Citrus Sinensis ID: 028272
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 211 | ||||||
| 255543264 | 220 | sterol isomerase, putative [Ricinus comm | 0.966 | 0.927 | 0.488 | 3e-53 | |
| 356531218 | 219 | PREDICTED: probable 3-beta-hydroxysteroi | 0.867 | 0.835 | 0.518 | 3e-52 | |
| 255648367 | 219 | unknown [Glycine max] | 0.867 | 0.835 | 0.518 | 3e-52 | |
| 295368128 | 217 | putative C-8,7 sterol isomerase [Gossypi | 0.819 | 0.797 | 0.531 | 7e-52 | |
| 297844972 | 220 | hypothetical protein ARALYDRAFT_472231 [ | 0.800 | 0.768 | 0.523 | 1e-51 | |
| 388517313 | 225 | unknown [Lotus japonicus] | 0.933 | 0.875 | 0.482 | 2e-51 | |
| 224075427 | 220 | predicted protein [Populus trichocarpa] | 0.819 | 0.786 | 0.528 | 7e-51 | |
| 4098989 | 223 | phenylalkylamine binding protein homolog | 0.734 | 0.695 | 0.554 | 1e-50 | |
| 15223758 | 223 | cholestenol delta-isomerase [Arabidopsis | 0.734 | 0.695 | 0.554 | 2e-50 | |
| 21554213 | 223 | C-8,7 sterol isomerase [Arabidopsis thal | 0.734 | 0.695 | 0.554 | 2e-50 |
| >gi|255543264|ref|XP_002512695.1| sterol isomerase, putative [Ricinus communis] gi|223548656|gb|EEF50147.1| sterol isomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 7 TDMALN------FSTASLHAWNGVSLLLIIFVTWIISGMSQAKSKIERLLICWWALTGLI 60
TD+ L S +++ A G S L+++ + W ISG S+ +KI+R L+CWWA TGL
Sbjct: 11 TDLKLEDYVPVFLSQSTILAVFGTSSLVLVSLVWFISGSSRKAAKIDRWLMCWWAFTGLT 70
Query: 61 HVFQEGYYVFTPDLFNDNSPNFMAEIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSL 120
H+ EGY+VF+P+ + D + ++AE+WKEYSKGDSRYA R ++V+ +E + +++ GP SL
Sbjct: 71 HIILEGYFVFSPEFYKDKTSFYLAEVWKEYSKGDSRYAARDSAVVAVEGLTAVLEGPASL 130
Query: 121 LAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEGDNFASSRYYYYSYYVGQSSIW 180
LA YA+A KSY YI QFAIS+ QLYGT YFLT +L+G N+ASS YY+Y+YY+G ++ W
Sbjct: 131 LAVYAIAAGKSYSYILQFAISLGQLYGTAVYFLTPYLDGYNYASSPYYHYAYYIGANASW 190
Query: 181 VIVPMLIATRYWIKIHAICKRLQDKKVTKVG 211
V++P LI R W KI A ++Q ++ TK G
Sbjct: 191 VVIPSLICIRSWKKICA-AFQVQGQRKTKSG 220
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531218|ref|XP_003534175.1| PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255648367|gb|ACU24634.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|295368128|gb|ADG02944.1| putative C-8,7 sterol isomerase [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|297844972|ref|XP_002890367.1| hypothetical protein ARALYDRAFT_472231 [Arabidopsis lyrata subsp. lyrata] gi|297336209|gb|EFH66626.1| hypothetical protein ARALYDRAFT_472231 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|388517313|gb|AFK46718.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|224075427|ref|XP_002304628.1| predicted protein [Populus trichocarpa] gi|222842060|gb|EEE79607.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|4098989|gb|AAD04752.1| phenylalkylamine binding protein homolog [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15223758|ref|NP_173433.1| cholestenol delta-isomerase [Arabidopsis thaliana] gi|18202046|sp|O48962.1|EBP_ARATH RecName: Full=Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase; AltName: Full=Cholestenol Delta-isomerase; AltName: Full=Delta(8)-Delta(7) sterol isomerase; Short=D8-D7 sterol isomerase gi|8778994|gb|AAF79909.1|AC022472_18 Identical to C-8,7 sterol isomerase from Arabidopsis thaliana gb|AF030357. ESTs gb|AI998831, gb|AA585846, gb|T22967 come from this gene [Arabidopsis thaliana] gi|12248039|gb|AAG50111.1|AF334733_1 putative C-8,7 sterol isomerase [Arabidopsis thaliana] gi|2772934|gb|AAD03489.1| C-8,7 sterol isomerase [Arabidopsis thaliana] gi|110736759|dbj|BAF00341.1| C-8,7 sterol isomerase [Arabidopsis thaliana] gi|332191807|gb|AEE29928.1| cholestenol delta-isomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21554213|gb|AAM63292.1| C-8,7 sterol isomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 211 | ||||||
