidence            9999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-38  Score=224.41  Aligned_cols=160  Identities=24%  Similarity=0.382  Sum_probs=132.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|+|||||+++|.+..+.. +.++....+...+.+++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999887643 4556677777888899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ++++.+++.+ ..|+..+....  .++|+++||||+|+.+.+.          ++..+++++++..+. +|+++||++|.
T Consensus        81 ~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~~~  148 (168)
T d2gjsa1          81 VTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALHH  148 (168)
T ss_dssp             TTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTS-EEEECBTTTTB
T ss_pred             cccccccccc-ccccchhhcccccccceEEEeecccchhhhcc----------hhHHHHHHHHHhcCC-EEEEEeCCCCc
Confidence            9999999999 88988887655  5789999999999987654          889999999999998 99999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 028239          165 NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~  179 (211)
                      ||+++|+.|++.+..
T Consensus       149 ~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         149 NVQALFEGVVRQIRL  163 (168)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-37  Score=222.60  Aligned_cols=163  Identities=34%  Similarity=0.567  Sum_probs=150.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ..+||+++|++++|||||++++.++.+.+.+.+|..+.+...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            46999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||+++++||..+ ..|+..+.+..  .+.|+++||||+|+...+.          ++.+++.++++.++. +|+++||++
T Consensus        83 ~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~Sak~  150 (169)
T d1x1ra1          83 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAKD  150 (169)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred             cccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce----------eehhhHHHHHHHcCC-EEEEEcCCC
Confidence            999999999998 88888876653  5899999999999988765          889999999999998 999999998


Q ss_pred             CC-CHHHHHHHHHHHHcC
Q 028239          163 QQ-NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~-~v~~lf~~l~~~~~~  179 (211)
                      +. ||+++|..+++.+.+
T Consensus       151 ~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         151 PPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            86 999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=221.15  Aligned_cols=163  Identities=31%  Similarity=0.617  Sum_probs=141.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+|+|.+|+|||||+++|..+.+.+.+.+|....+ ......++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            578999999999999999999999999999999886544 5577788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||+++++||+.+ ..|+..+.... +..|+++||||+|+...+.          ++.+++++++++++. +|+++||++
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~e~~~~a~~~~~-~~~e~Sak~  149 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQ  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------cchHHHHHHHHHcCC-eEEEEecCC
Confidence            9999999999999 77777666554 6889999999999988765          899999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      |.||+++|.+|++.+++
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-38  Score=224.64  Aligned_cols=162  Identities=29%  Similarity=0.528  Sum_probs=146.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|.+|+|||||+++|+++.+.+.+.+|.+..+.....+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            58999999999999999999999999999999999888888899999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           86 SLISRASYENVLKKWMPELRRF---APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |+++++++..+ ..|+..+.+.   .+++|+++||||+|+...+.          ++.++++++++.++. +|+++||++
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------v~~~e~~~~~~~~~~-~~~e~Sak~  149 (171)
T d2erxa1          82 SITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAKL  149 (171)
T ss_dssp             ETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             ecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            99999999999 7777666543   26899999999999977654          888999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 028239          163 QQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~  179 (211)
                      |.||+++|+.|++.+.+
T Consensus       150 ~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         150 NHNVKELFQELLNLEKR  166 (171)
T ss_dssp             TBSHHHHHHHHHHTCCS
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999986643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6e-37  Score=219.55  Aligned_cols=165  Identities=29%  Similarity=0.610  Sum_probs=147.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+ +.....+...+..+.+++||+||++.+..+++.+++++|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3568999999999999999999999999888888875 555667788889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||+++++++..+ ..|...+.... ++.|+++|+||+|+...+.          ++.++++++++..+. +|+++||+
T Consensus        83 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  150 (169)
T d3raba_          83 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK  150 (169)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------cchhhhHHHHHHcCC-EEEEecCC
Confidence            99999999999998 67766666555 6899999999999887654          888999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.||+++|+++++.+.++
T Consensus       151 ~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         151 DNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhC
Confidence            9999999999999998763

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=221.00  Aligned_cols=163  Identities=29%  Similarity=0.548  Sum_probs=149.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|||||||+++|..+.+.+.+.++.+..+...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            46899999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||+++++||+.+ ..|+..+.+..  +++|++|||||+|+.....          +..+++..++++....+|+++||++
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sak~  150 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cchhHHHHHHHHhCCCEEEEEcCCC
Confidence            999999999999 77877766542  6899999999999987664          7888899999887656999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 028239          163 QQNVKAVFDTAIKVVL  178 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~  178 (211)
                      |.||+++|++|++.+.
T Consensus       151 g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999999875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=222.65  Aligned_cols=163  Identities=33%  Similarity=0.610  Sum_probs=145.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +..+||+|+|.+|||||||+++|..+.+...+.+|.++.....+.+++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            45599999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||+++++||..+ ..|...+....  .+.|++|||||+|+...+.          +..+++.++++.++. +|++|||+
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  150 (171)
T d2erya1          83 VFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAK  150 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             eeccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc----------chHHHHHHHHHHcCC-EEEEEcCC
Confidence            9999999999999 77877665443  5899999999999987665          888999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 028239          162 TQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~  178 (211)
                      +|.||+++|..|++.+.
T Consensus       151 ~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         151 IRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999999874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-37  Score=221.77  Aligned_cols=174  Identities=39%  Similarity=0.721  Sum_probs=153.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      ..||+++|++|+|||||+++|..+.+++.+.+|..+.....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999988888888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccc--ccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYL--ADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++++||+.+...|...+....+++|+++||||+|+.......  ......+.++.+++.+++++.+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998667777777777899999999999987543221  1222345589999999999999889999999999


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 028239          164 Q-NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~-~v~~lf~~l~~~~~~  179 (211)
                      . +++++|+.+++.++.
T Consensus       162 ~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhc
Confidence            8 599999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=220.90  Aligned_cols=162  Identities=29%  Similarity=0.582  Sum_probs=149.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|||||||+++|+++.+...+.++.++.+.....+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            46999999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ||++++.+|..+ ..|...+....  +++|++|||||+|+...+.          +..++++.+++..+. +|+++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  149 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc----------chHHHHHHHHHHcCC-eEEEECCCC
Confidence            999999999999 78877776544  6899999999999987654          788899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 028239          163 QQNVKAVFDTAIKVVL  178 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~  178 (211)
                      |.||+++|+.+++.+.
T Consensus       150 g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHc
Confidence            9999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-37  Score=220.21  Aligned_cols=164  Identities=31%  Similarity=0.574  Sum_probs=147.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+++|++|+|||||+++|..+.++..+.++.. +.....+.+++..+.+.+|||||++.|..+++.+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            3568999999999999999999999999888887774 555677889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|...+.+.. ...|++|||||+|+.+...          ++.++++++++..+. +|++|||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~~~SAk  150 (171)
T d2ew1a1          83 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK  150 (171)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             Eeeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------hhhhHHHHHHHhCCC-EEEEEccC
Confidence            99999999999999 67777776655 6799999999999887654          888999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.||+++|.++++.++.
T Consensus       151 tg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         151 ESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=220.29  Aligned_cols=161  Identities=30%  Similarity=0.523  Sum_probs=142.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|++|+|||||+++|+++.|++.+.||.+..+...+..++..+.+.+||++|++.+. .+..+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            589999999999999999999999999999999988888888889999999999999998775 4455788999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhh--CCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRF--APNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |+++++++..+ ..|...+...  .++.|+++||||+|+...+.          ++.+++++++++++. +|+++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~Saktg  148 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTG  148 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc----------CcHHHHHHHHHHhCC-eEEEEccccC
Confidence            99999999999 6665554433  26899999999999987654          899999999999998 9999999999


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 028239          164 Q-NVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~-~v~~lf~~l~~~~~~  179 (211)
                      + ||+++|..|++.+.+
T Consensus       149 ~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         149 EGNITEIFYELCREVRR  165 (168)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            8 599999999998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-36  Score=219.85  Aligned_cols=180  Identities=27%  Similarity=0.566  Sum_probs=156.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||+|+|+++||||||+++|..+.++..+.++.+..+ ...+.+++..+.+.+||+||++++..+|..+++++|++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4568999999999999999999999999999988886655 457788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||+++++++..+ ..|...+.+.. .+.|+++|+||+|+.+...          +..++...+++..+. +|+++||+
T Consensus        84 ~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk  151 (194)
T d2bcgy1          84 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSAL  151 (194)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------hhHHHHhhhhhccCc-ceEEEecC
Confidence            99999999999999 66666666544 7899999999999987665          888899999999887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCchhhHHHHhhhcccC
Q 028239          162 TQQNVKAVFDTAIKVVLQPPRRKEMMARKKRHRR  195 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~~~~~~~~~~~~~~  195 (211)
                      +|.||+++|+++++.+.+...+.......+++..
T Consensus       152 ~g~gi~e~f~~l~~~i~~~~~~~~~~~~~~k~~~  185 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKESMSQQNLNETTQKKED  185 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCHHHHHTTSGGGCC
T ss_pred             cCccHHHHHHHHHHHHHHHhhhcccCcccccccc
Confidence            9999999999999999876666655444444433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-36  Score=214.97  Aligned_cols=161  Identities=25%  Similarity=0.554  Sum_probs=146.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      +.+||+|+|.++||||||+++|..+.+...+.+|....+ ......++..+.+.+||++|++.+..++..+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            579999999999999999999999999999998886555 4566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++++|..+ ..|...+.... ++.|+++||||+|+.+.+.          ++.++++++++..+. +|+++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~  150 (167)
T d1z0ja1          83 VYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKN  150 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             EeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------hhHHHHHHHHHHcCC-EEEEEecCC
Confidence            9999999999999 77777776655 7899999999999987654          889999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028239          163 QQNVKAVFDTAIKVV  177 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~  177 (211)
                      |.||+++|.+|++.+
T Consensus       151 ~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         151 AININELFIEISRRI  165 (167)
T ss_dssp             TBSHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999999987

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=215.68  Aligned_cols=162  Identities=31%  Similarity=0.580  Sum_probs=145.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+|+|++++|||||+++|.++.++..+.++... .......+++..+.+.+||+||++.+..++..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            4689999999999999999999999998888887754 445677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||+++.+++..+ ..|...+.... +..|++++|||+|+.....          +..++++.+++..+. +|+++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sakt  150 (166)
T d1z0fa1          83 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKT  150 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------cHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 77777777655 6899999999999977654          788899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 028239          163 QQNVKAVFDTAIKVVL  178 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~  178 (211)
                      |.||+++|.++++.++
T Consensus       151 g~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         151 GENVEDAFLEAAKKIY  166 (166)
T ss_dssp             CTTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999999874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=216.56  Aligned_cols=161  Identities=35%  Similarity=0.603  Sum_probs=149.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      .+||+++|+++||||||+++|+++.+++.+.++.+..+...+..++..+.+.+||++|++.+...++.+++.++++++||
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~   82 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceee
Confidence            58999999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      |++++.+|+.+ ..|+..+.+..  +++|+++|+||+|+....           ++.++++++++.++. +|+++||++|
T Consensus        83 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~e~Sak~g  149 (166)
T d1ctqa_          83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VESRQAQDLARSYGI-PYIETSAKTR  149 (166)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTTC
T ss_pred             cccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc-----------ccHHHHHHHHHHhCC-eEEEEcCCCC
Confidence            99999999998 89999888754  579999999999986543           788899999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      +||+++|.++++.+.+
T Consensus       150 ~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         150 QGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999998854

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=214.40  Aligned_cols=160  Identities=31%  Similarity=0.542  Sum_probs=143.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF   85 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   85 (211)
                      +||+|+|++|||||||+++|.++.+...+.++.+ .........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999999888875 444566677888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           86 SLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      |++++.++..+ ..|+..+.... ++.|+++||||+|+.+.+.          +..+++.++++.++. +|+++||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk~g~  148 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGY  148 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------hhHHHHHHHHHHcCC-EEEEecCCCCc
Confidence            99999999999 77777666544 7899999999999987654          788899999999998 99999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 028239          165 NVKAVFDTAIKVVL  178 (211)
Q Consensus       165 ~v~~lf~~l~~~~~  178 (211)
                      ||+++|++|++++.
T Consensus       149 ~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         149 NVKQLFRRVAAALP  162 (164)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999999999874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-36  Score=215.00  Aligned_cols=164  Identities=30%  Similarity=0.582  Sum_probs=142.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+|+|++|+|||||++++.++.+...+.++.. ..........+..+.+.+||++|++.+...+..+++.+|+++
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            3568999999999999999999999998888877764 444556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++++|..+ ..|+..+.... +++|++||+||+|+...+.          +..+++..+++..+. +|+++||+
T Consensus        81 lv~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------~~~~~~~~~a~~~~~-~~~e~Sa~  148 (173)
T d2a5ja1          81 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK  148 (173)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------hHHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999999 77777776665 7899999999999877654          788899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.||+++|.++++.+.+
T Consensus       149 tg~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         149 TACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=212.66  Aligned_cols=162  Identities=31%  Similarity=0.573  Sum_probs=146.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|++|+|||||+++|..+.+++.+.++.+..+ .......+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999999888886555 45677888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||+++.+++..+ ..|...+.+.. ++.|+++|+||+|+...+.          ++.++++++++..+. +|+++||++|
T Consensus        86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~SAk~g  153 (170)
T d1r2qa_          86 YDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTS  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------ccHHHHHHHHHhcCC-EEEEeeCCCC
Confidence            999999999999 66766665554 7999999999999987765          899999999999987 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .||+++|++|++.+.+
T Consensus       154 ~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         154 MNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=215.53  Aligned_cols=165  Identities=31%  Similarity=0.557  Sum_probs=147.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      +..+||+|+|.+|||||||+++|..+.+.+.+.++..... ...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            4568999999999999999999999999998888876554 456778889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||.++++++..+ ..|...+.... +++|+++|+||+|+.....          +...++.++++..+. +|+++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak  150 (174)
T d2bmea1          83 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  150 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------hhhhHHHHHHHhCCC-EEEEeeCC
Confidence            99999999999999 77777776655 6899999999999876654          788888999999987 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 028239          162 TQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~  180 (211)
                      +|.||+++|.++++.++++
T Consensus       151 ~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         151 TGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHH
Confidence            9999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=221.70  Aligned_cols=162  Identities=29%  Similarity=0.505  Sum_probs=138.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      .+||+++|++++|||||+++|.++.+...+.+|.+ +.....+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999888876 44456777888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      ||+++++||+.+ ..|+..+.+..+++|+++||||+|+...+.            .+++..+++..+. +|+++||++|.
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~------------~~~~~~~~~~~~~-~~~e~Sak~~~  148 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKSNY  148 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC------------TTTSHHHHSSCSS-EEEEEBTTTTB
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh------------hhHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999999 888888877778999999999999976542            2344567777777 99999999999


Q ss_pred             CHHHHHHHHHHHHcCCc
Q 028239          165 NVKAVFDTAIKVVLQPP  181 (211)
Q Consensus       165 ~v~~lf~~l~~~~~~~~  181 (211)
                      ||+++|.+|++.++..+
T Consensus       149 ~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         149 NFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TTTHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHccCC
Confidence            99999999999997644

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-36  Score=214.28  Aligned_cols=164  Identities=29%  Similarity=0.599  Sum_probs=117.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      .+-+||+|+|.+++|||||+++|.++.++..+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            4568999999999999999999999998888877775 445677889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||++++.++..+ ..|...+.... ++.|+++|+||.|+...+.          ...+++..++...+. +|+++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  151 (173)
T d2fu5c1          84 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  151 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------cHHHHHHHHHHhcCC-EEEEEeCC
Confidence            99999999999999 77777776554 7899999999999987654          677888899999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|+||+++|++|++.+..
T Consensus       152 ~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         152 ANINVENAFFTLARDIKA  169 (173)
T ss_dssp             --CCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998843

