Citrus Sinensis ID: 028252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MGLHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGFNAEGCSNYRRNY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccccccEEEEEEcccEEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccEEEEEEEEEcccccccccccccEEEEEEccEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccccEEEEEcEEEEEEEcccccccEEEEEEEEccHccccccccccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHccccHcccccccccEEEEEEccccccccccccEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MGLHLVPIVLPVCLVLSGFAiamesphyavvhsesdfEIRLYGEAFWASALVQRssfqnstkqGFHRLYQYIHganlnsarfpvtapvltsinpttangsVCYVKIYLtaksppqpnselnLEIEKWTSHCIAVRkfsgfakddnINKEVEALMNSLnlhftgntsitedkLSYTIAQYNssrhqagrlnevwmnvpgfnaegcsnyrrny
Flexible Loop (DISEMBL)
MGLHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNvpgfnaegcsnyrrny
Low Complexity Region (SEG)
MGlhlvpivlpvclvlSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGFNAEGCSNYRRNY
Disordered region (IsUnstruct)
**LHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTA*********LNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGFNAEG********
Disordered Region (DISOPRED)
*GLHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINP*******CYV****************NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGFN***********
Disordered Region (DISEMBL)
MGLHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGFNAEGCSNYRRNY
Disordered Region (DISPRO)
MGLHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGF******N*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPGFNAEGCSNYRRNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9WU63	205	Heme-binding protein 2 OS	yes	no	0.725	0.746	0.296	8e-12
Q9Y5Z4	205	Heme-binding protein 2 OS	yes	no	0.720	0.741	0.306	9e-12
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.744	0.826	0.279	1e-07
Q6DJ66	190	Heme-binding protein 1 OS	no	no	0.715	0.794	0.263	5e-06
Q5ZMB2	189	Heme-binding protein 1 OS	no	no	0.663	0.740	0.276	1e-05

>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           +EIR YG A W S  V+   + ++ + GF +L  YI G N    +  +TAPV + + P +
Sbjct: 38  YEIRHYGPAKWVSTCVESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGS 97

Query: 97  A--NGSVCYVKIYLTAKSPPQP--NSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEA 152
           +  + S   + +Y+ ++  P P   SE ++ IE      + VR F GF+      +++  
Sbjct: 98  SPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLT 157

Query: 153 LMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
           L N L         +  +K+ YT A Y+S      R NEVW+
Sbjct: 158 LANILREE----GKVFNEKVFYT-AGYSSPFQLLDRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin (By similarity). May have low affinity for heme.
Mus musculus (taxid: 10090)

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           +EIR YG A W S  V+   + ++ + GF +L  YI G N    +  +TAPV + + P +
Sbjct: 38  YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 97

Query: 97  A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
              + S   + +Y+ ++    PP+P  E ++ IE      + VR F GF+   +  K  E
Sbjct: 98  GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEMTVFVRSFDGFS---SAQKNQE 153

Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
            L+ +L      +  + ++K+ YT A YNS      R NEVW+
Sbjct: 154 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.

Homo sapiens (taxid: 9606)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 15/172 (8%)

Query: 30  VVHSESD---FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTA 86
           V   E D   FE R Y    + S  V    F  ++K+G  RL +Y+ G+N  SA   +T+
Sbjct: 21  VSKGEKDGVAFEEREYEGGKFISTEVSGKPFDEASKEGVLRLLKYVGGSNNKSAGMGMTS 80

Query: 87  PVLTSINPTTANGSVCYVKIYLTAKS-----PPQPNSELNLEIEKWTSHCIAVRKFSGFA 141
           PV+ +  P+  +     VK+ L   S     PP P ++  ++IE   S  +   +F G+A
Sbjct: 81  PVIINSYPSENDTLQPNVKVLLRIPSQYQADPPVP-TDNTIQIEDRESVTLYSTQFGGYA 139

Query: 142 KDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVW 193
                 KE + + ++  L       I+     Y    Y+      GR NEVW
Sbjct: 140 ------KEADYVSHAAKLRSCLGPDISYHSDYYMCCGYDPPMKPYGRRNEVW 185

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 12/163 (7%)

Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           FE R Y    + S  V    F  ++K+   RL +Y+ G+N   A   +T+PV+ +  P  
Sbjct: 31  FEEREYEGGKFVSTEVSGKPFDEASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSYPAE 90

Query: 97  ANGSVCYVKIYLTAKS-----PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
                  VK+ L   S     PP P  +  + IE   S      +F G+AK+ +      
Sbjct: 91  NETLQPNVKVLLRIPSQYQADPPVPTDD-TIHIEDRESVTFYSTQFGGYAKEADYVSHAA 149

Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
            L + L    + +T        Y    Y+      GR NEVW 
Sbjct: 150 KLRSCLGPDISYHTD------HYMCCGYDPPMKPYGRRNEVWF 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 47  WASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKI 106
           +A   V    F  ++K+   +L +Y+ G+N   A   +TAPV  +  P         VK+
Sbjct: 41  FAVVEVTGKPFDEASKEAALKLLKYVGGSNDKGAGMGMTAPVSITAFPAEDGSLQQKVKV 100

Query: 107 YLT-----AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHF 161
           YL        SPP P+ E +++IE+     I   +F G+A      KEV+ +  +  L  
Sbjct: 101 YLRIPNQFQASPPCPSDE-SIKIEERQGMTIYSTQFGGYA------KEVDYVNYAAKLKT 153

Query: 162 TGNTSITEDKLSYTIAQYNSSRHQAGRLNEVW 193
              +     K  Y    Y+      GR NEVW
Sbjct: 154 ALGSEAAYRKDFYFCNGYDPPMKPYGRRNEVW 185

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
255573971	210	Heme-binding protein, putative [Ricinus	0.933	0.938	0.580	3e-62
225425621	212	PREDICTED: uncharacterized protein LOC10	0.966	0.962	0.561	5e-60
224107803	221	predicted protein [Populus trichocarpa]	0.900	0.859	0.6	1e-59
449435406	237	PREDICTED: heme-binding protein 2-like [	0.848	0.755	0.564	9e-52
449532372	188	PREDICTED: heme-binding protein 2-like,	0.848	0.952	0.564	2e-51
351720967	209	uncharacterized protein LOC100500604 [Gl	0.843	0.851	0.531	2e-46
224135859	220	predicted protein [Populus trichocarpa]	0.957	0.918	0.478	4e-43
224119478	194	predicted protein [Populus trichocarpa]	0.867	0.943	0.505	7e-43
225456963	240	PREDICTED: heme-binding protein 2-like [	0.952	0.837	0.488	5e-42
297733745	248	unnamed protein product [Vitis vinifera]	0.919	0.782	0.492	1e-41

>gi|255573971|ref|XP_002527903.1| Heme-binding protein, putative [Ricinus communis] gi|223532678|gb|EEF34460.1| Heme-binding protein, putative [Ricinus communis]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 150/205 (73%), Gaps = 8/205 (3%)

Query: 5   LVPIVLPVC-----LVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQN 59
           L+ +   +C     LV  G AI   SP+Y ++HSESD+E+RLY E  W SALVQ SSFQ 
Sbjct: 6   LILVAATICFGASNLVFYGHAIG--SPNYTLLHSESDYELRLYREVSWISALVQGSSFQK 63

Query: 60  STKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSE 119
           STK GFHR+YQYIHG NLNSA+ P+TAPVLTSI P++   +V YV+++L   +PPQPN E
Sbjct: 64  STKDGFHRIYQYIHGENLNSAQLPMTAPVLTSIVPSST-ATVHYVRLFLNKSNPPQPNPE 122

Query: 120 LNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQY 179
           LNL+  KW + CIAVR FSGFA+DDN+ KE+E L+ SL  H TGNT++  D  SYTIAQY
Sbjct: 123 LNLQFTKWRAQCIAVRNFSGFAEDDNVKKEMEGLVASLTKHSTGNTAVINDTSSYTIAQY 182

Query: 180 NSSRHQAGRLNEVWMNVPGFNAEGC 204
           NSS +Q+ R NEVW++V G N +GC
Sbjct: 183 NSSHYQSRRYNEVWIDVSGVNIDGC 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425621|ref|XP_002266261.1| PREDICTED: uncharacterized protein LOC100250014 [Vitis vinifera] gi|297739097|emb|CBI28586.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 151/210 (71%), Gaps = 6/210 (2%)

Query: 5   LVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQG 64
           LV I     LV+SG AI  +SP Y VVHS+SDF+IRLY ++ W SA V  +SF  STK  
Sbjct: 6   LVLIAYLSFLVVSGHAI--DSPQYTVVHSQSDFQIRLYRQSSWMSATVHGTSFNKSTKDA 63

Query: 65  FHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTAK---SPPQPNSELN 121
           FHRLY+YIHGANLNS++F +TAPVLTS+ P+ A GS   V+ + + K   SPPQP  ELN
Sbjct: 64  FHRLYKYIHGANLNSSQFAITAPVLTSVTPS-ALGSEYTVRFFFSPKYEESPPQPYPELN 122

Query: 122 LEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNS 181
           L+ +KW SHC+AVR F GFAKDD I+KE++AL  SL+ +  G +++ E+K SYTIAQYN+
Sbjct: 123 LQFDKWRSHCVAVRVFPGFAKDDTISKEIKALETSLDDYLFGKSAVLEEKNSYTIAQYNA 182

Query: 182 SRHQAGRLNEVWMNVPGFNAEGCSNYRRNY 211
           S H  GR+NEVW+N+ G  AEGC +Y   Y
Sbjct: 183 SYHPTGRVNEVWLNISGLTAEGCPSYGGKY 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107803|ref|XP_002314606.1| predicted protein [Populus trichocarpa] gi|222863646|gb|EEF00777.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 150/200 (75%), Gaps = 10/200 (5%)

Query: 12  VCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASA-LVQRSSFQNSTKQGFHRLYQ 70
           + LV SG A+  ESP Y ++H +SDFEIRLY +  W SA ++Q +SFQ STK GFHRLYQ
Sbjct: 20  INLVFSGQAV--ESPEYTLIHQQSDFEIRLYKDISWMSAPVLQATSFQKSTKAGFHRLYQ 77

Query: 71  YIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLTA---KSPPQPNSELNLEIEKW 127
           YIHGANLNS +  +TAPVLT+I     +GS  +VK+ L+A    +PPQPNSEL+L++EKW
Sbjct: 78  YIHGANLNSTQLAMTAPVLTTIT-EAPHGSSFFVKMSLSAYYEGTPPQPNSELDLQLEKW 136

Query: 128 TSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAG 187
            + CIA+RKFSGFA+DDNI +EVEAL  SLN H+ G     E+K SYTIAQYN+S H +G
Sbjct: 137 RAKCIAIRKFSGFARDDNIGEEVEALGTSLNEHWNGT---LENKSSYTIAQYNASNHLSG 193