| TAIR|locus:2198626 | 223 | HYD1 "HYDRA1" [Arabidopsis tha | 0.867 | 0.820 | 0.470 | 8.8e-47 | |
| ZFIN|ZDB-GENE-040718-12 | 232 | ebp "emopamil binding protein | 0.834 | 0.758 | 0.298 | 3.3e-24 | |
| UNIPROTKB|D0G6S5 | 230 | EBP "Emopamil binding protein | 0.848 | 0.778 | 0.283 | 6.1e-23 | |
| MGI|MGI:107822 | 230 | Ebp "phenylalkylamine Ca2+ ant | 0.848 | 0.778 | 0.304 | 1.3e-22 | |
| UNIPROTKB|Q15125 | 230 | EBP "3-beta-hydroxysteroid-Del | 0.616 | 0.565 | 0.362 | 2.6e-22 | |
| RGD|620957 | 230 | Ebp "emopamil binding protein | 0.933 | 0.856 | 0.293 | 3.4e-22 | |
| UNIPROTKB|Q3ZBT8 | 230 | EBP "Uncharacterized protein" | 0.862 | 0.791 | 0.308 | 4.3e-22 | |
| UNIPROTKB|E2QYH5 | 230 | EBP "Uncharacterized protein" | 0.630 | 0.578 | 0.352 | 4.9e-21 | |
| UNIPROTKB|E2RDU6 | 230 | E2RDU6 "Uncharacterized protei | 0.881 | 0.808 | 0.291 | 7.2e-20 | |
| UNIPROTKB|C9JJ78 | 160 | EBP "3-beta-hydroxysteroid-Del | 0.554 | 0.731 | 0.352 | 6.5e-19 |
| TAIR|locus:2198626 HYD1 "HYDRA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 87/185 (47%), Positives = 124/185 (67%)
Query: 25 SLLLIIFVTWIISGMSQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMA 84
S LL++ + W++ G + K+K+++LL+CWW TGL HV EGY+VF+P+ F DN+ ++A
Sbjct: 35 SSLLVVSLVWLLFG--RKKAKLDKLLMCWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLA 92
Query: 85 EIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQ 144
E+WKEYSKGDSRY R ++V+ +E + ++++GP SLLA YA+AK+KSY Y+ Q AIS+ Q
Sbjct: 93 EVWKEYSKGDSRYVGRDSAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQ 152
Query: 145 LYGTIQYFLTAFLEGDNFAXXXXXXXXXXXXXXXIWVIVPMLIATRYWIKIHAICKRLQD 204
LYG + YF+TA LEGDNFA WV++P LI+ R W KI A +
Sbjct: 153 LYGCLVYFITAILEGDNFATNSFYYYSYYIGANCWWVLIPSLISFRCWKKICAAAAIANN 212
Query: 205 KKVTK 209
TK
Sbjct: 213 NVETK 217
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| ZFIN|ZDB-GENE-040718-12 ebp "emopamil binding protein (sterol isomerase)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D0G6S5 EBP "Emopamil binding protein (Sterol isomerase)" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:107822 Ebp "phenylalkylamine Ca2+ antagonist (emopamil) binding protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15125 EBP "3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|620957 Ebp "emopamil binding protein (sterol isomerase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q3ZBT8 EBP "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QYH5 EBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RDU6 E2RDU6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|C9JJ78 EBP "3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 211 | |||
| pfam05241 | 193 | pfam05241, EBP, Emopamil binding protein | 1e-46 |
| >gnl|CDD|218520 pfam05241, EBP, Emopamil binding protein | Back alignment and domain information |
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Score = 152 bits (385), Expect = 1e-46
Identities = 65/179 (36%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 23 GVSLLLIIFVTWIISGMSQAK-SKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPN 81
+ L ++ +++S + + SK +RL W+ L GLIH+F EGY+V F+ +S +