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=212.38  Aligned_cols=164  Identities=34%  Similarity=0.589  Sum_probs=142.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ++.+||+|+|++|||||||+++|.++.+...+.++.. ......+.+++..+.+.+||++|++.|...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            3568999999999999999999999998888777664 445667788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      +|||+++++||..+ ..|+..+.... +++|++|||||+|+.+.+.          ...+....+.+..+. +|+++||+
T Consensus        82 ~v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  149 (175)
T d2f9la1          82 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  149 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeeccccccc----------chHHHHHHhhcccCc-eEEEEecC
Confidence            99999999999999 77888777766 6899999999999987654          566777778887776 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 028239          162 TQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~  179 (211)
                      +|.|++++|+++++.+.+
T Consensus       150 ~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         150 DSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999998854

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=207.14  Aligned_cols=163  Identities=33%  Similarity=0.602  Sum_probs=134.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-ee-eeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-VF-DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t-~~-~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      +..+||+|+|++++|||||+++|+.+.+...+.++ .+ +.....+..++..+.+.+|||||++.+..++..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            35689999999999999999999999876554444 33 44456788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ++|||+++++++..+ ..|...+.... +..|+++|+||+|+.....          ++.+++.++++..+. +|+++||
T Consensus        84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa  151 (170)
T d2g6ba1          84 LLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSA  151 (170)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred             EEEecCCcccchhhh-hhhhhhhhhccCCCceEEEEEeeechhhccc----------ccHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999999 55555554444 6889999999999987765          889999999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 028239          161 KTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~  178 (211)
                      ++|.||+++|++|++.+.
T Consensus       152 k~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         152 KTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHcC
Confidence            999999999999998874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-35  Score=209.08  Aligned_cols=165  Identities=32%  Similarity=0.584  Sum_probs=146.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+++|++|+|||||+++|.++.+.+.+.+|.+..+ .+.+..++..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            468999999999999999999999999999999887554 5678889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||++++.+|..+ ..|...+.... ...|+++++||+|+.+...       .+.++.++++++++..+. +|+++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~-------~~~v~~~~~~~~~~~~~~-~~~e~Sak~  152 (170)
T d1ek0a_          82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEeCCcccchhhh-hhhhhhhccccccccceeeeecccccccccc-------hhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 77776655544 6899999999999865422       234888999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 028239          163 QQNVKAVFDTAIKVVL  178 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~  178 (211)
                      |.||+++|..|++.+.
T Consensus       153 g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         153 GENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTHHHHHHHHHTTSC
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999987763

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-35  Score=212.08  Aligned_cols=165  Identities=32%  Similarity=0.596  Sum_probs=129.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EE-ECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VA-VDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+||+++|++|||||||+++|.++.+...+.++.+...... .. .+...+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            58999999999999999999999999888888875554433 22 34456778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEe
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIEC  158 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (211)
                      |||++++.+|..+ ..|+..+....     +++|+++|+||+|+.+.+.         .++.++++++++.++..+|+++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~e~  151 (175)
T d1ky3a_          82 VYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLT  151 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEEE
T ss_pred             Eeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhc---------chhHHHHHHHHHHcCCCeEEEE
Confidence            9999999999998 88888776432     4789999999999976533         3778899999999987799999


Q ss_pred             cCCCCCCHHHHHHHHHHHHcCC
Q 028239          159 SSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       159 sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ||++|.||+++|++|++.++++
T Consensus       152 SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         152 SAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999988653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=206.32  Aligned_cols=165  Identities=28%  Similarity=0.592  Sum_probs=147.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ..+||+|+|.+++|||||+++|.++.+...+.++.... ....+.+++..+.+.+||+||++++..++..++.++|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988888877544 45677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSK  161 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (211)
                      |||++++.++..+ ..|+..+.+..  ...|+++++||.|.....           +...+++++++..+. +|+++||+
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----------v~~~~~~~~~~~~~~-~~~e~Sa~  152 (177)
T d1x3sa1          86 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  152 (177)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc-----------ccHHHHHHHHHHCCC-EEEEEeCC
Confidence            9999999999998 88888887654  478999999999976543           788999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCch
Q 028239          162 TQQNVKAVFDTAIKVVLQPPR  182 (211)
Q Consensus       162 ~~~~v~~lf~~l~~~~~~~~~  182 (211)
                      +|+||+++|+++++.+++.+.
T Consensus       153 tg~gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         153 TCDGVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHccCcc
Confidence            999999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=206.12  Aligned_cols=164  Identities=36%  Similarity=0.671  Sum_probs=141.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ...+||+|+|+++||||||+++|..+.+...+.+|.+... .....+++..+.+.+||++|...+...+...+..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3567999999999999999999999999998888876554 566778899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      ++||.+++.++..+ ..|++.+....     ++.|+++||||+|+.+..           ++.+++++++++.+..+|++
T Consensus        84 ~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-----------v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          84 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhcc-----------CcHHHHHHHHHHcCCCeEEE
Confidence            99999999999998 78888776542     478999999999986532           88899999999987669999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcC
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +||++|.||+++|+++++.++.
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=215.60  Aligned_cols=164  Identities=40%  Similarity=0.628  Sum_probs=142.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC----------CeEEEEEEEeCCCCcCcccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD----------GSIVNLGLWDTAGQEDYSRLRP   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~l~l~D~~G~~~~~~~~~   72 (211)
                      ...+||+|+|++|+|||||+++|+++.+.+.+.++....+ ...+.++          ...+.+.+||++|++.|..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            3568999999999999999999999999888877775444 3344333          2457899999999999999999


Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI  150 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (211)
                      .+++++|++|+|||++++.+++.+ ..|+..+....  ++.|++||+||.|+...+.          ++.+++.++++++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~e~~~~~~~~  151 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKY  151 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc----------chHHHHHHHHHHc
Confidence            999999999999999999999999 78887766543  5789999999999987665          8999999999999


Q ss_pred             CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          151 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +. +|+++||++|.||+++|+++++.+.+
T Consensus       152 ~~-~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         152 GI-PYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             TC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            97 99999999999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=207.96  Aligned_cols=161  Identities=25%  Similarity=0.436  Sum_probs=135.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC---CcCccccccccccCCc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAG---QEDYSRLRPLSYRGAD   79 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G---~~~~~~~~~~~~~~~d   79 (211)
                      ..+||+++|++|+|||||+++|.+..+.  ....++..+.+...+.+++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            5799999999999999999999987643  3333334566777888999999999999775   4444  5566889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEE
Q 028239           80 IFVLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIE  157 (211)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (211)
                      ++|+|||++++.++..+ ..|...+....  +++|+++||||+|+...+.          ++.++++++++.+++ +|++
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEE
Confidence            99999999999999999 78888776543  6899999999999987654          889999999999998 9999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHcC
Q 028239          158 CSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       158 ~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      +||++|.||+++|+.|++.+..
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999998743

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=205.59  Aligned_cols=161  Identities=34%  Similarity=0.670  Sum_probs=138.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      -+||+++|.+++|||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999888886444 57788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||++++++++.+ ..|...+.... ...|++++++|.|+....           ...+++..+++.++. +|+++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKND  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhh-----------hhHHHHHHHHHhcCC-eEEEECCCCC
Confidence            999999999998 66666666555 678899999999987654           678899999999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 028239          164 QNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       164 ~~v~~lf~~l~~~~~~  179 (211)
                      .||+++|++|++.+.+
T Consensus       149 ~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998854

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.3e-34  Score=206.38  Aligned_cols=168  Identities=32%  Similarity=0.556  Sum_probs=146.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      -+||+|+|.+|||||||+++|+++.+...+.+|.+. .........+..+.+.+||++|+..+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            379999999999999999999999999999988854 4456777788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      ||.++..++..+ ..|+..+....     .++|+++|+||+|+.+.+           +..++..+++...+..+|++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEECB
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEEEc
Confidence            999999999998 88887776542     368999999999987644           6778888888777666999999


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCchhhH
Q 028239          160 SKTQQNVKAVFDTAIKVVLQPPRRKE  185 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~~~~~~~  185 (211)
                      |++|.||+++|+++++.+++++.+.+
T Consensus       150 ak~~~gI~e~f~~l~~~i~~~~~~~~  175 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNALKQETEVE  175 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhcccccc
Confidence            99999999999999999987555443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-34  Score=203.61  Aligned_cols=165  Identities=20%  Similarity=0.317  Sum_probs=139.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      ..+||+++|++++|||||+++++++.+.. +.++....+...+.+++..+.+.+||++|+..+.     +++.+|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            46999999999999999999999999855 4566677777888999999999999999987643     68899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC----CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      ||+++++||+.+ ..|++.+....    +++|+++|+||.|+....        .+.++.+++..++...+..+|++|||
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS--------CCCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhh--------hcchhHHHHHHHHHHhCCCeEEEeCC
Confidence            999999999998 88988876543    578999999999875432        23478888999987766569999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCchhh
Q 028239          161 KTQQNVKAVFDTAIKVVLQPPRRK  184 (211)
Q Consensus       161 ~~~~~v~~lf~~l~~~~~~~~~~~  184 (211)
                      ++|.||+++|..+++.+...+.+.
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999997755443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-33  Score=200.49  Aligned_cols=158  Identities=29%  Similarity=0.577  Sum_probs=139.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCCcCccc-cccccccCCcEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGSIVNLGLWDTAGQEDYSR-LRPLSYRGADIFV   82 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i   82 (211)
                      +.+||+++|++|||||||+++|..+.++..+.++.+... .....+....+.+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999998888886555 56778889999999999999877654 5677899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecC
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSS  160 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (211)
                      +|||++++++|+.+ ..|+..+.+..  +++|++|||||+|+.+.+.          ++.++++++++.++. +|+++||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc----------hhHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999998 88888887654  6899999999999987654          899999999999998 9999999


Q ss_pred             CC---CCCHHHHHHHHH
Q 028239          161 KT---QQNVKAVFDTAI  174 (211)
Q Consensus       161 ~~---~~~v~~lf~~l~  174 (211)
                      ++   ++||+++|.+|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   569999998873

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.98  E-value=9.8e-33  Score=196.49  Aligned_cols=162  Identities=20%  Similarity=0.269  Sum_probs=125.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +++||+++|++++|||||+++|..+.+...+.+|.+..+. .+..++  +.+.+||+||++.+...|..++..++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            3689999999999999999999999998888888765443 345555  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCC
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQ  163 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (211)
                      ||+++.+++......|...+.... +++|+++|+||.|+.+....       +.+.......+++..+. +++++||++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~-------~~i~~~~~~~~~~~~~~-~~~e~Sa~~g  149 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE-------KELIEKMNLSAIQDREI-CCYSISCKEK  149 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH-------HHHHHHHHHHHHHhCCC-EEEEEeCcCC
Confidence            999999999998444444444333 78999999999998764310       00111111122223333 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028239          164 QNVKAVFDTAIKVV  177 (211)
Q Consensus       164 ~~v~~lf~~l~~~~  177 (211)
                      +|++++|++|++.+
T Consensus       150 ~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         150 DNIDITLQWLIQHS  163 (164)
T ss_dssp             TTHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHcc
Confidence            99999999999854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=9.2e-31  Score=186.28  Aligned_cols=159  Identities=16%  Similarity=0.230  Sum_probs=123.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++  +.+.+||+||++.++..+..+++.++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee-eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4689999999999999999999887763 4445544332 3345555  6778999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH--HHhC--CceEEEec
Q 028239           85 FSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR--KQIG--AAAYIECS  159 (211)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~s  159 (211)
                      ||+++..++.+....|...+.... .+.|++||+||+|+.+...            ..+.....  ....  ..+++++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS------------CNAIQEALELDSIRSHHWRIQGCS  144 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC------------HHHHHHHHHhhhhhcCCCEEEEEE
Confidence            999999999988566666555433 6899999999999976532            22222221  1111  23789999


Q ss_pred             CCCCCCHHHHHHHHHHHHcC
Q 028239          160 SKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       160 a~~~~~v~~lf~~l~~~~~~  179 (211)
                      |++|+||+++|++|++.+..
T Consensus       145 a~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         145 AVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHc
Confidence            99999999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.7e-31  Score=192.02  Aligned_cols=158  Identities=20%  Similarity=0.249  Sum_probs=120.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ++.+.+||+++|++|||||||+++|.++.+...++ +.+ .....+...+  +.+.+||++|++.++..+..+++.+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~~-~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQG-FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETT-EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-eee-eeEEEeccCC--eeEeEeeccccccchhHHHHHhhcccee
Confidence            45678999999999999999999999988743322 111 1223444455  6788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH-----HHHhCCce
Q 028239           82 VLAFSLISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL-----RKQIGAAA  154 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  154 (211)
                      ++|||+++..++.++ ..|...+....  .++|++||+||+|+.....            ..+..+.     ++. ...+
T Consensus        88 i~v~d~~d~~s~~~~-~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~  153 (176)
T d1fzqa_          88 IYVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRD-RVWQ  153 (176)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCS-SCEE
T ss_pred             EEeeccccccchhhh-hhhhhhhhhhhccCCCeEEEEEEecccccccc------------HHHHHHHHHHHHHHh-cCCE
Confidence            999999999999998 55554444333  5899999999999976532            2222211     112 2247


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHH
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ++++||++|+|++++|+||++.+
T Consensus       154 ~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         154 IQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcC
Confidence            99999999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.6e-31  Score=193.25  Aligned_cols=159  Identities=16%  Similarity=0.225  Sum_probs=117.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIF   81 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   81 (211)
                      ...+.+||+++|++|||||||+++|.++.+... .+|.+.. .......+  +.+.+||+||++.++..+..++..+|++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE-EEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            567889999999999999999999988765433 2333222 22334455  6778999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHH-HhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH-----HHHhCCce
Q 028239           82 VLAFSLISRASYENVLKKWMPE-LRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL-----RKQIGAAA  154 (211)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~-~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  154 (211)
                      ++|||+++..++.+. ..|+.. +.... .+.|++||+||+|+.+.            .+..++.+.     +...+ .+
T Consensus        89 i~v~d~~d~~s~~~~-~~~l~~~~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~  154 (182)
T d1moza_          89 IFVVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRS-WS  154 (182)
T ss_dssp             EEEEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSC-EE
T ss_pred             EEEeeecccccchhH-HHHHHHHHHhhccCCcceEEEEEeeccccc------------cCHHHHHHHHHHHHHhhCC-CE
Confidence            999999999999988 555444 43333 58999999999999764            222332221     12223 37