Query: 188 RLNEVWMNVPGFNAEGCSNY 207
           R NEVWM V GF AEGCS++
Sbjct: 194 RFNEVWMAVSGFGAEGCSSH 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435406|ref|XP_004135486.1| PREDICTED: heme-binding protein 2-like [Cucumis sativus]

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 133/186 (71%), Gaps = 7/186 (3%)

Query: 22  AMESPHYAVVHSESDFEIRLYGEAFWASALVQ-RSSFQNSTKQGFHRLYQYIHGANLNSA 80
            +ESPHY V+H ESDFEIR Y +  W SALVQ  +SF+ ST+QGFHRLYQY+HGAN NS 
Sbjct: 53  VIESPHYKVIHVESDFEIRQYKQISWMSALVQGTASFEKSTEQGFHRLYQYMHGANSNSY 112

Query: 81  RFPVTAPVLTSINPTTANGS--VCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFS 138
            F  T+PV T+I   T      V Y    + A++PP PNSELN+  EKW ++C+AVR+F 
Sbjct: 113 HFLFTSPVTTTIMTLTREPERLVRYYLPIMNAENPPLPNSELNVHFEKWRNNCLAVRRFP 172

Query: 139 GFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPG 198
           GFAKDDNINKE++AL +SL+ +   + +++E    YTIAQYNSSR   GRLNEVW++V G
Sbjct: 173 GFAKDDNINKEIDALKSSLSKYLPESAAVSE----YTIAQYNSSRRLLGRLNEVWLDVSG 228

Query: 199 FNAEGC 204
           F  EGC
Sbjct: 229 FTTEGC 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532372|ref|XP_004173155.1| PREDICTED: heme-binding protein 2-like, partial [Cucumis sativus]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 133/186 (71%), Gaps = 7/186 (3%)

Query: 22  AMESPHYAVVHSESDFEIRLYGEAFWASALVQ-RSSFQNSTKQGFHRLYQYIHGANLNSA 80
            +ESPHY V+H ESDFEIR Y +  W SALVQ  +SF+ ST+QGFHRLYQY+HGAN NS 
Sbjct: 4   VIESPHYKVIHVESDFEIRQYKQISWMSALVQGTASFEKSTEQGFHRLYQYMHGANSNSY 63

Query: 81  RFPVTAPVLTSINPTTANGS--VCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFS 138
            F  T+PV T+I   T      V Y    + A++PP PNSELN+  EKW ++C+AVR+F 
Sbjct: 64  HFLFTSPVTTTIMTLTREPERLVRYYLPIMNAENPPLPNSELNVHFEKWRNNCLAVRRFP 123

Query: 139 GFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPG 198
           GFAKDDNINKE++AL +SL+ +   + +++E    YTIAQYNSSR   GRLNEVW++V G
Sbjct: 124 GFAKDDNINKEIDALKSSLSKYLPESAAVSE----YTIAQYNSSRRLLGRLNEVWLDVSG 179

Query: 199 FNAEGC 204
           F  EGC
Sbjct: 180 FTTEGC 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720967|ref|NP_001236682.1| uncharacterized protein LOC100500604 [Glycine max] gi|255630738|gb|ACU15730.1| unknown [Glycine max]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 129/188 (68%), Gaps = 10/188 (5%)

Query: 22  AMESPHYAVV-HSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSA 80
           A+E P+Y V+   ESDF++RLY E+ W SA V  +SF+ S K GF RLYQYIHGAN NS+
Sbjct: 27  AIELPNYTVILPEESDFQLRLYNESSWISARVSGTSFEQSYKLGFSRLYQYIHGANSNSS 86

Query: 81  RFPVTAPVLTSINPTTANGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKF 137
           +   TAPVLTS+ P++  G    V+++ +      PPQPN EL L IEKW + CIAVRKF
Sbjct: 87  KIAFTAPVLTSV-PSSPPGDDYIVRMFASTHFQGKPPQPNPELKLRIEKWKTQCIAVRKF 145

Query: 138 SGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ-AGRLNEVWMNV 196
           +G+AKDDNINKE+EAL+ +LN     N++  +D   YTIA+YN+S H  A RLNEVW+ V
Sbjct: 146 TGYAKDDNINKEIEALVTTLN----KNSATIQDTSFYTIAKYNASSHNTADRLNEVWIKV 201

Query: 197 PGFNAEGC 204
            G   E C
Sbjct: 202 SGVRTEYC 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135859|ref|XP_002322178.1| predicted protein [Populus trichocarpa] gi|222869174|gb|EEF06305.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 130/209 (62%), Gaps = 7/209 (3%)

Query: 3   LHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTK 62
           L L+P +  V L L     A+ESP YAVVH+ESDFE+RLY  + W SA V   SF+ +T 
Sbjct: 8   LFLLPGI--VVLDLVCLCKAIESPQYAVVHAESDFEVRLYVNSTWMSAPVNELSFEKATL 65

Query: 63  QGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTA--NGSVCYVKIYLTAK---SPPQPN 117
            GFHRL+QYI GANLNS+R  +TAPV+TSI P       S   V+ YL  K    PP P 
Sbjct: 66  FGFHRLFQYIQGANLNSSRIAMTAPVVTSIVPGAGPFRSSAYIVRFYLPVKFQADPPVPL 125

Query: 118 SELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIA 177
            EL+L+   W S C+AVRKFSG+AKD+N+ +E + L  SL++    N + TE+  SY+IA
Sbjct: 126 DELHLKPYTWNSRCVAVRKFSGYAKDENVAREAKRLAVSLSMSPWVNVTSTENNCSYSIA 185

Query: 178 QYNSSRHQAGRLNEVWMNVPGFNAEGCSN 206
           QY+S      R NEVW ++    A GC +
Sbjct: 186 QYDSPFQFIHRTNEVWADIKAPGANGCQS 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119478|ref|XP_002318082.1| predicted protein [Populus trichocarpa] gi|222858755|gb|EEE96302.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 120/188 (63%), Gaps = 5/188 (2%)

Query: 24  ESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFP 83
           ESP YAVVH+E DFE+RLY  + W SA V   SF+ +T  GFHRL+QYI GANLN +R  
Sbjct: 1   ESPQYAVVHAEPDFEVRLYVNSTWMSAPVNELSFEKATLFGFHRLFQYIQGANLNYSRIA 60

Query: 84  VTAPVLTSINPTTA--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFS 138
           VT PV+TSI P       S   V+ YL  K    PP P  EL+L+   W SHC+AVRKFS
Sbjct: 61  VTVPVVTSIVPGAGPFRSSAYVVRFYLPVKLQADPPVPLDELHLKPYAWNSHCVAVRKFS 120

Query: 139 GFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPG 198
           G+AKD+NI +E + L +SL+     N S TE   SY+IAQY+S     GR NEVW ++  
Sbjct: 121 GYAKDENIAEEAKRLADSLSRSPWANLSSTESNYSYSIAQYDSPFQFIGRTNEVWADIKV 180

Query: 199 FNAEGCSN 206
             A+GC++
Sbjct: 181 SGADGCNS 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456963|ref|XP_002281829.1| PREDICTED: heme-binding protein 2-like [Vitis vinifera]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 136/209 (65%), Gaps = 8/209 (3%)

Query: 3   LHLVPIVLPVCLVLSGFAIAMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTK 62
           L L+ I +  CL L      +ESP +AV+H+ESDFE+RLY E+ W +A V+  SF+ ST 
Sbjct: 29  LSLMLISILCCLALCK---GIESPEFAVIHAESDFEVRLYPESTWMTASVRDISFEKSTW 85

Query: 63  QGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTA--NGSVCYVKIYLTAK---SPPQPN 117
            GFHRL+QYI GANLN +R  +TAPVLTSI P     + S  +V+ YL  K   +PP P 
Sbjct: 86  NGFHRLFQYIQGANLNFSRIAMTAPVLTSIVPGAGPLHSSAYFVRFYLPVKFQATPPLPL 145

Query: 118 SELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIA 177
            EL+L+ +KW  HCIAVRKFSG+A+DDNI KE E L  SL+     N + +E   +Y+IA
Sbjct: 146 PELHLKPDKWAIHCIAVRKFSGYARDDNIVKEAEKLAISLSRSPWANFTTSESNYAYSIA 205

Query: 178 QYNSSRHQAGRLNEVWMNVPGFNAEGCSN 206
           QY+S     GR+NE+W++V     EGC +
Sbjct: 206 QYSSPFQIFGRVNEIWVDVKNSGLEGCES 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733745|emb|CBI14992.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 133/201 (66%), Gaps = 7/201 (3%)

Query: 13  CLVLSGFAI--AMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQ 70
           C +L   A+   +ESP +AV+H+ESDFE+RLY E+ W +A V+  SF+ ST  GFHRL+Q
Sbjct: 42  CPILCCLALCKGIESPEFAVIHAESDFEVRLYPESTWMTASVRDISFEKSTWNGFHRLFQ 101

Query: 71  YIHGANLNSARFPVTAPVLTSINPTTA--NGSVCYVKIYLTAK---SPPQPNSELNLEIE 125
           YI GANLN +R  +TAPVLTSI P     + S  +V+ YL  K   +PP P  EL+L+ +
Sbjct: 102 YIQGANLNFSRIAMTAPVLTSIVPGAGPLHSSAYFVRFYLPVKFQATPPLPLPELHLKPD 161

Query: 126 KWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ 185
           KW  HCIAVRKFSG+A+DDNI KE E L  SL+     N + +E   +Y+IAQY+S    
Sbjct: 162 KWAIHCIAVRKFSGYARDDNIVKEAEKLAISLSRSPWANFTTSESNYAYSIAQYSSPFQI 221

Query: 186 AGRLNEVWMNVPGFNAEGCSN 206
            GR+NE+W++V     EGC +
Sbjct: 222 FGRVNEIWVDVKNSGLEGCES 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.805	0.732	0.364	1.1e-25
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.810	0.780	0.331	3.2e-17
TAIR|locus:2032065	225	AT1G78450 "AT1G78450" [Arabido	0.791	0.742	0.280	2.3e-16
UNIPROTKB|E1BXL4	159	HEBP2 "Uncharacterized protein	0.720	0.955	0.322	4.2e-15
UNIPROTKB|F1S6A9	205	HEBP2 "Uncharacterized protein	0.720	0.741	0.319	8.8e-15
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.805	0.894	0.291	8.8e-15
RGD|1311553	203	Hebp2 "heme binding protein 2"	0.791	0.822	0.296	1.4e-14
UNIPROTKB|E1BFP1	205	HEBP2 "Uncharacterized protein	0.720	0.741	0.306	2.3e-14
MGI|MGI:1860084	205	Hebp2 "heme binding protein 2"	0.725	0.746	0.302	3e-14
UNIPROTKB|Q9Y5Z4	205	HEBP2 "Heme-binding protein 2"	0.720	0.741	0.300	3.8e-14