Sbjct: 6 LLGCLALLAAAYLLSRRLRPRLSKGDRLAFLWFLLDGLIHLFLEGYFVLNH-AFSASSQD 64
Query: 82 FMAEIWKEYSKGDSRYATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAIS 141
A++WKEY+K DSRY T V+ +E++ ++ GPL LL AYA+AK K R+ Q +S
Sbjct: 65 LFAQLWKEYAKSDSRYLTADPFVVSVETITVLLWGPLCLLVAYAIAKDKPLRHFLQIVVS 124
Query: 142 IAQLYGTIQYFLTAFLEG----DNFA-SSRYYYYSYYVGQSSIWVIVPMLIATRYWIKI 195
+ QLYGT+ YF T +L+G F+ Y++ Y+V +S+W+++P L+ + W ++
Sbjct: 125 VGQLYGTVLYFATEWLDGFVHGREFSTPEPLYFWFYFVFMNSLWIVIPSLLLWQSWKEL 183
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Emopamil binding protein (EBP) is as a gene that encodes a non-glycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities. Length = 193 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 211 | |||
| PF05241 | 194 | EBP: Emopamil binding protein ; InterPro: IPR00790 | 100.0 | |
| KOG4826 | 229 | consensus C-8,7 sterol isomerase [Lipid transport | 100.0 | |
| PF10914 | 150 | DUF2781: Protein of unknown function (DUF2781); In | 96.94 |
| >PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues | Back alignment and domain information |
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Probab=100.00 E-value=4e-63 Score=419.35 Aligned_cols=187 Identities=38% Similarity=0.733 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCchhhHHHHHHHHhhhhhheeEeceeeeecccCCCCCChhHHHhhHhhhcccccc
Q 028272 19 HAWNGVSLLLIIFVTWIISGM-SQAKSKIERLLICWWALTGLIHVFQEGYYVFTPDLFNDNSPNFMAEIWKEYSKGDSRY 97 (211)
Q Consensus 19 l~~~~~~~~~i~~~~~~~~~~-~~~~~~~dr~~~~Wf~~~~~iH~~~EG~fv~~~~~~~~~~~~~~a~LWkeYa~~DsRY 97 (211)
++.+++++++++++++.++++ +|+++++||++++||++||+||+++||+|++++.++++.++++++|+||||+|+|+||
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY 81 (194)
T PF05241_consen 2 LAIFLAGCAAVLLIAYLLSRRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRY 81 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCccc
Confidence 567778888888888888866 6778999999999999999999999999999999998855569999999999999999
Q ss_pred ccCCCcEEeeehhHHHhhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcceeeeehhhhcC----CCCC-CCchhhhhh
Q 028272 98 ATRHTSVLGIESVASIVLGPLSLLAAYAVAKQKSYRYIFQFAISIAQLYGTIQYFLTAFLEG----DNFA-SSRYYYYSY 172 (211)
Q Consensus 98 ~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qLyG~vlyf~te~~~G----~~~~-~~~lyfW~y 172 (211)
+++|++++|+|++|+++|||+|+++++++.++|++||++|+++|++|+|||+|||+||+++| .+++ +|++|||+|
T Consensus 82 ~~~D~~vv~~e~~t~l~~Gpl~l~~~~~i~~~~~~r~~l~i~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y 161 (194)
T PF05241_consen 82 LTSDPFVVCMESITVLLEGPLCLLAAYLIAKRSPYRHFLQIVVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFY 161 (194)
T ss_pred ccCCCcEEeehhHHHHHHhHHHHHHHHHHHhCchHHHHHHHHHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999 4555 899999999
Q ss_pred hhccCcchhhhhHHHHHHHHHHHHHHHHHhhhh
Q 028272 173 YVGQSSIWVIVPMLIATRYWIKIHAICKRLQDK 205 (211)
Q Consensus 173 fV~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 205 (211)
||++|++|+++|++++++|+++|++|++.+|+|
T Consensus 162 ~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 194 (194)
T PF05241_consen 162 FVFPNGIWIVVPLLLLYQSWKEIARAFRAAQKK 194 (194)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998875
|
The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane |
| >KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism] | Back alignment and domain information |
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| >PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97 | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00