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHc
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      |++|||++|+||+++|++|++.+.
T Consensus       155 ~~e~SA~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         155 IVASSAIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             EEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999998874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=5.2e-31  Score=189.05  Aligned_cols=162  Identities=17%  Similarity=0.188  Sum_probs=118.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      .+.+||+++|+++||||||+++|.++.+.... +|.+.. ........  +.+.+||+||++.++..+..+++.++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFN-VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEE-EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeee-EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            56799999999999999999999987754332 222211 22333344  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      |||+++.+++..+...|...+.... .+.|+++++||+|+.+....       ..+...++.+.++..+ .+++++||++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~-~~~~e~SA~t  157 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HEIQEKLGLTRIRDRN-WYVQPSCATS  157 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSC-EEEEECBTTT
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH-------HHHHHHHHHHHHHhCC-CEEEEeeCCC
Confidence            9999999999998444444444333 68999999999999764320       0011111111122223 3789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028239          163 QQNVKAVFDTAIKVV  177 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~  177 (211)
                      |+||+++|++|.+.+
T Consensus       158 g~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         158 GDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHhc
Confidence            999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=3.6e-29  Score=176.59  Aligned_cols=158  Identities=15%  Similarity=0.179  Sum_probs=119.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEE
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (211)
                      +||+++|++|||||||+++|.++.+...+..+...    ....+...+.+.+||++|...+...+..++..+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            69999999999999999999998876654443322    22334455788899999999998888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhh-hC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCC
Q 028239           87 LISRASYENVLKKWMPELRR-FA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQ  164 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (211)
                      .+++.++..+ ..|...+.. .. ...|+++++||.|+.+...       .+.+.......+++..+. +++++||++|+
T Consensus        77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SAktg~  147 (160)
T d1r8sa_          77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGD  147 (160)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTB
T ss_pred             ecChHHHHHH-HHHHHHHHHhhcccCceEEEEeeccccccccc-------HHHHHHHHHHHHHhhCCC-EEEEeECCCCC
Confidence            9999999998 455444443 32 5789999999999876532       001122222223333444 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028239          165 NVKAVFDTAIKVV  177 (211)
Q Consensus       165 ~v~~lf~~l~~~~  177 (211)
                      ||+++|++|++++
T Consensus       148 gi~e~~~~l~~~l  160 (160)
T d1r8sa_         148 GLYEGLDWLSNQL  160 (160)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3e-26  Score=164.66  Aligned_cols=158  Identities=17%  Similarity=0.122  Sum_probs=119.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc--------ccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR--------PLS   74 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~   74 (211)
                      +.-.|+|+|.+|+|||||+++|++...  .....+++...........+  ..+.+|||||.......+        ...
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            445799999999999999999998763  33444455445555555666  456699999986554332        234


Q ss_pred             ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCce
Q 028239           75 YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAA  154 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (211)
                      ++++|++++|+|++++.+..+  ..|.+.++....+.|+++|+||+|+...             ..+....+.+..+...
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~  146 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-------------PEEAMKAYHELLPEAE  146 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-------------HHHHHHHHHHTSTTSE
T ss_pred             cccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-------------HHHHHHHHHhhcccCc
Confidence            678999999999988766554  5667777776678999999999998653             2234455666666668


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          155 YIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ++++||++|.|+++++++|++.+.+
T Consensus       147 ~~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         147 PRMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             eEEEecCCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999999987743

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=7.1e-26  Score=160.67  Aligned_cols=165  Identities=14%  Similarity=0.181  Sum_probs=122.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   83 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   83 (211)
                      ++.+||+++|.+|||||||+++|.++.+.... ++... .......++  +.+.+||.+|.+.+...+...+..++++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce-eeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            44599999999999999999999999876543 22222 222334445  667799999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCC
Q 028239           84 AFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKT  162 (211)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (211)
                      ++|+.+..++......+...+.... ...|+++++||.|+.....       ...+....+..++...+ .+|+++||++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-------~~~i~~~~~~~~~~~~~-~~~~~~SA~~  150 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRK-WQIFKTSATK  150 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSC-EEEEECCTTT
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-------HHHHHHHHHHHHHhcCC-CEEEEEeCCC
Confidence            9999998888887454555444433 6899999999999976532       00111122222333334 4899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 028239          163 QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       163 ~~~v~~lf~~l~~~~~~~  180 (211)
                      |.||+++|++|++.+.++
T Consensus       151 g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         151 GTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999987543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.4e-25  Score=160.74  Aligned_cols=158  Identities=15%  Similarity=0.206  Sum_probs=114.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+.+||+|+|.+|||||||++++.++.+.......  ..........+  +.+.+||+++.+..+..+...+..+++++
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI--GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS--CSSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc--ceeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            356799999999999999999999998865432222  12233444455  66779999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHh-hhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh----CCceEE
Q 028239           83 LAFSLISRASYENVLKKWMPELR-RFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI----GAAAYI  156 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~-~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (211)
                      +|+|.++..++... ..+..... ... .+.|+++|+||+|+....            ...+..+.....    ...+++
T Consensus        88 ~v~d~~d~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~  154 (177)
T d1zj6a1          88 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQWHIQ  154 (177)
T ss_dssp             EEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCEEEE
T ss_pred             eecccccccchhhh-hhhhhhhhhcccccceEEEEEEEcccccccC------------cHHHHHHHHHHHhhHhcCCEEE
Confidence            99999999999887 33333333 222 689999999999987653            222222222111    224899


Q ss_pred             EecCCCCCCHHHHHHHHHHHH
Q 028239          157 ECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ++||++|+|++++|++|.+++
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=6.8e-26  Score=164.65  Aligned_cols=167  Identities=15%  Similarity=0.165  Sum_probs=116.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|..|||||||+++|....++..+..      ...+...+  +.+++||++|++.+++.|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~------~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV------ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE------EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE------EEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            479999999999999999999988776544321      12233444  7788999999999999999999999999999


Q ss_pred             EECCChhhH----------HHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccc-----cCCccccHHHHHH---
Q 028239           85 FSLISRASY----------ENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADH-----VGSNVITTAQGEE---  145 (211)
Q Consensus        85 ~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~---  145 (211)
                      ||+++.+++          .+....|...+.... ...|+++++||+|+...+....+.     .........++..   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887765          223355666665544 689999999999975433211110     0111122222211   


Q ss_pred             --HHHHh-----CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          146 --LRKQI-----GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       146 --~~~~~-----~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                        +....     +.+++++|||+++.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              11111     22467899999999999999999887654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.8e-25  Score=162.97  Aligned_cols=170  Identities=15%  Similarity=0.103  Sum_probs=124.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +++||+++|..+||||||+++|..+.+  .+.||.+..+. .+.  ...+.+++||++|++.++..|..+++.++++++|
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY-PFD--LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE-EEE--CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE-EEe--ccceeeeeccccccccccccccccccccceeeEe
Confidence            579999999999999999999988876  35677764432 233  3347788999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCcccc------ccccCCccccHHHHHHHH
Q 028239           85 FSLISRAS----------YENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYL------ADHVGSNVITTAQGEELR  147 (211)
Q Consensus        85 ~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~  147 (211)
                      ||.++..+          +.+....|...+.... .+.|+++++||.|+...+...      .++......+...+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            99877542          3333388888887655 799999999999986433221      111122223333333332


Q ss_pred             HH----h-----CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          148 KQ----I-----GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       148 ~~----~-----~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ..    .     ..+.+++|||++|.||+++|+.+.+.+++
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            21    1     12357899999999999999999888764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.9e-25  Score=154.26  Aligned_cols=150  Identities=21%  Similarity=0.291  Sum_probs=113.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc--------cccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL--------RPLSYR   76 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~   76 (211)
                      +||+++|.+|||||||+++|++...  .....++..+.....+...+.  .+.+||+||.......        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCc--eeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998763  344445555555566667774  5669999997554432        223468


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|++++++|..+..++... ..|...+.....+.|+++|+||+|+......         .         .+....+++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~---------~---------~~~~~~~~~  140 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG---------M---------SEVNGHALI  140 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE---------E---------EEETTEEEE
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHHH---------H---------HHhCCCcEE
Confidence            89999999999998887776 6666666665578999999999998765321         0         112234899


Q ss_pred             EecCCCCCCHHHHHHHHHHHH
Q 028239          157 ECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      ++||++|.|+++++++|.+.+
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999998864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-23  Score=148.70  Aligned_cols=151  Identities=18%  Similarity=0.261  Sum_probs=112.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEEC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSL   87 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   87 (211)
                      ||+++|++|||||||+++|.++.+.. +.+|..... ......+  +.+.+||++|...+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS-EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE-EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE-EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            89999999999999999999988753 344443222 2333334  5566999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHH-----------HHhCCce
Q 028239           88 ISRASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELR-----------KQIGAAA  154 (211)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  154 (211)
                      ++..++... ..|........  .+.|+++++||.|+....            ...+..+..           ......+
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~  144 (166)
T d2qtvb1          78 ADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNAV------------SEAELRSALGLLNTTGSQRIEGQRPVE  144 (166)
T ss_dssp             TCGGGHHHH-HHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------------CHHHHHHHHTCSSCCC---CCSSCCEE
T ss_pred             cchhhhhhh-hHHHHhhhhhhccCCceEEEEeccccccccC------------CHHHHHHHhhhhhhhHHHhhcccCCCE
Confidence            999998888 44444443333  589999999999987642            222222111           1112247


Q ss_pred             EEEecCCCCCCHHHHHHHHHH
Q 028239          155 YIECSSKTQQNVKAVFDTAIK  175 (211)
Q Consensus       155 ~~~~sa~~~~~v~~lf~~l~~  175 (211)
                      +++|||++|+||+++|++|.+
T Consensus       145 ~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         145 VFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHhC
Confidence            899999999999999999975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=6.7e-24  Score=152.60  Aligned_cols=159  Identities=19%  Similarity=0.225  Sum_probs=113.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEE
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   82 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   82 (211)
                      ..+..||+++|.+|||||||+++|.++.+...+ ++.... ...+.+++.  .+.+||+.++..+...+...++..++++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIAGM--TFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETTE--EEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEeccc--ccccccccchhhhhhHHhhhhcccceee
Confidence            357899999999999999999999998875543 232222 234566664  4569999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-----------
Q 028239           83 LAFSLISRASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-----------  150 (211)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (211)
                      +++|+++...+......+........ .+.|+++++||.|+...            +...+..+.....           
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~  153 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  153 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc------------CCHHHHHHHHhhcccchhhhhhhH
Confidence            99999999998887455555444333 78999999999998664            2333333322211           


Q ss_pred             -----CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          151 -----GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       151 -----~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                           ...+++++||++|+|++++|+||++++
T Consensus       154 ~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         154 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                 113689999999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.8e-24  Score=156.09  Aligned_cols=169  Identities=15%  Similarity=0.153  Sum_probs=110.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|.+|||||||+++|.   +...+.||.+... ..+...+  +.+++||++|++.++..|..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~-~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE-YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE-EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE-EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   4556677776332 3345555  6778999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccc------cccCCccccHHHHHHHH
Q 028239           85 FSLISRAS----------YENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLA------DHVGSNVITTAQGEELR  147 (211)
Q Consensus        85 ~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~~~  147 (211)
                      ||.++..+          +.+....|...+.... .++|++|++||+|+........      ++..-...+...+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987543          3444244444444433 6899999999999864322111      11111112333343332


Q ss_pred             HHh----------CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          148 KQI----------GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       148 ~~~----------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ...          ..+.+++|||+++.||+++|+.+.+.+++
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            221          11356789999999999999998877754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=7.5e-24  Score=152.24  Aligned_cols=157  Identities=17%  Similarity=0.127  Sum_probs=102.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc----c---ccccccCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR----L---RPLSYRGA   78 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~---~~~~~~~~   78 (211)
                      .|+++|.+|||||||+|+|++....  .....+....+.  .........+++||+||......    .   ....+..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec--eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            5999999999999999999876532  221222222222  22222234567999999543221    1   11236789


Q ss_pred             cEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           79 DIFVLAFSLISRA--SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        79 d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      +++++++|.....  +.... ..|+........+.|+++|+||+|+...+.            .++..+.....+. +++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~------------~~~~~~~~~~~~~-~~~  146 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEA------------VKALADALAREGL-AVL  146 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHH------------HHHHHHHHHTTTS-CEE
T ss_pred             hhhhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHHH------------HHHHHHHHHhcCC-eEE
Confidence            9999999986543  22222 333333332224689999999999976532            2333444455555 899


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      .+||++|.|+++|++.|.+.+...
T Consensus       147 ~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         147 PVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999998888553

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=8.2e-23  Score=145.53  Aligned_cols=154  Identities=22%  Similarity=0.220  Sum_probs=103.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---------ccccccc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---------LRPLSYR   76 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---------~~~~~~~   76 (211)
                      +|+|+|++|+|||||+++|++...  .....+++.......+...+  +.+.+||++|......         ....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            699999999999999999998663  33444444444445555555  5567999999533321         1222467


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEE
Q 028239           77 GADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYI  156 (211)
Q Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (211)
                      .+|+++++.|.+.......  ..+...+...  +.|+++|+||+|+....            ..+...++. +.+..+++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~~~~~~~~~-~~~~~~~i  142 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------EREVKPELY-SLGFGEPI  142 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------HHHTHHHHG-GGSSCSCE
T ss_pred             cCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------hhHHHHHHH-hcCCCCeE
Confidence            8999999999887665554  4666666665  78999999999986532            222222332 33444789


Q ss_pred             EecCCCCCCHHHHHHHHHHHHcCC
Q 028239          157 ECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       157 ~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      ++||++|.|+++++++|.+.+.+.
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999999887543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=8.8e-23  Score=147.21  Aligned_cols=157  Identities=22%  Similarity=0.208  Sum_probs=106.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc------------
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL------------   70 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------------   70 (211)
                      ..+||+|+|.+|+|||||+|+|++...  ...+..+........+.+++..  +.++|+||.......            
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhHH
Confidence            469999999999999999999998763  3445555555555666777754  559999996443322            


Q ss_pred             ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHH-HHHH
Q 028239           71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEE-LRKQ  149 (211)
Q Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (211)
                      ....++.+|++++|+|++.+..-+.  ..+...+...  +.|+|+|+||+|+.....          ....+..+ +.+.
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~~----------~~~~~~~~~~~~~  150 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  150 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcchh----------hhhhhHHHHHHHH
Confidence            1223567999999999987655444  4555555555  799999999999876543          22222222 2222


Q ss_pred             ---hCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          150 ---IGAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       150 ---~~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                         .+..+++++||++|.|+++|++.|.+.+
T Consensus       151 ~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         151 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence               2345899999999999999999997765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=1.1e-22  Score=146.00  Aligned_cols=162  Identities=19%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------eeeeEEEEECCeEEEEEEEeCCCCcCccccccccc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------DNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSY   75 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~   75 (211)
                      -+.++|+++|.+++|||||+|+|++.........+..        ......+..++  +.+.++|+||+..|.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            3578999999999999999999997542221111111        11112333455  5566999999998888777788


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh---CC
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI---GA  152 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  152 (211)
                      ..+|++++|+|+++....+.. . ....+...  ++|+++|+||+|+......        ....+....+.+..   ..
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~-~-~~~~~~~~--~~p~iiv~NKiD~~~~~~~--------~~~~~~~~~~~~~~~~~~~  148 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTG-E-HMLILDHF--NIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTHNLKN  148 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-H-HHHHHHHT--TCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSSSGGG
T ss_pred             hhccccccccccccccchhhh-h-hhhhhhhc--CCcceeccccccccCHHHH--------HHHHHHHHHHHHHhhcCCC
Confidence            999999999999987655543 2 33344444  7999999999998764320        00111222222222   12


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      .+++++||++|+|++++++.|.+.+-+
T Consensus       149 ~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         149 SSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            489999999999999999999987743

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=5.9e-23  Score=144.63  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=104.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc--c-------ccccc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR--L-------RPLSY   75 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--~-------~~~~~   75 (211)
                      +||+++|.+|+|||||+|+|++..  ......++........+...+  ..+.+||+||......  .       ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999999865  344444555555556667777  4566999999532111  1       11125