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 67/184 (36%), Positives = 100/184 (54%)

Query:    23 MESPHYAVVHSESDFEIRLYGEAFWASAL-VQRSSFQNSTKQGFHRLYQYIHGANLNSAR 81
             +E P Y +VHS + +EIR Y    W S   +   S  ++T+  F +L+ YI G N    +
Sbjct:    45 IECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDATRTAFFQLFAYIQGKNEYHQK 104

Query:    82 FPVTAPVLTSINPTTANGSVCY----VKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKF 137
               +TAPV++ ++P+  +G  C     V  Y+  K+ P P    NL I+KW S  +AVR+F
Sbjct:   105 IEMTAPVISQVSPS--DGPFCESSFTVSFYVPKKNQPDPAPSENLHIQKWNSRYVAVRQF 162

Query:   138 SGFAKDDNINKEVEALMNSLNLHFTGNT--SITED-----KLSYTIAQYNSSRHQAGRLN 190
             SGF  DD+I ++  AL +SL      N      ED       +YT+AQYNS    +GR+N
Sbjct:   163 SGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVAQYNSPFEFSGRVN 222

Query:   191 EVWM 194
             E+W+
Sbjct:   223 EIWL 226

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 60/181 (33%), Positives = 89/181 (49%)

Query:    24 ESPHYAVVHSESDFEIRLYGEAFWASAL-VQRSSFQNSTKQGFHRLYQYIHGANLNSARF 82
             E P Y +V +   FEIR+Y  A W S   +   S   +TK GF RL +YI G N ++ + 
Sbjct:    44 ECPTYKLVEAGYGFEIRMYDAALWISTSPIPSLSMTQATKTGFRRLNRYIEGDNKSNVKM 103

Query:    83 PVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAK 142
              +TAPV+    P     SV  V +YL  K+   P    +L +       +AVR+  G+  
Sbjct:   104 NMTAPVIAQATP---GRSVYTVSLYLPKKNQQNPPQADDLHVRSTKPTYVAVRQIGGYVS 160

Query:   143 DDNINKEVEALMNSL-NLHFTGNTSITEDKL-SYTIAQYNSSRHQAGR-LNEVWMNVPGF 199
             ++    E  ALM SL + ++      ++ KL +Y +A YN   H   R +NE+   VP F
Sbjct:   161 NNVAKDEAAALMESLRDSNWILPIEKSKGKLPAYFLAVYNPPSHTTARVINEIM--VP-F 217

Query:   200 N 200
             N
Sbjct:   218 N 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032065 AT1G78450 "AT1G78450" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 50/178 (28%), Positives = 84/178 (47%)

Query:    24 ESPHYAVVHSESDFEIRLYGEAFWASAL-VQRSSFQNSTKQGFHRLYQYIHGANLNSARF 82
             E P Y VVH+ + +EI  Y    W S   +Q  S   ++  G+++L  Y++G N    R 
Sbjct:    35 ECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRI 94

Query:    83 PVTAPVLTSINPTTANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAK 142
              +  P +T ++    N S   V  ++     P P    NL +++W S  +AV++ SG+  
Sbjct:    95 EIALPYITQVSQ---NLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVA 151

Query:   143 DDNINKEVEALMNSLN-------LHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVW 193
             D  I K+V  L  SL        +  +  T       +YT+AQ++     + R+NE+W
Sbjct:   152 DHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIW 209

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|E1BXL4 HEBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 51/158 (32%), Positives = 77/158 (48%)

Query:    36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPT 95
             D E+R Y  A W S +++  + + + +QGF +L+ YI G N    +  +T PV   +   
Sbjct:     4 DSELRQYETAKWVSTVIKGETQKEAMRQGFWKLFHYIQGKNEKEIKIDMTVPVTCLVKSG 63

Query:    96 TANGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMN 155
              A+  + +   +    SPPQP ++ ++ +E+  +  I VR FSGFA  D   +E EAL  
Sbjct:    64 CADFKISFFVPFEHQDSPPQP-TDSDVFVEERKAAAIFVRSFSGFASPDKYAEEAEALAK 122

Query:   156 SLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVW 193
              L           ED   YT A Y+S      R NEVW
Sbjct:   123 LLR---NRGQPFHED-FFYT-AGYDSPFKLFNRHNEVW 155

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1S6A9 HEBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 52/163 (31%), Positives = 84/163 (51%)

Query:    37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
             +EIR YG A W S  V+ + + ++ + GF RL  YI G N    +  +TAPV + + P +
Sbjct:    38 YEIRHYGPAKWVSTSVESTDWDSAIQTGFTRLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 97

Query:    97 A--NGSVCYVKIYLTAKS---PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
                + S   + +Y+ ++    PP+P +E N+ IE      + VR F GF+     N+E  
Sbjct:    98 GPFSESTITISLYIPSEQQSDPPRP-TESNVFIEDRAEMTVFVRSFDGFSSAQK-NQEQL 155

Query:   152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
               + S+ L   G   + ++K+ YT A Y+S      R NEVW+
Sbjct:   156 LTLASV-LREEGK--VFDEKVYYT-AGYSSPFELLDRNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 53/182 (29%), Positives = 85/182 (46%)

Query:    19 FAIAMESPHYAVVHSESD-FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANL 77
             F+  +++P Y    S+ D +E+R Y    W S +V       +   GF RL++YI G+N 
Sbjct:    10 FSTGLQNPKYTAQESKGDDYEVRTYQATNWVSTVVTGMEQDQAMSTGFRRLFKYIQGSNE 69

Query:    78 NSARFPVTAPVLTSINPTT--ANGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCI 132
               ++  +T PV   I+P    A  S   V  Y+  +    PP+P ++ ++ IE       
Sbjct:    70 KKSKVEMTTPVSCLIDPGAGPACESTFTVSFYIPEEHQADPPKP-TDPDVFIESRKELTA 128

Query:   133 AVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEV 192
              VR F GFA  ++  +E+  L+ SL         +   +  Y  A Y+S     GR NEV
Sbjct:   129 FVRTFGGFANSESCCEEILKLIESLK-----RDGMKFKEAPYYRAGYDSPFKLTGRRNEV 183

Query:   193 WM 194
             W+
Sbjct:   184 WL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1311553 Hebp2 "heme binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 54/182 (29%), Positives = 87/182 (47%)

Query:    22 AMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANL 77
             AME P +    +       +EIR YG A W S  V+   + ++ + GF +L  YI G N 
Sbjct:    17 AMEMPSWKAPENIDPQPGSYEIRHYGPAKWVSTCVESLDWDSAIQTGFTKLNGYIQGKNE 76

Query:    78 NSARFPVTAPVLTSINPTTA--NGSVCYVKIYLTAKS---PPQPNSELNLEIEKWTSHCI 132
                +  +TAPV++ + P +   + S   + +Y+ ++    PP+P SE ++ IE      +
Sbjct:    77 KEMKIKLTAPVMSFVEPGSGPFSESTITISLYIPSEQQHDPPRP-SESDVFIEDRGEMTV 135

Query:   133 AVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEV 192
              VR F GF+      K  E L+   N+       +  +K+ YT A Y+S      R NEV
Sbjct:   136 FVRSFDGFSSGQ---KNQEQLLTLANI-LREEGKVFNEKVFYT-AGYSSPFRLLDRNNEV 190

Query:   193 WM 194
             W+
Sbjct:   191 WL 192

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|E1BFP1 HEBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 50/163 (30%), Positives = 83/163 (50%)

Query:    37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
             +E+R YG A W S  V+   + ++ + GF RL  Y+ G N    +  +TAPV + + P +
Sbjct:    38 YEVRHYGPAKWVSTAVESMDWDSAMQTGFTRLKSYLQGKNEKEMKIKMTAPVTSYVEPGS 97

Query:    97 A--NGSVCYVKIYLTAKS---PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
                + S   + +Y+ ++    PP+P +E ++ IE      + VR F GF+     N+E  
Sbjct:    98 GPFSESTITISLYIPSEQQSDPPRP-AESDVFIEDRAEMTVFVRSFDGFSSAQK-NQEQL 155

Query:   152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
               + S+ L   G   + ++K+ YT A YNS      R NEVW+
Sbjct:   156 LTLASI-LREEGK--VFDEKVYYT-AGYNSPFKLLDRNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1860084 Hebp2 "heme binding protein 2" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 49/162 (30%), Positives = 79/162 (48%)

Query:    37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
             +EIR YG A W S  V+   + ++ + GF +L  YI G N    +  +TAPV + + P +
Sbjct:    38 YEIRHYGPAKWVSTCVESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGS 97

Query:    97 A--NGSVCYVKIYLTAKSPPQPN--SELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEA 152
             +  + S   + +Y+ ++  P P   SE ++ IE      + VR F GF+      K  E 
Sbjct:    98 SPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQ---KNQEQ 154

Query:   153 LMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
             L+   N+       +  +K+ YT A Y+S      R NEVW+
Sbjct:   155 LLTLANI-LREEGKVFNEKVFYT-AGYSSPFQLLDRNNEVWL 194

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y5Z4 HEBP2 "Heme-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 49/163 (30%), Positives = 82/163 (50%)

Query:    37 FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
             +EIR YG A W S  V+   + ++ + GF +L  YI G N    +  +TAPV + + P +
Sbjct:    38 YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 97

Query:    97 A--NGSVCYVKIYLTAKS---PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
                + S   + +Y+ ++    PP+P  E ++ IE      + VR F GF+   +  K  E
Sbjct:    98 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEMTVFVRSFDGFS---SAQKNQE 153

Query:   152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
              L+   ++    +  + ++K+ YT A YNS      R NEVW+
Sbjct:   154 QLLTLASI-LREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 194

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	7e-40

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  133 bits (338), Expect = 7e-40
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 15/178 (8%)

Query: 24  ESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFP 83
           E+P Y V+  E D+EIR Y    WA   V   S   ++ +GF RL  YI G N +  +  
Sbjct: 3   ETPPYTVLEREGDYEIRRYEPMVWAETEVDAGSRDEASGEGFRRLAGYIFGKNRSGEKIA 62

Query: 84  VTAPVLTSINPTTANGSV--CY-VKIYL----TAKSPPQPNSELNLEIEKWTSHCIAVRK 136
           +TAPVL    P TA+      + V   +     A++ P P    ++ I +  +  +AV +
Sbjct: 63  MTAPVLQQAIPMTADEEGSGAWTVSFVMPSGYQAETLPAPLDP-DVRIREVPARTVAVIR 121

Query: 137 FSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ-AGRLNEVW 193
           FSG A ++++ ++   L   L         +        +A YN        R NEVW
Sbjct: 122 FSGRASEEDVAEKAAELRAWL-----EADGLKPRG-EPFLAGYNPPWTPPFLRRNEVW 173