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceE
Q 028239           76 RGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAY  155 (211)
Q Consensus        76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (211)
                      ..+|++++|+|++++...+.. . +...+    ...++++++||.|+.+..            ..++..... ... .++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~-~-~~~~~----~~~~~i~~~~k~d~~~~~------------~~~~~~~~~-~~~-~~~  138 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNKL-GTD-RHM  138 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHHH-TCS-TTE
T ss_pred             HhCCEEEEEEeCCCCcchhhh-h-hhhhc----ccccceeeeeeccccchh------------hhHHHHHHh-CCC-CcE
Confidence            679999999999998776654 2 22222    367899999999997653            222222211 122 489


Q ss_pred             EEecCCCCCCHHHHHHHHHHH
Q 028239          156 IECSSKTQQNVKAVFDTAIKV  176 (211)
Q Consensus       156 ~~~sa~~~~~v~~lf~~l~~~  176 (211)
                      +++||++|.|+++|+++|.+.
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.5e-21  Score=141.90  Aligned_cols=118  Identities=15%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc-ccccccccCCcEEEEEEE
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS-RLRPLSYRGADIFVLAFS   86 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~~i~v~d   86 (211)
                      +|+++|++|+|||||+++|+++.+...+ ++...........++..+.+.+||++|++.++ ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998876654 33333332222224455778899999998875 466778899999999999


Q ss_pred             CCChhhH-HHHHHHHHHHHhhh---CCCCcEEEEeeCCCcccCc
Q 028239           87 LISRASY-ENVLKKWMPELRRF---APNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        87 ~~~~~s~-~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~  126 (211)
                      +++..++ .+....+.+.+...   ..++|++||+||+|+....
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            9997764 44424444444332   2478999999999997643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.3e-21  Score=145.36  Aligned_cols=167  Identities=15%  Similarity=0.191  Sum_probs=104.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----eeee------------eEEEEECCeEEEEEEEeCCCCcCcccc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----FDNF------------SANVAVDGSIVNLGLWDTAGQEDYSRL   70 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~~------------~~~~~~~~~~~~l~l~D~~G~~~~~~~   70 (211)
                      .|+|+|.+++|||||+++|++........+..     ....            .....++.....+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            49999999999999999998643111100000     0000            000111222345679999999999988


Q ss_pred             ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc-----CCcc--ccH---
Q 028239           71 RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV-----GSNV--ITT---  140 (211)
Q Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-----~~~~--~~~---  140 (211)
                      ....+..+|++|+|+|+.++-.-+.  ...+..+...  +.|+|+|+||+|+...........     ....  +..   
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT--QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch--hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            8888999999999999988655555  3444455544  799999999999876543111000     0000  000   


Q ss_pred             HHH----HHHHHH-------------hCCceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          141 AQG----EELRKQ-------------IGAAAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       141 ~~~----~~~~~~-------------~~~~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                      ...    ..+...             .+..+++.+||.+|.|+++|++.|...+.
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            001    111111             11247899999999999999999887653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.2e-21  Score=145.07  Aligned_cols=169  Identities=14%  Similarity=0.149  Sum_probs=116.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccccccccCCcEEEEE
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   84 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   84 (211)
                      +.+||+++|..|||||||++++..+.+    .||.+.. ...+.+++  +.+++||++|++.++..|..+++.++++++|
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            468999999999999999999976654    3455422 23455666  6778999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHHhhhC-CCCcEEEEeeCCCcccCccccc--------cccC-----------
Q 028239           85 FSLISRA----------SYENVLKKWMPELRRFA-PNVPIVLVGTKLDLREDRGYLA--------DHVG-----------  134 (211)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~--------~~~~-----------  134 (211)
                      +|.++.+          .+.+....|...+.... .++|++|++||+|+...+....        ++..           
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            9987643          34444356666666544 6899999999999865432110        0000           


Q ss_pred             -CccccHHHHHHH-----HHHh-------CCceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          135 -SNVITTAQGEEL-----RKQI-------GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       135 -~~~~~~~~~~~~-----~~~~-------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                       -......++..+     .+..       ..+..++|||.++.+|..+|+.+.+.|++.
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence             001112223222     2211       113457899999999999998887776543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5.4e-21  Score=137.37  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccc---------------cc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSR---------------LR   71 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---------------~~   71 (211)
                      .|+++|.+|+|||||+|+|++.... ..+++++...  ..+...+    +.+||+||......               ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            6999999999999999999987643 2333333222  2233333    45899999532211               12


Q ss_pred             cccccCCcEEEEEEECCChhhHHHH---------HHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHH
Q 028239           72 PLSYRGADIFVLAFSLISRASYENV---------LKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQ  142 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~---------~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (211)
                      ...++.+|++++|+|..........         ...+.+.+...  +.|+++|+||+|+.....             ..
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-------------~~  140 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-------------EV  140 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-------------HH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-------------HH
Confidence            2345679999999998765332221         01233344443  799999999999865422             12


Q ss_pred             HHHHHHHhCC------ceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          143 GEELRKQIGA------AAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       143 ~~~~~~~~~~------~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                      ...+.+....      ..++++||++|.|+++|++.|.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2222222221      247899999999999999999988753

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=1.8e-21  Score=141.44  Aligned_cols=166  Identities=14%  Similarity=0.051  Sum_probs=107.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCce---eeeeeEEE------------------EECCeEEEE
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTV---FDNFSANV------------------AVDGSIVNL   56 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~----~~~t~---~~~~~~~~------------------~~~~~~~~l   56 (211)
                      |++.+++|+++|++++|||||+++|++......    ..+..   ........                  ........+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            567889999999999999999999986431110    00000   00000000                  001134668


Q ss_pred             EEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCc
Q 028239           57 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSN  136 (211)
Q Consensus        57 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  136 (211)
                      .++|+||+..|.......+..+|++++|+|+.+....+.. ...+..+... ...++|++.||+|+.+....        
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~--------  150 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDKEKA--------  150 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhhHHH--------
Confidence            8999999999988887788899999999999886422222 2222333333 13457889999998765320        


Q ss_pred             cccHHHHHHHHHHhCC--ceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          137 VITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      .....+..++......  .+++++||++|+|+++|++.+.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         151 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            0112233334433322  4899999999999999999988765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.5e-20  Score=136.38  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=94.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCCcCccc-------------cc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGSIVNLGLWDTAGQEDYSR-------------LR   71 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~D~~G~~~~~~-------------~~   71 (211)
                      ..+|+|+|.+|||||||+|+|++.............. .........   .+.+.|++|-.....             .+
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            3489999999999999999999865321111111111 111122222   233677776322221             11


Q ss_pred             cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHh-
Q 028239           72 PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQI-  150 (211)
Q Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (211)
                      ...+..+|++++|+|++.+..-.+  ..+++.+...  +.|+++|+||+|+.....           ..+....+.+.+ 
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~-----------~~~~~~~~~~~l~  164 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK-----------WDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG-----------HHHHHHHHHHHHT
T ss_pred             hccccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH-----------HHHHHHHHHHHhc
Confidence            223466899999999987654443  4555666655  789999999999865432           122223333332 


Q ss_pred             --CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          151 --GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       151 --~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                        ...+++.+||++|.|+++++++|.+.+
T Consensus       165 ~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         165 IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence              334899999999999999999998876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=9.5e-21  Score=138.58  Aligned_cols=165  Identities=14%  Similarity=0.085  Sum_probs=104.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCC---CCC--c-eeeeeeEEEEE------------------------CCeE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIP--T-VFDNFSANVAV------------------------DGSI   53 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~---~~~--t-~~~~~~~~~~~------------------------~~~~   53 (211)
                      ..+++|+++|+.++|||||+++|++..-...   ...  + ...........                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            3458999999999999999999986321100   000  0 00000000000                        0123


Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADH  132 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  132 (211)
                      ..+.++|+||+..|-......+..+|++|+|+|+.+.- .-+.. +.| ..+... .-.|+||+.||+|+.+....    
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~-e~~-~~~~~~-~i~~iIV~vNK~Dl~~~~~~----  158 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHF-VALGII-GVKNLIIVQNKVDVVSKEEA----  158 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHH-HHH-HHHHHT-TCCCEEEEEECGGGSCHHHH----
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHH-HHH-HHHHHc-CCceeeeccccCCCccchHH----
Confidence            46789999999999887777788999999999998763 32322 222 233332 23588999999999765420    


Q ss_pred             cCCccccHHHHHHHHHHhC--CceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          133 VGSNVITTAQGEELRKQIG--AAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                          .....+..++.....  ..+++.+||++|.|+++|++.+.+++..
T Consensus       159 ----~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         159 ----LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             ----HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ----HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence                011122223333222  2589999999999999999999887643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1.1e-20  Score=135.99  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=96.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCCcCcc----ccccc---cccCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV-DGSIVNLGLWDTAGQEDYS----RLRPL---SYRGA   78 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~----~~~~~---~~~~~   78 (211)
                      +|+|+|.+|||||||+|+|++... ...+.+++.........+ ++.  .+++||+||..+..    .....   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            699999999999999999988663 222333333222223333 343  35699999953211    11111   23568


Q ss_pred             cEEEEEEECCChhhHH--HHHHHHHHHHhh---hCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-C
Q 028239           79 DIFVLAFSLISRASYE--NVLKKWMPELRR---FAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-A  152 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~--~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (211)
                      +.++++++........  .....+......   ...+.|+++|+||+|+.+..              +....+.+... .
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~  146 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  146 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhccC
Confidence            8888888765443211  110111111111   12478999999999987542              22233334332 2


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      .+++.+||++|.|+++|++.+.+.+.+.
T Consensus       147 ~~v~~iSA~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         147 YPVFPISAVTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence            4889999999999999999999988553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=3.1e-20  Score=134.46  Aligned_cols=163  Identities=18%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC-----C--CCC----CCCCce---ee-eeeEEEEECCeEEEEEEEeCCCCcCccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN-----K--FPT----DYIPTV---FD-NFSANVAVDGSIVNLGLWDTAGQEDYSR   69 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~-----~--~~~----~~~~t~---~~-~~~~~~~~~~~~~~l~l~D~~G~~~~~~   69 (211)
                      .+++|+++|++++|||||+++|+..     .  ...    ...+..   +. .......+......+.++|+||+..|-.
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4689999999999999999999741     0  000    000111   00 0111222222335567999999999988


Q ss_pred             cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           70 LRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                      .....+..+|++++|+|+.+...-+.. +.| ..+... ...|+||+.||+|+..+...       ...-..+...+...
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~-~~~-~~a~~~-~~~~iIv~iNK~D~~~~~~~-------~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI-GVEHVVVYVNKADAVQDSEM-------VELVELEIRELLTE  151 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT-TCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH-HHH-HHHHHh-cCCcEEEEEecccccccHHH-------HHHHHHHHHHHHHH
Confidence            877788999999999999987655543 333 333332 24678999999998754320       00122345555555


Q ss_pred             hCC----ceEEEecCCCC----------CCHHHHHHHHHHHH
Q 028239          150 IGA----AAYIECSSKTQ----------QNVKAVFDTAIKVV  177 (211)
Q Consensus       150 ~~~----~~~~~~sa~~~----------~~v~~lf~~l~~~~  177 (211)
                      ++.    .|++.+||++|          +++.+|++.+.+.+
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            554    57999999988          58888888887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.6e-19  Score=125.40  Aligned_cols=159  Identities=16%  Similarity=0.106  Sum_probs=107.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCc---------cccccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDY---------SRLRPL   73 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------~~~~~~   73 (211)
                      ..-.|+++|.+|+|||||+|+|++....  .....+...........+...  +..||++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhcccc
Confidence            3446999999999999999999987632  222333334444444555543  447888884321         122233


Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAA  153 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (211)
                      ....+++++++.|..+......   .+...+.+.  ..|.++|+||.|......          ........+...++..
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~~---~~~~~l~~~--~~~~i~v~~k~d~~~~~~----------~~~~~~~~~~~~~~~~  146 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDDE---MVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFL  146 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHHH---HHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCS
T ss_pred             chhhcceeEEEEecCccchhHH---HHHHHhhhc--cCceeeeeeeeeccchhh----------hhhhHhhhhhhhcCCC
Confidence            4566788888888765433322   233333333  678999999999876643          3345556677777877


Q ss_pred             eEEEecCCCCCCHHHHHHHHHHHHcCC
Q 028239          154 AYIECSSKTQQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       154 ~~~~~sa~~~~~v~~lf~~l~~~~~~~  180 (211)
                      +++++||++|.|+++|++.|.+.+.+.
T Consensus       147 ~~~~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         147 DIVPISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             EEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             CEEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999999998887543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=6.5e-19  Score=128.37  Aligned_cols=144  Identities=18%  Similarity=0.152  Sum_probs=93.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC------C--CCC----CCC------CceeeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN------K--FPT----DYI------PTVFDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~------~--~~~----~~~------~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      .+++|+++|++++|||||+++|+..      .  ...    .+.      +.+.+.....+..++.  .+.|+||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~--~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCe--EEEEEeCCCchh
Confidence            4699999999999999999999731      0  100    000      1111112234445564  456999999999


Q ss_pred             ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccccccccCCccccHHHHHH
Q 028239           67 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGYLADHVGSNVITTAQGEE  145 (211)
Q Consensus        67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (211)
                      |-......+..+|++|+|+|+.++...+.. +.| ..+...  ++| ++|++||+|+.+....       ......+...
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~-~~~~~~--gi~~iiv~iNK~D~~~~~~~-------~~~~~~~i~~  148 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTR-EHI-LLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEVRD  148 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHH-HHHHHc--CCCeEEEEEEecccCCCHHH-------HHHHHHHHHH
Confidence            998888889999999999999998877764 444 344444  665 7788999998654310       0011233444


Q ss_pred             HHHHhCC----ceEEEecCC
Q 028239          146 LRKQIGA----AAYIECSSK  161 (211)
Q Consensus       146 ~~~~~~~----~~~~~~sa~  161 (211)
                      +...++.    .+++..|+.
T Consensus       149 ~l~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         149 LLNQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHHHTTSCTTTSCEEECCHH
T ss_pred             HHHhcCCCcccceeeeeech
Confidence            4444432    467888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.73  E-value=1.2e-17  Score=122.83  Aligned_cols=152  Identities=16%  Similarity=0.132  Sum_probs=97.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC--CCCCC----------CCCce----------------------eeeeeEEEEE
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPTD----------YIPTV----------------------FDNFSANVAV   49 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~--~~~~~----------~~~t~----------------------~~~~~~~~~~   49 (211)
                      ...+||+++|++++|||||+++|+..  .+...          ..++.                      .......+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            45789999999999999999999731  11110          00000                      0000112222


Q ss_pred             CCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcccCccc
Q 028239           50 DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLREDRGY  128 (211)
Q Consensus        50 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~  128 (211)
                      .+  ..+.++|+||+..|-......+..+|++++|+|+.+...-+.. +.+ ..+...  +++ +|++.||+|+.+....
T Consensus        87 ~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~-~~~~~~--gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          87 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHS-YIASLL--GIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             cc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHH-HHHHHc--CCCEEEEEEEccccccccce
Confidence            34  4567999999999988777788999999999999887655553 333 333333  554 7889999999764320


Q ss_pred             cccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHH
Q 028239          129 LADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVK  167 (211)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~  167 (211)
                            .......+...+.+..+.    .+|+++||.+|.||.
T Consensus       161 ------~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 ------VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             ------HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ------ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                  000111233455555543    478999999999984