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	97.83
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	97.51
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	95.2
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	93.81
PRK10016	156	DNA gyrase inhibitor; Provisional	92.33
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	91.88
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	89.06

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=4.5e-55  Score=357.19  Aligned_cols=169  Identities=36%  Similarity=0.620  Sum_probs=135.4

Q ss_pred             CCCCCCeEEEeecCCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCC--CCC
Q 028252           22 AMESPHYAVVHSESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT--ANG   99 (211)
Q Consensus        22 ~~e~P~Y~vl~~~~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~--~~~   99 (211)
                      +.|||+|+||++.++||||+|++++||+|++.+++++.|..+||++|++||+|+|+++++|+||+||++++.+.+  +|+
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~   80 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCE   80 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTCE
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccC
Confidence            369999999999999999999999999999999999999999999999999999999999999999999985332  378


Q ss_pred             cEEEEEEEec---C-CCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEE
Q 028252          100 SVCYVKIYLT---A-KSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYT  175 (211)
Q Consensus       100 ~~~tvsF~lP---~-~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~  175 (211)
                      +.++|+|+||   | ++||+|+| ++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+.      +.+.++
T Consensus        81 ~~~t~~f~lP~~~~~~~~P~P~d-~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~------~~~~~~  153 (176)
T PF04832_consen   81 KEYTMSFFLPSEYQAENPPKPTD-PDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLK------DKGYYY  153 (176)
T ss_dssp             CEEEEEEE--HHHC-TS---BSS-TTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHH------CCCEEE
T ss_pred             CcEEEEEEcCcccccccCCCCCC-CeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCC------cCCCeE
Confidence            8999999999   6 99999996 89999999999999999999999999999999999999999843      678999


Q ss_pred             EEEeCCCCCC-CCcceeEEEEec
Q 028252          176 IAQYNSSRHQ-AGRLNEVWMNVP  197 (211)
Q Consensus       176 ~A~Yd~P~~~-~~R~NEVwi~~~  197 (211)
                      +|+||+||++ ++|||||||+++
T Consensus       154 ~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  154 VAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             EEESSSS-SSSSSSCEEEEEE--
T ss_pred             EEEcCCCCCCccCcceEEEEecC
Confidence            9999999776 999999999985

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=97.83  E-value=0.0031  Score=49.93  Aligned_cols=145  Identities=15%  Similarity=0.153  Sum_probs=94.9

Q ss_pred             CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCCCCc--EEEEEEEecCC
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTANGS--VCYVKIYLTAK  111 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~~~~--~~tvsF~lP~~  111 (211)
                      +++|+..++...+..... +++.+...++|.+|+.++..+|-.     .+ +.+.-.  .|.....+  .+-++.-+|.+
T Consensus         2 ~v~i~~~~~~~va~ir~~-g~~~~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~~   74 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLV-GPWEQTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPDD   74 (156)
T ss_pred             ceEEEEccCceEEEEEee-cCchhHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECCCCCCCChHHceeeEEEEeCCC
Confidence            478899999999998875 444445789999999999776632     12 223322  22111112  37789999933


Q ss_pred             C-CCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHH-HHHHHhcCCCCCCcccccCCcEEEEEeC-CCCCCCCc
Q 028252          112 S-PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEA-LMNSLNLHFTGNTSITEDKLSYTIAQYN-SSRHQAGR  188 (211)
Q Consensus       112 ~-pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~~~R  188 (211)
                      . .|...  ..+.+.++|+.++||..+.|.  -+.+.+.... +.+||..+|.+      ..+.+-+-.|. .|.....-
T Consensus        75 ~~~~~~~--~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~------~~~~p~~E~Y~~~~~~~~~~  144 (156)
T PRK10016         75 FVLPENS--EGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ------MAPKPCFEVYLNDGAEDGYW  144 (156)
T ss_pred             cccCCCC--CCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc------cCCCCCEEEeCCCCCCCCcE
Confidence            3 33222  368999999999999999995  4457776767 77899999854      23234444454 34333222


Q ss_pred             ceeEEEEec
Q 028252          189 LNEVWMNVP  197 (211)
Q Consensus       189 ~NEVwi~~~  197 (211)
                      .=|||++++
T Consensus       145 ~tei~iPI~  153 (156)
T PRK10016        145 DIEMYVPVQ  153 (156)
T ss_pred             EEEEEEEeE
Confidence            459999996

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=97.51  E-value=0.013  Score=44.31  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=96.9

Q ss_pred             CeEEEEECCceEEEEEeccCchhch--HHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccC--CCCCcEEEEEEEec-C
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNS--TKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPT--TANGSVCYVKIYLT-A  110 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A--~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~--~~~~~~~tvsF~lP-~  110 (211)
                      +++|+.-++...+..... .+..+.  ....+.+|..++.-.+...    ...|.+......  ......+.....++ .
T Consensus         2 ~~~i~~~p~~~v~~~~~~-~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   76 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRK-GPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEVD   76 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEE-EEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEEC
T ss_pred             CcEEEEECCEEEEEEEEE-ECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEEc
Confidence            578888899988888775 344433  6788999998887433211    344554443222  11344555556566 3


Q ss_pred             CCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHH-HHhcCCCCCCcccccCCcEEEEEeCCCCC-CCCc
Q 028252          111 KSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMN-SLNLHFTGNTSITEDKLSYTIAQYNSSRH-QAGR  188 (211)
Q Consensus       111 ~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~~~R  188 (211)
                      ...+.|   ..+....+|+..+++..|.|..  +.+.+....|.+ ||.++|+.     ...+..+-...+.|.. ...-
T Consensus        77 ~~~~~~---~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~-----~~~~~~~E~y~~~~~~~~~~~  146 (155)
T PF06445_consen   77 EDVPNP---DGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE-----RRDGPDFEIYLNDPDTDEEEY  146 (155)
T ss_dssp             TTCSGC---TTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE-----EESSEEEEEEESSTTTTSCGE
T ss_pred             ccccCC---ceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc-----cCCCCcEEEECCCCCCCCCce
Confidence            322333   3678889999999999999987  778899999999 99999852     1334444444455553 3455


Q ss_pred             ceeEEEEec
Q 028252          189 LNEVWMNVP  197 (211)
Q Consensus       189 ~NEVwi~~~  197 (211)
                      .=|||||++
T Consensus       147 ~~ei~iPik  155 (155)
T PF06445_consen  147 VTEIYIPIK  155 (155)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            669999985

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=95.20  E-value=1.3  Score=35.63  Aligned_cols=142  Identities=17%  Similarity=0.116  Sum_probs=89.5

Q ss_pred             CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCC--CCcEEEEEEEecCC
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTA--NGSVCYVKIYLTAK  111 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~--~~~~~tvsF~lP~~  111 (211)
                      +++|+..++..+|...-.+  ...-..++|.+|..+-.-++--.    -++.-+.-.  .|..-  .+=.+-.+-.+|  
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~--   73 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP----EQSETLGIYQDDPDTTPAEKCRYDACVVVP--   73 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC----CCceEEEEecCCCCCCCHHHceeeEEEEcC--
Confidence            7899999999999988765  44567889999999987665321    122222221  12110  222455666666  


Q ss_pred             CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHH-HHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcce
Q 028252          112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKE-VEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLN  190 (211)
Q Consensus       112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~-~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~N  190 (211)
                       .|.+.++..|..-++|+..+||.+|.|...  ++.+- ..-+.+||.+.|      +...+.+.+.+|=...- ..-..
T Consensus        74 -~~~~~n~~~v~~~~i~GG~YAV~r~~~~~d--~~~~aw~~if~ewlp~Sg------~~~~d~P~~e~y~n~~~-~~~~~  143 (154)
T COG3449          74 -EPIPENSEGVQLGEIPGGLYAVARFRGTAD--DLAKAWGYIFGEWLPASG------YEPRDRPILERYLNFPA-EDPEH  143 (154)
T ss_pred             -CccCCCCCceeEeeecCCceEEEEEeccHH--HHHHHHHHHHhhhccccC------cccCCCchHHHHhccCC-CCcce
Confidence             233333468999999999999999999652  34444 444566777776      44677788888844433 33444


Q ss_pred             eEEEE
Q 028252          191 EVWMN  195 (211)
Q Consensus       191 EVwi~  195 (211)
                      |+.+.
T Consensus       144 e~~vd  148 (154)
T COG3449         144 EIEVD  148 (154)
T ss_pred             eEEEE
Confidence            55443

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=93.81  E-value=2.1  Score=32.07  Aligned_cols=151  Identities=12%  Similarity=0.027  Sum_probs=81.4

Q ss_pred             EEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCCCCCcEEEEEEEec-CCCCC
Q 028252           38 EIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTTANGSVCYVKIYLT-AKSPP  114 (211)
Q Consensus        38 EiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~~~~~~~tvsF~lP-~~~pP  114 (211)
                      ++..-++...+..............+.|.+|+.++...+.......  .+++.-.  .+.....+.+.+.+-+| ... +
T Consensus         3 ~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~   79 (158)
T smart00871        3 RIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDTPEGEFRYDAGVEVSDE-V   79 (158)
T ss_pred             EEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCCChhHeEEEEEEEeCCC-C
Confidence            4444455555554443221112356788889888776553322221  2322222  12111123455555555 222 2


Q ss_pred             CCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC--CCCcceeE
Q 028252          115 QPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH--QAGRLNEV  192 (211)
Q Consensus       115 ~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~--~~~R~NEV  192 (211)
                      ...  ..+.+..+|+..+++.+|.|- ..+.+.+...+|..++..+|...   ....+..+--.++.|..  +....=|+
T Consensus        80 ~~~--~~~~~~~~p~~~y~~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~E~y~~~~~~~~~~~~~~ei  153 (158)
T smart00871       80 ENP--EGVETKEIPAGKYAVFTHKGG-SYDEIQETWEAIYGEWLPNSGYE---LRDAGPDFEIYLNDPADTDPEELVTEI  153 (158)
T ss_pred             CCC--CCceEEEECCCcEEEEEEcCC-CHHHHHHHHHHHHHhhcccCCCc---cCcCCceEEEEeCCCCCCChhHeEEEE
Confidence            221  357888999999999999993 46678899999999988776320   10112222233444432  13446788


Q ss_pred             EEEec
Q 028252          193 WMNVP  197 (211)
Q Consensus       193 wi~~~  197 (211)
                      +|+++
T Consensus       154 ~ipv~  158 (158)
T smart00871      154 YIPIK  158 (158)
T ss_pred             EEEcC
Confidence            98874

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=92.33  E-value=1  Score=35.31  Aligned_cols=69  Identities=19%  Similarity=0.124  Sum_probs=51.1

Q ss_pred             CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCC--CCCCCcce--eEEEEe
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSS--RHQAGRLN--EVWMNV  196 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P--~~~~~R~N--EVwi~~  196 (211)
                      +|+|+++|++.++..+..|...+ .+.+...+|.+++.++|+.      .. ......||.|  .....-|=  ||-++.
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~------~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~   73 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV------PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPD   73 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC------CC-cEEEEECCCCCCCChHHceeeEEEEeCC
Confidence            58999999999999999997643 4778889999999999854      22 3677889999  44433233  444544


Q ss_pred             c
Q 028252          197 P  197 (211)
Q Consensus       197 ~  197 (211)
                      .
T Consensus        74 ~   74 (156)
T PRK10016         74 D   74 (156)
T ss_pred             C
Confidence            4

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=91.88  E-value=0.79  Score=36.85  Aligned_cols=57  Identities=11%  Similarity=0.026  Sum_probs=47.8

Q ss_pred             CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH  184 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~  184 (211)
                      +|.|.+.|+..||..+-.|  ......+-.++|.+|.+++|+-+     ..+...-..||+|-+
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p-----~~S~~~gI~~ddP~~   58 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP-----EQSETLGIYQDDPDT   58 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC-----CCceEEEEecCCCCC
Confidence            6899999999999999999  78889999999999999999641     235566677888875

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=89.06  E-value=1.6  Score=32.59  Aligned_cols=69  Identities=16%  Similarity=0.049  Sum_probs=52.6

Q ss_pred             CeEEEeeCCeEEEEEEecCcCChhH-HHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcceeEEE
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKDDN-INKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM  194 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi  194 (211)
                      +|+|+++|+++++..+..|...+.. +.+..++|.+++...++.    . ....++...||.|..........++
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~----~-~~~~~~~i~~~~~~~~~~~~~~~~~   71 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS----T-DPGPIIGIYYDNPNITDDEEFRYDI   71 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC----C-SSSSEEEEEEECCTSSTGCEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc----c-CCCcceeEEeccccccCCcceEEEE
Confidence            5899999999999999999887777 899999999999988643    1 4556667788887543444444443

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		7e-13
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		7e-13
4ayz_B	208	X-Ray Structure Of Human Soul Length = 208		1e-11
4ayz_A	208	X-Ray Structure Of Human Soul Length = 208		2e-11
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		6e-05
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		8e-05
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		8e-05

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           +EIR YG A W S  V+   + ++ + GF +L  YI G N    +  +TAPV + + P +
Sbjct: 41  YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 100
Query: 97  A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
              + S   + +Y+ ++    PP+P  E ++ IE      + VR F GF+   +  K  E
Sbjct: 101 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEMTVFVRSFDGFS---SAQKNQE 156
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
            L+ +L      +  + ++K+ YT A YNS      R NEVW+
Sbjct: 157 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           +EIR YG A W S  V+   + ++ + GF +L  YI G N    +  +TAPV + + P +
Sbjct: 60  YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGS 119
Query: 97  A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
              + S   + +Y+ ++    PP+P  E ++ IE      + VR F GF+   +  K  E
Sbjct: 120 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEMTVFVRSFDGFS---SAQKNQE 175
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
            L+ +L      +  + ++K+ YT A YNS      R NEVW+
Sbjct: 176 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 216

>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           +EIR YG A W S  V+   + ++ + GF +L  YI G N    +   TAPV + + P +
Sbjct: 41  YEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPGS 100
Query: 97  A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
                S   + +Y+ ++    PP+P  E ++ IE      + VR F GF+   +  K  E
Sbjct: 101 GPFESSTITISLYIPSEQQFDPPRP-LESDVFIEDRAEXTVFVRSFDGFS---SAQKNQE 156
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
            L+ +L      +  + ++K+ YT A YNS      R NEVW+
Sbjct: 157 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197

>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 37  FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT 96
           +EIR YG A W S  V+   + ++ + GF +L  YI G N    +   TAPV + + P +
Sbjct: 41  YEIRHYGPAKWVSTSVESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPGS 100
Query: 97  A--NGSVCYVKIYLTAK---SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVE 151
              + S   + +Y+ ++    PP+P  E ++ IE      + VR F GF+   +  K  E
Sbjct: 101 GPFSESTITISLYIPSEQQFDPPRP-LESDVFIEDRAEXTVFVRSFDGFS---SAQKNQE 156
Query: 152 ALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
            L+ +L      +  + ++K+ YT A YNS      R NEVW+
Sbjct: 157 QLL-TLASILREDGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 48  ASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIY 107
           A+  V       + ++   ++ +Y+ G N       +T PV  ++ P         +K++
Sbjct: 44  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 103
Query: 108 LTAK-----SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162
                    SPP P+ E +++IE+     +   +F G+AK+ +       L  +L     
Sbjct: 104 FRIPNQFQGSPPAPSDE-SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE---- 158
Query: 163 GNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
             T  T     Y  A Y+      GR NEVW+
Sbjct: 159 -GTPATYQGDVYYCAGYDPPMKPYGRRNEVWL 189

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 48  ASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIY 107
           A+  V       + ++   ++ +Y+ G N       +T PV  ++ P         +K++
Sbjct: 47  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 108 LTAK-----SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162
                    SPP P+ E +++IE+     +   +F G+AK+ +       L  +L     
Sbjct: 107 FRIPNQFQGSPPAPSDE-SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE---- 161
Query: 163 GNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
             T  T     Y  A Y+      GR NEVW+
Sbjct: 162 -GTPATYQGDVYYCAGYDPPMKPYGRRNEVWL 192

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 48  ASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIY 107
           A+  V       + ++   ++ +Y+ G N       +T PV  ++ P         +K++
Sbjct: 47  ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 108 LTAK-----SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFT 162
                    SPP P+ E +++IE+     +   +F G+AK+ +       L  +L     
Sbjct: 107 FRIPNQFQGSPPAPSDE-SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE---- 161
Query: 163 GNTSITEDKLSYTIAQYNSSRHQAGRLNEVWM 194
             T  T     Y  A Y+      GR NEVW+
Sbjct: 162 -GTPATYQGDVYYCAGYDPPMKPYGRRNEVWL 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	1e-28
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	3e-28
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	6e-26

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  105 bits (262), Expect = 1e-28
 Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 15/187 (8%)

Query: 17  SGFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYI 72
           +    ++E+  + V+ +    +  +E R      +A+  V       + ++   ++ +Y+
Sbjct: 12  NSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYV 71

Query: 73  HGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYL-----TAKSPPQPNSELNLEIEKW 127
            G N       +T PV  ++ P         +K++         SPP P+ E +++IE+ 
Sbjct: 72  GGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-SVKIEER 130

Query: 128 TSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAG 187
               +   +F G+AK+ +       L  +L       T  T     Y  A Y+      G
Sbjct: 131 EGITVYSTQFGGYAKEADYVAHATQLRTTLE-----GTPATYQGDVYYCAGYDPPMKPYG 185

Query: 188 RLNEVWM 194
           R NEVW+
Sbjct: 186 RRNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  104 bits (261), Expect = 3e-28
 Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 15/190 (7%)

Query: 14  LVLSGFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLY 69
                 A A+E+P +            +EIR YG A W S  V+   + ++ + GF +L 
Sbjct: 14  AAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLN 73

Query: 70  QYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYL-----TAKSPPQPNSELNLEI 124
            YI G N    +  +TAPV + + P +   S   + I L         PP+P    ++ I
Sbjct: 74  SYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLES-DVFI 132

Query: 125 EKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH 184
           E      + VR F GF+      +++  L + L            D+  Y  A YNS   
Sbjct: 133 EDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED-----GKVFDEKVYYTAGYNSPVK 187

Query: 185 QAGRLNEVWM 194
              R NEVW+
Sbjct: 188 LLNRNNEVWL 197

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score = 99.2 bits (246), Expect = 6e-26
 Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 15/190 (7%)

Query: 14  LVLSGFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLY 69
                 A A+E+P +            +EIR YG A W S  V+   + ++ + GF +L 
Sbjct: 33  AAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLN 92

Query: 70  QYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYL-----TAKSPPQPNSELNLEI 124
            YI G N    +  +TAPV + + P +   S   + I L         PP+P    ++ I
Sbjct: 93  SYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLES-DVFI 151

Query: 125 EKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH 184
           E      + VR F GF+      +++  L + L            D+  Y  A YNS   
Sbjct: 152 EDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED-----GKVFDEKVYYTAGYNSPVK 206

Query: 185 QAGRLNEVWM 194
              R NEVW+
Sbjct: 207 LLNRNNEVWL 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.6
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.52
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	97.26
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	96.85
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	95.44
3lur_A	158	Putative bacterial transcription regulation prote;	94.94
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	91.87
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	86.2

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=6.3e-57  Score=372.93  Aligned_cols=174  Identities=20%  Similarity=0.312  Sum_probs=163.0

Q ss_pred             cCCCCCCCCCeEEEeecCC----eEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec
Q 028252           18 GFAIAMESPHYAVVHSESD----FEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN   93 (211)
Q Consensus        18 ~~c~~~e~P~Y~vl~~~~~----yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~   93 (211)
                      +.|.+.|||+|+||++.++    ||||+|+++.||+|+++++++++|..+||++|++||+|+|.++++|+||+||++++.
T Consensus        13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~   92 (195)
T 2gov_A           13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVF   92 (195)
T ss_dssp             CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEE
T ss_pred             cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEc
Confidence            5688999999999999877    999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCC--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCccc
Q 028252           94 PTTA--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSIT  168 (211)
Q Consensus        94 p~~~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~  168 (211)
                      |+++  |++.++|+|+||   |++||+|+| ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+.    +
T Consensus        93 p~~~~~~~~~~tvsF~lP~~~~~~pP~P~d-~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----~  167 (195)
T 2gov_A           93 PNEDGSLQKKLKVWFRIPNQFQGSPPAPSD-ESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT----Y  167 (195)
T ss_dssp             ECTTSCEEEEEEEEECCCHHHHHSCCCBCS-SSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC----E
T ss_pred             CCCCCCcCceEEEEEEcchhcccCCCCCCC-CceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCc----c
Confidence            7654  677899999999   789999996 89999999999999999999999999999999999999999865    4


Q ss_pred             ccCCcEEEEEeCCCCCCCCcceeEEEEec
Q 028252          169 EDKLSYTIAQYNSSRHQAGRLNEVWMNVP  197 (211)
Q Consensus       169 ~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~  197 (211)
                       ..+.|++|+||+||+++.|||||||+.+
T Consensus       168 -~~~~~~~a~Yn~P~~~~~RrNEV~i~~~  195 (195)
T 2gov_A          168 -QGDVYYCAGYDPPMKPYGRRNEVWLVKA  195 (195)
T ss_dssp             -EEEEEEEEESSCCSSSSCCEEEEEEEEC
T ss_pred             -cCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence             5677899999999999999999999863