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.1e-17  Score=122.07  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccccccc----ccCCc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLS----YRGAD   79 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~----~~~~d   79 (211)
                      +++.+|+++|++|||||||+|+|++..+.+..   +.......+..++  ..+.+||+||++.+...+...    ...++
T Consensus         1 ~~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t---t~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC---CCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCeE---EecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            35679999999999999999999998765332   1222222233334  456799999998877655443    44568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHH----HHHhhhC-CCCcEEEEeeCCCcccCc
Q 028239           80 IFVLAFSLIS-RASYENVLKKWM----PELRRFA-PNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        80 ~~i~v~d~~~-~~s~~~~~~~~~----~~~~~~~-~~~p~ivv~nK~Dl~~~~  126 (211)
                      .+++++|+.+ ..++.+. ..|+    ..+.... .++|+++|+||+|+....
T Consensus        76 ~~i~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8888888764 4555555 3333    3333333 589999999999987643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.7e-17  Score=118.84  Aligned_cols=163  Identities=14%  Similarity=0.026  Sum_probs=87.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc---------
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL---------   70 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~---------   70 (211)
                      +.+..++|+++|.+|+|||||+|+|++.+.....  .++............+. ..+..++.++.......         
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK-RLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE-EEEECCCCC------CCHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceeccccc-ceeeeecccccchhhhhhhhhhhhhh
Confidence            4567899999999999999999999987643222  22222222222223332 22222222222211111         


Q ss_pred             -ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHH
Q 028239           71 -RPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQ  149 (211)
Q Consensus        71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (211)
                       ........+.++.+.+.........  ..+...+...  ..++++++||.|+......        ....+...+....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~--------~~~~~~~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDS--NIAVLVLLTKADKLASGAR--------KAQLNMVREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHH--HHHHHHhhhc--cccccchhhhhhccCHHHH--------HHHHHHHHHHHHh
Confidence             0111234455666666655544444  3444555444  7889999999998764320        0111222222222


Q ss_pred             h-CCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          150 I-GAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       150 ~-~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      . +..+++.+||++|.|+++|++.|.+.+
T Consensus       159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            2 234789999999999999999987654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=8.7e-17  Score=120.05  Aligned_cols=159  Identities=18%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------------------------CCCCceeeeeeEEEEEC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSNK--FPT------------------------------DYIPTVFDNFSANVAVD   50 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~   50 (211)
                      ...+++|+++|+.++|||||+.+|+...  +..                              ...+.........+..+
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            3457899999999999999999995311  100                              00000000001122233


Q ss_pred             CeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhH-------HHHHHHHHHHHhhhCCCC-cEEEEeeCCCc
Q 028239           51 GSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASY-------ENVLKKWMPELRRFAPNV-PIVLVGTKLDL  122 (211)
Q Consensus        51 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl  122 (211)
                      +  ..+.+.|+||+..|-.........+|++++|+|+.+...-       +.. +.+ ..+...  ++ +++++.||+|+
T Consensus       101 ~--~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~-e~l-~l~~~~--~i~~iiv~iNKmD~  174 (245)
T d1r5ba3         101 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHA-VLARTQ--GINHLVVVINKMDE  174 (245)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHH-HHHHHT--TCSSEEEEEECTTS
T ss_pred             c--ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchH-HHH-HHHHHc--CCCeEEEEEEcCCC
Confidence            3  4567999999999999888889999999999999875311       111 122 222222  44 47899999998


Q ss_pred             ccCccccccccCCccccHHHHHHHHHHh-C-----CceEEEecCCCCCCHHHHHH
Q 028239          123 REDRGYLADHVGSNVITTAQGEELRKQI-G-----AAAYIECSSKTQQNVKAVFD  171 (211)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~sa~~~~~v~~lf~  171 (211)
                      ......   +.... ...++...+.++. +     .++|+++||++|+||.++++
T Consensus       175 ~~~~~~---e~~~~-ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         175 PSVQWS---EERYK-ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TTCSSC---HHHHH-HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             Cccchh---HHHHH-HHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            643210   00000 0012222233333 1     14799999999999977543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=9.6e-16  Score=115.52  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCC-----------CCCCc------eeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN--KFPT-----------DYIPT------VFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~--~~~~-----------~~~~t------~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      +|+++|+.++|||||+.+++..  ....           ++.+.      ........+.+++  ..++|+||||+..|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhhH
Confidence            6999999999999999999742  1110           00000      0111123445566  556799999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ......++.+|++|+|+|+.+.-..+.. ..| ......  ++|.++++||.|...
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w-~~a~~~--~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSE-TVW-RQAEKY--KVPRIAFANKMDKTG  137 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSTT
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHH-HHH-HHHHHc--CCCEEEEEecccccc
Confidence            9988899999999999999998777775 445 444544  899999999999643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.65  E-value=1.2e-15  Score=114.66  Aligned_cols=110  Identities=22%  Similarity=0.218  Sum_probs=79.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCC------CCC-----------CceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK--FPT------DYI-----------PTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~--~~~------~~~-----------~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      +|+++|+.++|||||+.+++...  ...      ...           ......-...+..++  ..++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            59999999999999999996421  100      000           000111123345566  456799999999999


Q ss_pred             ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           69 RLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ......++.+|++++|+|+.++-..+.. ..| ....+.  ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~-~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTE-RAW-TVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhH-HHH-Hhhhhc--cccccccccccccc
Confidence            9888889999999999999988777775 445 444444  79999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3e-16  Score=116.54  Aligned_cols=153  Identities=12%  Similarity=0.045  Sum_probs=98.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------------CCCCceeeeeeEEEEECC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS--NKFPT------------------------------DYIPTVFDNFSANVAVDG   51 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~   51 (211)
                      ..+++|+++|+.++|||||+.+|+.  +.+..                              ...+.+.+.-...+..++
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            3468999999999999999999962  11110                              001111111123444455


Q ss_pred             eEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhhCCCCc-EEEEeeCCCcc
Q 028239           52 SIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRAS-------YENVLKKWMPELRRFAPNVP-IVLVGTKLDLR  123 (211)
Q Consensus        52 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  123 (211)
                        +.+.|+|+|||..|-......+..+|++|+|+|+.....       .+.. +.| ......  ++| +||++||+|+.
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~-eh~-~~~~~~--gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHA-LLAFTL--GVRQLIVAVNKMDSV  157 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHH-HHHHHT--TCCEEEEEEECGGGG
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHH-HHH-HHHHHc--CCCeEEEEEECCCCC
Confidence              567799999999999888888999999999999987531       1222 333 222232  555 78899999987


Q ss_pred             cCccccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHH
Q 028239          124 EDRGYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKA  168 (211)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~  168 (211)
                      +.....      ......+...+....+.    .+|+.+|+.+|.|+.+
T Consensus       158 ~~d~~~------~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         158 KWDESR------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TTCHHH------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCHHH------HHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            643200      00112334445555543    5789999999988643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.62  E-value=2.7e-16  Score=116.01  Aligned_cols=156  Identities=11%  Similarity=0.072  Sum_probs=93.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------------------------CCCCceeeeeeEEEEECCe
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK--FPT------------------------------DYIPTVFDNFSANVAVDGS   52 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~~~   52 (211)
                      .+++|+++|+.++|||||+.+|+...  ...                              ...+.........+..++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            37899999999999999999886311  100                              001111111111223334 


Q ss_pred             EEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHH------HHHHHHHHHHhhhCCCCcEEEEeeCCCcccCc
Q 028239           53 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYE------NVLKKWMPELRRFAPNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        53 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  126 (211)
                       +.+.++|||||..|-......++.+|++++|+|+.+...-+      ...+.+ .... .....++|++.||+|+....
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~-~~~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAK-TMGLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHH-HTTCTTCEEEEECGGGSSST
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-HHHH-HhCCCceEEEEEcccCCCcc
Confidence             56779999999999998888899999999999998863211      110111 1111 12245689999999987532


Q ss_pred             cccccccCCccccHHHHHHHHHHhCC----ceEEEecCCCCCCHHH
Q 028239          127 GYLADHVGSNVITTAQGEELRKQIGA----AAYIECSSKTQQNVKA  168 (211)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~v~~  168 (211)
                      ...   . .......+...+...++.    .+|+.+||..|.|+.+
T Consensus       158 ~~~---~-~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDE---K-RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCH---H-HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccH---H-HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            100   0 000111234445455432    4789999999998853

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.5e-15  Score=116.56  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=83.4

Q ss_pred             CCCCceeE-EEEECCCCCCHHHHHHHHhc--CCCCC------CCCCceeeeee---------EEEEE-------------
Q 028239            1 MSASKFIK-CVTVGDGAVGKTCMLICYTS--NKFPT------DYIPTVFDNFS---------ANVAV-------------   49 (211)
Q Consensus         1 m~~~~~~~-I~viG~~~~GKSsli~~l~~--~~~~~------~~~~t~~~~~~---------~~~~~-------------   49 (211)
                      |++...+| |+|+|+.++|||||+.+|+.  +....      .+..+..++..         ..+..             
T Consensus        11 m~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~   90 (341)
T d1n0ua2          11 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK   90 (341)
T ss_dssp             HHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred             hcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcc
Confidence            44556675 99999999999999999973  11111      11111111111         11111             


Q ss_pred             -CCeEEEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           50 -DGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        50 -~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                       ++..+.++++||||+..|.......++-+|++++|+|+.++-..+.. ..|..... .  +.|+++++||+|..
T Consensus        91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~-~--~~p~i~viNKiDr~  161 (341)
T d1n0ua2          91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG-E--RIKPVVVINKVDRA  161 (341)
T ss_dssp             CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH-T--TCEEEEEEECHHHH
T ss_pred             ccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHH-c--CCCeEEEEECcccc
Confidence             34568899999999999999988899999999999999998888775 55544433 3  79999999999964

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.2e-14  Score=113.23  Aligned_cols=164  Identities=11%  Similarity=0.124  Sum_probs=93.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CC-----CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcccc-----ccc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNKFPT-DY-----IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRL-----RPL   73 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~~~~-~~-----~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----~~~   73 (211)
                      .+++|+|+|.+|+|||||+|+|++..... ..     .+|+.+..  .+...+. -.+.+|||||-......     ...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~--~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSC-TTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee--eeeccCC-CeEEEEeCCCcccccccHHHHHHHh
Confidence            46899999999999999999999855322 11     11222211  1222211 22559999996443321     222


Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccH----HHH----HH
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITT----AQG----EE  145 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~----~~  145 (211)
                      .+..+|.++++.|..-  +-.+  ..+...+...  +.|+++|.||+|..........   ......    ++.    ..
T Consensus       132 ~~~~~d~~l~~~~~~~--~~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~---~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         132 KFYEYDFFIIISATRF--KKND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADGE---PQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             TGGGCSEEEEEESSCC--CHHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTC---CTTCCHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCC--CHHH--HHHHHHHHHc--CCCEEEEEeCcccccchhhhcc---cccccHHHHHHHHHHHHHH
Confidence            4567898888877432  2233  3455566665  8999999999996422110000   000111    111    22


Q ss_pred             HHHHhC--CceEEEecCCC--CCCHHHHHHHHHHHHcCC
Q 028239          146 LRKQIG--AAAYIECSSKT--QQNVKAVFDTAIKVVLQP  180 (211)
Q Consensus       146 ~~~~~~--~~~~~~~sa~~--~~~v~~lf~~l~~~~~~~  180 (211)
                      ..+..+  ..++|.+|+.+  ..++.+|.+.+.+.+-..
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            222222  23678888765  458999999988887553

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.48  E-value=3.9e-13  Score=100.81  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=76.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcCccccc-------c--
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLR-------P--   72 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-------~--   72 (211)
                      ...++|+++|.+|+|||||+|++++....  ....+++..........++.  .+.|+||||........       .  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHH
Confidence            35799999999999999999999997632  33345555555556667774  46699999953322110       0  


Q ss_pred             ccccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhC---CCCcEEEEeeCCCcccCc
Q 028239           73 LSYRGADIFVLAFSLISRA-SYENVLKKWMPELRRFA---PNVPIVLVGTKLDLREDR  126 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~  126 (211)
                      ......|++++|++++... +-.+  ...+..+....   .-.++|||.||+|.....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~--~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH--HHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            1234578899999886532 2222  22222232221   135789999999987644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.38  E-value=1.8e-13  Score=101.53  Aligned_cols=122  Identities=13%  Similarity=0.011  Sum_probs=67.7

Q ss_pred             EEEEEEeCCCCcCccccccc---c--ccCCcEEEEEEECC---ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccC
Q 028239           54 VNLGLWDTAGQEDYSRLRPL---S--YRGADIFVLAFSLI---SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~---~--~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ..+.+.|+||+..+......   .  ....+.++++.|+.   ++..+......-.....+.  ..|.++|+||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccH
Confidence            34669999998665332221   1  23466889999974   3333333211111111122  7899999999998764


Q ss_pred             ccccccc-----------------cCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHHHH
Q 028239          126 RGYLADH-----------------VGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV  177 (211)
Q Consensus       126 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~lf~~l~~~~  177 (211)
                      .......                 ...+...........+..+..+++.+||++|+|+++++..|.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3210000                 000000111111112223456899999999999999999988763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.28  E-value=4.3e-12  Score=97.75  Aligned_cols=105  Identities=11%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcccccccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHV  133 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  133 (211)
                      +.+.|++|.|.-.-.   ......+|.+++|......+..+......++        .+=++|+||+|+.....      
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheeeEeccccccchH------
Confidence            456688888753322   1234569999999999888776655222211        22389999999876543      


Q ss_pred             CCccccHHHHHHHHHHh---------CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          134 GSNVITTAQGEELRKQI---------GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                          ........+...+         ...+++.+||.+|.|++++.+.|.+....
T Consensus       207 ----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         207 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence                2222222333322         22479999999999999999999877644

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.8e-12  Score=97.58  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             EEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccC
Q 028239           55 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVG  134 (211)
Q Consensus        55 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  134 (211)
                      .+.+++|.|.-.-.   ..+...+|.+++|.+....+..+.. +..+-.+       +=++|+||+|+.....-      
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~-k~gi~e~-------aDi~VvNKaD~~~~~~~------  210 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGI-KKGLMEV-------ADLIVINKDDGDNHTNV------  210 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCC-CHHHHHH-------CSEEEECCCCTTCHHHH------
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhh-chhhhcc-------ccEEEEEeecccchHHH------
Confidence            34466666642211   1245678999999887766665544 2222221       23788999998753210      


Q ss_pred             CccccHHHHHHHHHHh------CCceEEEecCCCCCCHHHHHHHHHHHHcC
Q 028239          135 SNVITTAQGEELRKQI------GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  179 (211)
Q Consensus       135 ~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~v~~lf~~l~~~~~~  179 (211)
                        .....+.......+      ...+++.+||.+|+|++++++.|.+....
T Consensus       211 --~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         211 --AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             --HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence              01112222222211      12479999999999999999999876643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=6.8e-10  Score=85.36  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=45.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEE----------------------EECCeEEEEEEEeCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANV----------------------AVDGSIVNLGLWDTAG   63 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~----------------------~~~~~~~~l~l~D~~G   63 (211)
                      ++|.++|.|+||||||+|+|.+.. -...|+.|+.+......                      ........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999865 44556655532211111                      0112346788999999


Q ss_pred             CcCc----c---ccccccccCCcEEEEEEECC
Q 028239           64 QEDY----S---RLRPLSYRGADIFVLAFSLI   88 (211)
Q Consensus        64 ~~~~----~---~~~~~~~~~~d~~i~v~d~~   88 (211)
                      --..    .   ...-..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4221    1   11223467899999999975

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.01  E-value=3.8e-09  Score=79.57  Aligned_cols=82  Identities=20%  Similarity=0.188  Sum_probs=55.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcCcc-
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQEDYS-   68 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~-   68 (211)
                      .+||.++|.|+||||||++++.+... ...|+.|+.+.....+.+.+.               ...+.+.|+||.-.-. 
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            47999999999999999999998763 355666665444445555432               1247799999953321 


Q ss_pred             ---ccccc---cccCCcEEEEEEEC
Q 028239           69 ---RLRPL---SYRGADIFVLAFSL   87 (211)
Q Consensus        69 ---~~~~~---~~~~~d~~i~v~d~   87 (211)
                         .+...   .++.+|+++.|+|.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence               23333   36889999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=8e-09  Score=78.45  Aligned_cols=117  Identities=19%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEE-----------CC----------------------
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV-----------DG----------------------   51 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-----------~~----------------------   51 (211)
                      ..+|+|+|..++|||||+|+|++..+ +....+++.......+.-           .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45899999999999999999999885 444444431111100000           00                      


Q ss_pred             -----------------eEEEEEEEeCCCCcCcc-------------ccccccccCCc-EEEEEEECCChhhHHHHHHHH
Q 028239           52 -----------------SIVNLGLWDTAGQEDYS-------------RLRPLSYRGAD-IFVLAFSLISRASYENVLKKW  100 (211)
Q Consensus        52 -----------------~~~~l~l~D~~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  100 (211)
                                       ....+.++|+||-....             .+...++...+ ++++|.+++...+.... ..+
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHH
Confidence                             01236799999954321             11223444555 56677777665555554 455


Q ss_pred             HHHHhhhCCCCcEEEEeeCCCcccC
Q 028239          101 MPELRRFAPNVPIVLVGTKLDLRED  125 (211)
Q Consensus       101 ~~~~~~~~~~~p~ivv~nK~Dl~~~  125 (211)
                      ...+...  ..++++|.||+|..++
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSCT
T ss_pred             HHHhCcC--CCceeeEEeccccccc
Confidence            5555443  5789999999998764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=1.5e-09  Score=82.49  Aligned_cols=86  Identities=24%  Similarity=0.232  Sum_probs=62.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCCcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGS---------------IVNLGLWDTAGQED   66 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~   66 (211)
                      +..++|.++|.|+||||||++++++..  -...|+.|+.+.....+.+.+.               ...+++.|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            456899999999999999999999764  3577888876555555665542               24677999998533


Q ss_pred             ccc----c---ccccccCCcEEEEEEECCC
Q 028239           67 YSR----L---RPLSYRGADIFVLAFSLIS   89 (211)
Q Consensus        67 ~~~----~---~~~~~~~~d~~i~v~d~~~   89 (211)
                      -.+    +   .-..++.+|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            221    1   1223689999999999754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.82  E-value=4e-09  Score=80.47  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      .+|+|+|..++|||||+|.|++..+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            5899999999999999999999875

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=4.4e-08  Score=73.42  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ   64 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~   64 (211)
                      ...++|+|+|-|+||||||+|+|.+...  ....++++...  ..+..+..   +.++||||-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~~---~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGKE---LELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETTT---EEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCCC---eEEecCCCc
Confidence            4578999999999999999999999763  23333333221  22333322   569999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=7.7e-07  Score=64.07  Aligned_cols=84  Identities=15%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             ccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhC-C
Q 028239           75 YRGADIFVLAFSLISRAS-YENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIG-A  152 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (211)
                      ..+.|.+++|+++.+|+. ...+ .+|+-.....  ++|.+||+||+||.++.            ..+...++...+. .
T Consensus         8 vANiD~vliV~s~~~P~~~~~~l-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~------------~~~~~~~~~~~~~~~   72 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYII-DKFLVLAEKN--ELETVMVINKMDLYDED------------DLRKVRELEEIYSGL   72 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHH------------HHHHHHHHHHHHTTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEeCcccCCHH------------HHHHHHHhhcccccc
Confidence            568899999999988753 4444 6776665555  89999999999997642            2223333444332 2


Q ss_pred             ceEEEecCCCCCCHHHHHHHH
Q 028239          153 AAYIECSSKTQQNVKAVFDTA  173 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l  173 (211)
                      .+.+.+|++++.|++++.+.+
T Consensus        73 ~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          73 YPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             SCEEECCTTTCTTHHHHHHHH
T ss_pred             eeEEEeccccchhHhhHHHHh
Confidence            478999999999999988754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=3.5e-07  Score=65.93  Aligned_cols=58  Identities=16%  Similarity=0.040  Sum_probs=34.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-C----CCce--eeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTD-Y----IPTV--FDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~-~----~~t~--~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      ..+++|++|||||||+|+|........ .    ....  .+....-+.+++..   .++||||-..+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            578999999999999999987542111 0    0111  12223334454332   389999976544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.6e-06  Score=64.59  Aligned_cols=87  Identities=15%  Similarity=0.082  Sum_probs=61.6

Q ss_pred             ccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC
Q 028239           73 LSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                      ..+..+|++++|.|+.++.+..+  ..+.+.    ..+.|.|+|+||+|+.+..           ...... ++.+..+.
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~----~~~Kp~IlVlNK~DLv~~~-----------~~~~w~-~~f~~~~~   72 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRN--PMIEDI----LKNKPRIMLLNKADKADAA-----------VTQQWK-EHFENQGI   72 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSC--HHHHHH----CSSSCEEEEEECGGGSCHH-----------HHHHHH-HHHHTTTC
T ss_pred             HHHHhCCEEEEEEECCCCCCCCC--HHHHHH----HcCCCeEEEEECccCCchH-----------HHHHHH-HHHHhcCC
Confidence            35788999999999999877654  222222    2378999999999997643           222222 22333344


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHc
Q 028239          153 AAYIECSSKTQQNVKAVFDTAIKVVL  178 (211)
Q Consensus       153 ~~~~~~sa~~~~~v~~lf~~l~~~~~  178 (211)
                       ..+.+|+.++.+...+...+.+.+.
T Consensus        73 -~~i~isa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          73 -RSLSINSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             -CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             -ccceeecccCCCccccchhhhhhhh
Confidence             7899999999999988887777664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=1e-06  Score=63.60  Aligned_cols=83  Identities=23%  Similarity=0.277  Sum_probs=59.0

Q ss_pred             ccCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHH---HHHh
Q 028239           75 YRGADIFVLAFSLISRA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEEL---RKQI  150 (211)
Q Consensus        75 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  150 (211)
                      ..+.|.+++|+++.+++ +...+ .+++-.....  +++.+||+||+||.++..           .......+   ....
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~i-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~~~   73 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEAN--DIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYRNI   73 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHH-HHHHHHHHTT--TCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEecccccccHH-----------HHHHHHHHHHHHhhc
Confidence            46899999999998875 44444 6666555544  899999999999976531           22223333   3445


Q ss_pred             CCceEEEecCCCCCCHHHHHHH
Q 028239          151 GAAAYIECSSKTQQNVKAVFDT  172 (211)
Q Consensus       151 ~~~~~~~~sa~~~~~v~~lf~~  172 (211)
                      +. +++.+|++++.|++++...
T Consensus        74 g~-~v~~~Sa~~~~gl~~L~~~   94 (231)
T d1t9ha2          74 GY-DVYLTSSKDQDSLADIIPH   94 (231)
T ss_dssp             TC-CEEECCHHHHTTCTTTGGG
T ss_pred             cc-cceeeecCChhHHHHHHHh
Confidence            66 8999999999988877643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.3e-05  Score=56.36  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=42.2

Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCC-ceEE
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGA-AAYI  156 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  156 (211)
                      .++++.|+|+............+..++...    . ++|+||+|+..+            .  +..++..+.++. .+++
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A----D-~ivlNK~Dl~~~------------~--~~~~~~l~~lNP~a~Ii  182 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGYA----D-RILLTKTDVAGE------------A--EKLHERLARINARAPVY  182 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHTC----S-EEEEECTTTCSC------------T--HHHHHHHHHHCSSSCEE
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHhC----C-cccccccccccH------------H--HHHHHHHHHHhCCCeEE
Confidence            578899999987754433323344444432    2 678999998753            1  234455556654 4666


Q ss_pred             EecCCCCCCHHHHH
Q 028239          157 ECSSKTQQNVKAVF  170 (211)
Q Consensus       157 ~~sa~~~~~v~~lf  170 (211)
                      +++ .-...++.+|
T Consensus       183 ~~~-~g~v~~~~ll  195 (222)
T d1nija1         183 TVT-HGDIDLGLLF  195 (222)
T ss_dssp             ECC-SSCCCGGGGS
T ss_pred             Eee-CCccCHHHhh
Confidence            554 2233555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=1.2e-06  Score=63.28  Aligned_cols=57  Identities=18%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-C----C--CCceeeeeeEEEEECCeEEEEEEEeCCCCcCcc
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPT-D----Y--IPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYS   68 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~-~----~--~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~   68 (211)
                      ..+++|++|+|||||+|+|.+..... .    .  .+...+....-+..++. +   ++||||-..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg-~---iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG-L---VADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE-E---EESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC-E---EEECCcccccc
Confidence            46799999999999999999753111 0    0  11001111222334552 2   78999986654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.85  E-value=5e-06  Score=58.44  Aligned_cols=28  Identities=21%  Similarity=0.120  Sum_probs=25.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      |.++++.-|+|+|+|||||||++++|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            7888999999999999999999998865

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.81  E-value=5.1e-06  Score=57.34  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998863

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.65  E-value=1.4e-05  Score=54.71  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            45678999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=1.2e-05  Score=55.50  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      =+|+|.|++|+|||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999999763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.57  E-value=2.3e-05  Score=54.87  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=24.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.+-++|+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999999988763

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.57  E-value=0.00015  Score=51.33  Aligned_cols=85  Identities=22%  Similarity=0.165  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCCcCccccc----ccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCcc
Q 028239           54 VNLGLWDTAGQEDYSRLR----PLS--YRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRG  127 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  127 (211)
                      +.+.++||+|....+...    ..+  ..+.+-+++|.|++....-.+....+.+.+     ++ -=+++||.|....  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-----~~-~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-----GV-TGLVLTKLDGDAR--  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-----CC-CEEEEECGGGCSS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-----CC-CeeEEeecCcccc--
Confidence            456699999965544211    111  245688999999876644333213333322     22 2477999996543  


Q ss_pred             ccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239          128 YLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                                  .-.+..+....+. |+..++
T Consensus       165 ------------~G~~l~~~~~~~~-Pi~~i~  183 (207)
T d1ls1a2         165 ------------GGAALSARHVTGK-PIYFAG  183 (207)
T ss_dssp             ------------CHHHHHHHHHHCC-CEEEEC
T ss_pred             ------------chHHHHHHHHHCC-CEEEEe
Confidence                        3445666777777 766654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.56  E-value=1.7e-05  Score=54.18  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..+|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.52  E-value=2e-05  Score=55.07  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+++|+|+|+|||||||+++.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999988754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.50  E-value=3e-05  Score=54.14  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +.+||+++|+|||||||++..|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=3e-05  Score=53.57  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +||+|+|+|||||||+++.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=3.2e-05  Score=52.56  Aligned_cols=20  Identities=20%  Similarity=0.106  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|+|.+|||||||++++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            88999999999999999975

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=4.3e-05  Score=52.87  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.37  E-value=4.8e-05  Score=50.80  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |++.|+||||||||++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.36  E-value=5.2e-05  Score=52.51  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ++|+|+|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999888653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.5e-05  Score=52.30  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999998865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=5.5e-05  Score=52.19  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.24  E-value=7.9e-05  Score=50.57  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++||||||+++.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00013  Score=51.01  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=23.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +++..--|+|+|+|||||||+...|..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            456667799999999999999998865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=51.16  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00013  Score=50.03  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=22.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+.+.=|+++|.|||||||+++++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999998864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00021  Score=52.88  Aligned_cols=59  Identities=19%  Similarity=-0.030  Sum_probs=35.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCC----Cce-eeeeeEEEEECCeEEEEEEEeCCCCcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKFPTDYI----PTV-FDNFSANVAVDGSIVNLGLWDTAGQED   66 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~~~~~~----~t~-~~~~~~~~~~~~~~~~l~l~D~~G~~~   66 (211)
                      =|.|+|+.++|||+|+|.|++....-...    +.+ +.-....-..++....+.++||.|...
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            47899999999999999999876322211    111 221111111133334566999999644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00011  Score=49.21  Aligned_cols=22  Identities=18%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.12  E-value=0.00013  Score=49.55  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.2

Q ss_pred             EE-EEECCCCCCHHHHHHHHhc
Q 028239            8 KC-VTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I-~viG~~~~GKSsli~~l~~   28 (211)
                      || .|+|.+|||||||+++|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00013  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.185  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+|+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999987753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=49.36  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999988864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00021  Score=49.63  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.00021  Score=50.17  Aligned_cols=22  Identities=36%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4489999999999999998874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.95  E-value=0.00022  Score=48.88  Aligned_cols=20  Identities=25%  Similarity=0.150  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.95  E-value=0.00021  Score=48.38  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987743

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.0026  Score=45.64  Aligned_cols=23  Identities=13%  Similarity=0.172  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999887653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00024  Score=51.41  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      +|+|+|+.|+|||||++.+.+--
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999887753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.91  E-value=0.00031  Score=47.83  Aligned_cols=20  Identities=20%  Similarity=0.119  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999988853

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.00025  Score=48.89  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00026  Score=47.90  Aligned_cols=21  Identities=19%  Similarity=0.183  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      =++++|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999998865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.88  E-value=0.00038  Score=47.31  Aligned_cols=24  Identities=13%  Similarity=0.041  Sum_probs=20.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +-+-|.++|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999987753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.88  E-value=0.0003  Score=51.35  Aligned_cols=24  Identities=17%  Similarity=0.098  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +--|++.|+||+|||+|+..+...
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999988764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.87  E-value=0.00028  Score=47.90  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999888654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00032  Score=48.35  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.82  E-value=0.00035  Score=50.63  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999988764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.81  E-value=0.00033  Score=49.25  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999997754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.81  E-value=0.0003  Score=48.99  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -|+|+|+|||||||++..|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.81  E-value=0.00033  Score=47.48  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999988764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00034  Score=48.65  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.78  E-value=0.00034  Score=51.02  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|+.|+|||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999988764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00039  Score=48.46  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.+.-+++++|+||+|||+++..|...
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            344568999999999999999777643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00041  Score=48.95  Aligned_cols=21  Identities=10%  Similarity=0.276  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+||+|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.75  E-value=0.00038  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++++|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999977664

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00041  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00041  Score=50.49  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+--
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999887643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.71  E-value=0.0014  Score=47.20  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999887653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.69  E-value=0.00062  Score=46.99  Aligned_cols=25  Identities=16%  Similarity=0.015  Sum_probs=21.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..++=|+|-|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456688999999999999998864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00045  Score=49.64  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.+++.||||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.68  E-value=0.00048  Score=49.60  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++++|+.|+|||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.68  E-value=0.00053  Score=48.56  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+.|+|-|||||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47889999999999999988864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00048  Score=50.98  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++|+|+.|+|||||++.+.+--
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998743

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0005  Score=50.45  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +...=+++++|+||+|||+++..|...
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            444568999999999999999877643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.64  E-value=0.00053  Score=49.40  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999887754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.00053  Score=49.17  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.||||+|||++++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36899999999999999988653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.57  E-value=0.00054  Score=51.78  Aligned_cols=26  Identities=15%  Similarity=0.112  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKFP   32 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~~   32 (211)
                      -+|+|.|+.|+|||||++.|+....+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc
Confidence            36999999999999999999875543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00054  Score=49.39  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -+.++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999987643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.55  E-value=0.00076  Score=46.82  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=23.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...+++=|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3567788999999999999999988653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.53  E-value=0.00064  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.50  E-value=0.00043  Score=50.49  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +++|+|+.|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999986655