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.4e-56  Score=377.99  Aligned_cols=175  Identities=29%  Similarity=0.482  Sum_probs=156.8

Q ss_pred             cCCCCCCCCCeEEEee----cCCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec
Q 028252           18 GFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN   93 (211)
Q Consensus        18 ~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~   93 (211)
                      +.|.+.|||+|+||++    .++||||+|++++||+|++++.++++|...||++|++||+|+|.++++|+||+||++++.
T Consensus        37 ~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~  116 (227)
T 4b0y_A           37 AAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE  116 (227)
T ss_dssp             ----CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEEEEEE
T ss_pred             cccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence            6678899999999999    799999999999999999998999999999999999999999999999999999999998


Q ss_pred             cCCC--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCccc
Q 028252           94 PTTA--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSIT  168 (211)
Q Consensus        94 p~~~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~  168 (211)
                      |+++  |++.++|+|+||   |++||+|+| ++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+.    +
T Consensus       117 p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D-~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~----~  191 (227)
T 4b0y_A          117 PGSGPFSESTITISLYIPSEQQFDPPRPLE-SDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV----F  191 (227)
T ss_dssp             CCC--CCCEEEEEEEECCGGGSSSCCCBSS-SSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCC----B
T ss_pred             cCCCcccCceEEEEEEcChhhccCCCCCCC-CceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCc----c
Confidence            8764  678999999999   899999996 89999999999999999999999999999999999999999965    4


Q ss_pred             ccCCcEEEEEeCCCCCCCCcceeEEEEecC
Q 028252          169 EDKLSYTIAQYNSSRHQAGRLNEVWMNVPG  198 (211)
Q Consensus       169 ~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~  198 (211)
                       ..+.|++|+||+||++++|||||||.+++
T Consensus       192 -~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~  220 (227)
T 4b0y_A          192 -DEKVYYTAGYNSPVKLLNRNNEVWLIQKN  220 (227)
T ss_dssp             -CSSCEEEEECC---CCCSSCEEEEEEBC-
T ss_pred             -CCCcEEEEEeCCCCCcCCceeEEEEEECC
Confidence             56778999999999999999999999886

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=2.4e-56  Score=373.45  Aligned_cols=175  Identities=29%  Similarity=0.482  Sum_probs=162.5

Q ss_pred             cCCCCCCCCCeEEEee----cCCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec
Q 028252           18 GFAIAMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN   93 (211)
Q Consensus        18 ~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~   93 (211)
                      +-+.+.|||+|+||++    .++||||+|++++||+|++++.++++|...||++|++||+|+|.++++|+||+||++++.
T Consensus        18 ~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~   97 (212)
T 3r8j_A           18 AAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE   97 (212)
T ss_dssp             ----CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred             hhcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence            3456789999999999    789999999999999999998999999999999999999999999999999999999998


Q ss_pred             cCCC--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCccc
Q 028252           94 PTTA--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSIT  168 (211)
Q Consensus        94 p~~~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~  168 (211)
                      ++++  |++.++|+|+||   |++||+|+| ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+.    +
T Consensus        98 p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d-~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----~  172 (212)
T 3r8j_A           98 PGSGPFSESTITISLYIPSEQQFDPPRPLE-SDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV----F  172 (212)
T ss_dssp             CTTSTTSCEEEEEEEECCHHHHSSCCCBSS-TTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCC----B
T ss_pred             cCCCcccCceEEEEEEcChHHccCCCCCCC-CceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCc----c
Confidence            7764  678999999999   899999996 89999999999999999999999999999999999999999965    4


Q ss_pred             ccCCcEEEEEeCCCCCCCCcceeEEEEecC
Q 028252          169 EDKLSYTIAQYNSSRHQAGRLNEVWMNVPG  198 (211)
Q Consensus       169 ~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~  198 (211)
                       ..+.|++|+||+||++++|||||||.+++
T Consensus       173 -~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~  201 (212)
T 3r8j_A          173 -DEKVYYTAGYNSPVKLLNRNNEVWLIQKN  201 (212)
T ss_dssp             -CSSCEEEEESSSSSCCSSSCEEEEEEBCC
T ss_pred             -CCCcEEEEEeCCCCCcCCceeEEEEEeCC
Confidence             56778999999999999999999999986

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.60  E-value=2.2e-06  Score=64.24  Aligned_cols=146  Identities=14%  Similarity=0.118  Sum_probs=96.6

Q ss_pred             CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEec--cCCC--CCcEEEEEEEecCC
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSIN--PTTA--NGSVCYVKIYLTAK  111 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~--p~~~--~~~~~tvsF~lP~~  111 (211)
                      +++|+..++...+..... .++++....+|.+|++++...|-..      .+.+.-..  +...  ..-.+.+++.+|..
T Consensus         2 ~~~i~~~~~~~v~~~~~~-g~~~~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~~~~~~~~~~~~~~~~~~~v~~~   74 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLV-GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAVYYDNPDETPAEKLRCDTVVTVPGY   74 (157)
T ss_dssp             CCEEEEECCEEEEEEEEE-SCHHHHHHHHHHHHHHHHHHTTCCC------SEEEEEECSCTTTSCGGGCEEEEEEEECTT
T ss_pred             CCEEEEeCCeEEEEEEEE-CCchhhHHHHHHHHHHHHHHcCCCC------CcEEEEECCCCCCCCHHHheEEEEEEecCc
Confidence            478999999999987764 3444456789999999997765332      14433211  2110  22356666666622


Q ss_pred             CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEeC-CCCCCCCcc
Q 028252          112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQYN-SSRHQAGRL  189 (211)
Q Consensus       112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~~~R~  189 (211)
                      ..+.|.+ ..+.+.++|+.+++|..|.|...  .+.+...+|. +||.++|+.      ..+.+.+-.|. .|..+....
T Consensus        75 ~~~~~~~-~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~------~~~~~~~E~Y~~~~~~~~~~~  145 (157)
T 1jyh_A           75 FTLPENS-EGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE------MLPKPCFEVYLNNGAEDGYWD  145 (157)
T ss_dssp             CCCCSSC-TTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE------ECSSCEEEEECSCHHHHSSEE
T ss_pred             cccCCCC-CCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc------cCCCceEEEecCCCCCcccEE
Confidence            2211332 47899999999999999999863  4667778885 999998843      34445667773 222335566


Q ss_pred             eeEEEEec
Q 028252          190 NEVWMNVP  197 (211)
Q Consensus       190 NEVwi~~~  197 (211)
                      .||||+++
T Consensus       146 tei~ipi~  153 (157)
T 1jyh_A          146 IEMYVAVQ  153 (157)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            79999997

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.52  E-value=1.1e-05  Score=62.09  Aligned_cols=144  Identities=11%  Similarity=0.008  Sum_probs=99.6

Q ss_pred             CeEEEEECCceEEEEEeccCchh---chHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCCCCCcEEEEEEEec-CC
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQ---NSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYVKIYLT-AK  111 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~---~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~~~~~~~tvsF~lP-~~  111 (211)
                      +++|+..++...|....... +.   +...++|.+|.+++..+|-     ..+.|.+......+  .+.+.+.+-+| .+
T Consensus         8 ~v~I~~~p~~~va~ir~~~~-~~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~--~~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTT-MSELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMS--AGTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEEC-HHHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCT--TSCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecC-HHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCC--CcceEEEEEEEeCC
Confidence            67899999999999876533 32   2334789999999886653     23444444332222  34566666667 32


Q ss_pred             CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCC-C-CCcc
Q 028252          112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRH-Q-AGRL  189 (211)
Q Consensus       112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~-~~R~  189 (211)
                      ..+ +.  ..|.+.++|+.++++.++.|...+  +.+..++|.+||.++|+.      ..+..+-..+|.|.. . ...+
T Consensus        80 ~~~-~~--~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~------~~~~~~E~Y~~~p~~~~~~~~~  148 (158)
T 3e0h_A           80 GVE-GS--GRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD------LSGEAYEIYLDNPAETAPDQLR  148 (158)
T ss_dssp             CCC-CB--TTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC------EEEEEEEEECSCTTSSCGGGCE
T ss_pred             CCC-CC--CceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC------cCCCEEEEEeCCCCCCCHHHhE
Confidence            222 22  379999999999999999997654  888889999999999854      234443344577775 2 6678


Q ss_pred             eeEEEEecC
Q 028252          190 NEVWMNVPG  198 (211)
Q Consensus       190 NEVwi~~~~  198 (211)
                      .||||+++.
T Consensus       149 tei~ipv~~  157 (158)
T 3e0h_A          149 TRVSLMLHE  157 (158)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEcC
Confidence            999999974

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=97.26  E-value=0.0068  Score=50.73  Aligned_cols=149  Identities=7%  Similarity=-0.055  Sum_probs=92.2

Q ss_pred             cCCeEEEEECCceEEEEEeccCchhchH-HHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCCCCCcEEEE--EEEec-
Q 028252           34 ESDFEIRLYGEAFWASALVQRSSFQNST-KQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTTANGSVCYV--KIYLT-  109 (211)
Q Consensus        34 ~~~yEiR~Y~~~~wv~t~~~~~~~~~A~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~~~~~~~tv--sF~lP-  109 (211)
                      ..+++|+..++...+.......+. +.. ...|.+|.+++...+     +..+.|+.......+-....+..  .+++| 
T Consensus       121 ~~~v~I~~~p~~~v~~~~~~~~~~-~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~v  194 (278)
T 1r8e_A          121 LGEVFVLDEEEIRIIQTEAEGIGP-ENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQPYTSIDEMTYRHIFTPV  194 (278)
T ss_dssp             TTCCEEEEECCEEEEEEECTTCCT-TTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCCCSCGGGCCCSEEEEEC
T ss_pred             CCceEEEEcCCeEEEEeecCCCCh-HhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHHhhcCCCcceeEEEEEe
Confidence            346889999999888876522222 223 567888999886654     23345664433211101112222  34566 


Q ss_pred             CCCC-CCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCC---
Q 028252          110 AKSP-PQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ---  185 (211)
Q Consensus       110 ~~~p-P~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~---  185 (211)
                      .+.. |.|.+ ..|.+..+|+..+++..+.|..  +.+.+....|.+||.++|+.      ..+..+--..+.|+..   
T Consensus       195 ~~~~~~l~~~-~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~------~~g~~~E~y~~~~~~~~~~  265 (278)
T 1r8e_A          195 LTNKQISSIT-PDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT------VVSDVYELIIPIHYSPKKQ  265 (278)
T ss_dssp             CCCSCCSSCC-TTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC------EEEEEEEEEEESCCCSSSC
T ss_pred             cCcccccccc-CCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc------cCCCeEEEEeecccccCCh
Confidence            2222 12222 4688999999999999999965  45677888899999999854      3343433444456542   


Q ss_pred             CCcceeEEEEec
Q 028252          186 AGRLNEVWMNVP  197 (211)
Q Consensus       186 ~~R~NEVwi~~~  197 (211)
                      ..-.-|||||++
T Consensus       266 ~~~~teI~iPv~  277 (278)
T 1r8e_A          266 EEYRVEMKIRIA  277 (278)
T ss_dssp             CCEEEEEEEEEC
T ss_pred             hheEEEEEEEec
Confidence            244679999986

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=96.85  E-value=0.093  Score=42.23  Aligned_cols=155  Identities=8%  Similarity=-0.013  Sum_probs=94.9

Q ss_pred             CCeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhh------hcCCCCCCC-CCCcc-ceEEEec---cCC---CCCc
Q 028252           35 SDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYI------HGANLNSAR-FPVTA-PVLTSIN---PTT---ANGS  100 (211)
Q Consensus        35 ~~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI------~G~N~~~~k-i~MT~-PV~~~i~---p~~---~~~~  100 (211)
                      .+.+|+.-++...+.....+...+++..++|.+|+..+      ..++-.... -..+. |...-..   +..   ..+-
T Consensus        23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~~~~~~~~  102 (211)
T 3b49_A           23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAW  102 (211)
T ss_dssp             SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCCTTCGGGE
T ss_pred             CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccccCchhhe
Confidence            36888999999998887764433336678999999987      433321111 11222 3332221   111   0223


Q ss_pred             EEEEEEEec-CCC--------------CCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCC
Q 028252          101 VCYVKIYLT-AKS--------------PPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNT  165 (211)
Q Consensus       101 ~~tvsF~lP-~~~--------------pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~  165 (211)
                      .|.+++-+| .-+              .|.+.. ..|.+.++|+..+++.++.|...  .+.+...+|.+||.++|+.  
T Consensus       103 ~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~-~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~--  177 (211)
T 3b49_A          103 LWTSILRQPDFVTEEVLEWAKEVARKKKPDVDT-SRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLR--  177 (211)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCC-TTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCC--
T ss_pred             EEEEEEEcCCcccHHHHHHHHHHHhccCCCCCc-ccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCc--
Confidence            556666667 211              122222 47999999999999999999875  4677888899999999852  


Q ss_pred             cccccC--CcEEEEEe-CCCCCC--CCcceeEEEEec
Q 028252          166 SITEDK--LSYTIAQY-NSSRHQ--AGRLNEVWMNVP  197 (211)
Q Consensus       166 ~~~~~~--~~~~~A~Y-d~P~~~--~~R~NEVwi~~~  197 (211)
                         ...  +.+.+-.| +.|...  ..-+=||+++++
T Consensus       178 ---~~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          178 ---NDTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             ---BCBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             ---cccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence               122  13344444 667642  333678999874

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=95.44  E-value=0.54  Score=38.86  Aligned_cols=148  Identities=6%  Similarity=0.028  Sum_probs=83.1

Q ss_pred             CeEEEEECCceEEEEEeccCchhchHH----HHHHHHHhhhhcCCCCCCCCCCccceEEEe--ccCC--CCCcEEEEEEE
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNSTK----QGFHRLYQYIHGANLNSARFPVTAPVLTSI--NPTT--ANGSVCYVKIY  107 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~----~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i--~p~~--~~~~~~tvsF~  107 (211)
                      +++|..-++...+..........+...    .....|.+-+.+.+...     ..+++.-.  .|..  ..+..+.+..-
T Consensus       125 ~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~~~~~~-----~~~~~gi~~d~~~~~~~~~~~~~~~~~  199 (292)
T 1d5y_A          125 EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI-----PPVLYGLNETRPSQDKDDEQEVFYTTA  199 (292)
T ss_dssp             CEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSC-----CSCEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             CceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhcccCCC-----CCCEEEEEecCCCcCcccceeEEEEEE
Confidence            688889999888887664321111111    22333444444333211     12333221  1321  12345666666


Q ss_pred             ecCCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEeC---C-C
Q 028252          108 LTAKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQYN---S-S  182 (211)
Q Consensus       108 lP~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd---~-P  182 (211)
                      +|.+..+.+.  ..+...++|+.+++|.++.|.  .+.+.+-...|. +||.++|+.      ..+.+.+-.|.   . |
T Consensus       200 v~v~~~~~~~--~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~------~~~~p~~E~Y~~~~~~~  269 (292)
T 1d5y_A          200 LAQDQADGYV--LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT------RRKGQDIERYYPAEDAK  269 (292)
T ss_dssp             EEHHHHGGGC--TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE------ECSSCEEEEECGGGC--
T ss_pred             EeccccccCC--CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc------cCCCCcEEEEeeccccC
Confidence            6611111111  258888999999999999994  566888888886 999998843      23444556675   3 3


Q ss_pred             CCC--CCcceeEEEEecC
Q 028252          183 RHQ--AGRLNEVWMNVPG  198 (211)
Q Consensus       183 ~~~--~~R~NEVwi~~~~  198 (211)
                      ...  ..-.-||||||+.
T Consensus       270 ~~~~~~~~~tEI~iPI~~  287 (292)
T 1d5y_A          270 AGDRPINLRCELLIPIRR  287 (292)
T ss_dssp             --CCSCEEEEEEEEEEEC
T ss_pred             CCCCCCceEEEEEEEeeh
Confidence            222  1224599999974

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=94.94  E-value=0.22  Score=37.85  Aligned_cols=71  Identities=15%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEeCCCCCC-CCcceeEEEEecC
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ-AGRLNEVWMNVPG  198 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVwi~~~~  198 (211)
                      .+...++|+.++||-++.|...+ .+.+--+.+. +||-+.|+.      ..+.+-+-.|+..-.. ..-.-||||++++
T Consensus        86 ~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~------~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~  158 (158)
T 3lur_A           86 KYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT------VKSAPFFELYQDGDTTSEKYITEIWMPVKG  158 (158)
T ss_dssp             GSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT------BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred             CcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe------eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence            57788999999999999997543 4556666655 589888844      4455677788764322 4456799999975

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=91.87  E-value=1.3  Score=34.35  Aligned_cols=141  Identities=9%  Similarity=-0.018  Sum_probs=78.9

Q ss_pred             CeEEEEECCceEEEEEeccCc------hhchHHHHHHHHHhh-hhcCCCCCCCCCCccceEEEeccCCC-CCcEEEEEEE
Q 028252           36 DFEIRLYGEAFWASALVQRSS------FQNSTKQGFHRLYQY-IHGANLNSARFPVTAPVLTSINPTTA-NGSVCYVKIY  107 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~------~~~A~~~gF~~L~~Y-I~G~N~~~~ki~MT~PV~~~i~p~~~-~~~~~tvsF~  107 (211)
                      +|+|..-++.+.|-.......      ..+...+.+.+|+.. |.+..      . ...++.-....+. ....++...-
T Consensus        21 ~~~I~~~~~f~vvGi~~r~~~~~e~~~~~~~I~~lW~~~~~~~i~~~~------~-~~~~~gv~~~~~~~~~~~~~y~ig   93 (170)
T 3gk6_A           21 GMNISEINGFEVTGFVVRTTNADEMNPMTAKIGNLWEKFYLNAAPKLT------D-KSKVYGLYTNYESDFTGAFDVIAC   93 (170)
T ss_dssp             EEEEEEECCEEEEEEEEEECHHHHHSTTTCCHHHHHHHHHHHTGGGCC------T-TCCEEEEEECCSSSTTSCEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEEcCcccCccchhHHHHHHHHHHHhhhhhhc------C-CCcEEEEEeecccCCCCcEEEEEE
Confidence            688888899888887654221      122345566666543 11110      0 1223322211110 2233333222


Q ss_pred             ec-CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCC
Q 028252          108 LT-AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQA  186 (211)
Q Consensus       108 lP-~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~  186 (211)
                      +. .+... |   ..+...++|+.++||-++.|... +.+.+--+.+..||-..|..    +.....+-+-.|+...   
T Consensus        94 v~v~~~~~-p---~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~----y~~~~~pdfE~Y~~~~---  161 (170)
T 3gk6_A           94 SDTLSPQL-L---SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCP----HKRAYTTDFEYYKSAN---  161 (170)
T ss_dssp             ESSCCTTT-S---TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CC----CCBCCSEEEEECCSSS---
T ss_pred             EEecCCCC-C---CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCc----ceecCcCCEEEECCCC---
Confidence            33 21111 3   25788899999999999999553 46777777887799888711    2245567777886542   


Q ss_pred             CcceeEEEEec
Q 028252          187 GRLNEVWMNVP  197 (211)
Q Consensus       187 ~R~NEVwi~~~  197 (211)
                        .-||||+|+
T Consensus       162 --~~eI~IpI~  170 (170)
T 3gk6_A          162 --TVEISIAVR  170 (170)
T ss_dssp             --EEEEEEEBC
T ss_pred             --eEEEEEEEC
Confidence              679999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=86.20  E-value=4.3  Score=30.07  Aligned_cols=70  Identities=7%  Similarity=-0.064  Sum_probs=47.4

Q ss_pred             CeEEEeeCCeEEEEEEecCcCCh--hHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCCCCcceeEEEEecC
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKD--DNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEVWMNVPG  198 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~~  198 (211)
                      +|+|+++|+..++..+..|...+  ..+.+.-.+|.+++..+|+.      ..+..+...||  +....=+=|+.+++.+
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~------~~g~~~~iy~d--~~~~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS------PSGPPFARYFG--MSAGTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC------CSSCCEEEEES--CTTSCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCeEEEEec--CCCcceEEEEEEEeCC
Confidence            68999999999999999997532  23445667788999888854      23444434444  2223445678888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	2e-32

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 2e-32
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 15/182 (8%)

Query: 22  AMESPHYAVVHS----ESDFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANL 77
           ++E+  + V+ +    +  +E R      +A+  V       + ++   ++ +Y+ G N 
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTND 65

Query: 78  NSARFPVTAPVLTSINPTTA-----NGSVCYVKIYLTAKSPPQPNSELNLEIEKWTSHCI 132
                 +T PV  ++ P           V +        SPP P+ E +++IE+     +
Sbjct: 66  KGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-SVKIEEREGITV 124

Query: 133 AVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQAGRLNEV 192
              +F G+AK+ +       L  +L       T  T     Y  A Y+      GR NEV
Sbjct: 125 YSTQFGGYAKEADYVAHATQLRTTLE-----GTPATYQGDVYYCAGYDPPMKPYGRRNEV 179

Query: 193 WM 194
           W+
Sbjct: 180 WL 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	98.31
d1r8ea2	157	Multidrug-binding domain of transcription activato	97.68
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	85.22
d1d5ya3	173	Rob transcription factor, C-terminal domain {Esche	82.41

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-55  Score=359.70  Aligned_cols=170  Identities=21%  Similarity=0.319  Sum_probs=158.5