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.50  E-value=0.001  Score=48.21  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-.|++.||||+|||+|++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999999865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.50  E-value=0.00043  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.49  E-value=0.00066  Score=46.55  Aligned_cols=21  Identities=29%  Similarity=0.254  Sum_probs=17.3

Q ss_pred             EEE-EECCCCCCHHHHHHHHhc
Q 028239            8 KCV-TVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~-viG~~~~GKSsli~~l~~   28 (211)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999988853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00056  Score=49.15  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.0011  Score=47.84  Aligned_cols=24  Identities=21%  Similarity=0.115  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            367999999999999999987653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00044  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.117  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..-|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.0012  Score=47.56  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57999999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.00088  Score=50.24  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|+++||||+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999988653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.0016  Score=46.05  Aligned_cols=92  Identities=12%  Similarity=0.080  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCCcCcccc----cccc---c-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239           54 VNLGLWDTAGQEDYSRL----RPLS---Y-----RGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKL  120 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  120 (211)
                      +.+.|+||+|...++..    ...+   .     ...+-.++|.|++.. +.+..+ ...+..+      -+-=++.||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA-KIFKEAV------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH-HHHHHHS------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh-hhhcccc------CCceEEEecc
Confidence            45679999995443321    0111   1     125678999998654 334444 2222222      2336779999


Q ss_pred             CcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q 028239          121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAV  169 (211)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  169 (211)
                      |....              .-.+..++...+. |+..++  +|++++++
T Consensus       167 De~~~--------------~G~~l~~~~~~~~-Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         167 DGTAK--------------GGITLAIARELGI-PIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GGCSC--------------TTHHHHHHHHHCC-CEEEEE--CSSSGGGE
T ss_pred             cCCCc--------------ccHHHHHHHHHCC-CEEEEe--CCCCcccC
Confidence            97543              2345566677776 776666  46666543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.35  E-value=0.00098  Score=48.61  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -++++|+.|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.32  E-value=0.001  Score=48.44  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0014  Score=46.04  Aligned_cols=23  Identities=17%  Similarity=0.062  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ++=|+|-|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999998854

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.27  E-value=0.001  Score=46.93  Aligned_cols=27  Identities=15%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhc
Q 028239            2 SASKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         2 ~~~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ...+..-|.+.|.||||||||.+.|..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345667799999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.25  E-value=0.0012  Score=46.95  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.|++|+|||++++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999888653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0011  Score=47.72  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.+++.||||+||||++..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.22  E-value=0.0016  Score=47.09  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0013  Score=46.30  Aligned_cols=20  Identities=15%  Similarity=0.182  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|.|||||||+|+...|..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999988864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.0015  Score=47.37  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .|++.|+||+|||+|++.+.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.05  E-value=0.0015  Score=47.36  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478899999999999998864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.04  E-value=0.0022  Score=45.21  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCCcCccc--c----cccc--ccCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSR--L----RPLS--YRGADIFVLAFSLISRAS-YENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      +.+.++||+|...++.  .    ...+  .-..+-+++|.|++.... ...+ ......+     ++ --++.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~~~~~~-----~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SKFNQAS-----KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHHC-----TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH-hhhhccc-----Cc-ceEEEecccCCC
Confidence            3566999999654432  1    1111  224578899999876543 3333 2222211     22 346799999754


Q ss_pred             CccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q 028239          125 DRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKA  168 (211)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  168 (211)
                                    ..-.+..+....+. |+..++  +|++|++
T Consensus       168 --------------~~G~~l~~~~~~~l-Pi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 --------------KGGGALSAVAATGA-TIKFIG--TGEKIDE  194 (211)
T ss_dssp             --------------CHHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             --------------cccHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence                          34556667777777 776666  3666654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0021  Score=45.69  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ..+++.||+|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999888753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.98  E-value=0.0022  Score=46.60  Aligned_cols=20  Identities=20%  Similarity=0.283  Sum_probs=16.8

Q ss_pred             EEECCCCCCHHHHHHHHhcC
Q 028239           10 VTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus        10 ~viG~~~~GKSsli~~l~~~   29 (211)
                      ++.|+||+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            45699999999999988753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0032  Score=44.27  Aligned_cols=91  Identities=13%  Similarity=0.072  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCCcCcccc----c---cccc-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239           54 VNLGLWDTAGQEDYSRL----R---PLSY-----RGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKL  120 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~----~---~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  120 (211)
                      +.+.|+||+|-...+..    .   ....     ...+-.++|.|++.. +....+ ..++..+     + +-=++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~-----~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA-KLFHEAV-----G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH-HHHHHHS-----C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH-hhhhhcc-----C-CceEEEeec
Confidence            45679999994332210    0   1111     235688999998654 444444 3333322     2 235779999


Q ss_pred             CcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q 028239          121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKA  168 (211)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  168 (211)
                      |....              .-.+.......+. |+..++  +|++|++
T Consensus       165 De~~~--------------~G~~l~~~~~~~~-Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAK--------------GGVIFSVADQFGI-PIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTT--------------TTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred             CCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence            97543              2345566677776 776666  4666644

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0021  Score=46.80  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .+++.||||+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            599999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.002  Score=46.86  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      -.|++.||||+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            36999999999999999988764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.0032  Score=43.30  Aligned_cols=26  Identities=19%  Similarity=0.050  Sum_probs=21.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .++=|+|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            35778999999999999999886543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.82  E-value=0.0021  Score=50.54  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      +|+++||+|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0025  Score=45.11  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..+++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3589999999999999987754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0027  Score=44.94  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999988764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.60  E-value=0.0041  Score=43.62  Aligned_cols=92  Identities=14%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCCcCcccc----cccc--------ccCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCcEEEEeeCC
Q 028239           54 VNLGLWDTAGQEDYSRL----RPLS--------YRGADIFVLAFSLISR-ASYENVLKKWMPELRRFAPNVPIVLVGTKL  120 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  120 (211)
                      +.+.++||+|...++..    ...+        ....+-.++|.|++.. +....+ ..++..+     ++. -++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~-----~~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-KKFHEAV-----GLT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-HHHHHHH-----CCS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-HHhhhcc-----CCc-eEEEecc
Confidence            45679999996554421    1111        1245788999998765 445554 4444444     222 5679999


Q ss_pred             CcccCccccccccCCccccHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q 028239          121 DLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECSSKTQQNVKAV  169 (211)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  169 (211)
                      |....-              -.+..++...+. |+..++.  |++.+++
T Consensus       162 Det~~~--------------G~~l~~~~~~~~-Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         162 DGTAKG--------------GVLIPIVRTLKV-PIKFVGV--GEGPDDL  193 (207)
T ss_dssp             TSSCCC--------------TTHHHHHHHHCC-CEEEEEC--SSSTTCE
T ss_pred             CCCCCc--------------cHHHHHHHHHCC-CEEEEeC--CCChHhC
Confidence            975432              334556677776 6655553  4444433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.003  Score=46.15  Aligned_cols=24  Identities=17%  Similarity=0.138  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -.|++.|++|+|||+|++++...-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            369999999999999999987653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.0016  Score=50.26  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=22.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHH----hcCCCCCC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICY----TSNKFPTD   34 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l----~~~~~~~~   34 (211)
                      .+.-+++++|+||+|||+++..|    ..+..+..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~   75 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEG   75 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTT
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHH
Confidence            34557899999999999999644    44544443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.0044  Score=43.07  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.005  Score=45.89  Aligned_cols=25  Identities=20%  Similarity=0.080  Sum_probs=21.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ..++=|+|.|++||||||+.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4568899999999999999887753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.32  E-value=0.0063  Score=41.43  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+.-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999887653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.26  E-value=0.024  Score=37.66  Aligned_cols=24  Identities=25%  Similarity=0.160  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .=|++-|+-|+|||||++.+...-
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            348889999999999999888643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0061  Score=42.22  Aligned_cols=22  Identities=18%  Similarity=0.095  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++|.|+||+|||+|+..+..+.
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999998887654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0087  Score=44.05  Aligned_cols=24  Identities=17%  Similarity=0.003  Sum_probs=20.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHh
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~   27 (211)
                      ..++=|.|-|++|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            456778999999999999997653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.15  E-value=0.0054  Score=46.85  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      --+++.||||+|||+|+..+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.08  E-value=0.0072  Score=41.15  Aligned_cols=25  Identities=12%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      .-|++.|++|+|||++.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999987653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.006  Score=42.59  Aligned_cols=20  Identities=25%  Similarity=0.126  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.03  E-value=0.0032  Score=47.47  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998853

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.97  E-value=0.0038  Score=46.00  Aligned_cols=21  Identities=10%  Similarity=0.219  Sum_probs=15.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      =|+|.|++||||||+.++|.+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            399999999999999987743

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.0087  Score=44.74  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .++++||+|+|||.|.+.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999988754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.91  E-value=0.014  Score=40.59  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q 028239            7 IKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~   28 (211)
                      +=|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999987754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.0068  Score=42.91  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      -++|.|+||+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999887654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0077  Score=42.18  Aligned_cols=20  Identities=20%  Similarity=0.087  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998877643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.71  E-value=0.008  Score=42.84  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      =++|.|+||+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999998887544

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.70  E-value=0.01  Score=40.11  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      .-|++.|++|+||||+.-.+..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988887753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.016  Score=40.40  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      +=|+|.|..||||||+++.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            457899999999999999886544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.007  Score=42.93  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.47  E-value=0.011  Score=43.36  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .-|.|.|.+|+|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999988754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.30  E-value=0.012  Score=43.97  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999988753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.28  E-value=0.012  Score=41.76  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      =++|.|+||+|||+|+..+..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999888765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.22  E-value=0.014  Score=44.48  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q 028239            6 FIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-+++++||.|+|||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            34699999999999999998854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.016  Score=41.11  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      =++|.|+||+|||+|...+..+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999887643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.99  E-value=0.012  Score=40.83  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.=-+++.|++++|||.|++.+.+-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3446899999999999999887653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.85  E-value=0.019  Score=43.13  Aligned_cols=26  Identities=15%  Similarity=0.111  Sum_probs=22.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      ...++|.|=|.-|+||||+++.|...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            45789999999999999999988764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.0031  Score=43.30  Aligned_cols=18  Identities=17%  Similarity=0.431  Sum_probs=16.0

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 028239           10 VTVGDGAVGKTCMLICYT   27 (211)
Q Consensus        10 ~viG~~~~GKSsli~~l~   27 (211)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.019  Score=40.92  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -+++.|++|+|||+++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999987754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.017  Score=40.91  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.021  Score=39.72  Aligned_cols=21  Identities=5%  Similarity=0.146  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -+++.|++|+|||+++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.69  E-value=0.018  Score=40.68  Aligned_cols=22  Identities=23%  Similarity=0.039  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ++|.|++|+|||+|+..+..+.
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6889999999999998887543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.49  E-value=0.02  Score=44.14  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 028239            9 CVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~~   30 (211)
                      |+|.|+.|+||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999998753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.31  E-value=0.015  Score=42.84  Aligned_cols=17  Identities=24%  Similarity=0.384  Sum_probs=15.7

Q ss_pred             EEECCCCCCHHHHHHHH
Q 028239           10 VTVGDGAVGKTCMLICY   26 (211)
Q Consensus        10 ~viG~~~~GKSsli~~l   26 (211)
                      +++|+-|+|||+++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68899999999999877

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.22  E-value=0.025  Score=39.58  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.+.|++|+|||-|+..+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.18  E-value=0.018  Score=42.19  Aligned_cols=15  Identities=27%  Similarity=0.671  Sum_probs=13.3

Q ss_pred             EEEECCCCCCHHHHH
Q 028239            9 CVTVGDGAVGKTCML   23 (211)
Q Consensus         9 I~viG~~~~GKSsli   23 (211)
                      ++|+|++|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.03  E-value=0.026  Score=39.45  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=16.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 028239            8 KCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~   27 (211)
                      -++|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36789999999999987654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.02  E-value=0.031  Score=41.85  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      .-++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.026  Score=39.48  Aligned_cols=20  Identities=20%  Similarity=0.067  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999987754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.91  E-value=0.022  Score=42.71  Aligned_cols=26  Identities=15%  Similarity=0.126  Sum_probs=22.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      ..++|.|=|..|+||||+++.|...-
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999987643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.83  E-value=0.035  Score=41.34  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             Ccee-EEEEECCCCCCHHHHHHHHhc
Q 028239            4 SKFI-KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         4 ~~~~-~I~viG~~~~GKSsli~~l~~   28 (211)
                      .++. .++++|++|+|||.+.+.+..
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHH
Confidence            3444 578889999999999987754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.63  E-value=0.03  Score=42.85  Aligned_cols=18  Identities=22%  Similarity=0.398  Sum_probs=16.1

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 028239           10 VTVGDGAVGKTCMLICYT   27 (211)
Q Consensus        10 ~viG~~~~GKSsli~~l~   27 (211)
                      +|+|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999873

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.62  E-value=0.035  Score=40.11  Aligned_cols=20  Identities=10%  Similarity=0.164  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999877653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.55  E-value=0.026  Score=41.66  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=13.4

Q ss_pred             EEEECCCCCCHHHHH
Q 028239            9 CVTVGDGAVGKTCML   23 (211)
Q Consensus         9 I~viG~~~~GKSsli   23 (211)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.23  E-value=0.042  Score=38.80  Aligned_cols=21  Identities=19%  Similarity=-0.007  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 028239            8 KCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~   28 (211)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.047  Score=42.12  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .++|+|.+|+|||+++..+...
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999998776643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.55  E-value=0.055  Score=39.22  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+.--+.+.|++++|||+|++.+..-
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34556889999999999999988653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.051  Score=39.08  Aligned_cols=19  Identities=21%  Similarity=0.354  Sum_probs=16.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 028239            9 CVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~   27 (211)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999997664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.43  E-value=0.056  Score=39.56  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999877653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.062  Score=40.69  Aligned_cols=18  Identities=28%  Similarity=0.314  Sum_probs=15.1

Q ss_pred             EEEECCCCCCHHHHHHHH
Q 028239            9 CVTVGDGAVGKTCMLICY   26 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l   26 (211)
                      .+|.|+||+|||+++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            678899999999988543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.92  E-value=0.34  Score=32.41  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             CCceeEEEEECC-CCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-------------c-
Q 028239            3 ASKFIKCVTVGD-GAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-------------Y-   67 (211)
Q Consensus         3 ~~~~~~I~viG~-~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------------~-   67 (211)
                      ..+.+||+|+|. .+.|-+. +-.|..+..-+..                ..+.+.+.|.+....             + 
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l-~~~La~g~v~g~~----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHL-LFKLASGEVFGQD----------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHH-HHHHHHTTTTCTT----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             cCCCcEEEEECCCcHHHHHH-HHHHHcCcccCCC----------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            346789999996 7777654 4455554432211                124456667655210             0 


Q ss_pred             -------cccccccccCCcEEEEEEECCCh--hhHHHH-------HHHHHHHHhhhCC-CCcEEEEeeCCC
Q 028239           68 -------SRLRPLSYRGADIFVLAFSLISR--ASYENV-------LKKWMPELRRFAP-NVPIVLVGTKLD  121 (211)
Q Consensus        68 -------~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~-------~~~~~~~~~~~~~-~~p~ivv~nK~D  121 (211)
                             .......+.++|+++++-.....  .+-.++       .+.+...+.++.+ +.-+++|+|=.|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                   01112247889999988765321  222222       3455555666654 555667777666