Q ss_pred             CCCCCCCeEEEeecC----CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCC
Q 028252           21 IAMESPHYAVVHSES----DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT   96 (211)
Q Consensus        21 ~~~e~P~Y~vl~~~~----~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~   96 (211)
                      .++|||+|+||++.+    +||+|+|++++||+|++.++++++|..+||++|++||+|+|+++++|+||+||++++.+++
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~   84 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNE   84 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEECT
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEEecCCChhhHHHhhhHHHhheeccCCCCCcccccccceEEEEecCC
Confidence            478999999999865    7999999999999999999999999999999999999999999999999999999998776


Q ss_pred             C--CCcEEEEEEEec---CCCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccC
Q 028252           97 A--NGSVCYVKIYLT---AKSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDK  171 (211)
Q Consensus        97 ~--~~~~~tvsF~lP---~~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~  171 (211)
                      +  |.+.++|+|+||   +++||+|+| ++|+|.++|+.++||++|+|+++++++.+++++|+++|+++|+.    + ..
T Consensus        85 ~~~~~~~~~m~F~lP~~~~~~~P~P~d-~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----~-~~  158 (184)
T d2gova1          85 DGSLQKKLKVWFRIPNQFQGSPPAPSD-ESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT----Y-QG  158 (184)
T ss_dssp             TSCEEEEEEEEECCCHHHHHSCCCBCS-SSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC----E-EE
T ss_pred             CCcccCcEEEEEEcchhhcccCCCCcc-ccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHHHHCCCc----c-cC
Confidence            4  778999999999   789999996 79999999999999999999999999999999999999999976    4 45


Q ss_pred             CcEEEEEeCCCCCCCCcceeEEEEe
Q 028252          172 LSYTIAQYNSSRHQAGRLNEVWMNV  196 (211)
Q Consensus       172 ~~~~~A~Yd~P~~~~~R~NEVwi~~  196 (211)
                      +.|++|+||+||+|++|||||||..
T Consensus       159 ~~~~~a~Yd~P~~p~~R~NEVw~vk  183 (184)
T d2gova1         159 DVYYCAGYDPPMKPYGRRNEVWLVK  183 (184)
T ss_dssp             EEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             CCEEEEEeCCCCCCCCcceeEEEEe
Confidence            5678899999999999999999953

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.7e-05  Score=58.80  Aligned_cols=146  Identities=16%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEe-ccCC--CCCcEEEEEEEec-CC
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSI-NPTT--ANGSVCYVKIYLT-AK  111 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i-~p~~--~~~~~~tvsF~lP-~~  111 (211)
                      +|||+..++.+++..... +++.+...++|.+|+.++..++     +..+.+...-. .|..  ..+-.+.+++.++ ..
T Consensus         2 ~~~I~~l~~~~V~g~r~~-g~~~e~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~v~v~~~~   75 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLV-GPWEQTVKKGFEQLMMWVDSKN-----IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYF   75 (155)
T ss_dssp             CCEEEEECCEEEEEEEEE-SCHHHHHHHHHHHHHHHHHHTT-----CCCSEEEEEECSCTTTSCGGGCEEEEEEEECTTC
T ss_pred             CcEEEEECCEEEEEEEEE-cCcHHHHHHHHHHHHHHHHHhC-----CCCCCceEEEecCcCcCCccceeEEEEEEcCCcc
Confidence            689999999999998875 5566778899999999998654     33344433322 1211  1234677888888 44


Q ss_pred             CCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHH-HHHHhcCCCCCCcccccCCcEEEEEeC-CCCCCCCcc
Q 028252          112 SPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEAL-MNSLNLHFTGNTSITEDKLSYTIAQYN-SSRHQAGRL  189 (211)
Q Consensus       112 ~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~~~R~  189 (211)
                      ..|.+.  ..|.+.++|+.++|+..+.|-..+  +.+...+| .+||.++|++      ..+.+.+-.|. .|.....-.
T Consensus        76 ~~~~~~--~~i~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~------~~~~p~~E~Y~~~~~~~~~~~  145 (155)
T d1jyha_          76 TLPENS--EGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYE------MLPKPCFEVYLNNGAEDGYWD  145 (155)
T ss_dssp             CCCSSC--TTCEEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEE------ECSSCEEEEECSCHHHHSSEE
T ss_pred             ccCccc--ceEEEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCe------ECCCccEEEEcCCCCCCCCEE
Confidence            444433  369999999999999999998643  44555555 5799998843      34455555664 332222222


Q ss_pred             eeEEEEec
Q 028252          190 NEVWMNVP  197 (211)
Q Consensus       190 NEVwi~~~  197 (211)
                      =||||||+
T Consensus       146 ~ei~iPIk  153 (155)
T d1jyha_         146 IEMYVAVQ  153 (155)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            49999986

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.68  E-value=0.00057  Score=51.23  Aligned_cols=146  Identities=8%  Similarity=-0.063  Sum_probs=97.6

Q ss_pred             CeEEEEECCceEEEEEeccCchhchHHHHHHHHHhhhhcCCCCCCCCCCccceEEEeccCC---CCCcEEEEEEEec--C
Q 028252           36 DFEIRLYGEAFWASALVQRSSFQNSTKQGFHRLYQYIHGANLNSARFPVTAPVLTSINPTT---ANGSVCYVKIYLT--A  110 (211)
Q Consensus        36 ~yEiR~Y~~~~wv~t~~~~~~~~~A~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~i~p~~---~~~~~~tvsF~lP--~  110 (211)
                      +.-|+.=+.-..+.+..+..+-......+|.+|++|+..+|.-     .+.|+...+.-.+   +....+.-.|...  .
T Consensus         3 ev~i~~~~ei~i~~~~~e~i~p~~~~~~~~~~L~~~~~~~~~~-----~~~~~G~~~~~~~~~~~~~~~y~~~~~~~~~~   77 (157)
T d1r8ea2           3 EVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGF-----TNNSYGATFSFQPYTSIDEMTYRHIFTPVLTN   77 (157)
T ss_dssp             CCEEEEECCEEEEEEECTTCCTTTCCGGGGHHHHHHHHHHHSS-----CCCCEEEEECCCCCSCGGGCCCSEEEEECCCC
T ss_pred             ceEEeccCcEEEEEEEecccCchHHHHHHHHHHHHHHHHcCCC-----CCCceEEEEECCCcccCcceEEEEEEEecccc
Confidence            4556667777788888765544456678999999999887642     3445555542211   1223334344433  4


Q ss_pred             CCCCCCCCCCCeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCC---CC
Q 028252          111 KSPPQPNSELNLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ---AG  187 (211)
Q Consensus       111 ~~pP~P~d~~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~---~~  187 (211)
                      ..++.+.  +++.+..+|+.++++..|.|...  .+.+..++|.+|+.++|+.      ..+..+=-..+.|+..   ..
T Consensus        78 ~~~~~~~--~~~~~~~lp~G~ya~~~~~G~y~--~~~~~y~~l~~~~~~~g~~------~~g~~~E~y~~d~~~~~~~~~  147 (157)
T d1r8ea2          78 KQISSIT--PDMEITTIPKGRYACIAYNFSPE--HYFLNLQKLIKYIADRQLT------VVSDVYELIIPIHYSPKKQEE  147 (157)
T ss_dssp             SCCSSCC--TTSEEEEECSEEEEEEEEECCHH--HHHHHHHHHHHHHHHTTCC------EEEEEEEEEEESCCCSSSCCC
T ss_pred             cccCCcc--CCceEEecCCeEEEEEEEEECcc--chHHHHHHHHHHHHhcCcC------cCCCeEEEEEcCCCCCCCHHH
Confidence            4445454  47899999999999999999874  6788888999999999965      3444444444777653   34


Q ss_pred             cceeEEEEe
Q 028252          188 RLNEVWMNV  196 (211)
Q Consensus       188 R~NEVwi~~  196 (211)
                      -.-||.|++
T Consensus       148 ~~teI~ipv  156 (157)
T d1r8ea2         148 YRVEMKIRI  156 (157)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            467888876

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=2.4  Score=29.44  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHHHHHhcCCCCCCcccccCCcEEEEEeCCCCCC--CCcceeEEEEecC
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALMNSLNLHFTGNTSITEDKLSYTIAQYNSSRHQ--AGRLNEVWMNVPG  198 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~--~~R~NEVwi~~~~  198 (211)
                      +++|+++|+.+|+..+..|.. .+.+.+--++|.+++.++++.       ........||.|-..  ..-+-++.+.+..
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~~~v~v~~   73 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV-------PKEWVAVYYDNPDETPAEKLRCDTVVTVPG   73 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC-------CSEEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC-------CCCceEEEecCcCcCCccceeEEEEEEcCC
Confidence            478999999999999999865 345778888899999998753       344555667877653  3335677777654

>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Rob transcription factor, C-terminal domain
domain: Rob transcription factor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.41  E-value=6.6  Score=27.99  Aligned_cols=70  Identities=6%  Similarity=0.077  Sum_probs=49.0

Q ss_pred             CeEEEeeCCeEEEEEEecCcCChhHHHHHHHHHH-HHHhcCCCCCCcccccCCcEEEEEe----CCCCCC--CCcceeEE
Q 028252          121 NLEIEKWTSHCIAVRKFSGFAKDDNINKEVEALM-NSLNLHFTGNTSITEDKLSYTIAQY----NSSRHQ--AGRLNEVW  193 (211)
Q Consensus       121 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Y----d~P~~~--~~R~NEVw  193 (211)
                      .+....+|+.++||.+|.|..  +.+.+-...|. +||-+.|+.      ..+.+-+=.|    |.+...  ..-.=|+|
T Consensus        92 ~~~~~~ip~g~YAvf~~~G~~--~~l~~~~~~iy~~wLP~sg~~------~~~~~d~E~Y~~~~~~~~~~~~~~~~~e~~  163 (173)
T d1d5ya3          92 TGHPVMLQGGEYVMFTYEGLG--TGVQEFILTVYGTCMPMLNLT------RRKGQDIERYYPAEDAKAGDRPINLRCELL  163 (173)
T ss_dssp             TCEEEEECCEEEEEEEEEEEG--GGHHHHHHHHHHTHHHHTTCE------ECSSCEEEEECGGGC----CCSCEEEEEEE
T ss_pred             CCEEEEEcCcEEEEEEEEeCH--HHHHHHHHHHHHHhhhhCCCc------cCCCCCEEEEecccCCCCCCCCccEEEEEE
Confidence            456678999999999999964  45667777775 699988853      4566778888    455543  22355999


Q ss_pred             EEecC
Q 028252          194 MNVPG  198 (211)
Q Consensus       194 i~~~~  198 (211)
                      |||+.
T Consensus       164 IPIkk  168 (173)
T d1d5ya3         164 IPIRR  168 (173)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99985