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.66  E-value=0.1  Score=37.19  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      .-|+|.|++|+||+.+.+.+....
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhc
Confidence            358999999999999998886543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.43  E-value=0.53  Score=30.45  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=55.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCC----------------
Q 028239            1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQ----------------   64 (211)
Q Consensus         1 m~~~~~~~I~viG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~----------------   64 (211)
                      |.+....||.|+|..++|.+........+.. +                     ++.++|....                
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~-~---------------------el~L~Di~~~~~~g~a~Dl~~~~~~~   58 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIA-D---------------------EIVLIDANESKAIGDAMDFNHGKVFA   58 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCC-S---------------------EEEEECSSHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCC-c---------------------eEEEEeeccccccchhccHhhCcccc
Confidence            7788889999999888887665544443321 1                     1334553320                


Q ss_pred             ---cCccccccccccCCcEEEEEEECCCh------hhHH---HHHHHHHHHHhhhCCCCcEEEEeeCCCc
Q 028239           65 ---EDYSRLRPLSYRGADIFVLAFSLISR------ASYE---NVLKKWMPELRRFAPNVPIVLVGTKLDL  122 (211)
Q Consensus        65 ---~~~~~~~~~~~~~~d~~i~v~d~~~~------~s~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  122 (211)
                         ..........+.++|.+++..-....      +-+.   .+...+.+.+.+..|+.-+++|-|=+|.
T Consensus        59 ~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~  128 (148)
T d1ldna1          59 PKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI  128 (148)
T ss_dssp             SSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred             CCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHH
Confidence               00001112347788988886554221      1111   1124556666677677766666666663

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.22  E-value=0.12  Score=37.22  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.+.|++++|||+|+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            578999999999999766554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.02  E-value=0.34  Score=31.22  Aligned_cols=45  Identities=7%  Similarity=0.213  Sum_probs=25.6

Q ss_pred             cccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCccc
Q 028239           74 SYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRE  124 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  124 (211)
                      ...+.|++++    +..+-|.+........+...  +.+|++.|...|-..
T Consensus        77 ~~~~~dvI~I----DE~QFf~d~~~~~~~~l~~~--g~~Viv~GLd~Df~~  121 (141)
T d1xx6a1          77 FEEDTEVIAI----DEVQFFDDEIVEIVNKIAES--GRRVICAGLDMDFRG  121 (141)
T ss_dssp             CCTTCSEEEE----CSGGGSCTHHHHHHHHHHHT--TCEEEEEECSBCTTS
T ss_pred             hcccccEEEE----eehhhccccHHHHHHhheeC--CcEEEEEEecccccc
Confidence            3455675442    35455544312334444443  789999998888533

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.44  E-value=0.99  Score=30.90  Aligned_cols=65  Identities=11%  Similarity=0.038  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCCcCccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcEE-EEeeCCCccc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLRE  124 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~  124 (211)
                      +.+.++|+|+....  .....+..+|.++++... +..++... ..+...+.+.  +.|++ +|.|+.+...
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~~--~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDT-MKVGIVLKKA--GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHH-HHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred             CCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchh-hHHHHHHhhh--hhhhhhhhhccccccc
Confidence            66779999986432  223346679999999885 45566666 5666666654  67766 8899988654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.36  E-value=0.28  Score=32.05  Aligned_cols=101  Identities=17%  Similarity=0.279  Sum_probs=54.0

Q ss_pred             CceeEEEEEC-CCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCCcC-------------cc
Q 028239            4 SKFIKCVTVG-DGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQED-------------YS   68 (211)
Q Consensus         4 ~~~~~I~viG-~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------------~~   68 (211)
                      ++++||+|+| ..++|.+.... |..+. +...                 ....+.++|.+....             +.
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~-l~~~~~~~~~-----------------~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~   62 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYS-IGNGSVFGKD-----------------QPIILVLLDITPMMGVLDGVLMELQDCALP   62 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHH-HHTTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHHTCCT
T ss_pred             CCceEEEEECCCCHHHHHHHHH-HHHHHhcCCC-----------------CccEEEEecCccchhhhhhhhhhhcccccc
Confidence            4679999999 58899876654 44433 3211                 124455676654110             00


Q ss_pred             --------ccccccccCCcEEEEEEECCC------hhhHH---HHHHHHHHHHhhhCCCCc-EEEEeeCCCc
Q 028239           69 --------RLRPLSYRGADIFVLAFSLIS------RASYE---NVLKKWMPELRRFAPNVP-IVLVGTKLDL  122 (211)
Q Consensus        69 --------~~~~~~~~~~d~~i~v~d~~~------~~s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  122 (211)
                              ......+.++|++++.-....      .+-+.   .+...+...+.++.++.- ++++.|-+|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          63 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence                    011224678888877654321      11122   123555556666666555 4556677763

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.34  E-value=0.11  Score=37.62  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998877654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.26  E-value=0.14  Score=36.56  Aligned_cols=83  Identities=11%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCCcCccccc-cccccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcE-EEEeeCCCcccCcccc
Q 028239           54 VNLGLWDTAGQEDYSRLR-PLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPI-VLVGTKLDLREDRGYL  129 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-ivv~nK~Dl~~~~~~~  129 (211)
                      +.+.++|+|+.-...... ......+|.++++.+. +..++... ......+....  .+.++ -++.|+.+....    
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVANE----  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCCc----
Confidence            556799998754332221 2223457888877765 55666665 55555555443  23333 367788775432    


Q ss_pred             ccccCCccccHHHHHHHHHHhCC
Q 028239          130 ADHVGSNVITTAQGEELRKQIGA  152 (211)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~  152 (211)
                                .+..+++.+..+.
T Consensus       190 ----------~~~~~~~~~~~~~  202 (269)
T d1cp2a_         190 ----------YELLDAFAKELGS  202 (269)
T ss_dssp             ----------HHHHHHHHHHHTC
T ss_pred             ----------cchhhhhHhhcCC
Confidence                      2345556666665

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.02  E-value=0.99  Score=29.85  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=42.1

Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcccCccccccccCCccccHHHHHHHHHHhCCceEEEec
Q 028239           87 LISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYLADHVGSNVITTAQGEELRKQIGAAAYIECS  159 (211)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (211)
                      .+|..+++.......+.+...  +.|+|++|.......              ..++..++++..++ |++.+-
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt~   57 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVATMA   57 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEEEG
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEecc
Confidence            356777777767777777655  899999998886543              45778899999998 776544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.75  E-value=0.23  Score=31.13  Aligned_cols=26  Identities=15%  Similarity=0.040  Sum_probs=22.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Q 028239            4 SKFIKCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         4 ~~~~~I~viG~~~~GKSsli~~l~~~   29 (211)
                      .+-+.|.+-|..++||++|.+.|...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHH
Confidence            35688999999999999999988654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.58  E-value=0.79  Score=29.45  Aligned_cols=92  Identities=16%  Similarity=0.370  Sum_probs=53.7

Q ss_pred             EEEEEC-CCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC---------Cc-Ccc--------
Q 028239            8 KCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAG---------QE-DYS--------   68 (211)
Q Consensus         8 ~I~viG-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~D~~G---------~~-~~~--------   68 (211)
                      ||.|+| ...+| +++...+..+.+.++                     +.++|...         +. .+.        
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~~~e---------------------lvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~   59 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPLVSR---------------------LTLYDIAHTPGVAADLSHIETRATVKGYLGP   59 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTTCSE---------------------EEEEESSSHHHHHHHHTTSSSSCEEEEEESG
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCccce---------------------EEEEeccccchhhHHHhhhhhhcCCCeEEcC
Confidence            899999 58999 566777776665332                     33555543         00 000        


Q ss_pred             ccccccccCCcEEEEEEECCC-----hhh-H---HHHHHHHHHHHhhhCCCCcEEEEeeCCC
Q 028239           69 RLRPLSYRGADIFVLAFSLIS-----RAS-Y---ENVLKKWMPELRRFAPNVPIVLVGTKLD  121 (211)
Q Consensus        69 ~~~~~~~~~~d~~i~v~d~~~-----~~s-~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D  121 (211)
                      ..+...++++|++++..-...     +.. +   -.+.+.+.+.+.+..|+.-++++.|=.|
T Consensus        60 ~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD  121 (144)
T d1mlda1          60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN  121 (144)
T ss_dssp             GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            111234678998888755311     111 1   1223566666767777777777777776

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=86.91  E-value=0.76  Score=31.53  Aligned_cols=22  Identities=27%  Similarity=0.202  Sum_probs=18.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 028239            6 FIKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         6 ~~~I~viG~~~~GKSsli~~l~   27 (211)
                      .--|+++|++||||||.+-+|.
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3457899999999999987764

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.76  E-value=0.14  Score=34.56  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.92  E-value=0.25  Score=31.80  Aligned_cols=33  Identities=6%  Similarity=0.159  Sum_probs=20.0

Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCcEEEEeeCCCcc
Q 028239           89 SRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR  123 (211)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  123 (211)
                      ..+-|.+....+...+...  +++|++.|...|-.
T Consensus        87 E~QFf~d~i~~~~~~~~~~--g~~Viv~GLd~Df~  119 (139)
T d2b8ta1          87 EVQFFDDRICEVANILAEN--GFVVIISGLDKNFK  119 (139)
T ss_dssp             SGGGSCTHHHHHHHHHHHT--TCEEEEECCSBCTT
T ss_pred             hhhhcchhHHHHHHHHHhc--CceEEEEEeccccc
Confidence            4444544324455555544  78889988887753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=84.76  E-value=1.4  Score=30.19  Aligned_cols=25  Identities=16%  Similarity=-0.015  Sum_probs=15.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHh
Q 028239            3 ASKFIKCVTVGDGAVGKTCMLICYT   27 (211)
Q Consensus         3 ~~~~~~I~viG~~~~GKSsli~~l~   27 (211)
                      ..++.=|+++|++|+||||.+-+|.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3445568889999999999987665

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=83.95  E-value=1.3  Score=28.43  Aligned_cols=25  Identities=36%  Similarity=0.530  Sum_probs=17.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTSNK   30 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~~~   30 (211)
                      +..||.|+|..++|-+ +...+....
T Consensus         4 ~~~KI~IIGaG~VG~~-~A~~l~~~~   28 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSS-YAFAMAQQG   28 (146)
T ss_dssp             TBCEEEEECCSHHHHH-HHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHH-HHHHHHhcC
Confidence            4579999999888965 455555544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.40  E-value=0.37  Score=32.87  Aligned_cols=24  Identities=8%  Similarity=-0.039  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Q 028239            5 KFIKCVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         5 ~~~~I~viG~~~~GKSsli~~l~~   28 (211)
                      ....+++-|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999987765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.20  E-value=0.36  Score=34.64  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=25.9

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCC
Q 028239           79 DIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKL  120 (211)
Q Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~  120 (211)
                      +.+++|-.. +..+..+. .+.++.+...  ++|+ -+|+|+.
T Consensus       199 t~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             ceeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCC
Confidence            356666554 45667777 7777888776  6665 4778996

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=0.39  Score=34.27  Aligned_cols=40  Identities=8%  Similarity=-0.056  Sum_probs=23.5

Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCcE-EEEeeCCC
Q 028239           78 ADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPI-VLVGTKLD  121 (211)
Q Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  121 (211)
                      ++.+++|... +..++.++ ..+.+.+...  +.|+ -+|.|+.-
T Consensus       183 ~~~~vlV~~p-~~~~~~~~-~r~~~~l~~~--~~~~~~iV~N~~~  223 (279)
T d1ihua2         183 RTKVLLVTLP-ETTPVLEA-ANLQADLERA--GIHPWGWIINNSL  223 (279)
T ss_dssp             TEEEEEEECS-SHHHHHHH-HHHHHHHHHT--TCCCCEEEEEEES
T ss_pred             cccceEeccc-cHhHHHHH-HHHHHHHHhc--CCCccEEEEcCCc
Confidence            4566666443 45666676 6667777665  3343 35567753

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.28  Score=36.01  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=13.2

Q ss_pred             EEECCCCCCHHHHH
Q 028239           10 VTVGDGAVGKTCML   23 (211)
Q Consensus        10 ~viG~~~~GKSsli   23 (211)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999987

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.47  E-value=0.42  Score=34.35  Aligned_cols=20  Identities=20%  Similarity=0.220  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 028239            9 CVTVGDGAVGKTCMLICYTS   28 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~   28 (211)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999866653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.32  E-value=0.41  Score=34.47  Aligned_cols=67  Identities=10%  Similarity=0.077  Sum_probs=35.4

Q ss_pred             EEEEEEeCCCCcCcccccccc-ccCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCcE-EEEeeCCCc
Q 028239           54 VNLGLWDTAGQEDYSRLRPLS-YRGADIFVLAFSLISRASYENVLKKWMPELRRFA--PNVPI-VLVGTKLDL  122 (211)
Q Consensus        54 ~~l~l~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-ivv~nK~Dl  122 (211)
                      +.+.++|+|+.-......... ...++.++++.. .+..++..+ ..+.+.+....  ++.++ -+|.|+.+.
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~  189 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNT  189 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcc
Confidence            556689998754322221111 235666666644 455555555 44444444332  34554 377888763

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.26  E-value=0.3  Score=35.51  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 028239            8 KCVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         8 ~I~viG~~~~GKSsli~~l~~~   29 (211)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998766543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.94  E-value=0.41  Score=34.39  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 028239            9 CVTVGDGAVGKTCMLICYTSN   29 (211)
Q Consensus         9 I~viG~~~~GKSsli~~l~~~   29 (211)
                      +.+.|++++|||+|+-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            568999999999999776653

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.53  E-value=0.3  Score=36.02  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=13.5

Q ss_pred             EEEECCCCCCHHHHH
Q 028239            9 CVTVGDGAVGKTCML   23 (211)
Q Consensus         9 I~viG~~~~GKSsli   23 (211)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            389999999999987

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.49  E-value=1.5  Score=28.32  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             cccCCcEEEEEEECCChh--hHH-------HHHHHHHHHHhhhCC-CCcEEEEeeCCCc
Q 028239           74 SYRGADIFVLAFSLISRA--SYE-------NVLKKWMPELRRFAP-NVPIVLVGTKLDL  122 (211)
Q Consensus        74 ~~~~~d~~i~v~d~~~~~--s~~-------~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl  122 (211)
                      .++++|.+++.......+  +-.       .+.+.+...+.++.+ +.-++++.|-.|.
T Consensus        77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            578899999877653221  111       113555566666654 4445566776663

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.46  E-value=0.37  Score=35.50  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.6

Q ss_pred             EEEECCCCCCHHHHH
Q 028239            9 CVTVGDGAVGKTCML   23 (211)
Q Consensus         9 I~viG~~~~GKSsli   23 (211)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=80.40  E-value=2.7  Score=26.52  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=17.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q 028239            7 IKCVTVGDGAVGKTCMLICYTSNKF   31 (211)
Q Consensus         7 ~~I~viG~~~~GKSsli~~l~~~~~   31 (211)
                      +||.|+|..++|.+ +...+.....
T Consensus         1 mKI~IIGaG~VG~~-la~~l~~~~l   24 (142)
T d1guza1           1 MKITVIGAGNVGAT-TAFRLAEKQL   24 (142)
T ss_dssp             CEEEEECCSHHHHH-HHHHHHHTTC
T ss_pred             CEEEEECcCHHHHH-HHHHHHhCCC
Confidence            58999998778887 4555555543